Citrus Sinensis ID: 007866
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 586 | 2.2.26 [Sep-21-2011] | |||||||
| A9X4U2 | 561 | 3beta-hydroxysteroid-dehy | yes | no | 0.890 | 0.930 | 0.588 | 1e-175 | |
| Q67ZE1 | 564 | 3beta-hydroxysteroid-dehy | no | no | 0.919 | 0.955 | 0.429 | 1e-121 | |
| Q9FX01 | 439 | 3beta-hydroxysteroid-dehy | no | no | 0.721 | 0.963 | 0.421 | 3e-91 | |
| Q5PPL3 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.569 | 0.922 | 0.373 | 3e-55 | |
| Q9R1J0 | 362 | Sterol-4-alpha-carboxylat | yes | no | 0.571 | 0.925 | 0.370 | 7e-55 | |
| Q3ZBE9 | 356 | Sterol-4-alpha-carboxylat | yes | no | 0.569 | 0.938 | 0.368 | 2e-52 | |
| Q15738 | 373 | Sterol-4-alpha-carboxylat | yes | no | 0.563 | 0.884 | 0.363 | 2e-50 | |
| A8DZE7 | 387 | Short-chain dehydrogenase | no | no | 0.569 | 0.863 | 0.311 | 9e-39 | |
| P53199 | 349 | Sterol-4-alpha-carboxylat | yes | no | 0.551 | 0.925 | 0.323 | 6e-37 | |
| O43050 | 340 | Sterol-4-alpha-carboxylat | yes | no | 0.551 | 0.95 | 0.322 | 7e-36 |
| >sp|A9X4U2|HSDD3_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 617 bits (1590), Expect = e-175, Method: Compositional matrix adjust.
Identities = 313/532 (58%), Positives = 395/532 (74%), Gaps = 10/532 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVAGSLYLSKLML-QSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAK 539
W FFK+AGSLYL KL++ +S + + F+FT FF+YEQYE E+ LA+
Sbjct: 484 WIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELELYHLAR 535
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 0 |
| >sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/563 (42%), Positives = 330/563 (58%), Gaps = 24/563 (4%)
Query: 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
P R CVV GRGF R LV L+ VR+ D ++ LDP E N +L + L
Sbjct: 3 PAATETERWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLR 62
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
SGR +Y D+RD SQ+ K +GA VF++ A D + ++ Y + VQG +NV+ AC +
Sbjct: 63 SGRVQYISADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVD 122
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+RL+Y S+ VVFDG H I NG E++ K D KA+ E L++ AN +GLL
Sbjct: 123 VGVKRLIYTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLL 182
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TC +RPS++FGPGD LVP LV A+ G +KFIIG G N+ DFTYVENVAHAHVCA AL
Sbjct: 183 TCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERAL 242
Query: 242 DSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
S AG A+FITN+EPIKFW+F+S +L+GLGY+RP IK+P ++ I LV+
Sbjct: 243 ASGGDVSTKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELT 302
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
++ LG V+L S +RTFD A+ +GY+PVV L+EG+ TI SFSHL
Sbjct: 303 YKVLGPYGMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLT 362
Query: 359 RDSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLT 418
S SK ++LGGGKVAD LLWKD K+T +L+ ++Y F GST+
Sbjct: 363 AGS----QSKREGPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVV 418
Query: 419 SSAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFR 478
++ +K LL+ S LF +GILP IFG+ V++I S F LS+ D + WN +
Sbjct: 419 TALSKALLVASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVK 478
Query: 479 NIRLLAKGDDWNTFFKV---------AGSLYLSKLMLQSFTWSIGLALVFAFTAFFVYEQ 529
+R L +G+DW+ FFKV AG++ L + + IGL + AF AF VYE+
Sbjct: 479 ALRSLCQGNDWSFFFKVVFVLLALSLAGAISLHSIFV------IGLPI--AFLAFLVYEK 530
Query: 530 YEPEIDGLAKFLFNYLKKSKASL 552
E EID + ++ K K+ +
Sbjct: 531 KEQEIDSIVVSFKSFACKHKSDV 553
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9FX01|HSDD1_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 258/448 (57%), Gaps = 25/448 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ L+P E +L +++ SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIRSGRVQYV 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+R+ +Q+ K +GA VF++ A D + ++ Y + VQG NV+ AC E V+RL+
Sbjct: 70 SADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H N DE+L K D KA+ EAL+L AN GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD +VP LV A+ G +KFIIG G N DFTYVENV HAHVCA AL S
Sbjct: 190 SIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVC 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +LEGLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 AKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAY 365
+ V+L S RTFD A+ +GYSPVV L+EG+ TI SFSHL +
Sbjct: 310 GMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHLKAQN---- 365
Query: 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFL---GGSTLTSSAA 422
Q K E V + + WK K+T ++L+ L++ F S + ++ +
Sbjct: 366 ------QPKTE-------VTETIQWK--KQTLIAIVILITLYHNFVATTGSSSVIITAVS 410
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRI 450
K LL+ S +F GILP + F K+I
Sbjct: 411 KVLLVSSIFMFINGILPEKMKVFGSKKI 438
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 190/353 (53%), Gaps = 19/353 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLSRGYA-VNVFDVRQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + N+++ Y + G K V+ C+E V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR
Sbjct: 190 HGIFGPRDPQLVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHL-SRDAG 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ L+ + L
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVLSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
+ + V LA + C A+K IGY P+V++++ V T+QSF HL +D
Sbjct: 309 IQTTFTPFRVALAGTFHYYSCEKAKKLIGYRPLVTMDDAVERTVQSFHHLRKD 361
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 188/354 (53%), Gaps = 19/354 (5%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LLE G V V D Q + R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERGYT-VNVFDIHQGF---------------DNPRVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + +++ Y + G K V+ CRE V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDAA 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ L+ + +
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361
V LA + C A+K GY P+V+++E V T+QSF HL +D
Sbjct: 309 IQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKDK 362
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 192/361 (53%), Gaps = 27/361 (7%)
Query: 5 EAIPRT--CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E IP+ C V+ G GF+G+ +V +LL G V V D Q +
Sbjct: 15 EDIPKAKRCTVIGGCGFLGQHMVEQLLARGYA-VNVFDIRQGF---------------DN 58
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTAC 119
R ++ D+ + L+G STVF+ + + N + FY I G KNV+ C
Sbjct: 59 PRVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYI---GTKNVIETC 115
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID- 178
+E V++L+ S+A V+F+G DI NG E L K D + K E VL A++ +
Sbjct: 116 KEAGVQKLILTSSASVIFEGV-DIKNGTEDLPYATKPIDYYTETKILQERAVLGAHDPEK 174
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LT A+RP +FGP D QLVP+L+ AK G KF+IG+G+N+ DFT+VENV H H+ AA
Sbjct: 175 NFLTTAIRPHGIFGPRDPQLVPILIEAAKKGKMKFMIGNGKNLVDFTFVENVVHGHILAA 234
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
E L S+ ++ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ LLV +
Sbjct: 235 EHL-SQDTALGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWLAYYLALLVSLL 293
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+ V LA + C A+K +GY P+V++++ V T++SF HL
Sbjct: 294 VMVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLMGYRPLVTMDDAVDKTVRSFHHLR 353
Query: 359 R 359
+
Sbjct: 354 K 354
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|Q15738|NSDHL_HUMAN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/355 (36%), Positives = 187/355 (52%), Gaps = 25/355 (7%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q D + L D S
Sbjct: 38 KRCTVIGGSGFLGQHMVEQLLARGYA-VNVFDIQQGF--DNPQVRFFLGDLCSR------ 88
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ L+G +TVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 89 -------QDLYPALKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLI 141
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A V+F+G DI NG E L K D + K E VL AN+ + LT A+RP
Sbjct: 142 LTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRP 200
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR +
Sbjct: 201 HGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDST 259
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P W L + + + +
Sbjct: 260 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIP---YWVAYYLALLLSLLVMVISP 316
Query: 308 NHSLSACYI---VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
L + V LA + C A+K +GY P+V++++ + T+QSF HL R
Sbjct: 317 VIQLQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLRR 371
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|A8DZE7|D42E1_DANRE Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 190/363 (52%), Gaps = 29/363 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++ G G+ G L LL+ S++ + D S LP+ L RA D
Sbjct: 11 LITGGGGYFGFRLACALLK---------TSSKVVLFDVSPPIQDLPEGLIFMRA-----D 56
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRRLV 128
+RD +Q++K + G+ VF++ + ++ + N +I V+G +N++ AC V RL+
Sbjct: 57 IRDYAQVEKAVRGSHCVFHIASYGMSGREQLNRKLIEEVNVKGTENILRACVAHSVPRLI 116
Query: 129 YNSTADVVFDGSHDIHNGDETLT--CCWKFQDLMCDLKAQAEALVLFANNI-----DGLL 181
Y ST +VVF G +I NGDE+L D K+ AE VL ANN+ G+L
Sbjct: 117 YTSTFNVVF-GGQEIKNGDESLPYLPLHLHPDHYSRTKSIAEMQVLKANNLALSNSTGVL 175
Query: 182 -TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
TCALRP+ ++GPG+ + +P +V+ + G +F+ G +++ +F +V+N+ AH+ AA+A
Sbjct: 176 RTCALRPAGIYGPGEQRHLPRIVSYIENGIFRFVYGDPDSLVEFVHVDNLVSAHLLAADA 235
Query: 241 L-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
L + + AG A+FI++ P+ ++F ++EGLGY P ++LP ++++ L + +H
Sbjct: 236 LTEKQQCRAAGQAYFISDGRPVNNFEFFRPLVEGLGYSFPTLRLPISMIYFFAFLTEMVH 295
Query: 300 EKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358
+G R YN L V T F A++ +GY P + E V Q+ H
Sbjct: 296 FVVG-RIYNFQPLLTRTEVYKTGVTHYFSMRKAREELGYEPKLYDLEDVVQWFQARGHGK 354
Query: 359 RDS 361
+ S
Sbjct: 355 KRS 357
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG26 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 182/356 (51%), Gaps = 33/356 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSS------ 62
+ +++ G GF+G L+ + ++ K + + D LP+ LS
Sbjct: 6 SVLIIGGSGFLGLHLIQQFFDINPKPDIHIFDVRD------------LPEKLSKQFTFNV 53
Query: 63 GRAEYHQVDVRDISQIKKVL-EGASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTAC 119
++H+ D+ ++ + E + V A+ ++ D Y+ ++ V+G +NV+ C
Sbjct: 54 DDIKFHKGDLTSPDDMENAINESKANVVVHCASPMHGQNPDIYD--IVNVKGTRNVIDMC 111
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
++C V LVY S+A V+F+G D+HN DET D + KA AE +VL AN+
Sbjct: 112 KKCGVNILVYTSSAGVIFNG-QDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDPSS 170
Query: 180 -LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
T ALRP+ +FGPGD QLVP L +AK G +KF IG N+ D+TY NVA AHV AA
Sbjct: 171 DFYTVALRPAGIFGPGDRQLVPGLRQVAKLGQSKFQIGDNNNLFDWTYAGNVADAHVLAA 230
Query: 239 EA-LDSRM-VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLV 295
+ LD + +V+G FFITN P FW + + G+ + I L V L
Sbjct: 231 QKLLDPKTRTAVSGETFFITNDTPTYFWALARTVWKADGHIDKHVIVLKRPVAICAGYLS 290
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+W+ + LG L+ + V++ R + A+K +GY+P V +EEG++ T+
Sbjct: 291 EWVSKMLGKEP---GLTP-FRVKIVCAYRYHNIAKAKKLLGYTPRVGIEEGINKTL 342
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
| >sp|O43050|ERG26_SCHPO Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg26 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 177/353 (50%), Gaps = 30/353 (8%)
Query: 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
+P V++ G GF+G ++ +L E ++ + D E+ LL + G+
Sbjct: 1 MPMNSVLVIGSGFLGGHIIRQLCE--------RENLRIAAFDLFENEKLLHEL--HGQFT 50
Query: 67 YHQVDVRDISQIKKVLE--GASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK 123
+ D+ I++V E V + + N D Y + + V G N++ AC++
Sbjct: 51 MYTGDLTKQGDIERVFEEFHPRVVIHTASPVHNLARDIY--FEVNVDGTANIIKACQKFN 108
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
V LVY S+A VVF+G+ D+ N DE+ D + KA AE VL A++ + L T
Sbjct: 109 VDALVYTSSAGVVFNGA-DLINVDESQPIPEVHMDAYNESKALAEKQVLEASS-ESLKTA 166
Query: 184 ALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
ALR + +FGPGD QLVP ++++ K G TKF +G N+ DFTY+EN A+AH+ A + L S
Sbjct: 167 ALRVAGLFGPGDRQLVPGMLSVLKNGQTKFQLGDNLNLFDFTYIENAAYAHLLAMDNLLS 226
Query: 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWI---- 298
+ G FFITN + I FWDF I G+ P+ IK P V + +W+
Sbjct: 227 SNPTANGQVFFITNGQVIYFWDFARAIWAHAGHVPPYIIKFPRPVGMLLATAAEWVCYFL 286
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
++ G + VQ + R F+ A+ + Y P+V LEEG+ T+
Sbjct: 287 KKEPGFTRFR--------VQFSCANRYFNIQKAEDVLKYHPIVDLEEGIRRTL 331
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 586 | ||||||
| 359478143 | 581 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.959 | 0.967 | 0.693 | 0.0 | |
| 255577185 | 579 | hydroxysteroid dehydrogenase, putative [ | 0.976 | 0.987 | 0.662 | 0.0 | |
| 147801865 | 1976 | hypothetical protein VITISV_007871 [Viti | 0.930 | 0.275 | 0.622 | 0.0 | |
| 449459852 | 582 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.970 | 0.977 | 0.614 | 0.0 | |
| 449498843 | 582 | PREDICTED: LOW QUALITY PROTEIN: 3beta-hy | 0.970 | 0.977 | 0.612 | 0.0 | |
| 356544508 | 586 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.977 | 0.977 | 0.608 | 0.0 | |
| 356541140 | 575 | PREDICTED: 3beta-hydroxysteroid-dehydrog | 0.955 | 0.973 | 0.615 | 0.0 | |
| 18406234 | 561 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.890 | 0.930 | 0.588 | 1e-174 | |
| 89521300 | 561 | 4-alphacarboxysterol-dehydrogenase/C4-de | 0.890 | 0.930 | 0.588 | 1e-174 | |
| 357473073 | 589 | 3beta-hydroxysteroid-dehydrogenase/decar | 0.969 | 0.964 | 0.547 | 1e-173 |
| >gi|359478143|ref|XP_002269633.2| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera] gi|297743842|emb|CBI36725.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/565 (69%), Positives = 465/565 (82%), Gaps = 3/565 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGKVADILLW+DEKKTFT FL L L+FYWFFL G T SS
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGKVADILLWRDEKKTFTCFLALFLMFYWFFLCGRTFISS 418
Query: 421 AAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNI 480
AAK LLL++A+L G GILP+NIFGF+++RIS SCFE+S+TV+ D I +A LWN I
Sbjct: 419 AAKLLLLVTAILSGQGILPTNIFGFSIQRISLSCFEISDTVVNDLITNMANLWNNWIHMI 478
Query: 481 RLLAKGDDWNTFFKVAGSLYLSKLML-QSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAK 539
RLLA G DWNTFFKVA LY KL+L Q T +G+ALV AFT+FFVYEQYE E+DGLA+
Sbjct: 479 RLLAGGGDWNTFFKVAIPLYFLKLILSQCLTLVVGVALVLAFTSFFVYEQYEEEMDGLAE 538
Query: 540 FLFNYLKKSKASLIRNVPAPFVSFL 564
LF+ +KKSK L+RN+PAP VSFL
Sbjct: 539 VLFDSIKKSKRLLMRNLPAPLVSFL 563
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577185|ref|XP_002529475.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] gi|223531033|gb|EEF32885.1| hydroxysteroid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/575 (66%), Positives = 461/575 (80%), Gaps = 3/575 (0%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS 59
+PF E PRTC V+ GRGF+GRSLV LL+LG IVRV DS QSLQLD ++S +S L D+
Sbjct: 5 VPFGELNPRTCTVVGGRGFIGRSLVFNLLKLGNWIVRVVDSAQSLQLDLTDSLDSSLNDA 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTAC 119
+SSGRA YH +DV DIS I K +EG+S VFY++ATDL T DFY CY +VQGAKNV+ AC
Sbjct: 65 ISSGRASYHYIDVIDISVIAKAIEGSSVVFYMEATDLWTHDFYYCYRNVVQGAKNVIDAC 124
Query: 120 RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
R+CKVR+L+YNS+ADV+FDGSHDI NGDE+L C W+F+D++ DLKA AEALVLFANNIDG
Sbjct: 125 RQCKVRKLIYNSSADVIFDGSHDICNGDESLPCHWRFEDMLNDLKAHAEALVLFANNIDG 184
Query: 180 LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
LLTCALRPSNVFGPGDTQL+P L++LAK G KFIIGSGENMSDFTYVENVAHAH+CAAE
Sbjct: 185 LLTCALRPSNVFGPGDTQLLPFLISLAKSGCAKFIIGSGENMSDFTYVENVAHAHICAAE 244
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
ALDSRMV VAG AFFITNLEP+KFW+F S+ILE L YQRP IKLP +VWY++L +KW+H
Sbjct: 245 ALDSRMVCVAGKAFFITNLEPMKFWEFASLILEALSYQRPLIKLPAQMVWYVLLFIKWMH 304
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
EKLG YNHS+SA Y +LAS TRTF+CIAAQK+IGYSPVVSL++G++ TI+++S+L +
Sbjct: 305 EKLGFSKYNHSMSA-YFFRLASHTRTFNCIAAQKYIGYSPVVSLDDGIALTIEAYSNLVK 363
Query: 360 DSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTS 419
D S +F E+SKV+KLLGGGKVADILLW+DEKKTFTYFL+ +LFYWF L G T TS
Sbjct: 364 DPSFMRCPNFEEESKVDKLLGGGKVADILLWRDEKKTFTYFLIFAVLFYWFLLSGRTFTS 423
Query: 420 SAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRN 479
SAA+ LLL +L+GYG LP I GF ++RIS S FE+SET++KDS+ IA LWN G N
Sbjct: 424 SAARLLLLSVTILYGYGFLPLKISGFTIQRISLSWFEISETMVKDSVTSIASLWNRGVHN 483
Query: 480 IRLLAKGDDWNTFFKVAGSLYLSKL-MLQSFTWSIGLALVFAFTAFFVYEQYEPEIDGLA 538
IRLL +G D N F KV LY KL +LQSFT G+ LVFAFTAFFVYEQYE E+DGL
Sbjct: 484 IRLLVQGKDSNRFLKVLFVLYSIKLILLQSFTVVAGITLVFAFTAFFVYEQYEAEVDGLM 543
Query: 539 KFLFNYLKKSKASLIRNVPAPFVSFLYDCKILHEH 573
K L + +++SK L+R +PAP SFL + +L++
Sbjct: 544 KLLLSGIEESKRLLMRKLPAPVASFLQNKGMLNKE 578
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801865|emb|CAN74982.1| hypothetical protein VITISV_007871 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/586 (62%), Positives = 441/586 (75%), Gaps = 41/586 (6%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL 60
M DE + +TCVV GRGF+GR LVLRLL+LGK IVRV DS QSLQLDPSE S+L +++
Sbjct: 1 MAIDENL-KTCVVFGGRGFIGRFLVLRLLKLGKWIVRVADSAQSLQLDPSEDRSVLSEAI 59
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR 120
SSGRA VDVRD +Q++K +EGAS VFY+D T T+DFY CYMIIVQG +NV+ AC+
Sbjct: 60 SSGRASCCAVDVRDKAQVRKAIEGASVVFYMDPTITYTNDFYLCYMIIVQGVRNVINACQ 119
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
ECKV+RL+YNS+ADVVFDGSHDI+NGDE+L C WKF+D++ D+KAQAE LVL ANNIDGL
Sbjct: 120 ECKVKRLIYNSSADVVFDGSHDIYNGDESLPCPWKFEDMLTDIKAQAEGLVLIANNIDGL 179
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+TCALRP NVFGPGD QLVP LVN AK G KF+IGSGENMSDFTYVENVAHAHVCA EA
Sbjct: 180 VTCALRPCNVFGPGDKQLVPFLVNKAKSGHAKFVIGSGENMSDFTYVENVAHAHVCAEEA 239
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
L SRMVSVAG FFITNLEP+KFW+F+S+ILEGLGYQRP KLP G+V Y++ LV+W+ +
Sbjct: 240 LVSRMVSVAGKVFFITNLEPVKFWEFVSLILEGLGYQRPLFKLPAGMVLYVLSLVEWMRD 299
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
KL R+ NH +SA Y+VQ+ASRTRTF+C AAQKHIGYSPVVSLEEGV+ T +SFS L++D
Sbjct: 300 KLDFRS-NHPVSAQYVVQIASRTRTFNCSAAQKHIGYSPVVSLEEGVTLTTESFSQLSQD 358
Query: 361 SSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSS 420
SS+ RDF+EQSKV+KLLGGGK
Sbjct: 359 SSVMALRDFDEQSKVDKLLGGGK------------------------------------- 381
Query: 421 AAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNI 480
AK LLL++A+L G GILP+NIFGF+++RIS SCFE+S TV+ D I +A LWN I
Sbjct: 382 -AKLLLLVTAILSGQGILPTNIFGFSIQRISLSCFEISXTVVNDLITNMANLWNNWIHMI 440
Query: 481 RLLAKGDDWNTFFKVAGSLYLSKLML-QSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAK 539
RLLA G DWNTFFKVA LY KL+L Q T +G+ALV AFT+FFVYEQYE E+DGLA+
Sbjct: 441 RLLAGGGDWNTFFKVAIPLYFLKLILSQCLTLVVGVALVLAFTSFFVYEQYEEEMDGLAE 500
Query: 540 FLFNYLKKSKASLIRNVPAPFVSFLYDCKILHEHKAPTEGNDRKRL 585
LF+ +KKSK L+RN+PAP VSFL + L + + T + ++
Sbjct: 501 VLFDSIKKSKRLLMRNLPAPLVSFLCNRDALPDDEGFTMAKSQAKV 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459852|ref|XP_004147660.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/571 (61%), Positives = 438/571 (76%), Gaps = 2/571 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWFF+ G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFFVRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + VL+GYG +P NI+GF V+++S + F S++V++DSI +A LWN G N R
Sbjct: 426 QLLLSIIIVLYGYGFIPPNIYGFPVQKLSVTAFRQSDSVVRDSIMTLACLWNRGVHNARA 485
Query: 483 LAKGDDWNTFFK-VAGSLYLSKLMLQSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAKFL 541
LA+G+DWN F K VA L L+ +S T +G+ LVFAFTAFFVYEQYE EID AKF
Sbjct: 486 LARGEDWNYFLKAVAFLYLLKLLLARSLTMLLGVGLVFAFTAFFVYEQYEAEIDEFAKFF 545
Query: 542 FNYLKKSKASLIRNVPAPFVSFLYDCKILHE 572
F + + K L ++P P +SFL ++ H
Sbjct: 546 FIGIMELKKLLASHLPTPLMSFLCCDRVPHH 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449498843|ref|XP_004160650.1| PREDICTED: LOW QUALITY PROTEIN: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/571 (61%), Positives = 436/571 (76%), Gaps = 2/571 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F E +TCVVL GRGF+GRSLVLRLL+L K VR+ DS SL+LDPSE +SLL D+L +
Sbjct: 7 FLELNTKTCVVLGGRGFLGRSLVLRLLKLAKWNVRIADSANSLELDPSEHDSLLSDALIA 66
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
GRA Y VDVR+ QI L G+S VFY+D D +++D Y YM IVQGAKNV++ACR+C
Sbjct: 67 GRASYFHVDVRNKDQIVAALSGSSVVFYMDYEDSHSNDIYLSYMFIVQGAKNVISACRDC 126
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
KVRRL++NS+ADV+FDGS DI NG+E+LT WKF+D++ DLKAQAEAL+LFAN+IDGLLT
Sbjct: 127 KVRRLIFNSSADVIFDGSRDILNGEESLTYPWKFEDMLSDLKAQAEALILFANDIDGLLT 186
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
CALRPSNVFGP DT+LVP +V+ AK G+ KFIIG+GENMSDFT+VENV HAH+CA EALD
Sbjct: 187 CALRPSNVFGPEDTRLVPFIVHQAKSGFAKFIIGNGENMSDFTFVENVTHAHICAEEALD 246
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
RMVSVAG AFFITN +P+KFW+F+S+IL GLGY+RP +KLP+ VVW ++L +KWI EK
Sbjct: 247 FRMVSVAGKAFFITNFKPMKFWEFISLILRGLGYRRPSVKLPSKVVWNVLLFMKWIDEKF 306
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G YNHS A YI QLAS TRTF C AA K +GYSPVVSLEEG++ TI+SFSHL ++ S
Sbjct: 307 GFNKYNHSTWAHYI-QLASCTRTFSCAAAHKQLGYSPVVSLEEGITLTIKSFSHLRKELS 365
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
LA +F E+SK +KLLGGG+VAD+LLW+DEKK+FT FL LLFYWF G T SSAA
Sbjct: 366 LASFTEFTEESKADKLLGGGRVADVLLWRDEKKSFTCFLASSLLFYWFLXRGGTFISSAA 425
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + VL+GYG +P NI+GF V+++S + F S++V++DSI +A LWN G N R
Sbjct: 426 QLLLSIIIVLYGYGFIPPNIYGFPVQKLSVTAFRQSDSVVRDSIMTLACLWNRGVHNARA 485
Query: 483 LAKGDDWNTFFK-VAGSLYLSKLMLQSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAKFL 541
LA+G+DWN F K VA L L+ +S T +G+ LVFAFTAFFVYEQYE EID AKF
Sbjct: 486 LARGEDWNYFLKAVAFLYLLKLLLARSLTMLLGVGLVFAFTAFFVYEQYEAEIDEFAKFF 545
Query: 542 FNYLKKSKASLIRNVPAPFVSFLYDCKILHE 572
F + + K L ++P P +SFL ++ H
Sbjct: 546 FIGIMELKKLLASHLPTPLMSFLCCDRVPHH 576
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544508|ref|XP_003540692.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/578 (60%), Positives = 442/578 (76%), Gaps = 5/578 (0%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAE 66
P+TCVVL GRGFVGRSLVLRLL+LG IVR+ DS QSLQL SES LL +LSS RA
Sbjct: 12 PKTCVVLGGRGFVGRSLVLRLLKLGNWIVRIADSAQSLQLHHSES--LLQQALSSSSRAS 69
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
Y VD+RD I KVL+G+ VFY+D ++ +DF CY +IVQGAKNV++ CREC+V+R
Sbjct: 70 YFHVDLRDKRSIIKVLQGSFVVFYLDIAGVDGNDFCTCYKLIVQGAKNVISVCRECRVKR 129
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
L+YNS+ADVVFDG HDI +GDE+L WK +++ DLKAQAEAL+L AN+IDGLLTC+LR
Sbjct: 130 LIYNSSADVVFDGLHDIRDGDESLAYPWKTDNMLSDLKAQAEALILSANDIDGLLTCSLR 189
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
PSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+ +MV
Sbjct: 190 PSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQMV 249
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306
S AG AFFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+H+KLG R
Sbjct: 250 SAAGKAFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHKKLGPRY 309
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYS 366
+++ L + QLAS TRTF+C+AAQ IGYSP+VSLEEGV+ TI+SFSHL+RDSS
Sbjct: 310 FSYPL-LVHFFQLASYTRTFNCMAAQNDIGYSPIVSLEEGVTLTIESFSHLSRDSSFPRC 368
Query: 367 RDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLL 426
F EQSK +KLLGGGKVADILLW+DEKK+F YFLVLVLLFYW FL G T SSAA+ LL
Sbjct: 369 CSFTEQSKADKLLGGGKVADILLWRDEKKSFAYFLVLVLLFYWSFLSGRTFISSAARLLL 428
Query: 427 LLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKG 486
L + +L+G+G LPS +FGF+++RI S FE+S+T +KDS+ +LWN GF+NIR LA+G
Sbjct: 429 LATLLLYGHGFLPSKLFGFHIQRIPTSYFEISDTAVKDSVTTTVYLWNRGFQNIRGLAQG 488
Query: 487 DDWNTFFKVAGSLYLSKLMLQS-FTWSIGLALVFAFTAFFVYEQYEPEIDGLAKFLFNYL 545
D+W+ FFK+A LYL KL+L FT IG+ LV AF AFFVYEQYE EIDGL FLF L
Sbjct: 489 DNWSAFFKIAVFLYLLKLILSELFTKMIGIGLVIAFMAFFVYEQYESEIDGLVDFLFTSL 548
Query: 546 KKSKASLIRNVPAPFVSFLYDCKILHEHKAPTEGNDRK 583
K+ L+R P + L+ ++ P + D +
Sbjct: 549 KEFMIYLMRISPVSILRLLHYHDNFQRYEGPRKVKDLR 586
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541140|ref|XP_003539040.1| PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/564 (61%), Positives = 433/564 (76%), Gaps = 4/564 (0%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F + P+TCVVL GRGF+GRSLVLRLL+LG IVRV DS QSLQL SES LL +LSS
Sbjct: 8 FADLNPKTCVVLGGRGFLGRSLVLRLLKLGNWIVRVADSAQSLQLHHSES--LLEQALSS 65
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
RA Y VD+ D I KVLEG+S VFY+D ++ ++FY CY ++VQGAKNV++ACREC
Sbjct: 66 SRASYFHVDLLDKRSIVKVLEGSSVVFYMDVAGVDVNNFYTCYKLMVQGAKNVISACREC 125
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLT 182
+VRRL+YNS+ADVV G HDI +GDE+L WK + + DLKAQAEAL+L AN+IDGLLT
Sbjct: 126 RVRRLIYNSSADVVVGGLHDIRDGDESLAYPWKTNNTLSDLKAQAEALILSANDIDGLLT 185
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
C+LRPSNVFGPGDT+ VP + LA+ G++KFIIG+G+N+SDFT+ ENV HAH+CA EAL+
Sbjct: 186 CSLRPSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALN 245
Query: 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302
+ VSVAG FFITNLEP+KFW+FLS++LEGL YQRPFIKLP +V YI+ ++KW+HEKL
Sbjct: 246 FQTVSVAGKTFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHEKL 305
Query: 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362
G R +++ L + QLAS TRTF+C+AAQK IGYSP+VSLEEGV+ TI+SFSHLARDSS
Sbjct: 306 GSRYFSYPL-LVHFFQLASYTRTFNCMAAQKDIGYSPIVSLEEGVTLTIESFSHLARDSS 364
Query: 363 LAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAA 422
+ EQSK +KLLGGGKVADILLW++EKK+F FLVLVLLFYWFFL G T S+AA
Sbjct: 365 FSRCCSSTEQSKADKLLGGGKVADILLWREEKKSFACFLVLVLLFYWFFLSGRTFISAAA 424
Query: 423 KFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRL 482
+ LL + +L+G+G LPS +FGF+++RI + FE+S+T +KDS+ +LWN GF+NI
Sbjct: 425 RLLLFSTLLLYGHGFLPSKLFGFHIQRIPTTYFEISDTAVKDSVTTTVYLWNRGFQNISG 484
Query: 483 LAKGDDWNTFFKVAGSLYLSKLMLQS-FTWSIGLALVFAFTAFFVYEQYEPEIDGLAKFL 541
LA+GDDW+ FFK+A LYL KL+L FT IG+ L AF AFFVYEQYE EIDGL FL
Sbjct: 485 LAQGDDWSAFFKIAVFLYLLKLILSELFTKMIGIGLAVAFMAFFVYEQYESEIDGLVDFL 544
Query: 542 FNYLKKSKASLIRNVPAPFVSFLY 565
F LK+ L+R P L+
Sbjct: 545 FTSLKEFMIHLMRISPVSISRLLH 568
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406234|ref|NP_565998.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] gi|229890389|sp|A9X4U2.2|HSDD3_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3; Short=At3BETAHSD/D3; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4- decarboxylase isoform 1-3; AltName: Full=Reticulon-like protein B20; Short=AtRTNLB20; AltName: Full=Sterol-4-alpha-carboxylate 3-dehydrogenase 3, decarboxylating gi|15027969|gb|AAK76515.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|20196859|gb|AAB64337.2| putative sterol dehydrogenase [Arabidopsis thaliana] gi|26450922|dbj|BAC42568.1| putative sterol dehydrogenase [Arabidopsis thaliana] gi|330255172|gb|AEC10266.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 313/532 (58%), Positives = 395/532 (74%), Gaps = 10/532 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVAGSLYLSKLML-QSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAK 539
W FFK+AGSLYL KL++ +S + + F+FT FF+YEQYE E+ LA+
Sbjct: 484 WIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELELYHLAR 535
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|89521300|gb|ABD76542.1| 4-alphacarboxysterol-dehydrogenase/C4-decarboxylase isoform 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 313/532 (58%), Positives = 395/532 (74%), Gaps = 10/532 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLL 428
QS ++LLG GKVADILLW++EKKTF FLVL L +YWFF G+T TSSAA+ L +
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 SAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
+ L+G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVAGSLYLSKLML-QSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAK 539
W FFK+AGSLYL KL++ +S + + F+FT FF+YEQYE E+ LA+
Sbjct: 484 WIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELELYHLAR 535
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357473073|ref|XP_003606821.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] gi|355507876|gb|AES89018.1| 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 326/595 (54%), Positives = 424/595 (71%), Gaps = 27/595 (4%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
F ++ P+TCVVL GRGF+G+SLVL+LL+LG IVR+ DST SL L SES LL ++LSS
Sbjct: 8 FQDSNPKTCVVLGGRGFIGKSLVLQLLKLGNWIVRIADSTHSLNLHHSES--LLAEALSS 65
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRE 121
RA Y +D+ D +I KVLEG+S VFY D + N D F + Y +IVQGAKNV+ ACRE
Sbjct: 66 SRASYFHLDLTDKHRIAKVLEGSSVVFYFDVDSSNNGDHFCSLYKLIVQGAKNVIIACRE 125
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
KV+RL+YNS+ADVVFD D+ L WK +++ DLKAQAEAL+L AN+IDG+L
Sbjct: 126 SKVKRLIYNSSADVVFDR-------DKPLAYPWKVDNMLIDLKAQAEALILNANDIDGVL 178
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TC+LR SNVFGPGD++LVP + LA+ G+TKFIIG+G+N++DFT+ ENVAHAH+CA EAL
Sbjct: 179 TCSLRSSNVFGPGDSELVPFFLKLARYGFTKFIIGTGDNLTDFTFSENVAHAHICAEEAL 238
Query: 242 DSRMVSVAG------------MAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
+ + VSVAG AFFITNLEP+KFW FLS++LEGLGY+RPFIKLP +V
Sbjct: 239 NFQTVSVAGKVYTLNSNKVVLTAFFITNLEPMKFWKFLSLLLEGLGYRRPFIKLPANLVQ 298
Query: 290 YIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
Y++ ++KW++EK G +N+ L + +QLA TRTF+C AAQK+I Y+P+VSLEEGV+
Sbjct: 299 YVLSVLKWLYEKSGPGYFNYPL-LVHFIQLALHTRTFNCSAAQKYIAYAPIVSLEEGVTL 357
Query: 350 TIQSFSHLARDSSLAYSRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYW 409
TI+SFSHLA+DSS + D +SK +KLLG GKVADILLW++EK +FT FL LV LFYW
Sbjct: 358 TIESFSHLAKDSSFSRCCD---RSKADKLLGSGKVADILLWRNEKASFTCFLGLVFLFYW 414
Query: 410 FFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARI 469
FFL GST SSAA+ LL + +L G+G LPS +FGF+++R+ S F++S+T +KDS+
Sbjct: 415 FFLSGSTFISSAARLLLFATLLLCGHGFLPSKLFGFSIQRVPGSNFKISDTAVKDSVTIT 474
Query: 470 AFLWNMGFRNIRLLAKGDDWNTFFKVAG-SLYLSKLMLQSFTWSIGLALVFAFTAFFVYE 528
LWN GF+NI+ LA+GDDW+ FFKVAG L + + T IG+ LVFAF FFVYE
Sbjct: 475 LHLWNKGFQNIKGLAQGDDWSIFFKVAGFLYLLKLFLSKLLTTLIGVGLVFAFMVFFVYE 534
Query: 529 QYEPEIDGLAKFLFNYLKKSKASLIRNVPAPFVSFLYDCKILHEHKAPTEGNDRK 583
QYE EIDGL L K+ L+RN+P L+ ++ P G D +
Sbjct: 535 QYESEIDGLVDILITISKEFMVYLMRNLPVSVSRLLHYGDNFQHYQGPECGKDLR 589
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 586 | ||||||
| TAIR|locus:2058223 | 561 | AT2G43420 [Arabidopsis thalian | 0.914 | 0.955 | 0.534 | 3.3e-143 | |
| TAIR|locus:2057786 | 564 | 3BETAHSD/D2 "3beta-hydroxyster | 0.921 | 0.957 | 0.406 | 1.7e-98 | |
| TAIR|locus:2203771 | 439 | 3BETAHSD/D1 "3beta-hydroxyster | 0.595 | 0.794 | 0.468 | 1.6e-77 | |
| UNIPROTKB|F1S2D0 | 361 | NSDHL "Uncharacterized protein | 0.571 | 0.927 | 0.386 | 8.9e-54 | |
| ZFIN|ZDB-GENE-050417-163 | 345 | nsdhl "NAD(P) dependent steroi | 0.563 | 0.956 | 0.390 | 1.7e-52 | |
| MGI|MGI:1099438 | 362 | Nsdhl "NAD(P) dependent steroi | 0.569 | 0.922 | 0.373 | 6.5e-51 | |
| UNIPROTKB|F6XJP3 | 361 | NSDHL "Uncharacterized protein | 0.575 | 0.933 | 0.368 | 1.3e-50 | |
| UNIPROTKB|Q15738 | 373 | NSDHL "Sterol-4-alpha-carboxyl | 0.568 | 0.892 | 0.372 | 1.3e-50 | |
| UNIPROTKB|E1C279 | 346 | NSDHL "Uncharacterized protein | 0.563 | 0.953 | 0.380 | 1.7e-50 | |
| UNIPROTKB|E2QVH4 | 373 | NSDHL "Uncharacterized protein | 0.564 | 0.887 | 0.371 | 2.8e-50 |
| TAIR|locus:2058223 AT2G43420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 292/546 (53%), Positives = 366/546 (67%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+TCVVL GRGF+GRSLV RLL LG VRV DS +L LD ES+SLL D+LSSGRA YH
Sbjct: 13 KTCVVLGGRGFIGRSLVSRLLRLGNWTVRVADSGHTLHLD--ESDSLLEDALSSGRASYH 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
VDVRD QI KV EG+ VFY+ ATDL + D+++CY +IVQG +NV++ACRE VR+L+
Sbjct: 71 CVDVRDKPQIVKVTEGSYVVFYMGATDLRSHDYFDCYKVIVQGTRNVISACRESGVRKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
YNSTADVVFDGS I +GDE+L KFQ ++ D KAQAEAL+ ANN DGLLTCALR S
Sbjct: 131 YNSTADVVFDGSQPIRDGDESLRRPLKFQSMLTDFKAQAEALIKLANNRDGLLTCALRSS 190
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
VFGPGDT+ VP LVNLAK G+ KFI+GSGEN+SDFTY ENV+HAH+CA +ALDS+M V
Sbjct: 191 IVFGPGDTEFVPFLVNLAKSGYAKFILGSGENISDFTYSENVSHAHICAVKALDSQMEFV 250
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
AG FFITNL+P++FWDF+S I+EGLGY RP IKLP +V Y+ L+KW HEK GL + N
Sbjct: 251 AGKEFFITNLKPVRFWDFVSHIVEGLGYPRPSIKLPVRLVLYVFSLLKWTHEKEGLGS-N 309
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRD 368
+ + Y + LAS TRTF+C AA+KH+GY+PVV+LE+G++ST+Q FS RD L S D
Sbjct: 310 YDTAHQYAL-LASSTRTFNCNAAKKHLGYTPVVTLEDGIASTLQWFS---RD--LEKSDD 363
Query: 369 FNEQSKVEKLLGGGKVADILLWKDEKKXXXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXX 428
QS ++LLG GKVADILLW++EKK G
Sbjct: 364 TIIQSTADQLLGCGKVADILLWRNEKKTFVSFLVLNLFYYWFFFSGNTFTSSAAQLLFIF 423
Query: 429 XXXXXGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488
G +PS IFGF V +I P FE+SE+ ++D + I +WN G R+ + L+ G D
Sbjct: 424 AVALYGVSFVPSKIFGFQVNKIPPWRFEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGD 483
Query: 489 WNTFFKVAGSLYLSKLML-QSFTWSIGXXXXXXXXXXXXYEQYEPEIDGLAKFLFNYLKK 547
W FFK+AGSLYL KL++ +S + YEQYE E+ LA+ L
Sbjct: 484 WIKFFKIAGSLYLLKLIVSRSLAAFLFTVMSFSFTGFFIYEQYELELYHLARIFVECLTF 543
Query: 548 SKASLI 553
K +I
Sbjct: 544 IKRMVI 549
|
|
| TAIR|locus:2057786 3BETAHSD/D2 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 223/548 (40%), Positives = 298/548 (54%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ LDP E N +L + L SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYEMFCVRIADLAPAIMLDPQEGNGVLDEGLRSGRVQYI 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+RD SQ+ K +GA VF++ A D + ++ Y + VQG +NV+ AC + V+RL+
Sbjct: 70 SADLRDKSQVVKAFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTQNVIDACVDVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H I NG E++ K D KA+ E L++ AN +GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGILNGTESMAYPIKHNDSYSATKAEGEELIMKANGRNGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD LVP LV A+ G +KFIIG G N+ DFTYVENVAHAHVCA AL S
Sbjct: 190 SIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASGGDVS 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +L+GLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 TKAAGQAYFITNMEPIKFWEFMSQLLDGLGYERPSIKIPAFIMMPIAHLVELTYKVLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAY 365
V+L S +RTFD A+ +GY+PVV L+EG+ TI SFSHL S
Sbjct: 310 GMTVPQLTPSRVRLLSCSRTFDSTKAKDRLGYAPVVPLQEGIRRTIDSFSHLTAGSQS-- 367
Query: 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKXXXXXXXXXXXXXXXXXGGXXXXXXXXXXX 425
R+ SK ++LGGGKVAD LLWKD K+ G
Sbjct: 368 KRE--GPSKASRILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKAL 425
Query: 426 XXXXXXXXGYGILPSNIFGFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAK 485
+GILP IFG+ V++I S F LS+ D + WN + +R L +
Sbjct: 426 LVASVFLFLHGILPEKIFGYTVEKIPASQFHLSKDSSHDLSLSVISSWNTTVKALRSLCQ 485
Query: 486 GDDWNTFFKVAGSLYLSKLMLQSFTWSIGXXXX-XXXXXXXXYEQYEPEIDGLAKFLFNY 544
G+DW+ FFKV L L SI YE+ E EID + ++
Sbjct: 486 GNDWSFFFKVVFVLLALSLAGAISLHSIFVIGLPIAFLAFLVYEKKEQEIDSIVVSFKSF 545
Query: 545 LKKSKASL 552
K K+ +
Sbjct: 546 ACKHKSDV 553
|
|
| TAIR|locus:2203771 3BETAHSD/D1 "3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 165/352 (46%), Positives = 217/352 (61%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R CVV GRGF R LV L+ VR+ D ++ L+P E +L +++ SGR +Y
Sbjct: 10 RWCVVTGGRGFAARHLVEMLVRYQMFHVRIADLAPAIVLNPHEETGILGEAIRSGRVQYV 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+R+ +Q+ K +GA VF++ A D + ++ Y + VQG NV+ AC E V+RL+
Sbjct: 70 SADLRNKTQVVKGFQGAEVVFHMAAPDSSINNHQLQYSVNVQGTTNVIDACIEVGVKRLI 129
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
Y S+ VVFDG H N DE+L K D KA+ EAL+L AN GLLTC +RPS
Sbjct: 130 YTSSPSVVFDGVHGTLNADESLPYPPKHNDSYSATKAEGEALILKANGRSGLLTCCIRPS 189
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR---M 245
++FGPGD +VP LV A+ G +KFIIG G N DFTYVENV HAHVCA AL S
Sbjct: 190 SIFGPGDKLMVPSLVTAARAGKSKFIIGDGSNFYDFTYVENVVHAHVCAERALASGGEVC 249
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
AG A+FITN+EPIKFW+F+S +LEGLGY+RP IK+P ++ I LV+ ++ LG
Sbjct: 250 AKAAGQAYFITNMEPIKFWEFMSQLLEGLGYERPSIKIPASLMMPIAYLVELAYKLLGPY 309
Query: 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357
+ V+L S RTFD A+ +GYSPVV L+EG+ TI SFSHL
Sbjct: 310 GMKVPVLTPSRVRLLSCNRTFDSSKAKDRLGYSPVVPLQEGIKRTIDSFSHL 361
|
|
| UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 139/360 (38%), Positives = 192/360 (53%)
Query: 5 EAIP--RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E IP R C V+ G GF+G+ +V +LLE G V V D Q +P
Sbjct: 20 EDIPKDRKCTVIGGSGFLGQHMVEQLLERGYA-VNVFDKRQGFD-NP------------- 64
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYV--DATDLNTDDFYNCYMIIVQGAKNVVTACR 120
R ++ D+ + + L+G STVF+ A N + + Y + G KNV+ CR
Sbjct: 65 -RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELF--YRVNYIGTKNVIETCR 121
Query: 121 ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-G 179
E V++L+ S+A V+F+G DI NG E L K D + K E VL AN+ D
Sbjct: 122 EAGVQKLILTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQEKTVLGANDPDKN 180
Query: 180 LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
LT A+RP +FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE
Sbjct: 181 FLTTAIRPHGIFGPRDPQLVPILIEAARKGKMKFVIGNGKNLVDFTFVENVVHGHILAAE 240
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299
L SR + G AF ITN EP+ FW FLS IL GL Y+ P +P V +Y+ LLV
Sbjct: 241 RL-SRDTGLGGKAFHITNDEPVPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLFV 299
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ V LA + C A+K +GY P+V++++ V T+QSF HL +
Sbjct: 300 MVISPVIQLQPTFTPMRVALAGTFHYYSCEKAKKLLGYQPLVTMDDAVERTVQSFHHLRK 359
|
|
| ZFIN|ZDB-GENE-050417-163 nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 137/351 (39%), Positives = 196/351 (55%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+GR LV RL++ G V V D Q+ +L P + ++
Sbjct: 10 KRCTVIGGSGFLGRHLVERLVDRGYT-VNVFDIRQAYEL-PGVT--------------FY 53
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q D+ D + L+ S VF+ + +DD + + G + V+ AC E V++L+
Sbjct: 54 QGDLCDKLALVMALKEVSIVFHCASPAPGSDDGALFQRVNIDGTRTVIQACHEAGVQKLI 113
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G+ DI NG E L K D + K + E LVL A + + G LT A+RP
Sbjct: 114 LTSSASVVFEGT-DIKNGKEDLPYAKKPIDYYTETKIKQEKLVLEACSKEKGFLTVAIRP 172
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+LV+ A+ G KFIIG G N+ DFTYVENV H H+ AAE L +
Sbjct: 173 HGIFGPRDPQLVPILVDTARRGKMKFIIGDGSNLVDFTYVENVVHGHILAAEHLKADS-P 231
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG-LRT 306
+ G A+ ITN EP++FWDF+S IL GLGY P LP +V+ I LL+ +I L L
Sbjct: 232 LCGQAYHITNDEPVRFWDFMSQILVGLGYSAPRYHLPYALVYGIALLLWFISLILRPLIQ 291
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357
+ + S + LA + C A++ +GY P+V L+E V T++S+ HL
Sbjct: 292 FKPTFSPMRVA-LAGTHHYYSCARAKQDMGYRPLVPLQEAVVRTVESYPHL 341
|
|
| MGI|MGI:1099438 Nsdhl "NAD(P) dependent steroid dehydrogenase-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 132/353 (37%), Positives = 189/353 (53%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LLE G V V D Q +P R ++
Sbjct: 27 KKCTVIGGSGFLGQHMVEQLLERGYT-VNVFDIHQGFD-NP--------------RVQFF 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+G STVF+ + +++ Y + G K V+ CRE V++L+
Sbjct: 71 IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLI 130
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A VVF+G DI NG E L K D + K E VL AN+ LT A+RP
Sbjct: 131 LTSSASVVFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRP 189
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L++ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +
Sbjct: 190 HGIFGPRDPQLVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDAA 248
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P + +Y+ L+ + +
Sbjct: 249 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
V LA + C A+K GY P+V+++E V T+QSF HL +D
Sbjct: 309 IQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVERTVQSFHHLRKD 361
|
|
| UNIPROTKB|F6XJP3 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 132/358 (36%), Positives = 192/358 (53%)
Query: 5 EAIPRT--CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
E +P C V+ G GF+G+ +V +LL G V V D Q +P
Sbjct: 20 EGLPNASKCTVIGGSGFLGQHMVEQLLARGYT-VNVFDMRQGFD-NP------------- 64
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
R ++ D+ + L+G STVF+ + ++++ Y + G KNV+ C+E
Sbjct: 65 -RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEA 123
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLL 181
V++L+ S+A V+F+G + I NG E L K D + K E VL AN+ L
Sbjct: 124 GVQKLILTSSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFL 182
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
T A+RP +FGP D QLVP+L+ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L
Sbjct: 183 TMAIRPHGIFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL 242
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
S+ +V+G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LLV +
Sbjct: 243 -SQDTAVSGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLVML 301
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
L V LA + C A+K +GY P+V++++ + T+QSF +L +
Sbjct: 302 LSPVIQLQPTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLRK 359
|
|
| UNIPROTKB|Q15738 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 131/352 (37%), Positives = 190/352 (53%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ C V+ G GF+G+ +V +LL G V V D Q D + L D S R + +
Sbjct: 38 KRCTVIGGSGFLGQHMVEQLLARGYA-VNVFDIQQGF--DNPQVRFFLGDLCS--RQDLY 92
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
L+G +TVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 93 PA-----------LKGVNTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLI 141
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRP 187
S+A V+F+G DI NG E L K D + K E VL AN+ + LT A+RP
Sbjct: 142 LTSSASVIFEGV-DIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRP 200
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ A+ G KF+IG+G+N+ DFT+VENV H H+ AAE L SR +
Sbjct: 201 HGIFGPRDPQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQL-SRDST 259
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
+ G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LL+ + +
Sbjct: 260 LGGKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVMVISPVIQ 319
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
V LA + C A+K +GY P+V++++ + T+QSF HL R
Sbjct: 320 LQPTFTPMRVALAGTFHYYSCERAKKAMGYQPLVTMDDAMERTVQSFRHLRR 371
|
|
| UNIPROTKB|E1C279 NSDHL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 135/355 (38%), Positives = 188/355 (52%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ CVV+ G GF+G+ +V +LL+ G V V D + D R ++
Sbjct: 10 KKCVVIGGSGFLGQHMVEKLLDKGYS-VNVFDIQKRFDHD---------------RVQFF 53
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
D+ + + L+ S F+ + ++D+ Y + G K V+ AC+E V++LV
Sbjct: 54 LGDLCNKEALLPALQDVSVAFHCASPAPSSDNKELFYKVNFMGTKAVIEACKEAGVQKLV 113
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRP 187
S+A VVF+G+ DI NG E L K D + K E VL AN+ D T A+RP
Sbjct: 114 LTSSASVVFEGT-DIKNGTEDLPYAKKPIDYYTETKILQEKEVLSANDPDNNFFTTAIRP 172
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+FGP D QLVP+L+ AK G KFIIG G+N+ DFTYVENV H H+ AAE L +
Sbjct: 173 HGIFGPRDPQLVPILIQAAKSGKMKFIIGDGKNLVDFTYVENVVHGHILAAEHL-RKDSP 231
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIIL---LVKWIHEKLGL 304
V G AF ITN EPI FW F+S IL GL Y P +P + +Y+ L LV W+ L +
Sbjct: 232 VCGKAFHITNDEPIPFWAFMSRILTGLNYDAPKYYIPYWLAYYLALFLSLVLWLLSPLII 291
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ V LA + C A++ +GY PVVSL+E + T+QS+ HL R
Sbjct: 292 IKPTFTPMR---VALAGTFHYYSCERAKRDMGYKPVVSLDEAIDRTLQSYPHLRR 343
|
|
| UNIPROTKB|E2QVH4 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 130/350 (37%), Positives = 189/350 (54%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
C V+ G GF+G+ +V +LL G V V D Q +P R ++
Sbjct: 40 CTVIGGSGFLGQHMVEQLLARGYT-VNVFDMRQGFD-NP--------------RVQFFLG 83
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
D+ + L+G STVF+ + ++++ Y + G KNV+ C+E V++L+
Sbjct: 84 DLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKEAGVQKLILT 143
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSN 189
S+A V+F+G + I NG E L K D + K E VL AN+ LT A+RP
Sbjct: 144 SSASVIFEGVN-IKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKRNFLTMAIRPHG 202
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVA 249
+FGP D QLVP+L+ A+ G KF+IG+GEN+ DFT+VENV H H+ AAE L S+ +V+
Sbjct: 203 IFGPRDPQLVPILIEAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHL-SQDTAVS 261
Query: 250 GMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309
G AF ITN EPI FW FLS IL GL Y+ P +P V +Y+ LLV + L
Sbjct: 262 GKAFHITNDEPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLVSLLVMLLSPVIQLQ 321
Query: 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
V LA + C A+K +GY P+V++++ + T+QSF +L +
Sbjct: 322 PTFTPMRVALAGTFHYYSCERARKVMGYRPLVTMDDAIERTVQSFHYLRK 371
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A9X4U2 | HSDD3_ARATH | 1, ., 1, ., 1, ., 1, 7, 0 | 0.5883 | 0.8907 | 0.9304 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 586 | |||
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-130 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 3e-80 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 4e-69 | |
| cd09812 | 339 | cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid | 6e-47 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 5e-33 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-32 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 2e-26 | |
| pfam02453 | 164 | pfam02453, Reticulon, Reticulon | 1e-25 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 9e-20 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-17 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 5e-15 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 8e-15 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-12 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-10 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-10 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 6e-10 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 7e-09 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 8e-09 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-08 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 2e-08 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 2e-08 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-08 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 7e-08 | |
| cd05251 | 242 | cd05251, NmrA_like_SDR_a, NmrA (a transcriptional | 1e-07 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-07 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 3e-07 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 4e-07 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 6e-07 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 8e-06 | |
| PLN00198 | 338 | PLN00198, PLN00198, anthocyanidin reductase; Provi | 1e-04 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-04 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 1e-04 | |
| PLN02583 | 297 | PLN02583, PLN02583, cinnamoyl-CoA reductase | 2e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 3e-04 | |
| PRK05865 | 854 | PRK05865, PRK05865, hypothetical protein; Provisio | 3e-04 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 4e-04 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 5e-04 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 7e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 8e-04 | |
| cd05244 | 207 | cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu | 0.001 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 0.001 | |
| PLN02650 | 351 | PLN02650, PLN02650, dihydroflavonol-4-reductase | 0.001 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.001 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 0.002 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 0.002 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 0.003 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 0.003 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-130
Identities = 170/351 (48%), Positives = 220/351 (62%), Gaps = 22/351 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+C+V+ G GF+GR LV +LL G V V D + +LDPS SSGR ++H
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPS----------SSGRVQFHT 50
Query: 70 VDVRDISQIKKVL--EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D ++K +G + VF+ + D ++D Y + VQG +NV+ ACR+C V++L
Sbjct: 51 GDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDL-YYKVNVQGTRNVIEACRKCGVKKL 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALR 186
VY S+A VVF+G DI NGDE+L K QD + KA AE LVL AN+ GLLTCALR
Sbjct: 110 VYTSSASVVFNG-QDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALR 168
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
P+ +FGPGD QLVP L+ AK G TKF IG G N+ DFTYVENVAHAH+ AA+AL S
Sbjct: 169 PAGIFGPGDRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADALLSSSH 228
Query: 247 S--VAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLG 303
+ VAG AFFITN EPI FWDF I EGLGY+R P IKLP V Y+ L++W + LG
Sbjct: 229 AETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEWTCKVLG 288
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + V L TR F+ A+K +GY+PVV+LEEG+ T+Q F
Sbjct: 289 KEPT---FTP-FRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 3e-80
Identities = 109/287 (37%), Positives = 142/287 (49%), Gaps = 22/287 (7%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+GR +V LL G+ VRV D S LL D Y +
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRV--------FDLRFSPELLEDFSKLQVITYIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
DV D +++ L+G+ V + A D+ + V+G +NV+ AC + VR LV
Sbjct: 53 DVTDKQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLV 112
Query: 129 YNSTADVVFD--GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DG--LL 181
Y S+ +VV I NGDET QD + KA AE LVL AN +G L
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 182 TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
TCALRP+ +FG GD L P LV L K G KF G +SD YV NVA AH+ AA AL
Sbjct: 173 TCALRPAGIFGEGDPFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAWAHILAARAL 232
Query: 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRP-FIKLP 284
S+AG +FI++ P + DF +L+ LG + P IKLP
Sbjct: 233 QDPKKASSIAGQFYFISDDTPHNSYDDFNRTLLKALGLRLPSSIKLP 279
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 4e-69
Identities = 125/350 (35%), Positives = 184/350 (52%), Gaps = 24/350 (6%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ +V G GF G LV +LLE G VR D ++ ++ E+ +
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPP----GEALSAWQHPNI-----EFLK 51
Query: 70 VDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+ D + +++ L GA VF+ A D Y + + V G +NV+ AC+ C V++
Sbjct: 52 GDITDRNDVEQALSGADCVFHTAAIVPLAGPRDLY--WEVNVGGTQNVLDACQRCGVQKF 109
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
VY S++ V+F G +IHNGDETL D+ + KA AE +VL AN D LLTCALRP
Sbjct: 110 VYTSSSSVIFGGQ-NIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL--DSRM 245
+ +FGPGD LVP+L A+ G KF+ G G N+ DFTYV N+AHAH+ AA AL
Sbjct: 169 AGIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALVKGK-- 226
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGY-QRPFIKLPTGVVWYIILLVKWIHEKLGL 304
+++G +FIT+ EP ++ L + + LG+ RP I+L + + LL + + LG
Sbjct: 227 -TISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFMLG- 284
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ S + F AQK +GY+P S EEG+ T+ +
Sbjct: 285 PYFVFSPFYVRALVT---PMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-47
Identities = 108/345 (31%), Positives = 179/345 (51%), Gaps = 33/345 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ ++ G G+ G L L + G + D LP+ + ++ Q
Sbjct: 1 SVLITGGGGYFGFRLGCALAKSG---------VHVILFDIRRPQQELPEGI-----KFIQ 46
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRR 126
DVRD+SQ++K + G VF++ + ++ + N +I V+G +N++ C +V R
Sbjct: 47 ADVRDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVRRRVPR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD----LKAQAEALVLFANNI----- 177
L+Y ST +V+F G I NGDE+L + DL D K+ AE LVL ANN+
Sbjct: 107 LIYTSTFNVIF-GGQPIRNGDESLP--YLPLDLHVDHYSRTKSIAEQLVLKANNMPLPNN 163
Query: 178 DGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G+L TCALRP+ ++GPG+ + +P +V+ + G F+ G +++ +F +V+N+ AH+
Sbjct: 164 GGVLRTCALRPAGIYGPGEQRHLPRIVSYIEKGLFMFVYGDPKSLVEFVHVDNLVQAHIL 223
Query: 237 AAEALDSRMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295
AAEAL + +A G A+FI++ P+ ++F ++EGLGY P ++LP +V++ L
Sbjct: 224 AAEALTTAKGYIASGQAYFISDGRPVNNFEFFRPLVEGLGYSFPSLRLPLSLVYFFAFLT 283
Query: 296 KWIHEKLGLRTYN-HSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
+ +H LG N L V T F A+ +GY P
Sbjct: 284 EMVHFALG-PICNFQPLLTRTEVYKTGVTHYFSIEKARAELGYEP 327
|
An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-33
Identities = 86/356 (24%), Positives = 126/356 (35%), Gaps = 62/356 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G LV RLL G VR D E+ +D+ D
Sbjct: 8 GAGFIGSHLVERLLAAGH-DVRGLD------------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ ++ +G D N D + V G N++ A R V+R V+
Sbjct: 55 DLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFA 114
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+ VV+ G DE L + + K AE L+ + GL LRP NV
Sbjct: 115 SSVSVVY-GDPPPLPIDEDLG-PPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172
Query: 191 FGPGD-----TQLVPLLVNLAKPGWTKF-IIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+GPGD + +V + G I G G DF YV++VA A + A E D
Sbjct: 173 YGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG 232
Query: 245 MVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303
F I + I + + E +G + P I YI L +
Sbjct: 233 -------VFNIGSGTAEITVRELAEAVAEAVGSKAPLIV-------YIPLGRRGD----- 273
Query: 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ D A+ +G+ P VSLEEG++ T++
Sbjct: 274 ----------------LREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLE 313
|
Length = 314 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-32
Identities = 101/370 (27%), Positives = 161/370 (43%), Gaps = 47/370 (12%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
C+V G GF+G+ ++ LLE + + +RV D +L S ++
Sbjct: 2 CLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTD-----I 56
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFY-----NCYMIIVQGAKNVVTACRECK 123
+ D++D+S + + +G S V + A D F + V G + V+ AC +
Sbjct: 57 EGDIKDLSFLFRACQGVSVVIHTAAI---VDVFGPPNYEELEEVNVNGTQAVLEACVQNN 113
Query: 124 VRRLVYNSTADVVFDGS--HDIHNG--DETLTCCWKFQDLMCDLKAQAEALVLFAN---- 175
V+RLVY S+ +V I NG D K AE +VL AN
Sbjct: 114 VKRLVYTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP--YASSKLLAENIVLNANGAPL 171
Query: 176 -NIDGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFII-GSGENMSDFTYVENVA 231
L+TCALRP ++G G + + + + L GW I GSG N YV NVA
Sbjct: 172 KQGGYLVTCALRPMYIYGEG-SHFLTEIFDFLLTNNGWLFPRIKGSGVN--PLVYVGNVA 228
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE---GLGYQRPFIKLPTGVV 288
AH+ AA+AL ++ G +FI++ P + + L GL + + +P ++
Sbjct: 229 WAHILAAKALQVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRLKTSWWYVPLFLL 288
Query: 289 WYIILL---VKWIHEKLGLR---TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS 342
+++ L V ++ LR Y + + V L + TF + AQ+H GY P+ S
Sbjct: 289 YFLAFLLEIVSFL-----LRPYVKYRPRYNR-HAVALTNSMFTFSYLKAQRHFGYMPLFS 342
Query: 343 LEEGVSSTIQ 352
EE T +
Sbjct: 343 WEESKERTAK 352
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 88/350 (25%), Positives = 129/350 (36%), Gaps = 52/350 (14%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
GF+G +LV LL G + +VR L E + D+ D
Sbjct: 8 GFLGSNLVRALLAQGYRVRALVRSGSDAVLLD---------------GLPVEVVEGDLTD 52
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + ++G VF++ A T L D Y V+G +NV+ A E VRR+V+ S+
Sbjct: 53 AASLAAAMKGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNVLDAALEAGVRRVVHTSSI 112
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVL-FANNIDGLLTCALRPSN 189
+ G DE T W + D K AE VL A GL + PS
Sbjct: 113 AAL--GGPPDGRIDE--TTPWNERPFPNDYYRSKLLAELEVLEAAAE--GLDVVIVNPSA 166
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
VFGPGD L V G G + F V +VA H+ A E
Sbjct: 167 VFGPGDEGPTSTGLDVLDYLNGKLPAYPPGG---TSFVDVRDVAEGHIAAMEK------G 217
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV---VWYIILLVKWIHEKLGL 304
G + + E + F + E G + P +P + V + L + K L
Sbjct: 218 RRGERYILGG-ENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGKPPL 276
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
T ++ R + A++ +GYSP LEE + T+
Sbjct: 277 LTP-------RTARVLRRNYLYSSDKARRELGYSP-RPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|217046 pfam02453, Reticulon, Reticulon | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIF 443
VAD+LLW+D KK+ F L++++ F L G +L S + LLLL AV F L +
Sbjct: 1 VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTF-LWRLAKKLL 59
Query: 444 GFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSK 503
+ + P LSE +++ + L N + +R L G+D K A L+L
Sbjct: 60 NAVPEPLDPD-VTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLS 118
Query: 504 LM--LQSFTWSIGLALVFAFTAFFVYEQYEPEIDGLAKFLFNYLKK 547
+ L S + + ++ AFT +YE+Y+ EID + +KK
Sbjct: 119 YLGSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164
|
Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 9e-20
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 39/248 (15%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLL+ G ++ + +S L+ GR +H+ D
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNT-------------GRIRFHEGD 48
Query: 72 VRDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++L V ++ A + +D + V G ++ A R V+R
Sbjct: 49 LTDPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKR 108
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVLFANNIDGL 180
V+ S+++V D + E + L K AE LV GL
Sbjct: 109 FVFASSSEVYGDVADPP--ITED--------TPLGPLSPYAAAKLAAERLVEAYARAYGL 158
Query: 181 LTCALRPSNVFGPGD-----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
LR NV+GPG+ T ++P L+ G ++G G DF YV++VA A +
Sbjct: 159 RAVILRLFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAIL 218
Query: 236 CAAEALDS 243
A E D
Sbjct: 219 LALEHPDG 226
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 94/359 (26%), Positives = 139/359 (38%), Gaps = 71/359 (19%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G V V D+ L + +L ++ +
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGH-EVIVLDN-----LSTGKKENLPEVK---PNVKFIEG 52
Query: 71 DVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
D+RD ++ EG VF+ A + +D + + V G N++ A R+ V+R
Sbjct: 53 DIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRF 112
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCC----WKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
VY S++ V G DE + K E + GL T
Sbjct: 113 VYASSSSVY--GDPPYLPKDEDHPPNPLSPYAVS------KYAGELYCQVFARLYGLPTV 164
Query: 184 ALRPSNVFGPG-DTQ-----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+LR NV+GP D ++P+ + A G I G GE DFTYVE+V A++ A
Sbjct: 165 SLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLA 224
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP--TGVVWYIILLV 295
A A G + I + + +I E LG + + P G V
Sbjct: 225 ATA------GAGGEVYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDV------- 271
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HSL D A+K +G+ P VS EEG+ T++ F
Sbjct: 272 ------------RHSL--------------ADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-15
Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 49/233 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G LV RLLE G H+V
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERG-----------------------------------HEV 25
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
V D + V+ A+ V + D+ + V G N++ A R+ V+R VY
Sbjct: 26 VVIDRLDV--VVHLAALV----GVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYA 79
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V+ E + K AE L+ GL LR +NV
Sbjct: 80 SSA-SVYG---SPEGLPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 191 FGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+GPG +V + A G + G G DF +V++V A + A E
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALE 188
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V GF+G LV RLL+ G VR T + D + LL + R + + D+
Sbjct: 3 VTGASGFIGSWLVKRLLQRGY-TVRAT--VRDPG-DEKKVAHLLELEGAKERLKLFKADL 58
Query: 73 RDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMI--IVQGAKNVVTACRECK-VRRL 127
D ++G VF+V A+ D +++D MI V+G NV+ AC + K V+R+
Sbjct: 59 LDYGSFDAAIDGCDGVFHV-ASPVDFDSEDPEE-EMIEPAVKGTLNVLEACAKAKSVKRV 116
Query: 128 VY-NSTADVVF-DGSHDIHNGDETLTCCW-------KFQDLMCDLKAQAEALVLFANNID 178
V+ +S A VV+ + DE+ CW K + K AE +
Sbjct: 117 VFTSSVAAVVWNPNRGEGKVVDES---CWSDLDFCKKTKLWYALSKTLAEKAAWEFAEEN 173
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAH 234
GL + PS V GP + L + G+ E + + V++VA AH
Sbjct: 174 GLDLVTVNPSLVVGPFLQPSLNSSSQLI----LSLLKGNAEMYQNGSLALVHVDDVADAH 229
Query: 235 VCAAEALDSR 244
+ E +
Sbjct: 230 ILLYEKPSAS 239
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 42/245 (17%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G GF+G LV LLE G VRV D S+ P L G +Y + D
Sbjct: 3 LIVGGNGFIGSHLVDALLEEG-PQVRVFDR------------SIPPYELPLGGVDYIKGD 49
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA------CRECKVR 125
+ + ++ L G TV ++ +T N I+ NV C +
Sbjct: 50 YENRADLESALVGIDTVIHLASTTNPATSNKN---PILDIQTNVAPTVQLLEACAAAGIG 106
Query: 126 RLVYNSTADVVFDGSHDIHNGDETLT----CCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
++++ S+ V+ G + E+ + L E + + GL
Sbjct: 107 KIIFASSGGTVY-GVPEQLPISESDPTLPISSYGISKLA------IEKYLRLYQYLYGLD 159
Query: 182 TCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
LR SN +GPG Q ++P+ +N G I G GE++ D+ Y++++ A
Sbjct: 160 YTVLRISNPYGPG--QRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEAL 217
Query: 235 VCAAE 239
+
Sbjct: 218 MALLR 222
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 89/339 (26%), Positives = 132/339 (38%), Gaps = 47/339 (13%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--LPDSLSSGRAEYHQV 70
V GFVG ++V LLE G VRV L S+ +L L + G
Sbjct: 5 VTGATGFVGSAVVRLLLEQG-EEVRV------LVRPTSDRRNLEGLDVEIVEG------- 50
Query: 71 DVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD + ++K + G +F+V A L D Y V+G +N++ A E V R+VY
Sbjct: 51 DLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110
Query: 130 NST-ADVVFDGSHDIHNGDETLTCCWKFQDLM---CDLKAQAEALVLFANNIDGLLTCAL 185
S+ A + G DET D++ K AE L GL +
Sbjct: 111 TSSVATLGVRGDGTP--ADETTPS--SLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIV 166
Query: 186 RPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242
PS GP D + P ++V+ G + +G N+ V++VA H+ A E
Sbjct: 167 NPSTPIGPRDIKPTPTGRIIVDFLN-GKMPAYVDTGLNLVH---VDDVAEGHLLALERGR 222
Query: 243 S--RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHE 300
R +I E + L + E G P +KLP + +L V W E
Sbjct: 223 IGER---------YILGGENLTLKQILDKLAEITGRPAPRVKLPRWL----LLPVAWGAE 269
Query: 301 KLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP 339
L T V++A + F A + +GY
Sbjct: 270 ALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQ 308
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 73/358 (20%), Positives = 130/358 (36%), Gaps = 60/358 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V GF+G L RLL G VR D S ++ L D+ R + D
Sbjct: 3 LVTGADGFIGSHLTERLLREG-HEVRALDIYNSF------NSWGLLDNAVHDRFHFISGD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNC----YMIIVQGAKNVVTACRECKVRRL 127
VRD S+++ +++ VF++ A + Y V G NV+ A +R+
Sbjct: 56 VRDASEVEYLVKKCDVVFHL-AALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRV 114
Query: 128 VYNSTADVV-------FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
V+ ST++V D H + + K + K A+ L GL
Sbjct: 115 VHTSTSEVYGTAQDVPIDEDHPLLYIN-------KPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 181 LTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+RP N +GP ++P +++ G +G G DF +V++ A +
Sbjct: 168 PVTIIRPFNTYGPRQSARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDIL 227
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+A+ G + E I + ++ + ++L+ +
Sbjct: 228 DAI-----EAVGEIINNGSGEEISIGNPAVELIVEELGE--------------MVLIVYD 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIA-AQKHIGYSPVVSLEEGVSSTIQSFS 355
+ Y+ R I A++ +G+ P SL +G+ TI+ F
Sbjct: 269 DHREYRPGYSEV------------ERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWFK 314
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 47/189 (24%), Positives = 68/189 (35%), Gaps = 19/189 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G +GR L RL + I LD S + EY ++D
Sbjct: 2 LVTGAAGGLGRLLARRLAASPRVI-------GVDGLDRR------RPPGSPPKVEYVRLD 48
Query: 72 VRDISQIKKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+RD + E + A L+ D + I V G +NV+ AC V R+V
Sbjct: 49 IRDPAAADVFREREADAVVHLAFILDPPRDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108
Query: 131 STADVVFDGSHD--IHNGDETLTCCWKFQDLMCDLKAQAEALV-LFANNIDGLLTCALRP 187
S+ V + D L +F KA+ E L+ F L LRP
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAPLRGSPEFAY--SRDKAEVEQLLAEFRRRHPELNVTVLRP 166
Query: 188 SNVFGPGDT 196
+ + GPG
Sbjct: 167 ATILGPGTR 175
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 65/348 (18%), Positives = 106/348 (30%), Gaps = 60/348 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
VL G +GR + L G + V+ S L P E D
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSRSGSKLAWLPG--------------VEIVAADA 49
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D S + GA +++ T + +NVV A +LV
Sbjct: 50 MDASSVIAAARGADVIYHCANPAYTRWEEL------FPPLM--ENVVAAAEAN-GAKLVL 100
Query: 130 NSTADVVFDGSHDIHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
V G E K + ++A+ E +L A+ + +R
Sbjct: 101 PGN--VYMYGPQAGSPITEDTPFQPTTRKGR-----IRAEMEERLLAAHAKGDIRALIVR 153
Query: 187 PSNVFGPGDTQLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245
+ +GPG A G T G+ + ++TY+ +VA A V AE D+
Sbjct: 154 APDFYGPGAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDA-- 211
Query: 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305
G A+ + I + ++I G +P + L + E
Sbjct: 212 ---FGEAWHLPGAGAITTRELIAIAARAAGRPPKVRVIPKWTLRLAGLFDPLMRE----- 263
Query: 306 TYNHSLSACYIVQLASRTRT---FDCIAAQKHIGYSPVVSLEEGVSST 350
IV++ D + G P L+E + T
Sbjct: 264 ----------IVEMMYLWEEPFILDSSKLEATFGEIPHTPLDEAIRQT 301
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 56/235 (23%), Positives = 87/235 (37%), Gaps = 53/235 (22%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIV---RVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V GF+GR +V RL + G ++ R + L + G+
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLV-----------MGDLGQVL 50
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNT--DDFYNCYMIIVQGAKNVVTACRECKV 124
+ + D+RD I+K LEG+ V + T F + + V+G + + A +E V
Sbjct: 51 FVEFDLRDDESIRKALEGSDVVINLVGRLYETKNFSFED---VHVEGPERLAKAAKEAGV 107
Query: 125 RRLVYNST--ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL--FANNIDGL 180
RL++ S AD S + + KA+ E V F
Sbjct: 108 ERLIHISALGADAN-SPSKYLRS------------------KAEGEEAVREAFPEAT--- 145
Query: 181 LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI--IGSGENMSDFTYVENVAHA 233
+RPS VFG D + + L + F IG G+ YV +VA A
Sbjct: 146 ---IVRPSVVFGRED-RFLNRFAKL--LAFLPFPPLIGGGQTKFQPVYVGDVAEA 194
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 1e-08
Identities = 73/255 (28%), Positives = 105/255 (41%), Gaps = 29/255 (11%)
Query: 1 MPFDEAIP--RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSL 55
MP D A P +T V G++ +V LLE G K VR D ++ L E
Sbjct: 1 MPVDVASPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG--- 57
Query: 56 LPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNV 115
R + D++D +K ++G VF+ + TDD V GAK V
Sbjct: 58 -----GKERLILCKADLQDYEALKAAIDGCDGVFHTASP--VTDDPEQMVEPAVNGAKFV 110
Query: 116 VTACRECKVRRLVYNSTADVVF-DGSHDIHN-GDET----LTCCWKFQDLMCDLKAQAEA 169
+ A E KV+R+V S+ V+ D + D DE+ L C ++ C K AE
Sbjct: 111 INAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQ 170
Query: 170 LVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
G+ L P V GP L P +N + K++ GS + ++ T
Sbjct: 171 AAWETAKEKGVDLVVLNPVLVLGP---PLQP-TINASLYHVLKYLTGSAKTYANLTQAYV 226
Query: 227 -VENVAHAHVCAAEA 240
V +VA AHV EA
Sbjct: 227 DVRDVALAHVLVYEA 241
|
Length = 342 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 42/189 (22%), Positives = 59/189 (31%), Gaps = 41/189 (21%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
V+ G GR LV LL G + R + S P
Sbjct: 2 AVIGATGKTGRRLVKELLARGHQVTALSR--------------NPSKAPAP----GVTPV 43
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q D+ D++ + + L G V VDA DD G K+++ A VRR+V
Sbjct: 44 QKDLFDLADLAEALAGVDAV--VDAFGARPDD--------SDGVKHLLDAAARAGVRRIV 93
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S A + D +A+A A L GL +RP
Sbjct: 94 VVSAAGLYRDEPG--------TFRLDDAPLFPPYARAKAAAEELLRA--SGLDWTIVRPG 143
Query: 189 NVFGPGDTQ 197
+F
Sbjct: 144 ALFDEEGET 152
|
Length = 182 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 34/183 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+L GF+GR+L LLE G +VR T +P +
Sbjct: 3 ILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEP---------------VAVVE 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D+RD+ + ++G V ++ +T DF V+G +NV+ A +E V+ ++
Sbjct: 48 GDLRDLDSLSDAVQGVDVVIHLAGAPRDTRDFCEVD---VEGTRNVLEAAKEAGVKHFIF 104
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
S+ GD +KA+ EA++ A L +RP
Sbjct: 105 ISSLGA---------YGDLHEETEPSPSSPYLAVKAKTEAVLREA----SLPYTIVRPGV 151
Query: 190 VFG 192
++G
Sbjct: 152 IYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 109 VQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL----- 163
V G ++ A R+ V+R V+ ST D V+ D ET +
Sbjct: 102 VLGTYTLLEAARKYGVKRFVHIST-DEVYGDLLDDGEFTET--------SPLAPTSPYSA 152
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPG--DTQLVPLLVNLAKPGWTKFIIGSGEN 220
KA A+ LV + GL R SN +GP +L+PL + A G I G G N
Sbjct: 153 SKAAADLLVRAYHRTYGLPVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLN 212
Query: 221 MSDFTYVENVAHA 233
+ D+ YVE+ A A
Sbjct: 213 VRDWLYVEDHARA 225
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 75/339 (22%), Positives = 128/339 (37%), Gaps = 58/339 (17%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+GR+LV +LL G+ + + + +PS + LPD S VD
Sbjct: 9 GFIGRALVDKLLSRGEEVRIAVRNAE--NAEPSVVLAELPDIDSFTDLF-LGVDA----- 60
Query: 78 IKKVLEGASTVFYVDATDLNTDDFY---NCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
V+ A+ V ++ + Y N + + + A V+R V+ S+
Sbjct: 61 ---VVHLAARVHVMNDQGADPLSDYRKVN-----TELTRRLARAAARQGVKRFVFLSSVK 112
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLM---CDL---KAQAEALVLFANNIDGLLTCALRPS 188
V NG+ T+ + D K +AE +L DG+ LRP
Sbjct: 113 V---------NGEGTVGAPFDETDPPAPQDAYGRSKLEAERALLELGASDGMEVVILRPP 163
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV-CAAEALDSRMVS 247
V+GPG L+ L G G+ +N ++N+ A C +
Sbjct: 164 MVYGPGVRGNFARLMRLIDRG-LPLPPGAVKNRRSLVSLDNLVDAIYLCISLP------K 216
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
A F +++ P+ + + I LG + +P G L+++ + LG R
Sbjct: 217 AANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAG-------LLRFAAKLLGKR-- 267
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
++Q + +D Q +G+ P +SLEEG
Sbjct: 268 -------AVIQRLFGSLQYDPEKTQNELGWRPPISLEEG 299
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G G S+V LL+ VR L DP +S +L++ E Q D
Sbjct: 2 LVFGATGKQGGSVVRALLKDPGFKVRA------LTRDP---SSPAAKALAAPGVEVVQGD 52
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+G VF L TD + + KNVV A + V+ V++S
Sbjct: 53 LDDPESLEAALKGVYGVF------LVTDFWEAGGEDEIAQGKNVVDAAKRAGVQHFVFSS 106
Query: 132 TADV 135
DV
Sbjct: 107 VPDV 110
|
NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 57/253 (22%), Positives = 87/253 (34%), Gaps = 41/253 (16%)
Query: 13 VLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQ--SLQLDPSESNSLLPDSLSSGRAEY 67
V GFV +V +LLE G + VR + + LD L GR E
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD-------LDA--KPGRLEL 53
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECK-VR 125
D+ D +V++G + VF+V ++ D + G N + A K V+
Sbjct: 54 AVADLTDEQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVK 113
Query: 126 RLVYNSTADVVF--DGSHDIHNGDETLTCCWKFQDLMCDL----------KAQAEALVL- 172
R V S+A V + + DE W ++ D K AE
Sbjct: 114 RFVLTSSAGSVLIPKPNVEGIVLDEK---SWNLEEFDSDPKKSAWVYAASKTLAEKAAWK 170
Query: 173 FA--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSD---FTY 226
FA NNID + P+ G P A T + + + +
Sbjct: 171 FADENNID---LITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVH 227
Query: 227 VENVAHAHVCAAE 239
V ++ AH+ E
Sbjct: 228 VVDICLAHIGCLE 240
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 64/298 (21%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 11 CVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
+V G+VG LV RLL+ G + +VR + D S R
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPEKLA--------------DRPWSERVTV 46
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
+ D+ D ++ LEG T +Y+ + + DF + A+N A R V+R+
Sbjct: 47 VRGDLEDPESLRAALEGIDTAYYLVHSMGSGGDFEE---ADRRAARNFARAARAAGVKRI 103
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-ALVLFANNIDGLLTCALR 186
+Y I G+E L L+++AE +L A + LR
Sbjct: 104 IYLGGL---------IPKGEE----------LSPHLRSRAEVGEILRAGGVP---VTELR 141
Query: 187 PSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
+ + G G LV L + P W + +V V A +
Sbjct: 142 AAVIIGSGSASFEMVRYLVERLPVMITPRWVN-------TPCQPIAIRDVLEYLVAALDR 194
Query: 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
+ AG F I + + + D + E G +R + +P V L W+
Sbjct: 195 PAT-----AGETFEIGGPDVLSYKDMMERFAEVRGLRRWILPVP---VLTPRLSSLWV 244
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 68/301 (22%), Positives = 110/301 (36%), Gaps = 43/301 (14%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
V G GF+GR LV RLLE G +VR ++ + + L + R
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHER-------IEEAGLEADRVR- 52
Query: 68 HQVDVRDISQI---------KKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVT 117
V D++Q +++ V + A D + + + G ++V+
Sbjct: 53 --VLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAP-NEDAWRTNIDGTEHVLE 109
Query: 118 ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
++R Y STA V G+ + + + L F++ KA+AE LV A
Sbjct: 110 LAARLDIQRFHYVSTAYV--AGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQ 167
Query: 178 DGLLTCALRPSNVFGP---GDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
L RPS V G G + L LL LAK G + G+ + V+ V
Sbjct: 168 IPLTV--YRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYV 225
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPI---KFWDFLSIILEGLGYQRPFIKLPTGV 287
A A V ++ ++ G F +T+ P + D G + P
Sbjct: 226 ADAIVYLSKKPEA-----NGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMNEPNAS 280
Query: 288 V 288
+
Sbjct: 281 L 281
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 64/285 (22%), Positives = 105/285 (36%), Gaps = 55/285 (19%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+ +V +LL+ G VR T + S ++ +LL + + R E+ VD D++
Sbjct: 9 GFIASHIVEQLLKAG-YKVRGTVRSLS---KSAKLKALLKAAGYNDRLEFVIVD--DLTA 62
Query: 78 ---IKKVLEG-------ASTVFYVDATDLNTDDFYNCYMII--VQGAKNVVTACRECK-V 124
+ L+G AS + DD +I V+G NV+ A + V
Sbjct: 63 PNAWDEALKGVDYVIHVASPFPFTGPD--AEDD-----VIDPAVEGTLNVLEAAKAAGSV 115
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLM---CDLKAQAE--ALVLF 173
+R+V S+ V D + + + T + + K AE A
Sbjct: 116 KRVVLTSSVAAVGDPTAEDP--GKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEFV 173
Query: 174 ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGEN-----MSDFTYV 227
N + P V GP L+ +N + K + G + V
Sbjct: 174 KENKPKFELITINPGYVLGP---SLLADELN-SSNELINKLLDGKLPAIPPNLPFGYVDV 229
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272
+VA AHV AL+S AG F ++ P F + ++ E
Sbjct: 230 RDVADAHV---RALESP--EAAGQRFIVSA-GPFSFQEIADLLRE 268
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 77/387 (19%), Positives = 118/387 (30%), Gaps = 122/387 (31%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+V GF+G L RL G + + P++ + E+H
Sbjct: 2 RALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDD------------EFHL 49
Query: 70 VDVRDISQIKKVLEGASTVFYVDA--------TDLNTDDFYNCYMIIVQGAKNVVTACRE 121
VD+R++ K EG VF++ A + YN +I N++ A R
Sbjct: 50 VDLREMENCLKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLI----NFNMLEAARI 105
Query: 122 CKVRRLVYNSTA-------------------DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162
V R ++ S+A D D + W+
Sbjct: 106 NGVERFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYG--------WE------- 150
Query: 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLL----VNLAKPGWTKF 213
K E L N G+ T +R N++GP G + P V AK G
Sbjct: 151 -KLATERLCQHYNEDYGIETRIVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFE 209
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEAL--------DSRMVSVAGMAFFITNLEPIKFWD 265
I G G FTY+++ E+ MVS+ +A + +
Sbjct: 210 IWGDGLQTRSFTYIDDCVEGLRRLMESDFGEPVNLGSDEMVSMNELAEMVLSFS----GK 265
Query: 266 FLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325
L II + P P GV R R
Sbjct: 266 PLEII-----HHTP---GPQGV----------------------------------RGRN 283
Query: 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
D ++ +G+ P LEEG+ T
Sbjct: 284 SDNTLLKEELGWEPNTPLEEGLRITYF 310
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 73/256 (28%), Positives = 112/256 (43%), Gaps = 35/256 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T V+ G GF+ L+ LL+ G + +T + + + L G +
Sbjct: 10 KTACVIGGTGFLASLLIKLLLQKGYAV-----NTTVRDPENQKKIAHLRALQELGDLKIF 64
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLN--TDDFYNCYMI--IVQGAKNVVTACRECK- 123
D+ D + + G VF+V AT +N ++D N MI +QG NV+ AC + K
Sbjct: 65 GADLTDEESFEAPIAGCDLVFHV-ATPVNFASEDPEN-DMIKPAIQGVHNVLKACAKAKS 122
Query: 124 VRRLVYNSTADVV----FDGSHDIHNGD-----ETLTCCWKFQDLMCDLKAQAE-ALVLF 173
V+R++ S+A V G+ + N E LT K AE A F
Sbjct: 123 VKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKF 182
Query: 174 A--NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT--KFIIGSGENMS------D 223
A NNID L+T P+ + GP T +P ++LA T +F+I + M
Sbjct: 183 AEENNID-LITVI--PTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSIS 239
Query: 224 FTYVENVAHAHVCAAE 239
T+VE+V AH+ AE
Sbjct: 240 ITHVEDVCRAHIFLAE 255
|
Length = 338 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 38/277 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G LV RLLE G V V D+ S + + E + + + D
Sbjct: 3 LVTGGAGFIGSHLVDRLLEEGN-EVVVVDNLSSGRRENIEP------EFENKAFRFVKRD 55
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTD----------DFYNCYMIIVQGAKNVVTACRE 121
+ D + K + TVF++ A N D D V NV+ A R
Sbjct: 56 LLDTA-DKVAKKDGDTVFHLAA---NPDVRLGATDPDIDLEEN----VLATYNVLEAMRA 107
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
V+R+V+ S++ V G + E + K AEAL+ ++ G
Sbjct: 108 NGVKRIVFASSSTVY--GEAKVIPTPEDYPP--LPISVYGASKLAAEALISAYAHLFGFQ 163
Query: 182 TCALRPSNVFGPGDTQ-LVPLLVN--LAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
R +N+ GP T ++ +N P ++G G + YV + A + A
Sbjct: 164 AWIFRFANIVGPRSTHGVIYDFINKLKRNPN-ELEVLGDGRQRKSYLYVSDCVDAMLLAW 222
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275
E V++ F + N + I + I++E LG
Sbjct: 223 EKSTEG-VNI----FNLGNDDTISVNEIAEIVIEELG 254
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 54/258 (20%), Positives = 82/258 (31%), Gaps = 61/258 (23%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQ-LDPS-ESNSLLPDSLSSGRAEYHQV 70
GF+G+ L+ +LL C+VR D +L+ L L + R +
Sbjct: 6 GFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALER-----I 60
Query: 71 DVR--DISQIKKVLEGASTVFYVDATDL--NTDDFYNC-------------YMIIVQGAK 113
D+S+ L D +L D + V G +
Sbjct: 61 IPVAGDLSEPNLGLSDE------DFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTR 114
Query: 114 NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---------- 163
V+ ++ K + STA +G ++ K + L
Sbjct: 115 EVLRLAKQMKKLPFHHVSTA--YVNGERGGLLEEKPY----KLDEDEPALLGGLPNGYTQ 168
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFG-------PGDTQLVPLLVNLAKPGWTKFII 215
K AE LV A GL RPS + G GD L+ A G I+
Sbjct: 169 SKWLAEQLVREAA--GGLPVVIYRPSIITGESRTGWINGDDFGPRGLLGGAGLGVLPDIL 226
Query: 216 GSGENMSDFTYVENVAHA 233
G + D V+ VA+A
Sbjct: 227 GDPDARLDLVPVDYVANA 244
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 60/256 (23%), Positives = 94/256 (36%), Gaps = 42/256 (16%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS 62
FDE+ CV ++ G+VG LV RLL G + +++ S
Sbjct: 2 FDESSKSVCV-MDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGL----SCEE 56
Query: 63 GRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCY---MII--VQGAKNVVT 117
R + VD D I L+G S +F + Y Y M+ V+ A NV+
Sbjct: 57 ERLKVFDVDPLDYHSILDALKGCSGLFCC----FDPPSDYPSYDEKMVDVEVRAAHNVLE 112
Query: 118 ACRECK-VRRLVYNSTADVVF---DGSHDIHNGDET----LTCCWKFQDLMCDLKAQAEA 169
AC + + ++V+ S+ V D + DE C KF+ K +E
Sbjct: 113 ACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEK 172
Query: 170 LVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD---FT 225
+A +D G+ ++ + GP TQ P L A+ M +
Sbjct: 173 TA-WALAMDRGVNMVSINAGLLMGPSLTQHNPYLKGAAQ-------------MYENGVLV 218
Query: 226 YV--ENVAHAHVCAAE 239
V + AH+ A E
Sbjct: 219 TVDVNFLVDAHIRAFE 234
|
Length = 297 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 20/118 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G VGR +V LL+ G + +VR DPS++ L D+ D
Sbjct: 9 GKVGRHVVRELLDRGYQVRALVR----------DPSQAEKLEAAGAEVVVG-----DLTD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ LEG V + A + G N++ A ++ V+R V S+
Sbjct: 54 AESLAAALEGIDAV--ISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G +GR L RLL G +V + PDS S A++ D+
Sbjct: 5 VTGASGVLGRGLTARLLSQGHEVVGIARHR--------------PDSWPS-SADFIAADI 49
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
RD + ++ + GA V + A +D N + G NV+ A E R+V+ S+
Sbjct: 50 RDATAVESAMTGADVVAHC-AWVRGRNDHIN-----IDGTANVLKAMAETGTGRIVFTSS 103
|
Length = 854 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 37/136 (27%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQ----LDPSESNSLLPDSLSSGRAEYHQVDVR 73
GF+G LV L+ G VR S LD S + E D+R
Sbjct: 8 GFIGSHLVEALVRQG-YEVRAFVLYNSFNSWGWLDTSPPEVK-------DKIEVVTGDIR 59
Query: 74 DISQIKKVLEGASTVFYVDA--------------TDLNTDDFYNCYMIIVQGAKNVVTAC 119
D ++K ++G VF++ A D N V G NV+ A
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDTN-----------VTGTLNVLQAA 108
Query: 120 RECKVRRLVYNSTADV 135
R+ V ++V+ ST++V
Sbjct: 109 RDLGVEKVVHTSTSEV 124
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 72/367 (19%), Positives = 125/367 (34%), Gaps = 86/367 (23%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-DVRDIS 76
GF G L L L ELG ++ LDP + +L + + D+RD++
Sbjct: 14 GFKGSWLSLWLQELGAKVI-------GYSLDPPTNPNLF-ELANLDNKISSTRGDIRDLN 65
Query: 77 QIKKVLE--GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+++ + VF++ A L + D + V G N++ A RE + V N
Sbjct: 66 ALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSVKAVVNV 125
Query: 132 TADVVFD--------------GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA--- 174
T+D ++ G HD ++ + C +L + F
Sbjct: 126 TSDKCYENKEWGWGYRENDPLGGHDPYSSSK--GC--------AELIISSYRNSFFNPEN 175
Query: 175 NNIDGLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
G+ + R NV G GD ++VP + + G + II + + + +V
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDCIRAFEAG-ERVIIRNPNAIRPWQHVLEPL 234
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEP-----IKFWDFLSIILEGLG-YQRPFIKLPT 285
++ AE L R A A+ N P + + + + G R
Sbjct: 235 SGYLLLAEKLYERGEEYAE-AW---NFGPDDEDAVTVLELVEAMARYWGEDARW------ 284
Query: 286 GVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEE 345
L +H A DC A+ +G+ P +LEE
Sbjct: 285 -----------------DLDGNSHPHEA--------NLLKLDCSKAKTMLGWRPRWNLEE 319
Query: 346 GVSSTIQ 352
+ T+
Sbjct: 320 TLEFTVA 326
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 68 HQVDVRDISQIKKVLEGA------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
++D+ D + +V+ + Y D + + + GA+N+ A E
Sbjct: 32 AELDITDPDAVLEVIRETRPDVVINAAAYTAV-DKAESEPELAFAVNATGAENLARAAAE 90
Query: 122 CKVRRLVYNSTADVVFDGS 140
RLV+ ST D VFDG
Sbjct: 91 VGA-RLVHIST-DYVFDGE 107
|
Length = 281 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+T +V G G +G LV ++L+ G + V D ++ + L + +
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRE---LRSRFPHDKLRFI 59
Query: 69 QVDVRDISQIKKVLE--GASTVFYVDAT---DLNTDDFYNCYMIIVQGAKNVVTACRECK 123
DVRD ++++ + G VF+ A D+ V G KNV+ A E
Sbjct: 60 IGDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENG 119
Query: 124 VRRLVYNST 132
V + V ST
Sbjct: 120 VEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 16/170 (9%)
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
Q DV D+ +K+ LEG V + A D +G +N+V+A + V+RL+
Sbjct: 47 QGDVLDLEDVKEALEGQDAV--ISALGTRNDLSPTTLH--SEGTRNIVSAMKAAGVKRLI 102
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-KAQAEAL-VLFANNIDGLLTCALR 186
A GS D + F + + + A L VL + +D A+R
Sbjct: 103 VVGGA-----GSLDDRPKVTLVLDTLLFPPALRRVAEDHARMLKVLRESGLDWT---AVR 154
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
P +F G T + L I S +++ F E HV
Sbjct: 155 PPALFDGGATGGYYRVELLVDAKGGSRI--SRADLAIFMLDELETPEHVR 202
|
Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 221
KA AE LV+ GL R +NV+GP +L+P + LA G I G G N+
Sbjct: 163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNV 222
Query: 222 SDFTYVENVAHA 233
+ Y E+VA A
Sbjct: 223 RSYLYCEDVAEA 234
|
Length = 668 |
| >gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEY 67
T V GF+G LV+RLLE G VR T D ++ LL ++ R
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVKKVKH-----LLDLPGATTRLTL 60
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII---VQGAKNVVTACREC 122
+ D+ + G + VF+V AT D + D N +I V G +++ AC +
Sbjct: 61 WKADLAVEGSFDDAIRGCTGVFHV-ATPMDFESKDPEN--EVIKPTVNGMLSIMKACAKA 117
Query: 123 K-VRRLVYNSTADVV 136
K VRR+V+ S+A V
Sbjct: 118 KTVRRIVFTSSAGTV 132
|
Length = 351 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 56/212 (26%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V G+ G S+V L+ G + +VR + S L SL + E
Sbjct: 2 LVFGATGYQGGSVVRASLKAGHPVRALVR-------------DPKSELAKSLKAAGVELV 48
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ D+ D + + L+G VF V + I G K + A +E V+ +
Sbjct: 49 EGDLDDHESLVEALKGVDVVFSVTG--------FWLSKEIEDG-KKLADAAKEAGVKHFI 99
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE-------------ALVLFAN 175
+ + V D NG E + D KA+ E F
Sbjct: 100 PSEFGNDV-----DRSNGVEPAVPHF-------DSKAEVERYIRALGIPYTFVYAGFFMG 147
Query: 176 NIDGLL--TCALRPS----NVFGPGDTQLVPL 201
N L L P + GPG+ + VPL
Sbjct: 148 NFLSNLAPPGDLAPPRDKVTLLGPGNPKAVPL 179
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R C+ G GF+ + RL G I+ +D ++ + S + E+H
Sbjct: 23 RICITGAG-GFIASHIARRLKAEGHYII-ASDWKKNEHM----SEDMFCH-------EFH 69
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVVTAC 119
VD+R + KV +G VF + A D+ F YN MI + N++ A
Sbjct: 70 LVDLRVMENCLKVTKGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMI----SFNMLEAA 124
Query: 120 RECKVRRLVYNSTA 133
R V+R Y S+A
Sbjct: 125 RINGVKRFFYASSA 138
|
Length = 370 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 54/261 (20%), Positives = 90/261 (34%), Gaps = 74/261 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
RG VG ++V L G N + S ++D+ D
Sbjct: 7 HRGLVGSAIVRVLARRGYE------------------NVVFRTS--------KELDLTDQ 40
Query: 76 SQIKKVLEG---------ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
++ E A+ V + A DF ++I NV+ A V++
Sbjct: 41 EAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLIND---NVIHAAHRFGVKK 97
Query: 127 LV-------YNSTADVVFDGSHDIHNG-----DETLTCCWKFQDLMCD-LKAQAEALVLF 173
LV Y A D S D+ G +E + +C+ + Q
Sbjct: 98 LVFLGSSCIYPDLAPQPIDES-DLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQY------ 150
Query: 174 ANNIDGLLTCALRPSNVFGPGD------TQLVPLLVN---LAK-PGWTKFII-GSGENMS 222
G ++ P+N++GP D + ++P L+ AK G + + GSG
Sbjct: 151 -----GCDYISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRR 205
Query: 223 DFTYVENVAHAHVCAAEALDS 243
+F Y +++A A V E D
Sbjct: 206 EFLYSDDLARAIVFLLENYDE 226
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 27/125 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
V G +G ++V LL +VR + ++ D E Q
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAADG---------------VEVRQ 47
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
D D +++ EG + + + D + +Q KN + A ++ V+ +VY
Sbjct: 48 GDYDDPETLERAFEGVDRLLLI-----SPSDLEDR----IQQHKNFIDAAKQAGVKHIVY 98
Query: 130 NSTAD 134
S +
Sbjct: 99 LSASG 103
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 62/263 (23%)
Query: 111 GAKNVVTACRECKVRRLVYNSTADV------VFDGSHDIHNGDETLTCCWKFQDLMCDLK 164
G N++ CR V+ LVY S++ V + D D ++ L K
Sbjct: 106 GFLNLLELCRHFGVKHLVYASSSSVYGLNTKMPFSEDD--RVDHPIS-------LYAATK 156
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLL-VNLAKPGWTKFIIGSGENMS 222
E + +++ G+ T LR V+GP G + L G + G
Sbjct: 157 KANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPDMALFLFTKAILEGKPIDVFNDGNMSR 216
Query: 223 DFTYVENVAHAHVCA------------AEALDSRMVSVAGMAFFITNLEPIKFWDFLSII 270
DFTY++++ V A AEA D S + I N P+K DF+ +
Sbjct: 217 DFTYIDDIVEGVVRALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEAL 276
Query: 271 LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTF-DCI 329
+ LG K L + Q T+ D
Sbjct: 277 EKALG-------------------KKAKKNYLPM-------------QKGDVPETYADIS 304
Query: 330 AAQKHIGYSPVVSLEEGVSSTIQ 352
Q+ +GY P SLEEGV ++
Sbjct: 305 KLQRLLGYKPKTSLEEGVKRFVE 327
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 586 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| KOG1792 | 230 | consensus Reticulon [Intracellular trafficking, se | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.98 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.98 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.98 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.98 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.97 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.97 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.96 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.96 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 99.95 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.95 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.94 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.93 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.92 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.92 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.91 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.88 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.88 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.88 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.87 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.87 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.85 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.83 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.82 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.82 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.82 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.81 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.81 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.8 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.8 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.79 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.79 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.78 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.77 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.77 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.76 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.76 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.76 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.76 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.75 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.75 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.75 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.74 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.74 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.73 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.71 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.71 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.7 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.7 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.7 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.69 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.69 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.69 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.69 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.68 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.68 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.67 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.67 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.67 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.67 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.66 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.66 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.66 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.65 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.65 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.65 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.64 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.64 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.64 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.63 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.63 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.62 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.62 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.62 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.62 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.62 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.62 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.61 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.61 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.6 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.59 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.59 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.59 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.55 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.54 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.54 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.54 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.54 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.53 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.53 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.53 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.53 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.52 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.52 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.52 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.51 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.51 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.51 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.5 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.5 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.49 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.49 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.49 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.48 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.48 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.48 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.48 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.47 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.47 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.46 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.42 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.42 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.42 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.42 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.4 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.39 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.39 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.39 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.38 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.37 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.37 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.36 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.36 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.36 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.36 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.34 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.34 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.34 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.34 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.27 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.27 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.24 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.23 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.21 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.21 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.18 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.17 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.15 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.15 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.08 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.07 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.06 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.05 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.05 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.99 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 98.98 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 98.95 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.95 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 98.91 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.9 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 98.89 | |
| PLN00106 | 323 | malate dehydrogenase | 98.85 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 98.84 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.54 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.51 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.49 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.45 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.35 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.32 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.27 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.25 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.24 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.14 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.09 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.08 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.04 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.99 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 97.92 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.9 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.8 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 97.65 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.47 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.46 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.44 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.44 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.35 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.29 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.24 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.24 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.2 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.15 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.14 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.06 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.97 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.95 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.93 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.92 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.9 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.85 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.83 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 96.74 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.71 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.69 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.67 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 96.67 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.66 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.63 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.58 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.53 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.41 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.4 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.38 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.38 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.36 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.26 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.26 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.25 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.24 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.22 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.19 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.14 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.14 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.13 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.1 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.08 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.03 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.03 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.01 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.94 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.94 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.91 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.9 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.83 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.79 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.77 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.76 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.75 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.73 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 95.72 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 95.39 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.38 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.34 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.33 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.3 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.3 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.28 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.21 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.17 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.15 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.06 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.05 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.05 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.02 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.87 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.86 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.71 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 94.63 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.62 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.52 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.44 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.37 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.18 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 94.17 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.11 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.01 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 93.96 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.91 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.89 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 93.86 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 93.76 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.73 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.73 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 93.66 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.61 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 93.61 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.49 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 93.45 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.34 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.33 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 93.28 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 93.18 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 93.04 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 92.97 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 92.94 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.89 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 92.84 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 92.77 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.77 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 92.71 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 92.47 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.45 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 92.35 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.31 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 92.25 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.06 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 92.01 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 91.94 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 91.88 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.77 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.76 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 91.76 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 91.67 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 91.56 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 91.55 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 91.49 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.45 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 91.43 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 91.29 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 91.22 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 91.21 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.2 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 91.17 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 90.83 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 90.83 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 90.75 | |
| KOG1496 | 332 | consensus Malate dehydrogenase [Energy production | 90.54 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 90.5 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 90.49 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 90.47 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 90.36 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 90.09 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 90.07 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 89.88 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 89.84 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 89.76 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 89.7 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.65 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.65 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.58 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.57 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.39 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 89.37 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.3 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 89.28 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 89.07 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.97 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 88.69 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 88.54 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 88.53 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.25 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 88.24 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 88.06 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 88.04 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 88.04 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 87.93 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 87.88 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.78 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 87.7 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 87.52 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 87.13 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 87.13 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 87.11 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 86.84 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 86.69 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 86.61 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 86.61 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 86.57 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 86.51 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.39 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.38 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.37 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 86.22 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 86.19 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.18 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 86.06 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.05 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 85.76 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 85.63 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=368.22 Aligned_cols=299 Identities=21% Similarity=0.242 Sum_probs=250.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+||||||+||||+|.+.+|++.| ++|+++|+... ... ..+.....+++++|++|.+.+.++|+ ++|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~-----g~~-----~~v~~~~~~f~~gDi~D~~~L~~vf~~~~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSN-----GHK-----IALLKLQFKFYEGDLLDRALLTAVFEENKID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCC-----CCH-----HHhhhccCceEEeccccHHHHHHHHHhcCCC
Confidence 689999999999999999999999 59999888542 111 11111126899999999999999996 599
Q ss_pred EEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+||.. .+-.+|-.+|+.|+.||.+|+++|+++||++|||.||+.|||. +...|++|+.| ..|.+|||+|
T Consensus 70 aViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~--p~~~PI~E~~~--~~p~NPYG~s 145 (329)
T COG1087 70 AVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE--PTTSPISETSP--LAPINPYGRS 145 (329)
T ss_pred EEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCC--CCCcccCCCCC--CCCCCcchhH
Confidence 999999987 4678899999999999999999999999999999999999965 44478999995 5799999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----------CcHHHHHHHhcCCCc-eEEEc------CCCcccccc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAKPGWT-KFIIG------SGENMSDFT 225 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-----------~~~~~l~~~~~~g~~-~~i~g------~g~~~~~~i 225 (586)
|.+.|++++.+...++++.++||..++.|.... .++|...+.+...++ +.++| ||+..||||
T Consensus 146 Klm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYI 225 (329)
T COG1087 146 KLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYI 225 (329)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeee
Confidence 999999999999989999999999999997432 467777776654443 56776 678899999
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
||.|+|+|++.|++.+..+ -...+||+++|+.+|+.|+++.+.+..|.+.+....|+ +
T Consensus 226 HV~DLA~aH~~Al~~L~~~---g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~R-------------------R 283 (329)
T COG1087 226 HVDDLADAHVLALKYLKEG---GSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPR-------------------R 283 (329)
T ss_pred ehhHHHHHHHHHHHHHHhC---CceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCC-------------------C
Confidence 9999999999999987532 12259999999999999999999999998766544432 2
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCC-ChHHHHHHHHHHHHH
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSH 356 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~~~~~ 356 (586)
.++++ ..+.|++|++++|||+|++ ++++.+++...|.+.
T Consensus 284 ~GDpa------------~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 284 AGDPA------------ILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred CCCCc------------eeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhhh
Confidence 22333 4577999999999999999 999999999999984
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=384.01 Aligned_cols=344 Identities=40% Similarity=0.582 Sum_probs=309.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+.+++||||+||+|+||+++|++++ ..+++++|..+..+..+.+.. -+.+..++++.+|++|..++..+++|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-----~~~~~~v~~~~~D~~~~~~i~~a~~~~ 77 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-----GFRSGRVTVILGDLLDANSISNAFQGA 77 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-----cccCCceeEEecchhhhhhhhhhccCc
Confidence 46799999999999999999999998 568999888764222222211 013568999999999999999999999
Q ss_pred CEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
.|+|||+.. ....+++..+++|+.||.|++++|++.||+++||+||..|++++.. ....+|+.|++..+.++|+.
T Consensus 78 -~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~p~~~~d~Y~~ 155 (361)
T KOG1430|consen 78 -VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP-IINGDESLPYPLKHIDPYGE 155 (361)
T ss_pred -eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee-cccCCCCCCCccccccccch
Confidence 888888765 2355689999999999999999999999999999999999987766 66789999988888899999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
||+.+|+++.+.+...++.+|+|||+.||||++...++.++..+++|..+...++++.+.||++++++|.|+++|.+++.
T Consensus 156 sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~ 235 (361)
T KOG1430|consen 156 SKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALL 235 (361)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHH
Confidence 99999999999997778999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhc
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS 321 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~-~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (586)
...+..+|+.|+|++++++..++++..+.+.+|...+ .+.+|.+++.+++.+.++...++++ ..|.+++.+++...
T Consensus 236 ~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p---~~p~lt~~~v~~~~ 312 (361)
T KOG1430|consen 236 DKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRP---YQPILTRFRVALLG 312 (361)
T ss_pred hcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccC---CCCCcChhheeeec
Confidence 6778999999999999999999999999999999988 7899999999999999999999986 46789999999999
Q ss_pred cceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 322 ~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.+.+||..||+++|||.|.++++|++++++.|+......
T Consensus 313 ~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 313 VTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred cccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999998776544
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=363.75 Aligned_cols=307 Identities=22% Similarity=0.217 Sum_probs=262.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
|++|||||+||||+.++++++++.. ++|+.+|.-- =......+......++..++++|++|.+.+.++++ ++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLT-----YAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~ 75 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT-----YAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQP 75 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccc-----ccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCC
Confidence 6899999999999999999998764 4588877643 22222233344556799999999999999999998 59
Q ss_pred CEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
|+|+|+||-+ .+-.+|..++++|+.||.+|+|++++...+ ||+|+||-.|||+-..+....+|++ +..|.+||+
T Consensus 76 D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~t--p~~PsSPYS 153 (340)
T COG1088 76 DAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETT--PYNPSSPYS 153 (340)
T ss_pred CeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCC--CCCCCCCcc
Confidence 9999999987 467789999999999999999999999864 9999999999987666555788988 559999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.||+.+..++++|.+.+|+++++.|+++-|||.+- .++|.++..+..|++++++|+|.+.|||+||+|-++|+...++
T Consensus 154 ASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 154 ASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999764 6899999999999999999999999999999999999999998
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCC-----ccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-----IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~-----i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (586)
....|++|||+++...+--|+++.|.+.+|+..+. -.+. +.|.
T Consensus 234 ------kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~-----------------------DRpG--- 281 (340)
T COG1088 234 ------KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVE-----------------------DRPG--- 281 (340)
T ss_pred ------cCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEecc-----------------------CCCC---
Confidence 45669999999999999999999999999987662 1111 1110
Q ss_pred HHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 315 YIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 315 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
- ...+..|.+|+.++|||.|++++|+||+++++||.++..
T Consensus 282 -H----D~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~ 321 (340)
T COG1088 282 -H----DRRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEW 321 (340)
T ss_pred -C----ccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchH
Confidence 0 023456999999999999999999999999999998654
|
|
| >KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=360.81 Aligned_cols=190 Identities=29% Similarity=0.396 Sum_probs=181.9
Q ss_pred cccccccchhhhhcCCcccceeeeccccCcchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccccccCC
Q 007866 366 SRDFNEQSKVEKLLGGGKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGF 445 (586)
Q Consensus 366 ~~~~~r~~~~~~~lg~g~~~~~~~w~~~~~s~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (586)
++.+.|+.++|+++|+|+++|+++|||+|+||+||++++++|++|+..+|+++|++|+++++++.++|+|++.. .++++
T Consensus 25 ~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~-~~~~k 103 (230)
T KOG1792|consen 25 SRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAV-TFLNK 103 (230)
T ss_pred ccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999995 67777
Q ss_pred -CCC--CCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHH
Q 007866 446 -NVK--RISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSKLM--LQSFTWSIGLALVFA 520 (586)
Q Consensus 446 -~~~--~~~~~~~~~~e~~~~~~~~~~~~~~n~~~~~~~~l~~~~d~~~~lk~~~~l~~ls~v--~~~~~tl~~~~~~~~ 520 (586)
+.| .+|. ++++|||.+++++++++.++|+.+.++|++++|+|+++|+|++++||++||| ||||+||+|+|++++
T Consensus 104 ~~~~~~~lp~-~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~ 182 (230)
T KOG1792|consen 104 KSEPGAYLPV-EITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLL 182 (230)
T ss_pred CCCccccCCc-eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666 4553 6999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhhHHHhhchHHHHhHHHHHHHHHHHHHHHHHhcCC
Q 007866 521 FTAFFVYEQYEPEIDGLAKFLFNYLKKSKASLIRNVP 557 (586)
Q Consensus 521 ~t~p~~Ye~~~~~id~~~~~~~~~~~~~~~~~~~~~p 557 (586)
||+|++||||||+||++++++.++++++|+++|+|++
T Consensus 183 ~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l 219 (230)
T KOG1792|consen 183 FTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVL 219 (230)
T ss_pred hcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999984
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=380.77 Aligned_cols=318 Identities=18% Similarity=0.164 Sum_probs=245.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+.+|+|||||||||||++|+++|+++| ++|+++|+......................+++++.+|++|.+.+.++++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 456899999999999999999999999 5999977643110000000000000001135789999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|+|||+|+... ...++..++++|+.||.|++++|++.|+++|||+||+++||..+ ..+..|+. +..|.++|+.
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~e~~--~~~p~~~Y~~ 167 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHP--DLPKIEER--IGRPLSPYAV 167 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCC--CCCCCCCC--CCCCCChhhH
Confidence 99999999752 34567889999999999999999999999999999999997543 23445555 3478889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+|..+|.+++.+..++|++++++||+++|||+++ .+++.++..+..|+++.++|+|.+.+||+|++|+|++++.
T Consensus 168 sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~ 247 (348)
T PRK15181 168 TKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLL 247 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHH
Confidence 9999999999988778999999999999999753 3578888888888888889999999999999999999998
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhccccCCCCCCcH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC 314 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i--~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (586)
+++.. .....+++|||++++++|++|+++.+.+.++...... ..+ ...+..+
T Consensus 248 ~~~~~---~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 301 (348)
T PRK15181 248 SATTN---DLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEP-----------------------IYKDFRD 301 (348)
T ss_pred HHhcc---cccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCc-----------------------ccCCCCC
Confidence 77620 1123578999999999999999999999887432100 000 0000000
Q ss_pred HHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 315 YIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 315 ~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
.. .....+|.+|++++|||+|+++++|+++++++|++.+.
T Consensus 302 ~~----~~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 302 GD----VKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred Cc----ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 00 12346799999999999999999999999999998763
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=352.25 Aligned_cols=265 Identities=45% Similarity=0.663 Sum_probs=226.5
Q ss_pred EEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEEE
Q 007866 12 VVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (586)
Q Consensus 12 lVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (586)
|||||+||+|++|+++|+++|+ ++|+++|+.. ...........+..+++.+|++|++++.++++|+|+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~--------~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSP--------PPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccc--------ccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEE
Confidence 6999999999999999999994 5899966543 211111111222344999999999999999999999999
Q ss_pred cccCCCC--CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC--CCCCCCCCcccCCCCCChHHHHHHH
Q 007866 91 VDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQDLMCDLKAQ 166 (586)
Q Consensus 91 ~aa~~~~--~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~--~~~~~~E~~p~~~~p~~~Y~~sK~~ 166 (586)
+|+.... ..+++.++++|+.||+||+++|++++|+||||+||.+|+++... +....+|+.|++..+.++|+.||+.
T Consensus 73 ~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~ 152 (280)
T PF01073_consen 73 TAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKAL 152 (280)
T ss_pred eCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHH
Confidence 9998743 35678899999999999999999999999999999999987322 2334688888888899999999999
Q ss_pred HHHHHHhhcC---CC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHh
Q 007866 167 AEALVLFANN---ID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (586)
Q Consensus 167 ~E~~l~~~~~---~~--gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~ 241 (586)
+|+++++++. +. .+.+++|||+.||||++....+.+.+.++.|......|++....+++|++|+|+|+++|++++
T Consensus 153 AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L 232 (280)
T PF01073_consen 153 AEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQAL 232 (280)
T ss_pred HHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHh
Confidence 9999999876 23 499999999999999999889989999998877788899999999999999999999999988
Q ss_pred hcc--cccCCCcEEEEeCCCCcC-HHHHHHHHHHHcCCCCCC-ccCC
Q 007866 242 DSR--MVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQRPF-IKLP 284 (586)
Q Consensus 242 ~~~--~~~~~g~~~ni~~~~~~t-~~ei~~~i~~~~g~~~~~-i~vp 284 (586)
... .....|+.|+|++++|++ ++||+..+.+.+|.+.+. +++|
T Consensus 233 ~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~~~~lp 279 (280)
T PF01073_consen 233 LEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPKSISLP 279 (280)
T ss_pred ccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCcccCCC
Confidence 766 567899999999999999 999999999999999887 7766
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=354.88 Aligned_cols=318 Identities=15% Similarity=0.183 Sum_probs=240.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC-CHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~-d~~~l~~~l~~~D 86 (586)
||+|||||||||||++|+++|++++.++|+++|+.. .. ........+++++.+|++ +.+.+.++++++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~--------~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQT--------DR--LGDLVNHPRMHFFEGDITINKEWIEYHVKKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcH--------HH--HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999987325999965422 10 111112346899999998 7788888999999
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc-c----CCCCCC
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT-C----CWKFQD 158 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p-~----~~~p~~ 158 (586)
+|||+|+... ...++...+++|+.++.|++++|++.+ +|+||+||+++||.... .+.+|+.+ . ...|.+
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~--~~~~ee~~~~~~~~~~~p~~ 147 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPD--EEFDPEASPLVYGPINKPRW 147 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCC--cCcCccccccccCcCCCccc
Confidence 9999999752 356788899999999999999999998 79999999999975432 24455432 1 125677
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
+|+.+|..+|++++.++.++|++++++||+++|||+.. .+++.++..+..|+++.+.++|++.++|+|++
T Consensus 148 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~ 227 (347)
T PRK11908 148 IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDID 227 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHH
Confidence 99999999999999998778999999999999999742 35677888888888888888899999999999
Q ss_pred HHHHHHHHHHHHhhccccc--CCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 229 NVAHAHVCAAEALDSRMVS--VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~--~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
|+|++++.+++. +. ..|++|||+++ +.+|++|+++.+.+.+|..+.....+.++ +.....
T Consensus 228 D~a~a~~~~~~~-----~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~ 290 (347)
T PRK11908 228 DGIDALMKIIEN-----KDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKV------------KLVETT 290 (347)
T ss_pred HHHHHHHHHHhC-----ccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCccccccccccc------------ccccCC
Confidence 999999999882 22 45789999987 57999999999999998543221100000 000000
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
. .. ....... ....+..|++|++++|||+|+++++++++++++|++++..
T Consensus 291 ~-~~-~~~~~~~--~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 291 S-GA-YYGKGYQ--DVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred c-hh-ccCcCcc--hhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 0 00 0000000 0013446899999999999999999999999999987654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=355.91 Aligned_cols=320 Identities=23% Similarity=0.241 Sum_probs=244.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~ 85 (586)
|++|||||||||||+++++.|+++|+..|.+.|.... ..............+++++.+|++|.+++.+++++ +
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 75 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTY-----AGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQP 75 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcc-----ccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCC
Confidence 4799999999999999999999999644555443210 00000011111123578899999999999999984 8
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHh---------CCCCEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRE---------CKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~---------~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
|+|||+||... ...++..++++|+.|+.+++++|++ .+++++||+||.++||.......+.+|+.|
T Consensus 76 D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~-- 153 (355)
T PRK10217 76 DCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTP-- 153 (355)
T ss_pred CEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCC--
Confidence 99999999762 2346789999999999999999986 357899999999999865443446788764
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (586)
..|.+.|+.||..+|.+++.++++.+++++++||+++|||++. ..++.++..+..++++.++++|++.++|+|++|+|
T Consensus 154 ~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a 233 (355)
T PRK10217 154 YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA 233 (355)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence 4688999999999999999998878999999999999999863 46777777777888778889999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
+++..+++ . ...+++|||++++++|++|+++.+.+.+|...+..+.+... .. ..+.. .. ..+.
T Consensus 234 ~a~~~~~~-----~-~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~--~~----~~~~~-~~----~~~~ 296 (355)
T PRK10217 234 RALYCVAT-----T-GKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAH--YR----DLITF-VA----DRPG 296 (355)
T ss_pred HHHHHHHh-----c-CCCCCeEEeCCCCcccHHHHHHHHHHHhccccccccccccc--cc----cccee-cC----CCCC
Confidence 99999987 2 34578999999999999999999999998643322111100 00 00000 00 0110
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
. .....+|++|++++|||+|+++++|+++++++||+++..
T Consensus 297 ~--------~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 297 H--------DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred C--------CcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 0 013467999999999999999999999999999988744
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=360.60 Aligned_cols=302 Identities=21% Similarity=0.212 Sum_probs=239.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
..|||+|||||||||++|+++|+++| ++|+++|+... .+... ........+++++.+|+.+.. +.++|
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~---~~~~~---~~~~~~~~~~~~~~~Di~~~~-----~~~~D 186 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFT---GRKEN---LVHLFGNPRFELIRHDVVEPI-----LLEVD 186 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCC---ccHhH---hhhhccCCceEEEECcccccc-----ccCCC
Confidence 35899999999999999999999999 59999776431 11111 111112246788999987643 56899
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc---cCCCCCChH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p---~~~~p~~~Y 160 (586)
+|||+|+... ...++...+++|+.||.|++++|+++|+ ++||+||.+|||+.. ..+.+|+.+ .+..|.+.|
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~--~~p~~E~~~~~~~p~~p~s~Y 263 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--EHPQKETYWGNVNPIGERSCY 263 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCC--CCCCCccccccCCCCCCCCch
Confidence 9999999752 3457889999999999999999999986 899999999997532 235666532 245677899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+.+|..+|++++.++++++++++++||+++|||++. .+++.++..+.+++++.++++|++.++|+|++|+++++..
T Consensus 264 g~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~ 343 (436)
T PLN02166 264 DEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVA 343 (436)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHH
Confidence 999999999999998878999999999999999743 4677888888888888889999999999999999999998
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
+++ .+ .+++|||++++++|+.|+++.+++.+|.+......|. .+ ..
T Consensus 344 ~~~-----~~--~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-----------------------~~----~~ 389 (436)
T PLN02166 344 LME-----GE--HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-----------------------TA----DD 389 (436)
T ss_pred HHh-----cC--CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-----------------------CC----CC
Confidence 887 22 2459999999999999999999999987543222110 00 00
Q ss_pred HHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhcc
Q 007866 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (586)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~ 361 (586)
......|++|++++|||+|+++++++++++++||+++..+.
T Consensus 390 ----~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 390 ----PHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred ----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHhcCc
Confidence 02346799999999999999999999999999998876553
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=355.82 Aligned_cols=317 Identities=18% Similarity=0.174 Sum_probs=236.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+|+|||||||||||++|+++|+++|.++|+++|+.... ..+... ........+++++.+|++|.+.+.++++++|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~-~~~l~~---~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDK-IKHLLE---PDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchh-hhhhhc---cccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 468999999999999999999999843599996643210 000000 0000012468999999999999999999999
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc-----------
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----------- 152 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~----------- 152 (586)
+|||+|+... ...++...+..|+.++.|++++|++++ +||||+||.++||.... ...+|+.|.
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~--~~~~e~~p~~~~~~~~~~~e 165 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIG--SFLPKDHPLRQDPAFYVLKE 165 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcC--CCCCcccccccccccccccc
Confidence 9999999752 234566777899999999999999888 89999999999975321 111222110
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-------------CcHHHHHHHhcCCC
Q 007866 153 ---------CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------QLVPLLVNLAKPGW 210 (586)
Q Consensus 153 ---------~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-------------~~~~~l~~~~~~g~ 210 (586)
...|.++|+.+|..+|++++.+++++|++++++||+++|||+.. .+++.++..+.+++
T Consensus 166 ~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 245 (386)
T PLN02427 166 DESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRE 245 (386)
T ss_pred cccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCC
Confidence 11345789999999999999998878999999999999999742 13445566677888
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc-CCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCC--C-----c
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS-VAGMAFFITNL-EPIKFWDFLSIILEGLGYQRP--F-----I 281 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~-~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~--~-----i 281 (586)
++.++++|.+.++|+|++|+|++++.+++ .+. ..|++||++++ +++|+.|+++.+.+.+|.... . +
T Consensus 246 ~~~~~g~g~~~r~~i~V~Dva~ai~~al~-----~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~ 320 (386)
T PLN02427 246 PLKLVDGGQSQRTFVYIKDAIEAVLLMIE-----NPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTV 320 (386)
T ss_pred CeEEECCCCceECcEeHHHHHHHHHHHHh-----CcccccCceEEeCCCCCCccHHHHHHHHHHHhcccccccccccccc
Confidence 88889999999999999999999999988 232 45789999997 699999999999999885211 0 1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 282 KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 282 ~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.+|.. +...+... .......|.+|++++|||+|+++++++|+++++|++.....
T Consensus 321 ~~~~~-----------------------~~~~~~~~--~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 321 DVSSK-----------------------EFYGEGYD--DSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred ccCcc-----------------------cccCcccc--chhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 11100 00000000 00234569999999999999999999999999999886554
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=350.11 Aligned_cols=303 Identities=18% Similarity=0.158 Sum_probs=240.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+|+|||||||||||+++++.|+++|+ +|+++|+.. .. .... .....+++.+|++|.+.+.++++++|
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~~--------~~-~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~D 87 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDWKK--------NE-HMSE--DMFCHEFHLVDLRVMENCLKVTKGVD 87 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEecc--------cc-cccc--ccccceEEECCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999995 999965432 10 0000 01135788999999999999999999
Q ss_pred EEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCC--CCCCCCCcccCCCCCChH
Q 007866 87 TVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD--IHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 87 ~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~--~~~~~E~~p~~~~p~~~Y 160 (586)
+|||+|+... ...++....+.|+.++.|++++|++.++++|||+||+++||..... ..+.+|+.+.+..|.++|
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Y 167 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAY 167 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHH
Confidence 9999998652 1234566788999999999999999999999999999999864321 124566554466889999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhc-CCCceEEEcCCCccccccchhHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~-~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
+.+|..+|++++.++.++|++++++||+++|||+.. ...+.++..+. .+.++.++++|++.++|+|++|++++
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~a 247 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEG 247 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHH
Confidence 999999999999988878999999999999999653 23556666544 35677889999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
++.+++ .+ .+++||+++++++|++|+++.+.+..|.+.+....|.. ...
T Consensus 248 i~~~~~-----~~--~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~-----------------------~~~- 296 (370)
T PLN02695 248 VLRLTK-----SD--FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP-----------------------EGV- 296 (370)
T ss_pred HHHHHh-----cc--CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC-----------------------CCc-
Confidence 998776 22 35799999999999999999999998876543333210 000
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.....|++|++++|||+|+++++++|+++++|++++...
T Consensus 297 --------~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 297 --------RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred --------cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 123469999999999999999999999999999886554
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=357.30 Aligned_cols=301 Identities=21% Similarity=0.211 Sum_probs=237.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
..|||||||||||||++|+++|+++| ++|+++|+... .+... ....+...+++++.+|+.+.. +.++|
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~---~~~~~---~~~~~~~~~~~~i~~D~~~~~-----l~~~D 185 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFT---GRKEN---VMHHFSNPNFELIRHDVVEPI-----LLEVD 185 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCc---cchhh---hhhhccCCceEEEECCccChh-----hcCCC
Confidence 35899999999999999999999999 59999775421 11111 111123356888999997753 46899
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc---cCCCCCChH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLM 160 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p---~~~~p~~~Y 160 (586)
+|||+|+... ...++...+++|+.|+.|++++|++.|+ ||||+||+.+||... ..+.+|+.+ .+..+.+.|
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~--~~p~~E~~~~~~~P~~~~s~Y 262 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--QHPQVETYWGNVNPIGVRSCY 262 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCC--CCCCCccccccCCCCCccchH
Confidence 9999999752 3457889999999999999999999996 899999999997532 234566542 234567899
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC----CCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~----~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+.+|..+|+++..++++++++++++||+++|||+. ..+++.++..+..++++.++++|++.++|+|++|+|++++.
T Consensus 263 ~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~ 342 (442)
T PLN02206 263 DEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMR 342 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHH
Confidence 99999999999999877899999999999999973 34677788888888888899999999999999999999999
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
+++ . . .++.|||++++++|+.|+++.+++.+|.+......|.. . ..
T Consensus 343 a~e-----~-~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~-------------------~-~~------- 388 (442)
T PLN02206 343 LME-----G-E-HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT-------------------E-DD------- 388 (442)
T ss_pred HHh-----c-C-CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC-------------------C-CC-------
Confidence 887 2 2 34599999999999999999999999865432222210 0 00
Q ss_pred HHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.....+|++|++++|||+|+++++|+|+++++|+++....
T Consensus 389 ----~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~~~~ 428 (442)
T PLN02206 389 ----PHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQRVFG 428 (442)
T ss_pred ----ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 0134579999999999999999999999999999876543
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=352.99 Aligned_cols=314 Identities=15% Similarity=0.140 Sum_probs=236.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC----CCCC------C------CCCCCCeEEEE
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLP------D------SLSSGRAEYHQ 69 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~----~~~~------~------~l~~~~~~~~~ 69 (586)
.++|+||||||+||||++|+++|+++| ++|+++|+... +.... .... . .....+++++.
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~ 119 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCR----RLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYV 119 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEecccc----ccccccccccccccccchHHHHHHHHHhhCCcceEEE
Confidence 357899999999999999999999999 59999875321 11000 0000 0 00123588999
Q ss_pred ccCCCHHHHHHHhc--CCCEEEEcccCCC---CC---CChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCC
Q 007866 70 VDVRDISQIKKVLE--GASTVFYVDATDL---NT---DDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGS 140 (586)
Q Consensus 70 ~Dl~d~~~l~~~l~--~~D~Vih~aa~~~---~~---~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~ 140 (586)
+|++|.+.+.++++ ++|+|||+|+... .. .++...+++|+.|+.|++++|++.|++ +|||+||.++||...
T Consensus 120 ~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~ 199 (442)
T PLN02572 120 GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN 199 (442)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC
Confidence 99999999999997 4899999997642 11 223566789999999999999999986 999999999998532
Q ss_pred CC--CCCCC------CCc-ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC---------------
Q 007866 141 HD--IHNGD------ETL-TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--------------- 196 (586)
Q Consensus 141 ~~--~~~~~------E~~-p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--------------- 196 (586)
.. ..+.+ |+. +.+..|.++|+.||..+|.+++.+++++|++++++||+++|||++.
T Consensus 200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~ 279 (442)
T PLN02572 200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD 279 (442)
T ss_pred CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence 11 00111 222 2356788999999999999999999888999999999999999753
Q ss_pred ----CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCC--cEEEEeCCCCcCHHHHHHHH
Q 007866 197 ----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSII 270 (586)
Q Consensus 197 ----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g--~~~ni~~~~~~t~~ei~~~i 270 (586)
..++.++..+..|+++.++|+|++.|||+||+|+|++++.+++. +...| ++||+++ +++|+.|+++.+
T Consensus 280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~-----~~~~g~~~i~Nigs-~~~si~el~~~i 353 (442)
T PLN02572 280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIAN-----PAKPGEFRVFNQFT-EQFSVNELAKLV 353 (442)
T ss_pred cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhC-----hhhcCceeEEEeCC-CceeHHHHHHHH
Confidence 23556677777888888899999999999999999999999872 22233 5899976 689999999999
Q ss_pred HHH---cCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCC---ChH
Q 007866 271 LEG---LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV---SLE 344 (586)
Q Consensus 271 ~~~---~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~---~le 344 (586)
.+. +|.+.+....|.. ... ........|.+|+++ |||+|++ +++
T Consensus 354 ~~~~~~~g~~~~~~~~p~~-------------------------~~~----~~~~~~~~d~~k~~~-LGw~p~~~~~~l~ 403 (442)
T PLN02572 354 TKAGEKLGLDVEVISVPNP-------------------------RVE----AEEHYYNAKHTKLCE-LGLEPHLLSDSLL 403 (442)
T ss_pred HHHHHhhCCCCCeeeCCCC-------------------------ccc----ccccccCccHHHHHH-cCCCCCCcHHHHH
Confidence 998 7765433222210 000 001133568999985 9999998 899
Q ss_pred HHHHHHHHHHHHhhhc
Q 007866 345 EGVSSTIQSFSHLARD 360 (586)
Q Consensus 345 e~i~~~i~~~~~~~~~ 360 (586)
+++.++++||+++...
T Consensus 404 ~~l~~~~~~~~~~~~~ 419 (442)
T PLN02572 404 DSLLNFAVKYKDRVDT 419 (442)
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999999999865443
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=372.70 Aligned_cols=322 Identities=17% Similarity=0.173 Sum_probs=245.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHH-HHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~-l~~~l~ 83 (586)
..+|+|||||||||||++|+++|+++ | ++|+++|+.. .. ........+++++.+|++|.+. +.++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~--------~~--~~~~~~~~~~~~~~gDl~d~~~~l~~~l~ 381 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGS--------DA--ISRFLGHPRFHFVEGDISIHSEWIEYHIK 381 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCc--------hh--hhhhcCCCceEEEeccccCcHHHHHHHhc
Confidence 35789999999999999999999986 6 5999965532 11 0111123468999999998655 577889
Q ss_pred CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc----C-CC
Q 007866 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC----C-WK 155 (586)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~----~-~~ 155 (586)
++|+|||+||... ...++...+++|+.++.+++++|++++ +||||+||.++||... ..+.+|+.+. + ..
T Consensus 382 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~--~~~~~E~~~~~~~~p~~~ 458 (660)
T PRK08125 382 KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCT--DKYFDEDTSNLIVGPINK 458 (660)
T ss_pred CCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCC--CCCcCccccccccCCCCC
Confidence 9999999999763 355678899999999999999999998 8999999999997532 2357777642 2 24
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
|.+.|+.||..+|++++.+++++|++++++||+++|||++. ..++.++..+..++++.++++|++.++|+
T Consensus 459 p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i 538 (660)
T PRK08125 459 QRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFT 538 (660)
T ss_pred CccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeecee
Confidence 56789999999999999998878999999999999999752 35778888888888888889999999999
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC-CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~-~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
|++|+|++++.+++.. .....|++||+++++ .+|++|+++.+.+.+|.+...+.+|....... .+... ..+
T Consensus 539 ~v~Dva~a~~~~l~~~---~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~- 610 (660)
T PRK08125 539 DIRDGIEALFRIIENK---DNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRV---VESSS-YYG- 610 (660)
T ss_pred eHHHHHHHHHHHHhcc---ccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccc---ccccc-ccc-
Confidence 9999999999998831 012357899999985 79999999999999986543333332210000 00000 000
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
. . .. . .....+|.+|++++|||+|+++++|+++++++|++++.+-
T Consensus 611 -----~-~-~~--~--~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 611 -----K-G-YQ--D--VEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred -----c-c-cc--c--ccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 0 0 00 0 0133569999999999999999999999999999876543
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=315.78 Aligned_cols=304 Identities=21% Similarity=0.225 Sum_probs=254.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+||||.||||+||++.|..+|| .|.++|... ..|.. .+......++++.+.-|+..+ ++.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh-~VIa~Dn~f---tg~k~---n~~~~~~~~~fel~~hdv~~p-----l~~ev 92 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH-EVIALDNYF---TGRKE---NLEHWIGHPNFELIRHDVVEP-----LLKEV 92 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC-eEEEEeccc---ccchh---hcchhccCcceeEEEeechhH-----HHHHh
Confidence 3568999999999999999999999996 999988875 23322 344555667888888888755 67889
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc---CCCCCCh
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---CWKFQDL 159 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~---~~~p~~~ 159 (586)
|.|||+|+..+ ...+|..++..|+.||.|++-.|++.| +||+++||+.|||+ +..+|..|+.|. +..|.+.
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgd--p~~hpq~e~ywg~vnpigpr~c 169 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGD--PLVHPQVETYWGNVNPIGPRSC 169 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCC--cccCCCccccccccCcCCchhh
Confidence 99999999873 466899999999999999999999998 79999999999975 555666665543 6788899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC----CCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD----TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~----~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (586)
|...|..+|.++..|+++.|+.+.|.|+.+.|||+. ..++..|+.++.+++++.++|+|.+.|+|.|++|++++++
T Consensus 170 ydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll 249 (350)
T KOG1429|consen 170 YDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLL 249 (350)
T ss_pred hhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHH
Confidence 999999999999999999999999999999999963 3578889999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
++++ ++. .+.+||++++.+|+.|+|+++.+..+-...+...+. +.+.|
T Consensus 250 ~Lm~-----s~~--~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~--------------------~~Ddp----- 297 (350)
T KOG1429|consen 250 RLME-----SDY--RGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN--------------------GPDDP----- 297 (350)
T ss_pred HHhc-----CCC--cCCcccCCccceeHHHHHHHHHHHcCCCcceeecCC--------------------CCCCc-----
Confidence 9998 222 235899999999999999999999965444333211 11222
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhccc
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~~ 362 (586)
+.+..|.+++++.|||.|+++++||++.++.|+++......
T Consensus 298 ------~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~~~ 338 (350)
T KOG1429|consen 298 ------RKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIAREK 338 (350)
T ss_pred ------cccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999998766543
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=343.49 Aligned_cols=314 Identities=22% Similarity=0.226 Sum_probs=241.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+|||||||||||++++++|+++|+..|+++|.... .+... .........+++++.+|++|.+++.++++ ++|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 75 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTY---AGNLE--SLADVSDSERYVFEHADICDRAELDRIFAQHQPD 75 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCc---cchHH--HHHhcccCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999655776543210 00000 01111112357889999999999999996 489
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC---------CCCEEEEecCccccccCCCC--------CCCC
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYNSTADVVFDGSHD--------IHNG 146 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~---------gvkr~I~~SS~~vyg~~~~~--------~~~~ 146 (586)
+|||+|+... ...+++.++++|+.|+.+++++|++. +++++||+||.++||....+ ..+.
T Consensus 76 ~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (352)
T PRK10084 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLF 155 (352)
T ss_pred EEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCc
Confidence 9999999752 24457889999999999999999874 56799999999999753211 1235
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+|+. +..|.+.|+.||..+|.+++.+++++|++.+++|++++|||++. .+++.++..+..+..+.++++|++.++|
T Consensus 156 ~E~~--~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 156 TETT--AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred cccC--CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 6766 45788999999999999999998878999999999999999853 5677777777778777888999999999
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
+|++|+|+++..+++ ....+++||+++++++++.|+++.+++.+|...+. ..|.. ..+....+
T Consensus 234 v~v~D~a~a~~~~l~------~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~-~~~~~---------~~~~~~~~- 296 (352)
T PRK10084 234 LYVEDHARALYKVVT------EGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPK-ATSYR---------EQITYVAD- 296 (352)
T ss_pred EEHHHHHHHHHHHHh------cCCCCceEEeCCCCcCcHHHHHHHHHHHhcccccc-ccchh---------hhcccccc-
Confidence 999999999998887 23457899999999999999999999999864321 11110 00000000
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
.+. ....+.+|++|++++|||+|+++++++|+++++|++++.
T Consensus 297 ----~~~--------~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 297 ----RPG--------HDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred ----CCC--------CCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 110 012456899999999999999999999999999998864
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=340.91 Aligned_cols=317 Identities=15% Similarity=0.106 Sum_probs=233.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCeEEEEccCCCHHHHHHHhcC-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVLEG- 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l~~~~~~~~~~Dl~d~~~l~~~l~~- 84 (586)
|+||||||+||||++++++|+++| ++|+++|+.... .... ....... .....+++++.+|++|.+++.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSS-FNTQ-RIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcc-cchh-hhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC
Confidence 589999999999999999999999 499996654310 0000 0000000 00123588999999999999999985
Q ss_pred -CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCC---EEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 85 -ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR---RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 85 -~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvk---r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+|+|||+|+... ...++....++|+.|+.+++++|+++|++ +|||+||+++||... ..+.+|+.| ..|.
T Consensus 78 ~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~--~~p~ 153 (343)
T TIGR01472 78 KPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQ--EIPQNETTP--FYPR 153 (343)
T ss_pred CCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCC--CCCCCCCCC--CCCC
Confidence 699999999752 23456778899999999999999998864 899999999997533 235777774 4788
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCC-ceEEEcCCCccccccchhHHH
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-----~~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva 231 (586)
++|+.||..+|.+++.+++++|++.++.|+.++|||+... .+..++..+..|+ ...++|+|++.+||+|++|+|
T Consensus 154 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a 233 (343)
T TIGR01472 154 SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYV 233 (343)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHH
Confidence 9999999999999999988789999999999999996431 2344555555665 345669999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCcc-------CCHHHHHHHHHHHHHHHHHhcc
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-------LPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~-------vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
++++.+++. + .++.|||++++++|+.|+++.+.+.+|.+..... .|.+... ... ..+
T Consensus 234 ~a~~~~~~~-----~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~- 297 (343)
T TIGR01472 234 EAMWLMLQQ-----D--KPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGK-------VHV-EID- 297 (343)
T ss_pred HHHHHHHhc-----C--CCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCc-------eeE-EeC-
Confidence 999999872 2 2358999999999999999999999986532100 0000000 000 000
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
..+..+... .....|++|++++|||+|+++++|+|+++++++++
T Consensus 298 ----~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 298 ----PRYFRPTEV----DLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred ----ccccCCCcc----chhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 000011111 12356999999999999999999999999999985
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=314.67 Aligned_cols=312 Identities=22% Similarity=0.261 Sum_probs=254.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
.++++||||+||||++.+..+..+- .++.+.+|-.. ...+ ...+......++..++.+|+.|...+...+. .
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~---~~s~--~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~ 80 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLD---YCSN--LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEE 80 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecc---cccc--cchhhhhccCCCceEeeccccchHHHHhhhccCc
Confidence 4899999999999999999999873 34566655433 1222 2233444456789999999999998888885 4
Q ss_pred CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
.|.|+|+|+.. .+-.++-.....|+.+|..|+|+++.. ++++|||+||..|||+...+..+. |.. ...|.++|
T Consensus 81 id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~-E~s--~~nPtnpy 157 (331)
T KOG0747|consen 81 IDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVG-EAS--LLNPTNPY 157 (331)
T ss_pred hhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccc-ccc--cCCCCCch
Confidence 89999999987 345677889999999999999999999 599999999999999776544322 555 56999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
+.||+++|..+++|..++|++++++|-++||||++. .++|.|+..+..+++..+.|+|.+.|+|+|++|+++|+-.++
T Consensus 158 AasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~ 237 (331)
T KOG0747|consen 158 AASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVL 237 (331)
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876 589999998888999999999999999999999999999998
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHH
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (586)
+ ....|++|||+++.+++..|+++.+.+.+++..+.+..+++.- .-+..+.
T Consensus 238 ~------Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~--------------------~v~dRp~--- 288 (331)
T KOG0747|consen 238 E------KGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIF--------------------FVEDRPY--- 288 (331)
T ss_pred h------cCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcce--------------------ecCCCCc---
Confidence 8 3567999999999999999999999988877544433322210 0001111
Q ss_pred HhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
-...+..|.+|++ .|||+|++++++|++.+++||.++.
T Consensus 289 -nd~Ry~~~~eKik-~LGw~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 289 -NDLRYFLDDEKIK-KLGWRPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred -ccccccccHHHHH-hcCCcccCcHHHHHHHHHHHHHhhh
Confidence 1123567999999 6999999999999999999998865
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=328.44 Aligned_cols=321 Identities=23% Similarity=0.267 Sum_probs=256.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|+||||+||||+++++.|+++| ++|+++++. +... ..+...+++++.+|+.|.+++.++++++|+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~---~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~v 68 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRP--------TSDR---RNLEGLDVEIVEGDLRDPASLRKAVAGCRAL 68 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEec--------Cccc---cccccCCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999999999999999999999 599995543 2211 1112336889999999999999999999999
Q ss_pred EEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCC-CCCChHHHHHHH
Q 007866 89 FYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCW-KFQDLMCDLKAQ 166 (586)
Q Consensus 89 ih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~-~p~~~Y~~sK~~ 166 (586)
||+|+... ...++...+++|+.++.++++++++.+++++|++||.++||.... ..+.+|+.+... .+.+.|+.+|..
T Consensus 69 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~~~~~~~~~~~Y~~sK~~ 147 (328)
T TIGR03466 69 FHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGD-GTPADETTPSSLDDMIGHYKRSKFL 147 (328)
T ss_pred EEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCC-CCCcCccCCCCcccccChHHHHHHH
Confidence 99998652 345678899999999999999999999999999999999975322 235677764322 235689999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcc
Q 007866 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 167 ~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
+|++++.++.++|++++++||+++||++.... ...++.....+...... +...+|+|++|+|++++.+++.
T Consensus 148 ~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~---- 220 (328)
T TIGR03466 148 AEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYV---DTGLNLVHVDDVAEGHLLALER---- 220 (328)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceee---CCCcceEEHHHHHHHHHHHHhC----
Confidence 99999999887899999999999999986522 22233333333322222 2346899999999999999882
Q ss_pred cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccce
Q 007866 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (586)
Q Consensus 245 ~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (586)
...|+.|+++ ++++++.|+++.+.+.+|.+.+...+|.+.+.+++.+.+++....+ ..|..+....+....+.
T Consensus 221 --~~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 293 (328)
T TIGR03466 221 --GRIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTG----KEPRVTVDGVRMAKKKM 293 (328)
T ss_pred --CCCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHhccC
Confidence 3457788885 5889999999999999999888889999999999988888877666 34455666666667788
Q ss_pred eechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 325 ~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.+|++|+++.|||+|+ +++++++++++||+++
T Consensus 294 ~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 294 FFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 8999999999999996 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=336.43 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=237.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-----CCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----LSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-----l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.++|+||||||+||||++++++|+++| ++|+++++.... . .. ...... ....+++++.+|++|.+++.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~-~--~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 77 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSN-F--NT--QRLDHIYIDPHPNKARMKLHYGDLSDASSLRR 77 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEeccccc-c--cc--cchhhhccccccccCceEEEEecCCCHHHHHH
Confidence 457899999999999999999999999 599996543210 0 00 001000 012358899999999999999
Q ss_pred HhcC--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCC-----EEEEecCccccccCCCCCCCCCCCc
Q 007866 81 VLEG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 81 ~l~~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-----r~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++++ +|+|||+|+... ...++...+++|+.|+.+++++|++++++ +|||+||+++||.... +.+|+.
T Consensus 78 ~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~---~~~E~~ 154 (340)
T PLN02653 78 WLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP---PQSETT 154 (340)
T ss_pred HHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC---CCCCCC
Confidence 8874 799999999752 23567788899999999999999999875 8999999999975432 677877
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCCceE-EEcCCCccccc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGWTKF-IIGSGENMSDF 224 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~~~~-i~g~g~~~~~~ 224 (586)
+..|.++|+.||..+|.+++.++++++++++..|+.++|||+... . +..++..+..|+.+. ..|+|++.++|
T Consensus 155 --~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~ 232 (340)
T PLN02653 155 --PFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDW 232 (340)
T ss_pred --CCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecc
Confidence 457889999999999999999988889999999999999996432 2 334455566776544 45899999999
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~-~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
+|++|+|++++.+++. . .++.||+++++++|++|+++.+.+.+|.+.. .+.+.
T Consensus 233 i~v~D~a~a~~~~~~~-----~--~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------- 286 (340)
T PLN02653 233 GFAGDYVEAMWLMLQQ-----E--KPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEID------------------- 286 (340)
T ss_pred eeHHHHHHHHHHHHhc-----C--CCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeC-------------------
Confidence 9999999999999882 2 2468999999999999999999999986421 11111
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
..+..+... ....+|++|++++|||+|+++++|+|+++++||++...
T Consensus 287 -----~~~~~~~~~----~~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 287 -----PRYFRPAEV----DNLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred -----cccCCcccc----ccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 000111111 13356999999999999999999999999999986543
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=334.24 Aligned_cols=312 Identities=22% Similarity=0.199 Sum_probs=240.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+|+||||||+||||+++++.|+++|+ +|+++++.. ... .....+ ...+++++.+|++|.+.+.+++++
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDP--------PTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCC--------ccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhh
Confidence 468999999999999999999999995 899855432 110 000001 123577899999999999999875
Q ss_pred --CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 85 --ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 85 --~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+|+|||+|+.. ....++...+++|+.++.+++++|++.+ ++++||+||+++||.... ..+.+|+. +..|.+
T Consensus 74 ~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-~~~~~e~~--~~~p~~ 150 (349)
T TIGR02622 74 FKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-VWGYRETD--PLGGHD 150 (349)
T ss_pred cCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-CCCCccCC--CCCCCC
Confidence 69999999965 2345788999999999999999999887 889999999999975422 23567766 346889
Q ss_pred hHHHHHHHHHHHHHhhcCCC-------CceEEEEeCCCcccCCC---CCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 159 LMCDLKAQAEALVLFANNID-------GLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~-------gl~~~ilRp~~v~G~~~---~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
+|+.+|..+|.+++.+++++ |++++++||+++|||++ ..+++.++..+.+|+++. .++|++.++|+|++
T Consensus 151 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~ 229 (349)
T TIGR02622 151 PYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVI-IRNPDATRPWQHVL 229 (349)
T ss_pred cchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeE-ECCCCcccceeeHH
Confidence 99999999999998876532 89999999999999975 256888888888888754 56789999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCC--CCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcccc
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~--~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
|+|++++.+++.+... +...+++|||+++ ++++..|+++.+.+.++.....+..+.
T Consensus 230 D~a~a~~~~~~~~~~~-~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~--------------------- 287 (349)
T TIGR02622 230 EPLSGYLLLAEKLFTG-QAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDS--------------------- 287 (349)
T ss_pred HHHHHHHHHHHHHhhc-CccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeecc---------------------
Confidence 9999999888743211 1233579999974 789999999999987764322111110
Q ss_pred CCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
. +..+.. ......|++|++++|||+|+++++++|+++++|+++...+
T Consensus 288 --~-~~~~~~----~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 288 --D-LNHPHE----ARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred --C-CCCCcc----cceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 0 000000 1235679999999999999999999999999999987554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=360.17 Aligned_cols=310 Identities=22% Similarity=0.271 Sum_probs=243.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh--c
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--E 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l--~ 83 (586)
.+|+|||||||||||++++++|+++| .++|+++|+... ..+. ..+.......+++++.+|+.|.+.+.+++ .
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~--~~~~---~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 79 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY--CSNL---KNLNPSKSSPNFKFVKGDIASADLVNYLLITE 79 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCc--cchh---hhhhhcccCCCeEEEECCCCChHHHHHHHhhc
Confidence 46899999999999999999999984 158998665310 0000 00000112347899999999998888766 5
Q ss_pred CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCC-CCCCCCcccCCCCCC
Q 007866 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDI-HNGDETLTCCWKFQD 158 (586)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~-~~~~E~~p~~~~p~~ 158 (586)
++|+|||+|+... ...++..++++|+.||.+++++|++.| ++||||+||..+||+..... .+.+|+. +..|.+
T Consensus 80 ~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~--~~~p~~ 157 (668)
T PLN02260 80 GIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEAS--QLLPTN 157 (668)
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccC--CCCCCC
Confidence 7999999999863 234567889999999999999999987 89999999999998654321 2235655 346889
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+|+.+|..+|++++.++++++++++++||+++|||++. .+++.++..+.+|+++.++++|++.++|+|++|+|+++..
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 99999999999999988778999999999999999864 4678888888888888899999999999999999999998
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
+++ ....+++||+++++++++.|+++.+++.+|.+.... +.. .. ..| ..
T Consensus 238 ~l~------~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~-i~~----------------~~----~~p-~~--- 286 (668)
T PLN02260 238 VLH------KGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS-IKF----------------VE----NRP-FN--- 286 (668)
T ss_pred HHh------cCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce-eee----------------cC----CCC-CC---
Confidence 887 234568999999999999999999999999754211 100 00 011 11
Q ss_pred HHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
...+..|++|++ +|||+|+++++|+++++++|++++..
T Consensus 287 ----~~~~~~d~~k~~-~lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 287 ----DQRYFLDDQKLK-KLGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred ----cceeecCHHHHH-HcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 123467999997 59999999999999999999998755
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=332.41 Aligned_cols=300 Identities=23% Similarity=0.263 Sum_probs=225.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC---CCCCC-CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LPDSL-SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~---~~~~l-~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.++|+|+||||+||||++++++|+++| ++|++++ |..+... ..... ...+++++.+|++|.+++.++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTV--------RNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe--------CCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 457899999999999999999999999 5999844 3322100 00000 113578899999999999999
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-cccccCCCC-CCCCCCCccc----CCC
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSHD-IHNGDETLTC----CWK 155 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~-~vyg~~~~~-~~~~~E~~p~----~~~ 155 (586)
++++|+|||+|+.. ..++...+++|+.|+.+++++|++++++|+||+||. ++||..... ..+.+|+.|. +..
T Consensus 79 ~~~~d~Vih~A~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 79 IDGCDGVFHTASPV--TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred HhcCCEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 99999999999975 346788999999999999999999999999999996 588643221 1246777532 335
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCceEEEcCCCccccccchhHHH
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (586)
|.++|+.||..+|++++.+++++|++++++||+++|||+... .+..++.. ..|+.. .. ++..++|||++|+|
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~-~~g~~~-~~--~~~~~~~i~V~Dva 232 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKY-LTGSAK-TY--ANLTQAYVDVRDVA 232 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHH-HcCCcc-cC--CCCCcCeeEHHHHH
Confidence 778999999999999999988789999999999999998642 12333333 344432 23 35678999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
++++.+++ .+. .++.||+++ +++++.|+++.+.+.++.. .+|... .. ..++
T Consensus 233 ~a~~~al~-----~~~-~~g~yn~~~-~~~~~~el~~~i~~~~~~~----~~~~~~--------------~~----~~~~ 283 (342)
T PLN02214 233 LAHVLVYE-----APS-ASGRYLLAE-SARHRGEVVEILAKLFPEY----PLPTKC--------------KD----EKNP 283 (342)
T ss_pred HHHHHHHh-----Ccc-cCCcEEEec-CCCCHHHHHHHHHHHCCCC----CCCCCC--------------cc----ccCC
Confidence 99999998 333 445899987 5789999999999998632 122110 00 0000
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
. .....+|++|++ +|||+|+ +++|+|+++++|+++...
T Consensus 284 ~--------~~~~~~d~~k~~-~LG~~p~-~lee~i~~~~~~~~~~~~ 321 (342)
T PLN02214 284 R--------AKPYKFTNQKIK-DLGLEFT-STKQSLYDTVKSLQEKGH 321 (342)
T ss_pred C--------CCccccCcHHHH-HcCCccc-CHHHHHHHHHHHHHHcCC
Confidence 0 123457999998 5999995 999999999999987644
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=324.32 Aligned_cols=305 Identities=23% Similarity=0.242 Sum_probs=241.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--CC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~D 86 (586)
+|+||||||+||++++++|+++| +++|+++|+... .+... .........+++++.+|+.|++++.+++++ +|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 75 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTY---AGNLE--NLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPD 75 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCc---chhhh--hhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCC
Confidence 58999999999999999999987 358888654210 11111 111111224688899999999999999987 99
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
+|||+|+... ...++..++++|+.++.+++++|++.+.+ ++||+||..+||...... +.+|+. +..|.+.|+.
T Consensus 76 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~-~~~e~~--~~~~~~~Y~~ 152 (317)
T TIGR01181 76 AVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGD-AFTETT--PLAPSSPYSA 152 (317)
T ss_pred EEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCC-CcCCCC--CCCCCCchHH
Confidence 9999999752 23467888999999999999999987654 899999999997543322 467766 3477889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~ 240 (586)
+|..+|.+++.++.+.+++++++||+.+|||+.. .+++.++..+..++++.++++|++.++|+|++|+|+++..+++
T Consensus 153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~- 231 (317)
T TIGR01181 153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLE- 231 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHc-
Confidence 9999999999988778999999999999999753 5677788888888877888999999999999999999999887
Q ss_pred hhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHh
Q 007866 241 LDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLA 320 (586)
Q Consensus 241 ~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (586)
+...+++||++++++++++|+++.+.+.+|.+...+... . ..+. .
T Consensus 232 -----~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~------------------~----~~~~---~----- 276 (317)
T TIGR01181 232 -----KGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHV------------------E----DRPG---H----- 276 (317)
T ss_pred -----CCCCCceEEeCCCCceeHHHHHHHHHHHhCCCccccccc------------------C----CCcc---c-----
Confidence 234568999999999999999999999998754322110 0 0010 0
Q ss_pred ccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 321 SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 321 ~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
...+.+|++|++++|||+|+++++++++++++||+++.
T Consensus 277 ~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 277 DRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDNE 314 (317)
T ss_pred hhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcc
Confidence 01235799999999999999999999999999998753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=326.52 Aligned_cols=309 Identities=21% Similarity=0.190 Sum_probs=222.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+..+|+||||||+||||++++++|+++|+ +|+++++... +.............++++++.+|++|.+++.+++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRDPE----NQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAG 80 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECCCC----CHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhc
Confidence 34578999999999999999999999994 8887443321 000000000000113578999999999999999999
Q ss_pred CCEEEEcccCCCC-CCChh-HHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCC--CCCCCCCCcc-------c
Q 007866 85 ASTVFYVDATDLN-TDDFY-NCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH--DIHNGDETLT-------C 152 (586)
Q Consensus 85 ~D~Vih~aa~~~~-~~~~~-~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~--~~~~~~E~~p-------~ 152 (586)
+|+|||+|+.... ..++. .++++|+.|+.++++++.+. +++|+||+||.++||.... ...+.+|+.+ .
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 81 CDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred CCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 9999999997532 23343 56799999999999999887 6899999999999974321 1223455421 1
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHH---HHHHhcCCCceEEEc-CCCc----cccc
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPL---LVNLAKPGWTKFIIG-SGEN----MSDF 224 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~---l~~~~~~g~~~~i~g-~g~~----~~~~ 224 (586)
+..|.++|+.||..+|.+++.+++++|++++++||+++|||+....++. ++..+.+++.+.+.+ ++.+ .++|
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISI 240 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcce
Confidence 2357889999999999999999988899999999999999986432222 233445566555554 3332 3799
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
+|++|+|++++.+++. +. .++.| +++++++++.|+++.+.+..+... +|... +
T Consensus 241 i~V~D~a~a~~~~~~~-----~~-~~~~~-~~~~~~~s~~el~~~i~~~~~~~~----~~~~~---------------~- 293 (338)
T PLN00198 241 THVEDVCRAHIFLAEK-----ES-ASGRY-ICCAANTSVPELAKFLIKRYPQYQ----VPTDF---------------G- 293 (338)
T ss_pred eEHHHHHHHHHHHhhC-----cC-cCCcE-EEecCCCCHHHHHHHHHHHCCCCC----CCccc---------------c-
Confidence 9999999999999872 22 23467 455678999999999998876321 11110 0
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
..+. ......|++|+++ +||+|+++++|+|+++++||+++.
T Consensus 294 ---~~~~---------~~~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 294 ---DFPS---------KAKLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKG 334 (338)
T ss_pred ---ccCC---------CCccccChHHHHh-CCceecCcHHHHHHHHHHHHHHcC
Confidence 0010 0134569999987 699999999999999999998743
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=325.31 Aligned_cols=312 Identities=19% Similarity=0.213 Sum_probs=237.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++|+|||||||||++++++|+++|+ +|+++|+... +... ........ ...+++++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~ 78 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDNLDN----SSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFA 78 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCc----chHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHH
Confidence 468999999999999999999999995 9999664321 0000 00000000 12357899999999999999886
Q ss_pred --CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 84 --GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 84 --~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++++||+||+++||.. ...+.+|+. +..|.+
T Consensus 79 ~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~--~~~~~~E~~--~~~~~~ 154 (352)
T PLN02240 79 STRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQP--EEVPCTEEF--PLSATN 154 (352)
T ss_pred hCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCC--CCCCCCCCC--CCCCCC
Confidence 6899999999752 3456788999999999999999999999999999999999643 234678887 457789
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC------------CcHHHHHHHhcCCC--ceEEEc------C
Q 007866 159 LMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW--TKFIIG------S 217 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~------------~~~~~l~~~~~~g~--~~~i~g------~ 217 (586)
+|+.+|..+|++++.++.. .+++++++|++++||++.. .+++ ++..+..++ .+.++| +
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 233 (352)
T PLN02240 155 PYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMP-YVQQVAVGRRPELTVFGNDYPTKD 233 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHH-HHHHHHhCCCCceEEeCCCCCCCC
Confidence 9999999999999988643 5799999999999997421 1223 334444333 334554 6
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~ 297 (586)
|.+.++|+|++|+|++++.+++.+.. .+...+++||+++++++|++|+++.+++.+|.+.+....|.
T Consensus 234 g~~~~~~i~v~D~a~a~~~a~~~~~~-~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~------------ 300 (352)
T PLN02240 234 GTGVRDYIHVMDLADGHIAALRKLFT-DPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR------------ 300 (352)
T ss_pred CCEEEeeEEHHHHHHHHHHHHhhhhh-ccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC------------
Confidence 89999999999999999998874311 12345689999999999999999999999997655433321
Q ss_pred HHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.+. .. .....|++|++++|||+|+++++|+|+++++|++++...
T Consensus 301 -----------~~~-~~-------~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 301 -----------RPG-DA-------EEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred -----------CCC-Ch-------hhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 110 00 123469999999999999999999999999999997654
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=318.64 Aligned_cols=299 Identities=28% Similarity=0.367 Sum_probs=240.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC-CE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA-ST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~-D~ 87 (586)
|+|||||||||||++|+++|+++|+ +|+++|+.. ...... . .++.++.+|+.|.+...+..+++ |+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~-~V~~~~r~~--------~~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~~~d~ 67 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH-DVRGLDRLR--------DGLDPL---L-SGVEFVVLDLTDRDLVDELAKGVPDA 67 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC-eEEEEeCCC--------cccccc---c-cccceeeecccchHHHHHHHhcCCCE
Confidence 3599999999999999999999995 999955432 211110 1 46889999999998888888888 99
Q ss_pred EEEcccCCCCCC----ChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 88 VFYVDATDLNTD----DFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 88 Vih~aa~~~~~~----~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
|||+|+...... ++..++++|+.|+.|++++|++.+++|+||+||.++|+.. ....+.+|+. .+..|.++|+.|
T Consensus 68 vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~-~~~~~~~E~~-~~~~p~~~Yg~s 145 (314)
T COG0451 68 VIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGD-PPPLPIDEDL-GPPRPLNPYGVS 145 (314)
T ss_pred EEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCC-CCCCCccccc-CCCCCCCHHHHH
Confidence 999999883211 4567999999999999999999999999999998988765 3334678874 356777799999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCc-eEEEcCCCccccccchhHHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-----~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
|..+|+.++.+.+++|++++++||+++|||++.. ....++..+..+.+ +...+++...++++|++|++++++.+
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 225 (314)
T COG0451 146 KLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225 (314)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHH
Confidence 9999999999988788999999999999998764 34445555666765 66777889999999999999999999
Q ss_pred HHHhhcccccCCCcEEEEeCCC-CcCHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~-~~t~~ei~~~i~~~~g~~~~~-i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
++. +. .+ .||+++++ +.+++|+++.+.+.+|.+.+. ...+. .
T Consensus 226 ~~~-----~~-~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-----------------------------~ 269 (314)
T COG0451 226 LEN-----PD-GG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL-----------------------------G 269 (314)
T ss_pred HhC-----CC-Cc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC-----------------------------C
Confidence 982 32 33 99999997 999999999999999987652 11110 0
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
..........+|.+|++++|||+|++++++++.++++|+....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 270 RRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0011223567799999999999999999999999999997753
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=321.06 Aligned_cols=306 Identities=20% Similarity=0.231 Sum_probs=231.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
|+|+||||+||||+++++.|+++|+ +|+++++.. +.... ... ......++.++.+|+.|.+++.++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 73 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVVILDNLC-----NSKRS-VLPVIERLGGKHPTFVEGDIRNEALLTEILHDHA 73 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC-eEEEEecCC-----CchHh-HHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCC
Confidence 5899999999999999999999994 898865421 11110 000 00112356788999999999998886 5
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||+|+... ...++...+++|+.++.+++++|+++|++++|++||.++||... ..+.+|+.| ...|.++|+
T Consensus 74 ~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~--~~~~~E~~~-~~~p~~~Y~ 150 (338)
T PRK10675 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQP--KIPYVESFP-TGTPQSPYG 150 (338)
T ss_pred CCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCC--CCccccccC-CCCCCChhH
Confidence 899999998752 23456788999999999999999999999999999999997432 345788775 236789999
Q ss_pred HHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC------------CcHHHHHHHhcCCC-ceEEEc------CCCcc
Q 007866 162 DLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKPGW-TKFIIG------SGENM 221 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~------------~~~~~l~~~~~~g~-~~~i~g------~g~~~ 221 (586)
.+|..+|++++++++. .+++++++|++++||+... .+++.+.+....+. .+.+++ +|.++
T Consensus 151 ~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 230 (338)
T PRK10675 151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEE
Confidence 9999999999998754 4799999999999997421 12333333333222 234544 67889
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~ 301 (586)
++|+|++|+|++++.+++... ....+++||+++++++|+.|+++.+.+..|.+.+....|..
T Consensus 231 ~~~v~v~D~a~~~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------- 292 (338)
T PRK10675 231 RDYIHVMDLADGHVAAMEKLA---NKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRR--------------- 292 (338)
T ss_pred EeeEEHHHHHHHHHHHHHhhh---ccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCC---------------
Confidence 999999999999999987311 12345799999999999999999999999976543332210
Q ss_pred hccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
+. +. ...++|++|+++++||+|+++++++++++++|++++.
T Consensus 293 --------~~---~~-----~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~~ 333 (338)
T PRK10675 293 --------EG---DL-----PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333 (338)
T ss_pred --------CC---ch-----hhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhhh
Confidence 00 00 1245799999999999999999999999999998864
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=315.74 Aligned_cols=280 Identities=14% Similarity=0.109 Sum_probs=220.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+||||||+||||++++++|+++| +|+++ .|.. ..+.+|++|.+.+.++++ ++|
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~--------~~~~--------------~~~~~Dl~d~~~~~~~~~~~~~D 56 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIAL--------DVHS--------------TDYCGDFSNPEGVAETVRKIRPD 56 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEe--------cccc--------------ccccCCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 37773 3321 124589999999999998 589
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||||+... .+.++...+++|+.++.|++++|++.|+ ++||+||..|||.. ...+.+|++ +..|.++||.|
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~--~~~p~~E~~--~~~P~~~Yg~s 131 (299)
T PRK09987 57 VIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGT--GDIPWQETD--ATAPLNVYGET 131 (299)
T ss_pred EEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCC--CCCCcCCCC--CCCCCCHHHHH
Confidence 9999999873 3457788899999999999999999996 79999999999643 234678877 45889999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC--CCccccccchhHHHHHHHHHHHHh
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS--GENMSDFTYVENVAHAHVCAAEAL 241 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~--g~~~~~~i~v~Dva~ai~~ale~~ 241 (586)
|..+|++++.++. +.+++||+++|||+...+++.+++.+.+++++.+++| |.+.+++.+++|+++++..+++
T Consensus 132 K~~~E~~~~~~~~----~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~-- 205 (299)
T PRK09987 132 KLAGEKALQEHCA----KHLIFRTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALN-- 205 (299)
T ss_pred HHHHHHHHHHhCC----CEEEEecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhc--
Confidence 9999999998754 4699999999999877778888888888888888888 6777777778888988887776
Q ss_pred hcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcC---CCCC---CccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG---YQRP---FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 242 ~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g---~~~~---~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
.+.. +++||+++++++|+.|+++.+.+..+ .+.+ ..++|... ..... ..|
T Consensus 206 ---~~~~-~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~--------------~~~~~-~rp----- 261 (299)
T PRK09987 206 ---KPEV-AGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSA--------------YPTPA-RRP----- 261 (299)
T ss_pred ---cCCC-CCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhh--------------cCCCC-CCC-----
Confidence 2222 35999999999999999999977643 3321 11222110 00000 111
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHH
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~ 354 (586)
.....|++|+++.|||+|. +++|+|+++++.+
T Consensus 262 ------~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 262 ------HNSRLNTEKFQQNFALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred ------CcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHH
Confidence 2446799999999999996 9999999998765
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=319.17 Aligned_cols=287 Identities=19% Similarity=0.192 Sum_probs=211.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HH-HHHHhc---
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQ-IKKVLE--- 83 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~-l~~~l~--- 83 (586)
||||||+||||++|+++|+++|+..|.++|... .... ......+|+.|. +. +.++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~--------~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK--------DGTK--------FVNLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCC--------cchH--------HHhhhhhhhhhhhhHHHHHHHHhcccc
Confidence 799999999999999999999953455533211 1000 011233455543 33 333432
Q ss_pred --CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 84 --GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 84 --~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
++|+|||+||... ...++...++.|+.++.+++++|++.++ ++||+||+++||.... .+.+|+. +..|.++|
T Consensus 66 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~--~~~~E~~--~~~p~~~Y 140 (308)
T PRK11150 66 FGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTD--DFIEERE--YEKPLNVY 140 (308)
T ss_pred cCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCC--CCCccCC--CCCCCCHH
Confidence 6899999998642 2335567899999999999999999998 6999999999975422 2466765 45788999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEE-cCCCccccccchhHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHA 233 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~~~~~g~~~~i~-g~g~~~~~~i~v~Dva~a 233 (586)
+.+|..+|++++.++.+.+++++++||+++|||++.. ....+...+.+|+.+.++ ++++..++|+|++|+|++
T Consensus 141 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a 220 (308)
T PRK11150 141 GYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAV 220 (308)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHH
Confidence 9999999999999987789999999999999998642 233455667777654455 566788999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCC-CCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~-~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
++.+++. . .+++||+++++++|+.|+++.+.+.+|... .....|.. .
T Consensus 221 ~~~~~~~------~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~-------------------------~ 268 (308)
T PRK11150 221 NLWFWEN------G-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDK-------------------------L 268 (308)
T ss_pred HHHHHhc------C-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccc-------------------------c
Confidence 9988872 2 246999999999999999999999998531 11111110 0
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCC-ChHHHHHHHHHHHH
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFS 355 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~~~~ 355 (586)
.. ........|++|+++ +||+|+. +++|+++++++|+.
T Consensus 269 ~~----~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 269 KG----RYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cc----ccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 00 001123569999986 7999974 99999999999975
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=319.88 Aligned_cols=305 Identities=20% Similarity=0.167 Sum_probs=223.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+|+||||||+||||++++++|+++|+ +|++.++... ............-...+++++.+|++|.+++.++++++|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPK---DRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCc---chhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCC
Confidence 468999999999999999999999994 8887433221 000000000000012468889999999999999999999
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCC---CCCCCCCCcccCC----C
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH---DIHNGDETLTCCW----K 155 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~---~~~~~~E~~p~~~----~ 155 (586)
+|||+|+... ...++...+++|+.|+.+++++|.+. +++++|++||.++|+.... ...+.+|+.|..+ .
T Consensus 80 ~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 159 (325)
T PLN02989 80 TVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEE 159 (325)
T ss_pred EEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcc
Confidence 9999999752 23456788999999999999999885 5789999999988764321 2235678765321 2
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~---~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
+.++|+.||..+|.+++.+++++|++++++||+++|||+... +...++..+.+|+.+ .+ .+.++|+|++|+|+
T Consensus 160 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~--~~--~~~r~~i~v~Dva~ 235 (325)
T PLN02989 160 RKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP--FN--TTHHRFVDVRDVAL 235 (325)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC--CC--CcCcCeeEHHHHHH
Confidence 347899999999999999988789999999999999998653 344455555556542 22 35689999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+++.+++ .+. .++.||++ ++++|+.|+++.+.+.+|... ++. ... +.+..
T Consensus 236 a~~~~l~-----~~~-~~~~~ni~-~~~~s~~ei~~~i~~~~~~~~----~~~------------------~~~-~~~~~ 285 (325)
T PLN02989 236 AHVKALE-----TPS-ANGRYIID-GPVVTIKDIENVLREFFPDLC----IAD------------------RNE-DITEL 285 (325)
T ss_pred HHHHHhc-----Ccc-cCceEEEe-cCCCCHHHHHHHHHHHCCCCC----CCC------------------CCC-Ccccc
Confidence 9999988 233 24589995 468999999999999987321 110 000 00000
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
-...+..|++|+++ |||+|+++++|+|+++++|+++.
T Consensus 286 -------~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 286 -------NSVTFNVCLDKVKS-LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred -------cccCcCCCHHHHHH-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00234668999886 99999999999999999999764
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=303.40 Aligned_cols=311 Identities=19% Similarity=0.193 Sum_probs=248.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
.++||||||+||||+|.+-+|+++| |.|.++|+..... .++-...... ....++.++++|++|.+.++++|+ +
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~---~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSY---LESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccc---hhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcC
Confidence 5799999999999999999999999 6999999854321 1110001111 124689999999999999999997 5
Q ss_pred CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|.|+|+|+.. .+..+|..+++.|+.||.||+|++++++++.+||.||+.|||. +...|.+|+.|.. .|.++|+
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~--p~~ip~te~~~t~-~p~~pyg 154 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGL--PTKVPITEEDPTD-QPTNPYG 154 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecC--cceeeccCcCCCC-CCCCcch
Confidence 89999999987 4567789999999999999999999999999999999999964 4457899998754 6999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCccc--CCCC----------CcHHHHHHHh--------cCCCceEEEcCCCcc
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFG--PGDT----------QLVPLLVNLA--------KPGWTKFIIGSGENM 221 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G--~~~~----------~~~~~l~~~~--------~~g~~~~i~g~g~~~ 221 (586)
.+|..+|+++..++..+++..+.||.++++| |..+ ...|...+.+ .-|.. ....||+..
T Consensus 155 ~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d-~~t~dgt~v 233 (343)
T KOG1371|consen 155 KTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRD-YTTIDGTIV 233 (343)
T ss_pred hhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCc-ccccCCCee
Confidence 9999999999999998999999999999999 4221 2233222211 12332 234477999
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~ 301 (586)
++++|+-|.|+.++.|++.+. ....-++||++++...++.|+..++.++.|.+.+...+|+.
T Consensus 234 rdyi~v~Dla~~h~~al~k~~---~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R--------------- 295 (343)
T KOG1371|consen 234 RDYIHVLDLADGHVAALGKLR---GAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRR--------------- 295 (343)
T ss_pred ecceeeEehHHHHHHHhhccc---cchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCC---------------
Confidence 999999999999999998542 22333499999999999999999999999998776544421
Q ss_pred hccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.++.+ ....+.+++.++|||+|.+++++++++++.|..+++.+
T Consensus 296 ----~gdv~------------~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 296 ----NGDVA------------FVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred ----CCCce------------eeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 11221 45679999999999999999999999999999998765
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=323.63 Aligned_cols=302 Identities=22% Similarity=0.229 Sum_probs=217.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC----CCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL----SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l----~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.++||||||+||||++++++|+++| ++|+++++. .+.. ...... ...+++++.+|++|.+.+.+++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~ 75 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG-YTVRATVRD--------PANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAI 75 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcC--------cchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHH
Confidence 5799999999999999999999999 599985443 2110 000000 0125788999999999999999
Q ss_pred cCCCEEEEcccCCCC-CCCh-hHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCccc-------
Q 007866 83 EGASTVFYVDATDLN-TDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTC------- 152 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~-~~~~-~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~------- 152 (586)
+++|+|||+|+.... ..++ ...+++|+.|+.+++++|++++ ++||||+||.++|+.........+|+.+.
T Consensus 76 ~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~ 155 (351)
T PLN02650 76 RGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRR 155 (351)
T ss_pred hCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhc
Confidence 999999999997632 2233 4789999999999999999987 89999999998886432222224565321
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc-HHHHHHHh--cCCCceEEEcCCCccccccchhH
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL-VPLLVNLA--KPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~--~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
+..|.++|+.||..+|.+++.+++++|++++++||+++|||+.... .+.++..+ ..+.. ...+. .+.++|+|++|
T Consensus 156 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~r~~v~V~D 233 (351)
T PLN02650 156 KKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNE-AHYSI-IKQGQFVHLDD 233 (351)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCc-cccCc-CCCcceeeHHH
Confidence 1235568999999999999999888899999999999999976432 22222221 22332 12222 23589999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (586)
+|++++.+++ .+.. ++.| +++++++|+.|+++.+.+.++... +|... . ..
T Consensus 234 va~a~~~~l~-----~~~~-~~~~-i~~~~~~s~~el~~~i~~~~~~~~----~~~~~---------------~----~~ 283 (351)
T PLN02650 234 LCNAHIFLFE-----HPAA-EGRY-ICSSHDATIHDLAKMLREKYPEYN----IPARF---------------P----GI 283 (351)
T ss_pred HHHHHHHHhc-----CcCc-CceE-EecCCCcCHHHHHHHHHHhCcccC----CCCCC---------------C----Cc
Confidence 9999999987 2333 3478 666688999999999999876321 11110 0 00
Q ss_pred CCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+. + .....+|.+|++ +|||+|+++++++|+++++|+++...
T Consensus 284 ~~---~-----~~~~~~d~~k~~-~lG~~p~~~l~egl~~~i~~~~~~~~ 324 (351)
T PLN02650 284 DE---D-----LKSVEFSSKKLT-DLGFTFKYSLEDMFDGAIETCREKGL 324 (351)
T ss_pred Cc---c-----cccccCChHHHH-HhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 00 0 012346888875 69999999999999999999987543
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=317.36 Aligned_cols=283 Identities=18% Similarity=0.220 Sum_probs=221.4
Q ss_pred EEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCCEEE
Q 007866 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GASTVF 89 (586)
Q Consensus 12 lVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D~Vi 89 (586)
||||||||||++|++.|+++|+ +|++ ..+. ..+|+.|.+.+.++++ ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~-~v~~--------~~~~-----------------~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGF-TNLV--------LRTH-----------------KELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCC-cEEE--------eecc-----------------ccCCCCCHHHHHHHHhccCCCEEE
Confidence 6999999999999999999996 5555 1110 1479999999999887 479999
Q ss_pred EcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc--CCCCCC-hHHH
Q 007866 90 YVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQD-LMCD 162 (586)
Q Consensus 90 h~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~--~~~p~~-~Y~~ 162 (586)
|||+... ...++...++.|+.++.+++++|++++++|+||+||..|||... ..+.+|+.+. +..|.+ +|+.
T Consensus 55 h~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~~~~Y~~ 132 (306)
T PLN02725 55 LAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFA--PQPIPETALLTGPPEPTNEWYAI 132 (306)
T ss_pred EeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCC--CCCCCHHHhccCCCCCCcchHHH
Confidence 9999752 23567788999999999999999999999999999999997532 3467886532 234444 5999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHH----HhcCCCceEE-EcCCCccccccchhHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVN----LAKPGWTKFI-IGSGENMSDFTYVENVA 231 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~----~~~~g~~~~i-~g~g~~~~~~i~v~Dva 231 (586)
+|..+|++++.+++..+++++++||+.+|||++. ..++.++. ....+.++.+ +++|++.++|+|++|++
T Consensus 133 sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~ 212 (306)
T PLN02725 133 AKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLA 212 (306)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHH
Confidence 9999999999888778999999999999999753 23444443 3345666555 78899999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
++++.+++. . ..++.||+++++++|+.|+++.+.+.+|.+......+. .+.
T Consensus 213 ~~~~~~~~~-----~-~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-----------------------~~~ 263 (306)
T PLN02725 213 DAVVFLMRR-----Y-SGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTS-----------------------KPD 263 (306)
T ss_pred HHHHHHHhc-----c-ccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecCC-----------------------CCC
Confidence 999998872 2 23467899999999999999999999986543211110 000
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
. .....+|++|++ ++||+|+++++++++++++|++++...
T Consensus 264 ~--------~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~~~~~ 303 (306)
T PLN02725 264 G--------TPRKLMDSSKLR-SLGWDPKFSLKDGLQETYKWYLENYET 303 (306)
T ss_pred c--------ccccccCHHHHH-HhCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 0 012457999997 599999999999999999999987654
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=306.69 Aligned_cols=302 Identities=23% Similarity=0.208 Sum_probs=227.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC---CCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL---PDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~---~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
++++|+||||+||||+++++.|+++| |.|++ ..|++++... ...+ ..++...+.+||.|++++.++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~g--------tVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~a 75 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRG--------TVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKA 75 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEE--------EEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHH
Confidence 67899999999999999999999999 59999 7887764211 1112 234689999999999999999
Q ss_pred hcCCCEEEEcccCCCCCC--ChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccC---CCCCCCCCCCcccCC-
Q 007866 82 LEGASTVFYVDATDLNTD--DFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDG---SHDIHNGDETLTCCW- 154 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~--~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~---~~~~~~~~E~~p~~~- 154 (586)
++|||.|||+|.+..++. +..+..+.+++||.|++++|++.+ |||+||+||+++.... ..+....+|+.|.+.
T Consensus 76 i~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~ 155 (327)
T KOG1502|consen 76 IDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLD 155 (327)
T ss_pred HhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHH
Confidence 999999999999984322 345899999999999999999998 9999999999998643 333456788776422
Q ss_pred ---CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 155 ---KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 155 ---~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~---~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
.-..+|..||..+|+.+++++++.|++.+.+-|+.|+||.....+ ....-...+|..-.. ...+..|+|++
T Consensus 156 ~~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~---~n~~~~~VdVr 232 (327)
T KOG1502|consen 156 FCRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY---PNFWLAFVDVR 232 (327)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC---CCCceeeEeHH
Confidence 123689999999999999999999999999999999999865422 223334445532112 23345599999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
|+|.|++.|+| .+...| .|.+.+ +..++.|+++.+.+.++.-. +|..- + ...
T Consensus 233 DVA~AHv~a~E-----~~~a~G-Ryic~~-~~~~~~ei~~~l~~~~P~~~----ip~~~---------------~--~~~ 284 (327)
T KOG1502|consen 233 DVALAHVLALE-----KPSAKG-RYICVG-EVVSIKEIADILRELFPDYP----IPKKN---------------A--EEH 284 (327)
T ss_pred HHHHHHHHHHc-----CcccCc-eEEEec-CcccHHHHHHHHHHhCCCCC----CCCCC---------------C--ccc
Confidence 99999999999 455554 777766 45669999999999886432 22110 0 000
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
.+. .....++++|++++.|++.. +++|++.++++++++..
T Consensus 285 ~~~---------~~~~~~~~~k~k~lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 285 EGF---------LTSFKVSSEKLKSLGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred ccc---------ccccccccHHHHhcccceec-ChHHHHHHHHHHHHHhc
Confidence 000 01235799999985557776 99999999999998864
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=321.28 Aligned_cols=306 Identities=19% Similarity=0.222 Sum_probs=218.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC--CCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--LPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~--~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
...|+||||||+||||++++++|+++| ++|+++++. ..+.. ........+++++.+|+.|.+++.++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRD--------PAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVK 78 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC--------hHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHc
Confidence 457899999999999999999999999 599984432 21100 0000112468899999999999999999
Q ss_pred CCCEEEEcccCCCC-----CCChhHHH-----HHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCC---CCCCCCC
Q 007866 84 GASTVFYVDATDLN-----TDDFYNCY-----MIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHD---IHNGDET 149 (586)
Q Consensus 84 ~~D~Vih~aa~~~~-----~~~~~~~~-----~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~---~~~~~E~ 149 (586)
++|+|||+|+.... ..++...+ +.|+.|+.+++++|++++ +++|||+||.++||..... ..+.+|+
T Consensus 79 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~ 158 (353)
T PLN02896 79 GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDET 158 (353)
T ss_pred CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcc
Confidence 99999999997621 23454444 445699999999998875 8999999999999743221 1346676
Q ss_pred cccC-------CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhc---CCCce--EEEc-
Q 007866 150 LTCC-------WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTK--FIIG- 216 (586)
Q Consensus 150 ~p~~-------~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~---~g~~~--~i~g- 216 (586)
.+.+ ..|.++|+.||..+|++++.+++++|++++++||+++|||+....++.++..+. .|... ...+
T Consensus 159 ~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 238 (353)
T PLN02896 159 CQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSA 238 (353)
T ss_pred cCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccc
Confidence 3322 235568999999999999999888899999999999999986543443333222 33321 1111
Q ss_pred --CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHH
Q 007866 217 --SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294 (586)
Q Consensus 217 --~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~ 294 (586)
.....++|+|++|+|++++.+++ .+. .+..|++ +++++++.|+++.+.+.++.....+...
T Consensus 239 ~~~~~~~~dfi~v~Dva~a~~~~l~-----~~~-~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~---------- 301 (353)
T PLN02896 239 VNSRMGSIALVHIEDICDAHIFLME-----QTK-AEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLD---------- 301 (353)
T ss_pred cccccCceeEEeHHHHHHHHHHHHh-----CCC-cCccEEe-cCCCCCHHHHHHHHHHhCCCCCcccccc----------
Confidence 11224699999999999999988 222 2347754 5678999999999999887432111110
Q ss_pred HHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
. ..+ ...+...|.+++++ |||+|+++++++|+++++|++++..
T Consensus 302 --------~----~~~---------~~~~~~~~~~~~~~-lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 302 --------E----EKR---------GSIPSEISSKKLRD-LGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred --------c----ccc---------CccccccCHHHHHH-cCCCccCCHHHHHHHHHHHHHHCCC
Confidence 0 000 00122358888875 9999999999999999999998655
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=317.05 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=220.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+|+|||||||||||++++++|+++|+ +|+++++... .......+... -..++++++.+|+.|++.+.++++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPN----DPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGC 77 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCC----chhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCC
Confidence 358999999999999999999999995 9988544321 00000000000 01246889999999999999999999
Q ss_pred CEEEEcccCCC-CCCChh-HHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccc--cccCCC-CCCCCCCCcccCC----C
Q 007866 86 STVFYVDATDL-NTDDFY-NCYMIIVQGAKNVVTACREC-KVRRLVYNSTADV--VFDGSH-DIHNGDETLTCCW----K 155 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~-~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~v--yg~~~~-~~~~~~E~~p~~~----~ 155 (586)
|+|||+|+... ...++. .++++|+.|+.|++++|++. +++|+||+||.++ |+..+. ...+.+|+.+... .
T Consensus 78 d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~ 157 (322)
T PLN02662 78 EGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEE 157 (322)
T ss_pred CEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhc
Confidence 99999999763 233454 78899999999999999988 8999999999874 543221 2235677654211 1
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~---~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
+.++|+.+|..+|++++.+++++|++++++||+++|||+... ....++..+..|+.. . +.+.++|+|++|+|+
T Consensus 158 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~i~v~Dva~ 233 (322)
T PLN02662 158 SKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F--PNASYRWVDVRDVAN 233 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C--CCCCcCeEEHHHHHH
Confidence 236899999999999999988789999999999999997542 333444444445431 2 346799999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+++.+++ .+.. ++.||+++ ++++++|+++.+.+.++.. .+|.+. .+ ..+
T Consensus 234 a~~~~~~-----~~~~-~~~~~~~g-~~~s~~e~~~~i~~~~~~~----~~~~~~--------------~~----~~~-- 282 (322)
T PLN02662 234 AHIQAFE-----IPSA-SGRYCLVE-RVVHYSEVVKILHELYPTL----QLPEKC--------------AD----DKP-- 282 (322)
T ss_pred HHHHHhc-----CcCc-CCcEEEeC-CCCCHHHHHHHHHHHCCCC----CCCCCC--------------CC----ccc--
Confidence 9999988 2333 34789974 7899999999999987642 122110 00 000
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
......+|++|+++ |||+| ++++++++++++||+++.
T Consensus 283 -------~~~~~~~d~~k~~~-lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 283 -------YVPTYQVSKEKAKS-LGIEF-IPLEVSLKDTVESLKEKG 319 (322)
T ss_pred -------cccccccChHHHHH-hCCcc-ccHHHHHHHHHHHHHHcC
Confidence 00134689999985 99998 499999999999998754
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=314.15 Aligned_cols=294 Identities=20% Similarity=0.182 Sum_probs=223.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----CCC
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GAS 86 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~----~~D 86 (586)
|||||||||||+++++.|.++|+++|.++++. .....+.. .....+.+|+.+.+.++.+.+ ++|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~--------~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D 68 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNL--------RDGHKFLN----LADLVIADYIDKEDFLDRLEKGAFGKIE 68 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecC--------CCchhhhh----hhheeeeccCcchhHHHHHHhhccCCCC
Confidence 69999999999999999999995478884432 11111110 112456788888887777654 799
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
+|||+|+.. ....++...+++|+.++.+++++|++.++ +|||+||+++|++... +.+|+.+ +..|.++|+.+|.
T Consensus 69 ~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~---~~~e~~~-~~~p~~~Y~~sK~ 143 (314)
T TIGR02197 69 AIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEA---GFREGRE-LERPLNVYGYSKF 143 (314)
T ss_pred EEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCC---CcccccC-cCCCCCHHHHHHH
Confidence 999999976 33456788999999999999999999987 8999999999975432 3455543 2467889999999
Q ss_pred HHHHHHHhhcC--CCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEE------cCCCccccccchhHHH
Q 007866 166 QAEALVLFANN--IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII------GSGENMSDFTYVENVA 231 (586)
Q Consensus 166 ~~E~~l~~~~~--~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~------g~g~~~~~~i~v~Dva 231 (586)
.+|.+++++.. ..+++++++||+++|||++. .++..++..+..++.+.++ ++|++.++|+|++|++
T Consensus 144 ~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a 223 (314)
T TIGR02197 144 LFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVV 223 (314)
T ss_pred HHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHH
Confidence 99999987532 24679999999999999753 3455667777777766554 4678889999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
+++..+++ . ..+++||+++++++|++|+++.+.+.+|.+.....+|.. ..+
T Consensus 224 ~~i~~~~~-----~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------------~~~- 274 (314)
T TIGR02197 224 DVNLWLLE-----N--GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMP---------------------EAL- 274 (314)
T ss_pred HHHHHHHh-----c--ccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCc---------------------ccc-
Confidence 99999988 2 345699999999999999999999999976432222110 000
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
..........|++|+++.+||+|+++++|+++++++|+.
T Consensus 275 -----~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 275 -----RGKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred -----ccccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 000112345799999999999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=316.17 Aligned_cols=298 Identities=18% Similarity=0.164 Sum_probs=221.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC----CCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS----LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~----l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+++||||||+||||++++++|+++| ++|++ ..|+.... ..... -...+++++.+|++|.+.+.++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKA--------TVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA 74 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEE--------EECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH
Confidence 46899999999999999999999999 48987 34432211 00000 0124688999999999999999
Q ss_pred hcCCCEEEEcccCCCC-CCCh-hHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCC---CCCCCCCCcccCC-
Q 007866 82 LEGASTVFYVDATDLN-TDDF-YNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH---DIHNGDETLTCCW- 154 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~-~~~~-~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~---~~~~~~E~~p~~~- 154 (586)
++++|+|||+|+.... ..++ ...+++|+.|+.+++++|++. +++|+||+||.++|+.+.. .....+|+.+...
T Consensus 75 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~ 154 (322)
T PLN02986 75 IEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPS 154 (322)
T ss_pred HhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChH
Confidence 9999999999997522 2233 457899999999999999986 7999999999987642321 2234677664321
Q ss_pred ---CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC---cHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 155 ---KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ---LVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 155 ---~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~---~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
.+.++|+.||..+|.+++.+.+++|++++++||+++|||+... ....++..+..|+.. + +.+.++|+|++
T Consensus 155 ~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~v~v~ 230 (322)
T PLN02986 155 LCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F--NNRFYRFVDVR 230 (322)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C--CCcCcceeEHH
Confidence 3568899999999999999988889999999999999997542 233445555556542 3 35678999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
|+|++++.+++ .+.. ++.||++ ++++|+.|+++.+.+.++.- .+|..
T Consensus 231 Dva~a~~~al~-----~~~~-~~~yni~-~~~~s~~e~~~~i~~~~~~~----~~~~~---------------------- 277 (322)
T PLN02986 231 DVALAHIKALE-----TPSA-NGRYIID-GPIMSVNDIIDILRELFPDL----CIADT---------------------- 277 (322)
T ss_pred HHHHHHHHHhc-----Cccc-CCcEEEe-cCCCCHHHHHHHHHHHCCCC----CCCCC----------------------
Confidence 99999999998 3333 3489995 46899999999999998731 12110
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.+... . .......|.+|+++ |||+|+ +++|+++++++|+.+.
T Consensus 278 ~~~~~---~--~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 278 NEESE---M--NEMICKVCVEKVKN-LGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred Ccccc---c--cccCCccCHHHHHH-cCCccc-CHHHHHHHHHHHHHHc
Confidence 00000 0 00112478999875 999997 9999999999999874
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=312.70 Aligned_cols=317 Identities=18% Similarity=0.225 Sum_probs=231.3
Q ss_pred CCCCeEEEE----cCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVL----NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVT----GatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.++++|||| |||||||++++++|+++|| +|+++++.... ....+... .....+...+++++.+|+.|. .+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~-~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~---~~ 124 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEP-SQKMKKEPFSRFSELSSAGVKTVWGDPADV---KS 124 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcc-hhhhccCchhhhhHhhhcCceEEEecHHHH---Hh
Confidence 356899999 9999999999999999995 99995544310 00000000 000011223589999999773 34
Q ss_pred Hh--cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 81 VL--EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 81 ~l--~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
++ .++|+|||+++. +..++.+++++|++.|++||||+||.++|+... ..+..|+.+ ..|.+
T Consensus 125 ~~~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~--~~p~~E~~~--~~p~~ 187 (378)
T PLN00016 125 KVAGAGFDVVYDNNGK-------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSD--EPPHVEGDA--VKPKA 187 (378)
T ss_pred hhccCCccEEEeCCCC-------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCC--CCCCCCCCc--CCCcc
Confidence 44 479999999753 145788999999999999999999999997533 234556543 23332
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
+|..+|.+++. .+++++++||+++|||+... ....++..+..++++.++++|.+.++|+|++|+|++++.+
T Consensus 188 ----sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~ 259 (378)
T PLN00016 188 ----GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALV 259 (378)
T ss_pred ----hHHHHHHHHHH----cCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHH
Confidence 89999999875 58999999999999997653 4566777788888888889999999999999999999999
Q ss_pred HHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (586)
++ .+...+++||+++++++|+.|+++.+.+.+|.+...+..+.... + .+... ..| ..
T Consensus 260 l~-----~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~-------~-----~~~~~-~~p-~~---- 316 (378)
T PLN00016 260 VG-----NPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAV-------G-----FGAKK-AFP-FR---- 316 (378)
T ss_pred hc-----CccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCcccc-------C-----ccccc-ccc-cc----
Confidence 88 34556789999999999999999999999998764433332110 0 00000 000 00
Q ss_pred HHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccchhhhhcCC
Q 007866 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSSLAYSRDFNEQSKVEKLLGG 381 (586)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~~~~~~~~~~r~~~~~~~lg~ 381 (586)
...+..|++|++++|||+|+++++|+|+++++||+.+....++ -+|.-++++-+-+|.
T Consensus 317 ---~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 374 (378)
T PLN00016 317 ---DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFGRGRDRKE---ADFETDDKILEKLGV 374 (378)
T ss_pred ---ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCccc---cCccccHHHHHHhcC
Confidence 1233469999999999999999999999999999987766443 367777777666644
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=301.57 Aligned_cols=302 Identities=14% Similarity=0.135 Sum_probs=228.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|+|||||||+|++++++|+++|+ +|++ +.|+.++. ..+...+++++.+|++|++++.++++|+|+|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~--------l~R~~~~~---~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~V 68 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-QVRC--------LVRNLRKA---SFLKEWGAELVYGDLSLPETLPPSFKGVTAI 68 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEE--------EEcChHHh---hhHhhcCCEEEECCCCCHHHHHHHHCCCCEE
Confidence 5899999999999999999999995 9999 55543321 1112347899999999999999999999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
||+++.. ..++..++++|+.++.|++++|+++|++||||+||.++.. .+.++|..+|..+|
T Consensus 69 i~~~~~~--~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-----------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 69 IDASTSR--PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-----------------YPYIPLMKLKSDIE 129 (317)
T ss_pred EECCCCC--CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-----------------cCCChHHHHHHHHH
Confidence 9998653 3345668889999999999999999999999999964320 12356899999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccC
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
++++. .|++++++||+.+|+.. +..+......++++.+ +++.+.++|+|++|+|+++..+++ .+..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~-----~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL----ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLS-----LPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh----hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhc-----Cccc
Confidence 99876 58999999999988642 2111222223444444 445677899999999999999887 3556
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeech
Q 007866 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (586)
Q Consensus 249 ~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 328 (586)
.|++||+++++++|+.|+++.+.+.+|.+.....+|.+.....+.+...+..... ....+....+..+..+..++.
T Consensus 196 ~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 271 (317)
T CHL00194 196 KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWN----ISDRLAFVEILNTSNNFSSSM 271 (317)
T ss_pred cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchh----hHHHHHHHHHHhcCCCcCCCH
Confidence 7899999999999999999999999999888889999988777666554321000 011111122222334455678
Q ss_pred hhHhhccCCCCC--CChHHHHHHHHHHHHHhhh
Q 007866 329 IAAQKHIGYSPV--VSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 329 ~ka~~~LG~~p~--~~lee~i~~~i~~~~~~~~ 359 (586)
++++++||+.|+ .++++++++.++....+..
T Consensus 272 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (317)
T CHL00194 272 AELYKIFKIDPNELISLEDYFQEYFERILKRLK 304 (317)
T ss_pred HHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 899999999984 4899999988877665443
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=296.01 Aligned_cols=279 Identities=19% Similarity=0.214 Sum_probs=218.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC--CE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--ST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~--D~ 87 (586)
+|||||||||||++++++|+++| ++|++ +.|. .+|+.|.+++.+++++. |+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~--------~~r~------------------~~d~~~~~~~~~~~~~~~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVA--------LTSS------------------QLDLTDPEALERLLRAIRPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEE--------eCCc------------------ccCCCCHHHHHHHHHhCCCCE
Confidence 58999999999999999999999 49998 4442 47999999999999865 99
Q ss_pred EEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|||+|+... ...++...+++|+.++.+++++|++.++ |+|++||.++|+.. ...+.+|+++ ..|.++|+.+|
T Consensus 54 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~--~~~~~~E~~~--~~~~~~Y~~~K 128 (287)
T TIGR01214 54 VVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGE--GKRPYREDDA--TNPLNVYGQSK 128 (287)
T ss_pred EEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCC--CCCCCCCCCC--CCCcchhhHHH
Confidence 999999753 2345778899999999999999999886 89999999999642 2346778774 47788999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCC-CCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~-~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
..+|++++.+ +++++++||+.+||++. +.++..++..+..+.++.+.++ ++++++|++|+|+++..+++
T Consensus 129 ~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~---- 198 (287)
T TIGR01214 129 LAGEQAIRAA----GPNALIVRTSWLYGGGGGRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQ---- 198 (287)
T ss_pred HHHHHHHHHh----CCCeEEEEeeecccCCCCCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHh----
Confidence 9999999885 67899999999999986 3556667777777776666654 67899999999999999988
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
.+...+++||+++++++|+.|+++.+.+.+|.+...+..|... .. .. .... .+.. ....
T Consensus 199 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~--~~---~~---~~~~-----~~~~-------~~~~ 257 (287)
T TIGR01214 199 -RLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVK--PI---SS---KEYP-----RPAR-------RPAY 257 (287)
T ss_pred -hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeE--ee---cH---HHcC-----CCCC-------CCCc
Confidence 2335678999999999999999999999999765433322100 00 00 0000 0000 0023
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~ 352 (586)
..+|++|++++|||++ .+++++++++++
T Consensus 258 ~~~d~~~~~~~lg~~~-~~~~~~l~~~~~ 285 (287)
T TIGR01214 258 SVLDNTKLVKTLGTPL-PHWREALRAYLQ 285 (287)
T ss_pred cccchHHHHHHcCCCC-ccHHHHHHHHHh
Confidence 5689999999999955 599999998875
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=298.85 Aligned_cols=303 Identities=20% Similarity=0.208 Sum_probs=230.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D~ 87 (586)
+||||||||+||++++++|+++| ++|+++|... +.... .........+++.+.+|+.|.+++.++++ ++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLS-----NGSPE-ALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCC-----ccchh-hhhhhccccceEEEECCCCCHHHHHHHHHhCCCcE
Confidence 58999999999999999999999 4888855321 11000 01110011257788999999999999886 6999
Q ss_pred EEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|||+|+... ...++...++.|+.++.+++++|.+.+++++|++||.++||.. ...+.+|+.+ ..|.+.|+.+|
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~--~~~~~~e~~~--~~~~~~y~~sK 149 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEP--SSIPISEDSP--LGPINPYGRSK 149 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCC--CCCCccccCC--CCCCCchHHHH
Confidence 999999752 2345677889999999999999999999999999999999643 2235677764 46888999999
Q ss_pred HHHHHHHHhhcCC-CCceEEEEeCCCcccCCCC-----------CcHHHHHHHhc-CCCceEEE------cCCCcccccc
Q 007866 165 AQAEALVLFANNI-DGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAK-PGWTKFII------GSGENMSDFT 225 (586)
Q Consensus 165 ~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~-----------~~~~~l~~~~~-~g~~~~i~------g~g~~~~~~i 225 (586)
..+|.+++.++.+ .+++++++||+.+||+... .+++.+..... ....+..+ ++|+..++||
T Consensus 150 ~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 229 (328)
T TIGR01179 150 LMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYI 229 (328)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeee
Confidence 9999999998776 7899999999999998532 23444444443 23333333 3567789999
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
|++|+|+++..+++... ....+++||+++++++|++|+++.+.+.+|.+.+....|...
T Consensus 230 ~~~D~a~~~~~~~~~~~---~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~------------------ 288 (328)
T TIGR01179 230 HVMDLADAHLAALEYLL---NGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRP------------------ 288 (328)
T ss_pred eHHHHHHHHHHHHhhhh---cCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCC------------------
Confidence 99999999999987421 224568999999999999999999999999875433222100
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCC-hHHHHHHHHHHHHHh
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHL 357 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-lee~i~~~i~~~~~~ 357 (586)
..+ .....|++|++++|||+|+++ ++++++++++|++++
T Consensus 289 --~~~-----------~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 289 --GDP-----------ASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred --ccc-----------cchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 000 123468999999999999997 999999999999764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=303.09 Aligned_cols=292 Identities=20% Similarity=0.153 Sum_probs=211.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-------CCCCeEEEEccCCCHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-------SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-------~~~~~~~~~~Dl~d~~~ 77 (586)
+++|+||||||+||||++++++|+++| ++|+++. |..+.. .+.... ...++.++.+|++|.++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~--------r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAV--------DTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHH
Confidence 467899999999999999999999999 4888733 221100 000000 01257889999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCC---ChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCc--cccccCCCC--CCCCCCC
Q 007866 78 IKKVLEGASTVFYVDATDLNTD---DFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTA--DVVFDGSHD--IHNGDET 149 (586)
Q Consensus 78 l~~~l~~~D~Vih~aa~~~~~~---~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~--~vyg~~~~~--~~~~~E~ 149 (586)
+.++++++|+|||+|+...... ......++|+.++.+++++|++. +++|+||+||. .+||..... ....+|+
T Consensus 122 l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~ 201 (367)
T PLN02686 122 LHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEE 201 (367)
T ss_pred HHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCC
Confidence 9999999999999999763221 23456789999999999999986 79999999997 477642111 1235665
Q ss_pred ccc----CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 150 LTC----CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 150 ~p~----~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
.+. +..|.++|+.||..+|.+++.+++++|++++++||+++|||++....+..+..+..|. ..++++|. ++|+
T Consensus 202 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~-~~~~g~g~--~~~v 278 (367)
T PLN02686 202 SWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGA-QEMLADGL--LATA 278 (367)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCC-CccCCCCC--cCeE
Confidence 432 3456789999999999999999887899999999999999986432222122333454 34556554 5799
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
||+|+|++++++++.+. +...+++| +++++++++.|+++.+.+.+|.+......|..
T Consensus 279 ~V~Dva~A~~~al~~~~---~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------- 335 (367)
T PLN02686 279 DVERLAEAHVCVYEAMG---NKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSS------------------- 335 (367)
T ss_pred EHHHHHHHHHHHHhccC---CCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchh-------------------
Confidence 99999999999998321 22346688 88889999999999999999876543322210
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCCh
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSL 343 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l 343 (586)
.+. . ...+..|++|++++|||+|+...
T Consensus 336 ---~~~-d-------~~~~~~d~~kl~~~l~~~~~~~~ 362 (367)
T PLN02686 336 ---SDD-T-------PARFELSNKKLSRLMSRTRRCCY 362 (367)
T ss_pred ---hcC-C-------cccccccHHHHHHHHHHhhhccc
Confidence 000 0 02456799999999999997443
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.41 Aligned_cols=273 Identities=18% Similarity=0.206 Sum_probs=211.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+|+||||||+||||++++++|+++| .++|+++|+.. ... .+...+...++.++.+|++|.+++.+++++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~--------~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~ 74 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE--------LKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG 74 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh--------hHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhc
Confidence 46899999999999999999999986 24788854432 110 001111224688999999999999999999
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||+||... ...++...+++|+.|+.+++++|+++|++++||+||... ..|.++|+
T Consensus 75 iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~------------------~~p~~~Y~ 136 (324)
T TIGR03589 75 VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA------------------ANPINLYG 136 (324)
T ss_pred CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC------------------CCCCCHHH
Confidence 999999999752 345678899999999999999999999999999999632 24567899
Q ss_pred HHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC-ceEEEcCCCccccccchhHHHHHHHHH
Q 007866 162 DLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 162 ~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
.||..+|.+++.++ ..+|++++++||+++|||+. .+++.+.+.+..+. ++++ +++++.++|+|++|++++++.+
T Consensus 137 ~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-~~i~~~~~~~~~~~~~~~i-~~~~~~r~~i~v~D~a~a~~~a 214 (324)
T TIGR03589 137 ATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-SVVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKS 214 (324)
T ss_pred HHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC-CcHHHHHHHHHhCCCCeee-CCCCceEeeEEHHHHHHHHHHH
Confidence 99999999997743 45799999999999999975 57788888777776 3444 5788899999999999999999
Q ss_pred HHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (586)
++. ...+++| +++++.+++.|+++.+.+..+.+. .| ..+....
T Consensus 215 l~~------~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~----~~-----------------------~~~g~~~--- 257 (324)
T TIGR03589 215 LER------MLGGEIF-VPKIPSMKITDLAEAMAPECPHKI----VG-----------------------IRPGEKL--- 257 (324)
T ss_pred Hhh------CCCCCEE-ccCCCcEEHHHHHHHHHhhCCeeE----eC-----------------------CCCCchh---
Confidence 882 2346777 566678999999999998653321 11 0010000
Q ss_pred HHhccceeechhhHhhccCCCCCCChHHHHH
Q 007866 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348 (586)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~ 348 (586)
.....|.+|++++|||+|+++++++++
T Consensus 258 ----~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 258 ----HEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred ----HhhhcChhhhhhhcCCCCeEEEccccc
Confidence 112469999999999999999999986
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=314.35 Aligned_cols=328 Identities=20% Similarity=0.105 Sum_probs=242.3
Q ss_pred CeEEEEcCCCchHHHHHHHHH--hcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCeEEEEccCCCH------HH
Q 007866 9 RTCVVLNGRGFVGRSLVLRLL--ELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDI------SQ 77 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~--~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l~~~~~~~~~~Dl~d~------~~ 77 (586)
|+|||||||||||++++++|+ +.| ++|+++++ ......... .....+++++.+|+.|+ +.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R--------~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~ 71 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVR--------RQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEAD 71 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEEC--------cchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHH
Confidence 589999999999999999999 578 49999544 221111000 01124689999999983 45
Q ss_pred HHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCc-ccCCCC
Q 007866 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL-TCCWKF 156 (586)
Q Consensus 78 l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~-p~~~~p 156 (586)
+.++ +++|+||||||......++....++|+.|+.+++++|++.++++|||+||.++||.... +.+|+. +.+..+
T Consensus 72 ~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~---~~~e~~~~~~~~~ 147 (657)
T PRK07201 72 IAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG---VFREDDFDEGQGL 147 (657)
T ss_pred HHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC---ccccccchhhcCC
Confidence 5555 89999999999875556677889999999999999999999999999999999975322 334433 223455
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhc-CCCceEEEcCCCccccccc
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAK-PGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~-~g~~~~i~g~g~~~~~~i~ 226 (586)
.++|+.+|..+|+++++. .|++++++||+++||+...+. +..++.... ........+++....+++|
T Consensus 148 ~~~Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (657)
T PRK07201 148 PTPYHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVP 224 (657)
T ss_pred CCchHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeee
Confidence 678999999999999863 589999999999999864321 111222221 1222345566677889999
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCC---CCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR---PFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~---~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
++|+++++..+++ .+...|++||+++++++++.|+++.+.+.+|.+. +...+|.++......+.........
T Consensus 225 vddva~ai~~~~~-----~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 299 (657)
T PRK07201 225 VDYVADALDHLMH-----KDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRN 299 (657)
T ss_pred HHHHHHHHHHHhc-----CcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHH
Confidence 9999999998876 3456788999999999999999999999999987 7778999887776653211111100
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhcc---CCCCCCChHHHHHHHHHHHHHhhh
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHI---GYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~L---G~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.. .......+..+.....+..||++++++.| |+.+. .+++.+...+++|.++..
T Consensus 300 ~~-~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~ 356 (657)
T PRK07201 300 AV-ATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLD 356 (657)
T ss_pred HH-HHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCC
Confidence 00 01233456778888888999999999999 55554 788999999998877643
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=283.23 Aligned_cols=279 Identities=22% Similarity=0.270 Sum_probs=203.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
||||||||+|++|+++.+.|.++| ++|.+ ..|. ..|+.|.+++.+.++ ++|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~--------~~r~------------------~~dl~d~~~~~~~~~~~~pd 53 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIA--------TSRS------------------DLDLTDPEAVAKLLEAFKPD 53 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEE--------ESTT------------------CS-TTSHHHHHHHHHHH--S
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEE--------eCch------------------hcCCCCHHHHHHHHHHhCCC
Confidence 799999999999999999999999 58888 4332 569999999999986 489
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+||||||... .+.+|+..+++|+.++.+++++|.+.|. ++||+||..||... ...+.+|++ +.+|.+.||.+
T Consensus 54 ~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~--~~~~y~E~d--~~~P~~~YG~~ 128 (286)
T PF04321_consen 54 VVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGD--KGGPYTEDD--PPNPLNVYGRS 128 (286)
T ss_dssp EEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SS--TSSSB-TTS------SSHHHHH
T ss_pred eEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCC--cccccccCC--CCCCCCHHHHH
Confidence 9999999873 4668999999999999999999999997 89999999999532 334578877 45899999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|+.+++.+. +.+++|++.+||+....++..+.+.+.+++.+.+.. +..+..+|++|+|+++..+++....
T Consensus 129 K~~~E~~v~~~~~----~~~IlR~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 129 KLEGEQAVRAACP----NALILRTSWVYGPSGRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHHHHHHH-S----SEEEEEE-SEESSSSSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CEEEEecceecccCCCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhccc
Confidence 9999999998643 689999999999977788999999999999877765 5788999999999999999985332
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc-cCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI-KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i-~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
+ ....++||+++++.+|+.|+++.+++.+|.+...+ +++.. ..+ .... ...
T Consensus 203 ~--~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~---------------------~~~-~~~~----rp~ 254 (286)
T PF04321_consen 203 G--ASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSS---------------------EFP-RAAP----RPR 254 (286)
T ss_dssp ---GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESST---------------------TST-TSSG----S-S
T ss_pred c--cccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccc---------------------cCC-CCCC----CCC
Confidence 1 12356999999999999999999999999876332 22211 000 0000 113
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHHH
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~ 354 (586)
+..+|++|+++.+|++|. +++++++++++.|
T Consensus 255 ~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 255 NTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp BE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred cccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 567899999999999997 9999999998865
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=276.69 Aligned_cols=226 Identities=31% Similarity=0.385 Sum_probs=193.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC--CEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA--STV 88 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~--D~V 88 (586)
|||||||||||++++++|+++|+ .|+. +.|.+....... ...+++++.+|+.|.+.+.+++++. |+|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-~v~~--------~~~~~~~~~~~~--~~~~~~~~~~dl~~~~~~~~~~~~~~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-EVIV--------LSRSSNSESFEE--KKLNVEFVIGDLTDKEQLEKLLEKANIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-EEEE--------EESCSTGGHHHH--HHTTEEEEESETTSHHHHHHHHHHHTESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-cccc--------cccccccccccc--ccceEEEEEeeccccccccccccccCceEE
Confidence 79999999999999999999995 7776 444433211100 0127899999999999999999865 999
Q ss_pred EEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 89 FYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 89 ih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
||+|+... ...++...++.|+.++.+++++|++.+++++||+||..+|+.. ...+.+|+.+. .|.++|+.+|.
T Consensus 70 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~--~~~~~~e~~~~--~~~~~Y~~~K~ 145 (236)
T PF01370_consen 70 IHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDP--DGEPIDEDSPI--NPLSPYGASKR 145 (236)
T ss_dssp EEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSS--SSSSBETTSGC--CHSSHHHHHHH
T ss_pred EEeecccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc--ccccccccccc
Confidence 99999852 2357789999999999999999999999999999999999765 34467888753 89999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCC-----CCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHH
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPG-----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~-----~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~ 240 (586)
.+|++++.+.++++++++++||+++|||+ ...+++.++..+.+|+++.++++++++++|+|++|+|++++.+++.
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 225 (236)
T PF01370_consen 146 AAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALEN 225 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhC
Confidence 99999999988789999999999999998 2367888999999999889999999999999999999999999993
Q ss_pred hhcccccCCCcEEEEe
Q 007866 241 LDSRMVSVAGMAFFIT 256 (586)
Q Consensus 241 ~~~~~~~~~g~~~ni~ 256 (586)
+...+++|||+
T Consensus 226 -----~~~~~~~yNig 236 (236)
T PF01370_consen 226 -----PKAAGGIYNIG 236 (236)
T ss_dssp -----SCTTTEEEEES
T ss_pred -----CCCCCCEEEeC
Confidence 44688999996
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=294.49 Aligned_cols=258 Identities=18% Similarity=0.208 Sum_probs=196.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|+||||+||||++++++|+++|+ +|+++++ ..... ...+++++.+|++|.+++.++++++|+|
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~-~Vv~l~R--------~~~~~------~~~~v~~v~gDL~D~~~l~~al~~vD~V 65 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH-EVVGIAR--------HRPDS------WPSSADFIAADIRDATAVESAMTGADVV 65 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC--------Cchhh------cccCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 5899999999999999999999995 9999543 32110 1135789999999999999999999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
||+|+.... ..++|+.++.|++++|+++|++++||+||.+ |..+|
T Consensus 66 VHlAa~~~~------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~-----------------------------K~aaE 110 (854)
T PRK05865 66 AHCAWVRGR------NDHINIDGTANVLKAMAETGTGRIVFTSSGH-----------------------------QPRVE 110 (854)
T ss_pred EECCCcccc------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH-----------------------------HHHHH
Confidence 999986421 5689999999999999999999999999852 88899
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccC
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
+++.+ ++++++++||+++|||+. +.++..+.. .++...|+++..++|+|++|+|+++..+++ .+..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~----~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~-----~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNV----DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALL-----DTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCCh----HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHh-----CCCc
Confidence 98865 589999999999999973 223333322 222333455667899999999999999886 2344
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeech
Q 007866 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDC 328 (586)
Q Consensus 249 ~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 328 (586)
.+++|||++++++|+.|+++.+.+... .++..... ..+ .............+|+
T Consensus 177 ~ggvyNIgsg~~~Si~EIae~l~~~~~------~v~~~~~~-----------~~~---------~~~~~~~~~~~~~~D~ 230 (854)
T PRK05865 177 DSGPVNLAAPGELTFRRIAAALGRPMV------PIGSPVLR-----------RVT---------SFAELELLHSAPLMDV 230 (854)
T ss_pred CCCeEEEECCCcccHHHHHHHHhhhhc------cCCchhhh-----------hcc---------chhhhhcccCCccCCH
Confidence 567999999999999999999876431 11111100 000 0001111112346799
Q ss_pred hhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 329 IAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 329 ~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
+|++++|||+|+++++++++++++||+.
T Consensus 231 sKar~~LGw~P~~sLeeGL~dti~~~r~ 258 (854)
T PRK05865 231 TLLRDRWGFQPAWNAEECLEDFTLAVRG 258 (854)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=244.34 Aligned_cols=287 Identities=17% Similarity=0.182 Sum_probs=227.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+++||||||+|.+|+++++.+.+.|. .+.+. . ..-.+||++.++.+++|+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf---------~-----------------~skd~DLt~~a~t~~lF~~e 54 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVF---------I-----------------GSKDADLTNLADTRALFESE 54 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEE---------e-----------------ccccccccchHHHHHHHhcc
Confidence 47999999999999999999999873 12222 0 112469999999999996
Q ss_pred CCCEEEEcccCC----CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc--CC-CC
Q 007866 84 GASTVFYVDATD----LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CW-KF 156 (586)
Q Consensus 84 ~~D~Vih~aa~~----~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~--~~-~p 156 (586)
++..|||+||.. .....+..++..|.+-.-|++..|-++|+++++++.|.++| .+....|++|++-. |+ ..
T Consensus 55 kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIf--Pdkt~yPIdEtmvh~gpphps 132 (315)
T KOG1431|consen 55 KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIF--PDKTSYPIDETMVHNGPPHPS 132 (315)
T ss_pred CCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeec--CCCCCCCCCHHHhccCCCCCC
Confidence 589999999987 23555778899999999999999999999999999999999 44556789998743 22 23
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHH----HhcCCC-ceEEEcCCCcccccc
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVN----LAKPGW-TKFIIGSGENMSDFT 225 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~----~~~~g~-~~~i~g~g~~~~~~i 225 (586)
+-+|+..|.++.-.-+.|..++|...+..-|+++|||.++ .++|.++. +-.+|. .+.++|.|.+.|+|+
T Consensus 133 N~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFi 212 (315)
T KOG1431|consen 133 NFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFI 212 (315)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHh
Confidence 4589999999888889999999999999999999999875 45665554 334565 788999999999999
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC--CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~--~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
|++|+|++++..++.. ..-+..+++.++ .+|++|.++++.++.+.+....- ....
T Consensus 213 ys~DLA~l~i~vlr~Y------~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~-----------------DttK 269 (315)
T KOG1431|consen 213 YSDDLADLFIWVLREY------EGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVW-----------------DTTK 269 (315)
T ss_pred hHhHHHHHHHHHHHhh------cCccceEeccCccceeEHHHHHHHHHHHhCCCceEEe-----------------eccC
Confidence 9999999999999843 223566888777 79999999999999987654211 0011
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCC-hHHHHHHHHHHHHHhhhc
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-lee~i~~~i~~~~~~~~~ 360 (586)
..| . ...+.|++|++. |+|.|+++ ++++|.++++||.++...
T Consensus 270 ~DG-q-------------~kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~q 312 (315)
T KOG1431|consen 270 SDG-Q-------------FKKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQ 312 (315)
T ss_pred CCC-C-------------cccccchHHHHH-hCCCcccChHHHHHHHHHHHHHHhHHh
Confidence 111 0 123569999997 89999986 999999999999998653
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=253.48 Aligned_cols=273 Identities=22% Similarity=0.226 Sum_probs=222.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+|||||++|++|++|++.|. .+ ++|.. +.|.. .|+.|++.+.+++. .+|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a--------~~~~~------------------~Ditd~~~v~~~i~~~~PD 52 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIA--------TDRAE------------------LDITDPDAVLEVIRETRPD 52 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEe--------ccCcc------------------ccccChHHHHHHHHhhCCC
Confidence 459999999999999999999 44 68888 44421 79999999999997 489
Q ss_pred EEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+|++. ..+.+++..+.+|..|+.|++++|++.|. ++||+||-.||. |. ...+..|++ +..|.+.||.|
T Consensus 53 vVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFD-G~-~~~~Y~E~D--~~~P~nvYG~s 127 (281)
T COG1091 53 VVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFD-GE-KGGPYKETD--TPNPLNVYGRS 127 (281)
T ss_pred EEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEec-CC-CCCCCCCCC--CCCChhhhhHH
Confidence 999999998 46778999999999999999999999998 899999999983 22 234688887 56999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|+.+++++ -+..++|.+.+||...++++..+++.+.+|+.+.+.. ++....++++|+|+++..+++
T Consensus 128 Kl~GE~~v~~~~----~~~~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~---- 197 (281)
T COG1091 128 KLAGEEAVRAAG----PRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLE---- 197 (281)
T ss_pred HHHHHHHHHHhC----CCEEEEEeeeeecCCCCCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHh----
Confidence 999999999964 4579999999999988889999999999999876664 588889999999999999887
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCcc-CCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK-LPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~-vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
....+.+||+++...+||.|+++.|.+..+.+...+. ++.. + .+ .....| .
T Consensus 198 --~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~-------------~-~~-~~a~RP-----------~ 249 (281)
T COG1091 198 --KEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASA-------------E-YP-TPAKRP-----------A 249 (281)
T ss_pred --ccccCcEEEEeCCCcccHHHHHHHHHHHhCCCcccccccccc-------------c-cC-ccCCCC-----------c
Confidence 3444559999998889999999999999986543221 1100 0 00 000111 2
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHH
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~ 353 (586)
...+|+.|+.+.+|++|. +++++++++++.
T Consensus 250 ~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 250 NSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred ccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 356799999999999997 999999988764
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=275.11 Aligned_cols=257 Identities=20% Similarity=0.162 Sum_probs=207.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCC-CCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDS-LSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~----~~~~-l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
..+|+|+|||||||||++++++|+++| ++|+++++. ..+.. .... ...++++++.+|++|++++.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~--------~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVARE--------KSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRK 128 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEec--------hhhccccchhhHHhhhcCCceEEEeeCCCHHHHHH
Confidence 457899999999999999999999999 599995443 22100 0000 012468999999999999999
Q ss_pred Hhc----CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 81 VLE----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 81 ~l~----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
+++ ++|+||||++... ......+++|+.++.|++++|++.|++|||++||.++| .|
T Consensus 129 ~~~~~~~~~D~Vi~~aa~~~--~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~------------------~p 188 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLASRT--GGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQ------------------KP 188 (390)
T ss_pred HHHHhCCCCcEEEECCccCC--CCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecccc------------------Cc
Confidence 997 5999999988642 12234578899999999999999999999999999775 23
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc-cccchhHHHHHHH
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHV 235 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~ 235 (586)
...|..+|...|+.+.. ...+++++++||+.+||+. ..++..+.+|+++.++|+|+..+ ++||++|+|++++
T Consensus 189 ~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~ 261 (390)
T PLN02657 189 LLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIA 261 (390)
T ss_pred chHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-----HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHH
Confidence 45688999999999876 2368999999999999752 23556777888877889988755 6799999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 236 CAAEALDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
.+++ .+...+++|||+++ +.+|++|+++.+.+.+|++.....+|.+++.....+.+.+...+.
T Consensus 262 ~~~~-----~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~~~~~~~~~~~~~~~~~~~ 325 (390)
T PLN02657 262 DCVL-----DESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPIQIMDFAIGVLDFLAKIFP 325 (390)
T ss_pred HHHh-----CccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCHHHHHHHHHHHHHhhhhCc
Confidence 9887 35567899999986 689999999999999999888889999998888887777666543
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=282.85 Aligned_cols=260 Identities=18% Similarity=0.153 Sum_probs=196.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCC----CC-C----------------C---C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSL----LP-D----------------S---L 60 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~----~~-~----------------~---l 60 (586)
.+++|||||||||+|+++++.|++.+. .+|+++ .|...... +. + . .
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~L--------vR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~ 81 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLL--------LRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSL 81 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEE--------EeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhh
Confidence 468999999999999999999998642 257774 33322100 00 0 0 0
Q ss_pred CCCCeEEEEccCC-------CHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecC
Q 007866 61 SSGRAEYHQVDVR-------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNST 132 (586)
Q Consensus 61 ~~~~~~~~~~Dl~-------d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS 132 (586)
...+++++.+|+. |.+.+.++++++|+|||+||......++...+++|+.||.+++++|+++ +++++||+||
T Consensus 82 ~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 82 ISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred hhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 1257899999998 4555778889999999999988767788999999999999999999986 7999999999
Q ss_pred ccccccCCCC--CCCCC--CC---------------------------c---------------c-cCCCCCChHHHHHH
Q 007866 133 ADVVFDGSHD--IHNGD--ET---------------------------L---------------T-CCWKFQDLMCDLKA 165 (586)
Q Consensus 133 ~~vyg~~~~~--~~~~~--E~---------------------------~---------------p-~~~~p~~~Y~~sK~ 165 (586)
++|||..... ..+.+ ++ . + ....+.+.|+.||+
T Consensus 162 ~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~ 241 (491)
T PLN02996 162 AYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKA 241 (491)
T ss_pred eEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHH
Confidence 9999763210 00111 00 0 0 01224567999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
.+|+++..++. +++++++||+++|||+..+. ...++..+.+|....++++|++.+|++||+|++++++.
T Consensus 242 ~aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~ 319 (491)
T PLN02996 242 MGEMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIV 319 (491)
T ss_pred HHHHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHH
Confidence 99999998864 89999999999999976431 23345556778877789999999999999999999999
Q ss_pred HHHHhhcccccCCCcEEEEeCC--CCcCHHHHHHHHHHHcCCCC
Q 007866 237 AAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQR 278 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~--~~~t~~ei~~~i~~~~g~~~ 278 (586)
++.... .....+++||++++ .++|+.|+++.+.+..+..+
T Consensus 320 a~~~~~--~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 320 AMAAHA--GGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHhh--ccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 887310 01124679999988 88999999999998886543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=262.46 Aligned_cols=284 Identities=18% Similarity=0.167 Sum_probs=202.1
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (586)
||||||+||||+++++.|+++| ++|++++ |.+.... .. .. ....|+.+ ....+.+.++|+|||
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~--------r~~~~~~--~~-~~----~~~~~~~~-~~~~~~~~~~D~Vvh 63 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILT--------RSPPAGA--NT-KW----EGYKPWAP-LAESEALEGADAVIN 63 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEe--------CCCCCCC--cc-cc----eeeecccc-cchhhhcCCCCEEEE
Confidence 6899999999999999999999 5999944 4333110 00 00 01123322 344567789999999
Q ss_pred cccCCCC-----CCChhHHHHHHHHHHHHHHHHHHhCCCC--EEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 91 VDATDLN-----TDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 91 ~aa~~~~-----~~~~~~~~~~Nv~gt~~lleaa~~~gvk--r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|+.... ..++...+++|+.++.+++++|++++++ ++|++||.++||... ..+.+|+.+ ..+.+.|+..
T Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~--~~~~~E~~~--~~~~~~~~~~ 139 (292)
T TIGR01777 64 LAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSE--DRVFTEEDS--PAGDDFLAEL 139 (292)
T ss_pred CCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCC--CCCcCcccC--CCCCChHHHH
Confidence 9997522 1245678899999999999999999874 577777778887532 235677763 3455667777
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
+...|..+.... +.+++++++||+.+|||++. ..+.+......... ..+++++++++|+|++|+|+++..+++
T Consensus 140 ~~~~e~~~~~~~-~~~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~---- 212 (292)
T TIGR01777 140 CRDWEEAAQAAE-DLGTRVVLLRTGIVLGPKGG-ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALE---- 212 (292)
T ss_pred HHHHHHHhhhch-hcCCceEEEeeeeEECCCcc-hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhc----
Confidence 877888776543 36899999999999999753 33444333322211 235788999999999999999999987
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
.+.. +++||+++++++|++|+++.+.+.+|.+.+ +.+|.+.+... ++ ..+ . .+..+
T Consensus 213 -~~~~-~g~~~~~~~~~~s~~di~~~i~~~~g~~~~-~~~p~~~~~~~----------~~----~~~----~---~~~~~ 268 (292)
T TIGR01777 213 -NASI-SGPVNATAPEPVRNKEFAKALARALHRPAF-FPVPAFVLRAL----------LG----EMA----D---LLLKG 268 (292)
T ss_pred -Cccc-CCceEecCCCccCHHHHHHHHHHHhCCCCc-CcCCHHHHHHH----------hc----hhh----H---HHhCC
Confidence 2333 458999999999999999999999997653 56887764332 11 001 1 12246
Q ss_pred eeechhhHhhccCCCCCC-ChHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVV-SLEEGV 347 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~-~lee~i 347 (586)
.+.+++|+++ +||+|++ +++|++
T Consensus 269 ~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 269 QRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred cccccHHHHh-cCCeeeCcChhhcC
Confidence 6789999985 9999999 588763
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=263.61 Aligned_cols=247 Identities=21% Similarity=0.173 Sum_probs=184.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCCC-CCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL-SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~----~~~~l-~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+++|+||||+||||++++++|+++| ++|+++ .|+..... +.... ...+++++.+|+.|.+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~--------~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAA--------VQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEE--------EcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence 46799999999999999999999999 599984 44211100 01100 123688899999999999999
Q ss_pred hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccC---CCCCCCCCCCcccCC--
Q 007866 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDG---SHDIHNGDETLTCCW-- 154 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~---~~~~~~~~E~~p~~~-- 154 (586)
+.++|+|+|+++... ...+++.++++|+.|+.+++++|.+. +++|+|++||.++++.+ .....+.+|+.|.+.
T Consensus 76 l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~ 155 (297)
T PLN02583 76 LKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNF 155 (297)
T ss_pred HcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHH
Confidence 999999999876542 22346789999999999999999886 68999999999876432 122335677664211
Q ss_pred --CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 155 --KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 155 --~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
.+..+|+.||..+|++++.+++++|++++++||+++|||+.....+ ...+.. ...+ ...++|||++|+|+
T Consensus 156 ~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~-----~~~~~~-~~~~--~~~~~~v~V~Dva~ 227 (297)
T PLN02583 156 CRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP-----YLKGAA-QMYE--NGVLVTVDVNFLVD 227 (297)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh-----hhcCCc-ccCc--ccCcceEEHHHHHH
Confidence 1233799999999999999887679999999999999998653322 122221 2222 23467999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~ 276 (586)
++++|++ .+...+ .|+++++....+.++++++.+.++.
T Consensus 228 a~~~al~-----~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~p~ 265 (297)
T PLN02583 228 AHIRAFE-----DVSSYG-RYLCFNHIVNTEEDAVKLAQMLSPL 265 (297)
T ss_pred HHHHHhc-----CcccCC-cEEEecCCCccHHHHHHHHHHhCCC
Confidence 9999998 344444 7888886666678899999998763
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=252.92 Aligned_cols=272 Identities=12% Similarity=0.046 Sum_probs=196.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
+.|+||||||+||||++|+++|+++|+ +|+. .. +|+.|.+.+...++ +
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~--------~~---------------------~~~~~~~~v~~~l~~~~ 57 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHY--------GS---------------------GRLENRASLEADIDAVK 57 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEE--------ec---------------------CccCCHHHHHHHHHhcC
Confidence 458999999999999999999999995 7765 11 23455566666665 6
Q ss_pred CCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCC----CCCCCCCcccCC
Q 007866 85 ASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHD----IHNGDETLTCCW 154 (586)
Q Consensus 85 ~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~----~~~~~E~~p~~~ 154 (586)
+|+|||+||... ...++...+++|+.|+.|++++|+++|++ +++.||.++|+.+... ..+.+|+++ +.
T Consensus 58 ~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~-p~ 135 (298)
T PLN02778 58 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT-PN 135 (298)
T ss_pred CCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEecceEeCCCCCCCcccCCCCCcCCC-CC
Confidence 899999999862 23578899999999999999999999996 5667777888654311 224566553 33
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHH
Q 007866 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (586)
Q Consensus 155 ~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (586)
.|.++|+.||..+|.++..+++ ..++|++..+|++.. ....++..+..++.+...+ .+++|++|+++|+
T Consensus 136 ~~~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~-~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al 204 (298)
T PLN02778 136 FTGSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIP-----NSMTILDELLPIS 204 (298)
T ss_pred CCCCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc-cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHH
Confidence 4568999999999999998753 467888888886532 2344677777776544433 3799999999999
Q ss_pred HHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC--CccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 235 ~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~--~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+.+++ ... +++||+++++++|+.|+++.+.+.+|.+.. .+.++..
T Consensus 205 ~~~l~------~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~-------------------------- 251 (298)
T PLN02778 205 IEMAK------RNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQ-------------------------- 251 (298)
T ss_pred HHHHh------CCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHH--------------------------
Confidence 99887 223 359999999999999999999999986422 1222100
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
............+|.+|+++.++=.+. ..++++++..+-++.
T Consensus 252 -~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 252 -AKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred -HHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHHHHh
Confidence 000000112235899999998765444 667888877776644
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=238.13 Aligned_cols=324 Identities=19% Similarity=0.118 Sum_probs=240.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
++|+.||||-||+-|++|++.|+++| |+|+++.+.++. .++..-.+. ......++.++.+|++|...+.++++.
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~---~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~ 76 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSS---FNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEE 76 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcC-cEEEEEeecccc---CCcccceeccccccCCceeEEEeccccchHHHHHHHHh
Confidence 36899999999999999999999999 799996554321 111100010 112334588999999999999999974
Q ss_pred --CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 85 --ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 85 --~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+|-|+|+||.+ .+..+|..+.+++..||.|++|+.+..|. .||.++||+..||.. ...|.+|+. |..|.
T Consensus 77 v~PdEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v--~~~pq~E~T--PFyPr 152 (345)
T COG1089 77 VQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLV--QEIPQKETT--PFYPR 152 (345)
T ss_pred cCchhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCc--ccCccccCC--CCCCC
Confidence 89999999998 46778999999999999999999999864 489999999999754 345788888 45999
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcH---HHHHHHhcCCCc-eEEEcCCCccccccchhHHH
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLV---PLLVNLAKPGWT-KFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~---~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva 231 (586)
+||+.+|..+--+...|.+.+|+-.|.=+..+--+|... .+. ..-+.+++.|.. ....|+-+..|||-|+.|.+
T Consensus 153 SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYV 232 (345)
T COG1089 153 SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYV 232 (345)
T ss_pred CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHH
Confidence 999999999999999999989998887666666666432 222 233344444443 45678899999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH-HHhcccc--CC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH-EKLGLRT--YN 308 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~-~~~~~~~--~~ 308 (586)
+++..+++ +...+.|+|+.++..|++|++++..+..|.+....--- +-|... ...|..- .+
T Consensus 233 e~mwlmLQ-------q~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g---------~~e~g~da~~G~~~V~id 296 (345)
T COG1089 233 EAMWLMLQ-------QEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTG---------VDEKGVDAKTGKIIVEID 296 (345)
T ss_pred HHHHHHHc-------cCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeecc---------ccccccccccCceeEEEC
Confidence 99999998 23357999999999999999999999999653311000 000000 0000000 12
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
+..+.|..+..+ .-|.+||++.|||+|+++++|-+++|+++..+..
T Consensus 297 p~~fRPaEV~~L----lgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 297 PRYFRPAEVDLL----LGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred ccccCchhhhhh----cCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 233444444332 4599999999999999999999999999876643
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=252.13 Aligned_cols=259 Identities=21% Similarity=0.194 Sum_probs=190.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCC----CC---------CC-CCCCCCeEEEEccCCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNS----LL---------PD-SLSSGRAEYHQVDVRD 74 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~----~~---------~~-~l~~~~~~~~~~Dl~d 74 (586)
+|+|||||||||++++++|+++|+ ++|+++ .|..+.. .+ .. .....+++++.+|+.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l--------~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 72 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICL--------VRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSE 72 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEE--------EccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCc
Confidence 589999999999999999999985 379994 4432210 00 00 0001478999999875
Q ss_pred ------HHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 75 ------ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 75 ------~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
.+.+.++.+++|+|||+|+......+.....++|+.++.+++++|.+.++++++|+||.++|+..... +..|
T Consensus 73 ~~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~--~~~~ 150 (367)
T TIGR01746 73 PRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLS--TVTE 150 (367)
T ss_pred ccCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCC--Cccc
Confidence 35667777899999999998765666778889999999999999999999999999999999754322 1233
Q ss_pred Cccc---CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEEcCCC
Q 007866 149 TLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 149 ~~p~---~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.+. ...+.+.|+.+|..+|.+++.+.+ .|++++++||+.+||+...+ .+..++....... ..++..
T Consensus 151 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~---~~p~~~ 226 (367)
T TIGR01746 151 DDAIVTPPPGLAGGYAQSKWVAELLVREASD-RGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG---AYPDSP 226 (367)
T ss_pred cccccccccccCCChHHHHHHHHHHHHHHHh-cCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhC---CCCCCC
Confidence 3221 223457899999999999998876 49999999999999974332 2223333222221 222333
Q ss_pred -ccccccchhHHHHHHHHHHHHhhcccccC--CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHH
Q 007866 220 -NMSDFTYVENVAHAHVCAAEALDSRMVSV--AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (586)
Q Consensus 220 -~~~~~i~v~Dva~ai~~ale~~~~~~~~~--~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~ 288 (586)
...+|+|++|+|++++.++. .+.. .+++||+++++++++.|+++.+.+ .|.+.+.+..+.|+.
T Consensus 227 ~~~~~~~~vddva~ai~~~~~-----~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~~~~~~w~~ 292 (367)
T TIGR01746 227 ELTEDLTPVDYVARAIVALSS-----QPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKLVSFDEWLQ 292 (367)
T ss_pred ccccCcccHHHHHHHHHHHHh-----CCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCcCCHHHHHH
Confidence 36789999999999998876 2332 278999999999999999999999 888766666665554
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=243.46 Aligned_cols=238 Identities=26% Similarity=0.317 Sum_probs=180.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeE----EEEccCCCHHHHHHHhc--C
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE----YHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~----~~~~Dl~d~~~l~~~l~--~ 84 (586)
||||||+|.||+.|+++|++.+...++++|++......- .. .+.......+++ .+.+|++|.+.+.++++ +
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l-~~--~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~ 77 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL-ER--ELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYK 77 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH-HH--HCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH-HH--HHhhcccccCcccccCceeecccCHHHHHHHHhhcC
Confidence 799999999999999999999877899977764320000 00 010001222343 46899999999999998 8
Q ss_pred CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||.||.. ..+.+|.+.+++|+.||.|++++|.++||++||++||-.+. +|.+.||
T Consensus 78 pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv------------------~PtnvmG 139 (293)
T PF02719_consen 78 PDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAV------------------NPTNVMG 139 (293)
T ss_dssp -SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCS------------------S--SHHH
T ss_pred CCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccC------------------CCCcHHH
Confidence 99999999987 35889999999999999999999999999999999998764 7889999
Q ss_pred HHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~---gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
.||..+|.++..++... +..++++|+|+|.|.. .+++|.|.+++++|+++.+. +++..|-|+.+++.++.++.|.
T Consensus 140 atKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~a~ 217 (293)
T PF02719_consen 140 ATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-GSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQAA 217 (293)
T ss_dssp HHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-TSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-CcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHHHH
Confidence 99999999999998865 6899999999999975 37999999999999987664 5688899999999999999988
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCC
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~ 277 (586)
. -...|++|..--|+++++.|+++.+.+..|.+
T Consensus 218 ~------~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 218 A------LAKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp H------H--TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred h------hCCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 7 24578899998899999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=249.58 Aligned_cols=242 Identities=22% Similarity=0.272 Sum_probs=207.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
.+|+||||||+|.||+.+++++++.+..+++.+|++...+..= ..++.......+..++.||++|.+.+.+++++
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i---~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLI---DMELREKFPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHH---HHHHHhhCCCcceEEEecccccHHHHHHHHhcCC
Confidence 5799999999999999999999999877899955543210000 00111222246789999999999999999998
Q ss_pred CCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||.||.. ..+.||.+.+++|+.||.|++++|.++||++||.+||-.+. +|.+.||
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV------------------~PtNvmG 387 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAV------------------NPTNVMG 387 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCccc------------------CCchHhh
Confidence 99999999987 46999999999999999999999999999999999998765 7899999
Q ss_pred HHHHHHHHHHHhhcCCC---CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNID---GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~---gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
.||..+|.++.+++++. +..++++|+|||.|.+. +++|-|.+++++|+++.+ .|++..|-|+.++|.++.++.|.
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG-SViPlFk~QI~~GgplTv-Tdp~mtRyfMTI~EAv~LVlqA~ 465 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG-SVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAVQLVLQAG 465 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCC-CCHHHHHHHHHcCCCccc-cCCCceeEEEEHHHHHHHHHHHH
Confidence 99999999999997632 48999999999999763 789999999999998655 57889999999999999999998
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCC
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~ 277 (586)
. -...|++|-+..|+++++.|+++.+.+..|..
T Consensus 466 a------~~~gGeifvldMGepvkI~dLAk~mi~l~g~~ 498 (588)
T COG1086 466 A------IAKGGEIFVLDMGEPVKIIDLAKAMIELAGQT 498 (588)
T ss_pred h------hcCCCcEEEEcCCCCeEHHHHHHHHHHHhCCC
Confidence 7 36778999999999999999999999999843
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=224.86 Aligned_cols=286 Identities=17% Similarity=0.196 Sum_probs=208.6
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-CCCEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GASTVF 89 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-~~D~Vi 89 (586)
|+|||||||||++|+..|.+.|| +|++ ++|++.+.... ....+. ..+.+++..+ ++|+||
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh-~v~i--------ltR~~~~~~~~---~~~~v~-------~~~~~~~~~~~~~DavI 61 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH-QVTI--------LTRRPPKASQN---LHPNVT-------LWEGLADALTLGIDAVI 61 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC-eEEE--------EEcCCcchhhh---cCcccc-------ccchhhhcccCCCCEEE
Confidence 68999999999999999999997 9999 67765532110 011111 1233444555 799999
Q ss_pred EcccCCCC-----CCChhHHHHHHHHHHHHHHHHHHh--CCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 90 YVDATDLN-----TDDFYNCYMIIVQGAKNVVTACRE--CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 90 h~aa~~~~-----~~~~~~~~~~Nv~gt~~lleaa~~--~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|+||..-. ...-+.+.+.-+..|+.|.|+..+ .+.+.+|..|..+-||.. .....+|+.| ...+.-+.
T Consensus 62 NLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~--~~~~~tE~~~---~g~~Fla~ 136 (297)
T COG1090 62 NLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHS--GDRVVTEESP---PGDDFLAQ 136 (297)
T ss_pred ECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCC--CceeeecCCC---CCCChHHH
Confidence 99998722 234577888899999999998874 467788888888888654 4446777753 33445555
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
.-..-|+....... .|.+++.+|.|+|.|+.. +.++.+....+.|-- ...|+|++|++|||++|+++++..+++
T Consensus 137 lc~~WE~~a~~a~~-~gtRvvllRtGvVLs~~G-GaL~~m~~~fk~glG-G~~GsGrQ~~SWIhieD~v~~I~fll~--- 210 (297)
T COG1090 137 LCQDWEEEALQAQQ-LGTRVVLLRTGVVLSPDG-GALGKMLPLFKLGLG-GKLGSGRQWFSWIHIEDLVNAILFLLE--- 210 (297)
T ss_pred HHHHHHHHHhhhhh-cCceEEEEEEEEEecCCC-cchhhhcchhhhccC-CccCCCCceeeeeeHHHHHHHHHHHHh---
Confidence 66666777766544 699999999999999854 344444443433322 356999999999999999999999999
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
+++..| .||++++.|++..||...+.++++++. .+.+|...++.+..- ....+++
T Consensus 211 --~~~lsG-p~N~taP~PV~~~~F~~al~r~l~RP~-~~~vP~~~~rl~LGe--~a~~lL~------------------- 265 (297)
T COG1090 211 --NEQLSG-PFNLTAPNPVRNKEFAHALGRALHRPA-ILPVPSFALRLLLGE--MADLLLG------------------- 265 (297)
T ss_pred --CcCCCC-cccccCCCcCcHHHHHHHHHHHhCCCc-cccCcHHHHHHHhhh--hHHHHhc-------------------
Confidence 456666 899999999999999999999999764 467898887765542 2222332
Q ss_pred ceeechhhHhhccCCCCCC-ChHHHHHHHHH
Q 007866 323 TRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~ 352 (586)
+++.=+.|+.+ .||+.++ ++++++.+.+.
T Consensus 266 gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 266 GQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred cchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 33445677765 7999998 79999988764
|
|
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-31 Score=249.54 Aligned_cols=163 Identities=32% Similarity=0.385 Sum_probs=48.5
Q ss_pred cceeeeccccCcchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccccccCCCC----CCCCCCceeeCH
Q 007866 384 VADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGFNV----KRISPSCFELSE 459 (586)
Q Consensus 384 ~~~~~~w~~~~~s~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e 459 (586)
|+|+++|||+++||++|++++++|++|.++++|++|++|+++++++.+.++++.. .+++++++ +..++.++++||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLL-SKVLSRSPKGPFKEPLDYDLEISE 79 (169)
T ss_dssp ----------------------------------------------------THC-CCTCCHHHHCTTHHHHCHHHHHCC
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCccCCccccccccH
Confidence 6899999999999999999999999999999999999999999999999999999 58877644 233343589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhHHHhhchHHHHhH
Q 007866 460 TVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSKLM--LQSFTWSIGLALVFAFTAFFVYEQYEPEIDGL 537 (586)
Q Consensus 460 ~~~~~~~~~~~~~~n~~~~~~~~l~~~~d~~~~lk~~~~l~~ls~v--~~~~~tl~~~~~~~~~t~p~~Ye~~~~~id~~ 537 (586)
|.++++++.+...+|..+..+|+++.++|+..|+|++++||+++++ ++|++||+|++++++||+|.+||+||++||++
T Consensus 80 ~~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~ 159 (169)
T PF02453_consen 80 ERVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQY 159 (169)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007866 538 AKFLFNYLKK 547 (586)
Q Consensus 538 ~~~~~~~~~~ 547 (586)
++++++++||
T Consensus 160 ~~~~~~~~~k 169 (169)
T PF02453_consen 160 VAKVKEKVKK 169 (169)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999999875
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=251.94 Aligned_cols=266 Identities=13% Similarity=0.150 Sum_probs=190.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccc--cCCCC-C-------------CCCCCCCCCCCCeEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQ--LDPSE-S-------------NSLLPDSLSSGRAEYH 68 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~--l~r~~-~-------------~~~~~~~l~~~~~~~~ 68 (586)
.+++|||||||||||++|+++|++.++ .+|+++.+..... ..|-. + .+.....+...++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 478999999999999999999998763 2678843321100 00000 0 0000001113578999
Q ss_pred EccCCCH------HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCC
Q 007866 69 QVDVRDI------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 69 ~~Dl~d~------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~ 141 (586)
.+|+.++ +....+.+++|+|||+|+......+++...++|+.|+.+++++|++. ++++|||+||+.|||....
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~~G 277 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQG 277 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCCCC
Confidence 9999986 45566667899999999998767789999999999999999999887 4789999999999986431
Q ss_pred --CCCCCC--CC------------------c--------------c------------------cCCCCCChHHHHHHHH
Q 007866 142 --DIHNGD--ET------------------L--------------T------------------CCWKFQDLMCDLKAQA 167 (586)
Q Consensus 142 --~~~~~~--E~------------------~--------------p------------------~~~~p~~~Y~~sK~~~ 167 (586)
.....+ +. + + ......+.|..||+.+
T Consensus 278 ~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~TK~lA 357 (605)
T PLN02503 278 RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVFTKAMG 357 (605)
T ss_pred eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHHHHHHH
Confidence 011111 00 0 0 0022347899999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCc----------ccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHH
Q 007866 168 EALVLFANNIDGLLTCALRPSNV----------FGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v----------~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
|++++++.. +++++++||+.| |++++....+.++. ..+|....++++++...|+|+||.++.+++.+
T Consensus 358 E~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~-~g~G~lr~~~~~~~~~~DiVPVD~vvna~i~a 434 (605)
T PLN02503 358 EMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLY-YGKGQLTGFLADPNGVLDVVPADMVVNATLAA 434 (605)
T ss_pred HHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccccchhhhh-eeccceeEEEeCCCeeEeEEeecHHHHHHHHH
Confidence 999998764 799999999999 55544333443332 34676656889999999999999999999988
Q ss_pred HHHhhcccccCCCcEEEEeCC--CCcCHHHHHHHHHHHcCC
Q 007866 238 AEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGY 276 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~--~~~t~~ei~~~i~~~~g~ 276 (586)
.... .......+++||++++ .|++++|+.+.+.+....
T Consensus 435 ~a~~-~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 435 MAKH-GGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHhh-hcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 5421 1112235789999987 899999999999886653
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=225.83 Aligned_cols=219 Identities=18% Similarity=0.152 Sum_probs=166.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh------c
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL------E 83 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l------~ 83 (586)
+|+||||||++|++++++|+++| ++|++ +.|++++. ...+++.+.+|+.|++++.+++ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~--------~~R~~~~~------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~ 65 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLV--------ASRSSSSS------AGPNEKHVKFDWLDEDTWDNPFSSDDGME 65 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEE--------EeCCCccc------cCCCCccccccCCCHHHHHHHHhcccCcC
Confidence 48999999999999999999999 49999 66765532 1236777889999999999999 6
Q ss_pred C-CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 84 G-ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 84 ~-~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
| +|.|+|+++... + ......+++++|+++|++||||+||..++.. .+
T Consensus 66 g~~d~v~~~~~~~~---~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~----------------~~------ 113 (285)
T TIGR03649 66 PEISAVYLVAPPIP---D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG----------------GP------ 113 (285)
T ss_pred CceeEEEEeCCCCC---C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC----------------Cc------
Confidence 7 999999987531 1 1234578999999999999999999765310 00
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
.+...|+++++. .|++++++||+.+++..... .....+..+.. ...+.|+..++|+|++|+|+++..++.
T Consensus 114 ~~~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~---~~~~~~~~~~~-~~~~~g~~~~~~v~~~Dva~~~~~~l~--- 183 (285)
T TIGR03649 114 AMGQVHAHLDSL---GGVEYTVLRPTWFMENFSEE---FHVEAIRKENK-IYSATGDGKIPFVSADDIARVAYRALT--- 183 (285)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeccHHhhhhccc---ccccccccCCe-EEecCCCCccCcccHHHHHHHHHHHhc---
Confidence 123345555542 48999999999988653211 11222333333 345567888999999999999999887
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+...++.|++++++.+|+.|+++.+.+.+|++.+...+|...
T Consensus 184 --~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~ 226 (285)
T TIGR03649 184 --DKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEE 226 (285)
T ss_pred --CCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHH
Confidence 3556678999999999999999999999999988877777653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=209.82 Aligned_cols=307 Identities=18% Similarity=0.223 Sum_probs=229.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC-CCC-CCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-DSL-SSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~-~~l-~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+-.+-|.|||||+|++++.+|.+.| .+|.+ ..|..+..... +.+ .-..+-+...|++|+++++++.+..
T Consensus 61 GiVaTVFGAtGFlGryvvnklak~G-SQvii--------PyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~s 131 (391)
T KOG2865|consen 61 GIVATVFGATGFLGRYVVNKLAKMG-SQVII--------PYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHS 131 (391)
T ss_pred ceEEEEecccccccHHHHHHHhhcC-CeEEE--------eccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhC
Confidence 3467888999999999999999999 59998 56654421111 111 2246788999999999999999999
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
.+|||+.|......++ .+.++|+.+.++++..|+++||.|||++|+..+ .....+-|-.+|+
T Consensus 132 NVVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~GVerfIhvS~Lga-----------------nv~s~Sr~LrsK~ 193 (391)
T KOG2865|consen 132 NVVINLIGRDYETKNF-SFEDVNVHIAERLARICKEAGVERFIHVSCLGA-----------------NVKSPSRMLRSKA 193 (391)
T ss_pred cEEEEeeccccccCCc-ccccccchHHHHHHHHHHhhChhheeehhhccc-----------------cccChHHHHHhhh
Confidence 9999999997555553 578999999999999999999999999999853 1244567889999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC-CccccccchhHHHHHHHHHHHHhhcc
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG-ENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g-~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
.+|..+++... +.||+||+.+||..| .+++.+....++-..+++++.| +...+.+||-|+|.+|+.|++
T Consensus 194 ~gE~aVrdafP----eAtIirPa~iyG~eD-rfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvk----- 263 (391)
T KOG2865|consen 194 AGEEAVRDAFP----EATIIRPADIYGTED-RFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVK----- 263 (391)
T ss_pred hhHHHHHhhCC----cceeechhhhcccch-hHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhcc-----
Confidence 99999998654 378999999999876 4566666666666666777766 455789999999999999998
Q ss_pred cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhc-cc
Q 007866 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS-RT 323 (586)
Q Consensus 245 ~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 323 (586)
.|...|++|...++..++..|+++.+-+..-+-+.....|.......+...+.. ........+++++.+..+. .+
T Consensus 264 Dp~s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~----~~pf~~~~pln~d~ie~~~v~~ 339 (391)
T KOG2865|consen 264 DPDSMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFM----IVPFPPPSPLNRDQIERLTVTD 339 (391)
T ss_pred CccccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhhee----ecCCCCCCCCCHHHhhheeehh
Confidence 688999999999999999999999998877664444444433322222222221 2222133357888887665 33
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
...+.....++||.+++ ++|..--+.+..|+.
T Consensus 340 ~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~ 371 (391)
T KOG2865|consen 340 LVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRK 371 (391)
T ss_pred hhcCCCCcHhhcCceee-ecccccHHHHHHHhh
Confidence 44566666678999986 777755555554444
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=244.23 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=186.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
..|+||||||+||||++|+++|.++|+ +|.. ..+|++|.+.+.+.+. +
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~-~v~~-----------------------------~~~~l~d~~~v~~~i~~~~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI-AYEY-----------------------------GKGRLEDRSSLLADIRNVK 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC-eEEe-----------------------------eccccccHHHHHHHHHhhC
Confidence 457999999999999999999999994 6632 0135778888888876 6
Q ss_pred CCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCC----CCCCCCCCCcccCC
Q 007866 85 ASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGS----HDIHNGDETLTCCW 154 (586)
Q Consensus 85 ~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~----~~~~~~~E~~p~~~ 154 (586)
+|+||||||... .+.++...+++|+.|+.+++++|++.|++ ++++||.+||+.+. ....+.+|+++ +.
T Consensus 429 pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~-~~ 506 (668)
T PLN02260 429 PTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDK-PN 506 (668)
T ss_pred CCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccccCCCCCcCCC-CC
Confidence 899999999762 23478899999999999999999999995 77888889986432 11235677653 23
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc-eEEEcCCCccccccchhHHHHH
Q 007866 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 155 ~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~a 233 (586)
.+.++||.||..+|++++.+. +..++|+..+||.+... ..+|+..+.+... +.+ + .+..+++|++.+
T Consensus 507 ~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~-~~nfv~~~~~~~~~~~v-p-----~~~~~~~~~~~~ 574 (668)
T PLN02260 507 FTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN-PRNFITKISRYNKVVNI-P-----NSMTVLDELLPI 574 (668)
T ss_pred CCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC-ccHHHHHHhccceeecc-C-----CCceehhhHHHH
Confidence 445899999999999999874 24667777778643211 1234444433332 222 1 245667888888
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
++.+++ . ..+++||+++++.+|+.|+++.+.+.++......+++.. + ...... ...|
T Consensus 575 ~~~l~~-----~--~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~---------~-~~~~~~---a~rp--- 631 (668)
T PLN02260 575 SIEMAK-----R--NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLE---------E-QAKVIV---APRS--- 631 (668)
T ss_pred HHHHHH-----h--CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHH---------H-hhhHhh---CCCc---
Confidence 887776 1 225799999999999999999999987411101112111 0 000000 0111
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHH
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~ 352 (586)
...+|++|+++.+|. +. +++|++++++.
T Consensus 632 ---------~~~l~~~k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 632 ---------NNEMDASKLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred ---------cccccHHHHHHhCcc-cc-chHHHHHHHHh
Confidence 226899999998898 65 89999988764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-24 Score=233.24 Aligned_cols=199 Identities=18% Similarity=0.144 Sum_probs=151.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+||||||+||||++++++|+++|+ +|+++|+. +.. ....+++++.+|++|.. +.+++.++|+|
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~--------~~~------~~~~~ve~v~~Dl~d~~-l~~al~~~D~V 64 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH-TVSGIAQH--------PHD------ALDPRVDYVCASLRNPV-LQELAGEADAV 64 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCC--------hhh------cccCCceEEEccCCCHH-HHHHhcCCCEE
Confidence 5899999999999999999999995 99995543 221 01246889999999985 78888999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
||+|+.... . ..++|+.|+.|++++|+++|+ |+||+||. ||. + + .|. .+|
T Consensus 65 IHLAa~~~~--~---~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~--~G~--~------~----------~~~----~aE 114 (699)
T PRK12320 65 IHLAPVDTS--A---PGGVGITGLAHVANAAARAGA-RLLFVSQA--AGR--P------E----------LYR----QAE 114 (699)
T ss_pred EEcCccCcc--c---hhhHHHHHHHHHHHHHHHcCC-eEEEEECC--CCC--C------c----------ccc----HHH
Confidence 999987521 1 125899999999999999998 79999986 321 0 0 121 477
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcc
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
.++.. ++++++++|++++|||+... ++..++....+++++ .++|++|++++++.+++
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI----------~vIyVdDvv~alv~al~----- 175 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI----------RVLHLDDLVRFLVLALN----- 175 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce----------EEEEHHHHHHHHHHHHh-----
Confidence 77765 46899999999999996543 344444444444433 35899999999999887
Q ss_pred cccCCCcEEEEeCCCCcCHHHHHHHHHHHc
Q 007866 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (586)
Q Consensus 245 ~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~ 274 (586)
. .. +++|||++++.+|+.|+++.+....
T Consensus 176 ~-~~-~GiyNIG~~~~~Si~el~~~i~~~~ 203 (699)
T PRK12320 176 T-DR-NGVVDLATPDTTNVVTAWRLLRSVD 203 (699)
T ss_pred C-CC-CCEEEEeCCCeeEHHHHHHHHHHhC
Confidence 2 22 3499999999999999999997763
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-26 Score=224.31 Aligned_cols=214 Identities=23% Similarity=0.217 Sum_probs=133.7
Q ss_pred EEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCC----CCC----CCC-----C---CCCCeEEEEccCCCH
Q 007866 13 VLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESN----SLL----PDS-----L---SSGRAEYHQVDVRDI 75 (586)
Q Consensus 13 VTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~----~~~----~~~-----l---~~~~~~~~~~Dl~d~ 75 (586)
|||||||+|++|+++|++.++ .+|++ +.|..+. ..+ .+. . ...+++++.||+.++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~c--------LvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~ 72 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYC--------LVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQP 72 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEE--------EE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSG
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEE--------EEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEecccccc
Confidence 799999999999999999984 28999 5554321 001 100 0 157899999999873
Q ss_pred ------HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCC----
Q 007866 76 ------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN---- 145 (586)
Q Consensus 76 ------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~---- 145 (586)
+.+.++.+.+|+|||+||..+...+.+...++|+.||+++++.|.+.+.++|+|+||..+.+........
T Consensus 73 ~lGL~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~ 152 (249)
T PF07993_consen 73 NLGLSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYP 152 (249)
T ss_dssp GGG--HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-H
T ss_pred ccCCChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccc
Confidence 5667777889999999999988888889999999999999999998877799999995554433211100
Q ss_pred CCC-CcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------C-cHHHHHHHhcCCCceEEEcC
Q 007866 146 GDE-TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 146 ~~E-~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~-~~~~l~~~~~~g~~~~i~g~ 217 (586)
.+| +........++|..||+.+|++++++.++.|++++++||+.++|.... . ....+...+..|.....+++
T Consensus 153 ~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~ 232 (249)
T PF07993_consen 153 EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGD 232 (249)
T ss_dssp HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB-
T ss_pred cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCC
Confidence 111 111244556799999999999999998766999999999999994322 2 23344455556665556677
Q ss_pred CCccccccchhHHHHHH
Q 007866 218 GENMSDFTYVENVAHAH 234 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai 234 (586)
++...|+++||.+|++|
T Consensus 233 ~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 233 PDARLDLVPVDYVARAI 249 (249)
T ss_dssp --TT--EEEHHHHHHHH
T ss_pred CCceEeEECHHHHHhhC
Confidence 77789999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=252.66 Aligned_cols=264 Identities=20% Similarity=0.148 Sum_probs=190.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC---CcEEEEecCCcccccCCCCCCCC----CC---------CCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSL----LP---------DSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g---~~~V~~~d~~~~~~l~r~~~~~~----~~---------~~l~~~~~~~~~~D 71 (586)
.++|+|||||||+|++++++|++++ .++|++ +.|...... +. ......+++++.+|
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~--------l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gD 1042 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFA--------HVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGD 1042 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEE--------EECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEecc
Confidence 5799999999999999999999887 357888 344322100 00 00012368899999
Q ss_pred CC------CHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC----
Q 007866 72 VR------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH---- 141 (586)
Q Consensus 72 l~------d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~---- 141 (586)
+. +.+.+.++.+++|+|||+|+..+...+.....+.|+.|+.+++++|++.++++++|+||.++|+....
T Consensus 1043 l~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1043 LSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchh
Confidence 96 44666777789999999999886666667777789999999999999999999999999999964210
Q ss_pred ------CCCCCCCCccc---CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHh
Q 007866 142 ------DIHNGDETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLA 206 (586)
Q Consensus 142 ------~~~~~~E~~p~---~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~~~ 206 (586)
+.....|+.+. ...+.+.|+.||+.+|.++..+.+ .|++++++||+++||++..+ .+..++...
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 01123333221 233457899999999999998876 49999999999999986543 223333222
Q ss_pred cCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHH
Q 007866 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286 (586)
Q Consensus 207 ~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~ 286 (586)
.. ....+++...++|++++|+|++++.++... .....+.+||++++..+++.++++.+.+. |.+.+.+..+.|
T Consensus 1202 ~~---~~~~p~~~~~~~~~~Vddva~ai~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~w 1274 (1389)
T TIGR03443 1202 IQ---LGLIPNINNTVNMVPVDHVARVVVAAALNP---PKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDVEIVDYVHW 1274 (1389)
T ss_pred HH---hCCcCCCCCccccccHHHHHHHHHHHHhCC---cccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCCCccCHHHH
Confidence 11 123345566799999999999999887621 01134568999999999999999999764 666555554444
Q ss_pred H
Q 007866 287 V 287 (586)
Q Consensus 287 ~ 287 (586)
.
T Consensus 1275 ~ 1275 (1389)
T TIGR03443 1275 R 1275 (1389)
T ss_pred H
Confidence 3
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=209.84 Aligned_cols=256 Identities=22% Similarity=0.209 Sum_probs=182.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC----CCCC---------CCCCCCCeEEEEccCCC-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN----SLLP---------DSLSSGRAEYHQVDVRD- 74 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~----~~~~---------~~l~~~~~~~~~~Dl~d- 74 (586)
+++|+||||||+|++++++|+.+-+-.|+| +.|..+. ..+. +.....+++.+.+|+..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~c--------LVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~ 72 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVIC--------LVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEP 72 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEE--------EEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccc
Confidence 579999999999999999999986558999 6665441 0111 12345789999999983
Q ss_pred -----HHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCC--C
Q 007866 75 -----ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG--D 147 (586)
Q Consensus 75 -----~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~--~ 147 (586)
...+.++-+.+|.|||+||..+.-.++++....||.||..+++.|...+.|.+.|+||++|+.......... +
T Consensus 73 ~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~ 152 (382)
T COG3320 73 DLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFD 152 (382)
T ss_pred cCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccc
Confidence 466777778899999999999888899999999999999999999999899999999999985433222222 2
Q ss_pred CCccc---CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHH-HhcCCCceEEEcC
Q 007866 148 ETLTC---CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVN-LAKPGWTKFIIGS 217 (586)
Q Consensus 148 E~~p~---~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~-~~~~g~~~~i~g~ 217 (586)
|+.|. ...+.++|++||+.+|.++++..+. |++.+++|||+|-|+..++ ++..++. .+..|. .++
T Consensus 153 ~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~----~P~ 227 (382)
T COG3320 153 EISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGI----APD 227 (382)
T ss_pred cccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCC----CCC
Confidence 22221 3455689999999999999999885 9999999999999986542 2333333 333443 334
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcc------cccCCCcEEE-EeCCCCcCHHHHHHHHHH--HcCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSR------MVSVAGMAFF-ITNLEPIKFWDFLSIILE--GLGYQ 277 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~------~~~~~g~~~n-i~~~~~~t~~ei~~~i~~--~~g~~ 277 (586)
.....+.+.++++++++......+... ++......|+ ..-+..++..++.+.+.+ ..+++
T Consensus 228 ~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~ 296 (382)
T COG3320 228 SEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYP 296 (382)
T ss_pred cccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhhhhccCCc
Confidence 455566677677666655433322100 1222223444 223678999999999887 44444
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=183.83 Aligned_cols=305 Identities=12% Similarity=0.076 Sum_probs=233.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
...+||||||-|.+|..++..|..+ |...|+..|+..+ ..+ -...-.++..|+.|...+++..-
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP-----p~~--------V~~~GPyIy~DILD~K~L~eIVVn~ 109 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP-----PAN--------VTDVGPYIYLDILDQKSLEEIVVNK 109 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC-----chh--------hcccCCchhhhhhccccHHHhhccc
Confidence 4579999999999999999999875 7667888776431 111 11245788899999999998774
Q ss_pred CCCEEEEcccCC--CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 84 GASTVFYVDATD--LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 84 ~~D~Vih~aa~~--~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
..|.+||+.+.. ..+.|-....++|+.|..|+++.|++++. ++..-|+.+++|+.++..+..+-+ ...|.+.||
T Consensus 110 RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdlt---IQRPRTIYG 185 (366)
T KOG2774|consen 110 RIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLT---IQRPRTIYG 185 (366)
T ss_pred ccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCee---eecCceeec
Confidence 489999999976 35777788899999999999999999998 677789999998765432111111 458999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (586)
.||+.+|.+-+.+..++|+++-++|.+.+...... ..+..+..+.++|+. ..+-.++...+.+|.+|+-++++
T Consensus 186 VSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~-tCylrpdtrlpmmy~~dc~~~~~ 264 (366)
T KOG2774|consen 186 VSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKH-TCYLRPDTRLPMMYDTDCMASVI 264 (366)
T ss_pred hhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCc-ccccCCCccCceeehHHHHHHHH
Confidence 99999999999999999999999999998864211 245567778889987 56667788899999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
..+.+. +.+...++||+++ -.+|..|+++.+.+..+. +++.+. +.+.
T Consensus 265 ~~~~a~---~~~lkrr~ynvt~-~sftpee~~~~~~~~~p~----~~i~y~------------------------~~sr- 311 (366)
T KOG2774|consen 265 QLLAAD---SQSLKRRTYNVTG-FSFTPEEIADAIRRVMPG----FEIDYD------------------------ICTR- 311 (366)
T ss_pred HHHhCC---HHHhhhheeeece-eccCHHHHHHHHHhhCCC----ceeecc------------------------cchh-
Confidence 888754 4567778999988 679999999999887642 222111 1111
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhccc
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~~ 362 (586)
..-.-+++..+|.+.+++++.|+-.+.+-.-+.-+++..+++....+
T Consensus 312 q~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~n~~~~~ 358 (366)
T KOG2774|consen 312 QSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKSNLKLLK 358 (366)
T ss_pred hhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcC
Confidence 11223477889999999999998888888877777777777655433
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-22 Score=183.26 Aligned_cols=322 Identities=17% Similarity=0.135 Sum_probs=220.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~-~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
.+..||||-||.=|++|++-|+.+| |+|.++-+.++. +..|-+.--.....-.......+.+|++|...+.+.+. +
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 3578999999999999999999999 799984333221 11111100000001122457889999999999999997 5
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCC---EEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVR---RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvk---r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
++-|+|+|+.+. +-+-|+.+.++...||.+|++|.+.++.. ||..+||+..||- ....|..|.. |..|.+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGk--v~e~PQsE~T--PFyPRS 182 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGK--VQEIPQSETT--PFYPRS 182 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhccc--ccCCCcccCC--CCCCCC
Confidence 799999999982 34457788899999999999999998642 8999999999963 3345778887 459999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCccc---CCCC-CcH-H---HHHHHhc-CCCceEEEcCCCccccccchhH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG---PGDT-QLV-P---LLVNLAK-PGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G---~~~~-~~~-~---~l~~~~~-~g~~~~i~g~g~~~~~~i~v~D 229 (586)
||+.+|..+--++-.|.+.+++-.|- |..|. |+.. .++ . .-+..+. ........|+-+..|||-|..|
T Consensus 183 PYa~aKmy~~WivvNyREAYnmfAcN---GILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~d 259 (376)
T KOG1372|consen 183 PYAAAKMYGYWIVVNYREAYNMFACN---GILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGD 259 (376)
T ss_pred hhHHhhhhheEEEEEhHHhhcceeec---cEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHH
Confidence 99999999887777776667764443 44444 3221 222 2 2222332 2333456788899999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhccc--
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR-- 305 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i--~vp~~~~~~~~~~~~~~~~~~~~~-- 305 (586)
.++|++..++ +....-|.|+.++..|++||.+.--...|.....- .+.. ....-.|..
T Consensus 260 YVEAMW~mLQ-------~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~-----------~~~n~~g~v~V 321 (376)
T KOG1372|consen 260 YVEAMWLMLQ-------QDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDE-----------VGKNDDGVVRV 321 (376)
T ss_pred HHHHHHHHHh-------cCCCCceEEecCCcccHHHHHHHHHHhhCcEEeeccccccc-----------ccccCCceEEE
Confidence 9999999998 22234799999999999999998877777432100 0000 000000000
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
..+..-+.|..++. .--|++|+++.|||+|++++++-+++|++.=.+...
T Consensus 322 ~v~~kYyRPtEVd~----LqGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~ 371 (376)
T KOG1372|consen 322 KVDPKYYRPTEVDT----LQGDASKAKKTLGWKPKVTFPELVKEMVASDIELMK 371 (376)
T ss_pred EecccccCcchhhh----hcCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHh
Confidence 00112233333332 235899999999999999999999999887655443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=191.76 Aligned_cols=229 Identities=18% Similarity=0.162 Sum_probs=161.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCC-HHHHHHHh-c
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRD-ISQIKKVL-E 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d-~~~l~~~l-~ 83 (586)
.+|+|+||||||+||++++++|+++| ++|++ +.|.+++. .... ...+++++.+|+.| .+.+.+.+ .
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~--------~~R~~~~~--~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG-FAVKA--------GVRDVDKA--KTSLPQDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC-CEEEE--------EecCHHHH--HHhcccCCceEEEEeeCCCCHHHHHHHhhc
Confidence 46899999999999999999999999 59998 45543321 0111 12368899999998 56777888 6
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
++|+|||+++..... ++...+++|..++.++++++++.+++|+||+||.++||.... .+.++... ..++...|..+
T Consensus 85 ~~d~vi~~~g~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~--~~~~~~~~-~~~~~~~~~~~ 160 (251)
T PLN00141 85 DSDAVICATGFRRSF-DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG--QILNPAYI-FLNLFGLTLVA 160 (251)
T ss_pred CCCEEEECCCCCcCC-CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcc--cccCcchh-HHHHHHHHHHH
Confidence 899999998865222 233456789999999999999999999999999999864221 11111110 11222334567
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|++++. .|++++++||+.+++.... +.. ...........+++.+|+|+++..+++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~------------~~~-~~~~~~~~~~~~i~~~dvA~~~~~~~~---- 219 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT------------GNI-VMEPEDTLYEGSISRDQVAEVAVEALL---- 219 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC------------ceE-EECCCCccccCcccHHHHHHHHHHHhc----
Confidence 8899988775 5899999999999976422 111 111111122357999999999999987
Q ss_pred ccccCCCcEEEEeCC---CCcCHHHHHHHHHH
Q 007866 244 RMVSVAGMAFFITNL---EPIKFWDFLSIILE 272 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~---~~~t~~ei~~~i~~ 272 (586)
.+...+.++.+.+. ...++.+++..+.+
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 220 -CPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred -ChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 35556678888763 24788888887754
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=197.81 Aligned_cols=227 Identities=19% Similarity=0.130 Sum_probs=164.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.|++|||||+|+||++++++|+++|+ +|.++ .|+++.. .+... ...++.++.+|++|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~-~v~~~--------~r~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGD-RVAAT--------VRRPDALDDLKAR-YGDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE--------eCCHHHHHHHHHh-ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 47899999999999999999999995 88884 4433210 01011 12467899999999998877664
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||.+...
T Consensus 72 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 140 (276)
T PRK06482 72 AALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------- 140 (276)
T ss_pred HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc-----------
Confidence 4799999999762 12345678889999999999997 666788999999975431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCc---ccCCCCC----------cHHHHHHHhcCCCce
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNV---FGPGDTQ----------LVPLLVNLAKPGWTK 212 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v---~G~~~~~----------~~~~l~~~~~~g~~~ 212 (586)
+..+.+.|+.||+..|.+++.++.+ +|++++++||+.+ ||++... ....+.+....+.
T Consensus 141 ----~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (276)
T PRK06482 141 ----AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGS-- 214 (276)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhcc--
Confidence 1234578999999999999887653 6999999999987 6654221 1112222222221
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g 275 (586)
..-+.+++|++++++.+++ ....+..||+++++..+..|.++.+.+.++
T Consensus 215 --------~~~~~d~~~~~~a~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK06482 215 --------FAIPGDPQKMVQAMIASAD------QTPAPRRLTLGSDAYASIRAALSERLAALE 263 (276)
T ss_pred --------CCCCCCHHHHHHHHHHHHc------CCCCCeEEecChHHHHHHHHHHHHHHHHHH
Confidence 1113568999999999887 233456799999988888888888777653
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=181.06 Aligned_cols=182 Identities=32% Similarity=0.360 Sum_probs=144.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (586)
|+|+||||++|+.++++|+++| ++|++ +.|++++. .. ..+++++.+|+.|++++.++++++|+|||
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~--------~~R~~~~~--~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTA--------LVRSPSKA--ED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEE--------EESSGGGH--HH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEE--------EecCchhc--cc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 7999999999999999999999 59999 67776521 11 56899999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH
Q 007866 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (586)
Q Consensus 91 ~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~ 170 (586)
+++.... +...+++++++++++|++|+|++||.++|++.... ..++. ......|...|..+|+.
T Consensus 67 ~~~~~~~----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 67 AAGPPPK----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGL--FSDED----KPIFPEYARDKREAEEA 130 (183)
T ss_dssp CCHSTTT----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSE--EEGGT----CGGGHHHHHHHHHHHHH
T ss_pred hhhhhcc----------cccccccccccccccccccceeeeccccCCCCCcc--ccccc----ccchhhhHHHHHHHHHH
Confidence 9987522 17788999999999999999999999998532221 01111 11125788999999999
Q ss_pred HHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 171 l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
++. .+++++++||+.+||+.... . .....++....++||.+|+|++++.+++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~------------~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS------------Y-RLIKEGGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS------------E-EEESSTSTTSHCEEEHHHHHHHHHHHHH
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc------------e-eEEeccCCCCcCcCCHHHHHHHHHHHhC
Confidence 975 58999999999999986421 1 1122245566799999999999999886
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=188.06 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=158.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++++++|||||+|+||++++++|+++|+ +|++.++ .++.. ...+.+ ...++.++.+|+.|.+++.+++
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL--------NQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC--------ChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999999999995 8888444 32110 000000 1235778999999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHH----HHHHHHHH-HhCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTAC-RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~lleaa-~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+|+... +..+++..+++|+.+ +.++++++ +..+.+++|++||...+.
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~------ 149 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE------ 149 (262)
T ss_pred HHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC------
Confidence 5 3899999999752 223356778899999 77777777 777889999999975431
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc-C--CCceEEEcC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK-P--GWTKFIIGS 217 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~-~--g~~~~i~g~ 217 (586)
...+.+.|+.+|...+.+++.++.+ .+++++++||+.++++......+....... . .....+++.
T Consensus 150 ---------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (262)
T PRK13394 150 ---------ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLG 220 (262)
T ss_pred ---------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhc
Confidence 1234568999999999998877654 589999999999999864322222111000 0 000012233
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+...++|++++|++++++.+++.. .....|+.|+++++..
T Consensus 221 ~~~~~~~~~~~dva~a~~~l~~~~---~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 221 KTVDGVFTTVEDVAQTVLFLSSFP---SAALTGQSFVVSHGWF 260 (262)
T ss_pred CCCCCCCCCHHHHHHHHHHHcCcc---ccCCcCCEEeeCCcee
Confidence 455678999999999999887621 2345688999988754
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=180.18 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=152.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++++|+||||+|+||++++++|+++| ++|+++++......... ...+ .......+.++.+|++|.+++.++++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~--~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADAL--AAEL-NALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHH--HHHH-HhhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 59998544211000000 0000 00012357889999999998887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|+|||+||... ...+++.++++|+.|+.++++++... .-.+++++||... .
T Consensus 81 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~ 147 (249)
T PRK09135 81 AAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA-------------E 147 (249)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-------------c
Confidence 4799999999641 12346788999999999999998642 1235555554321 1
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHH-HHhcCCCceEEEcCCCccccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLV-NLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~~l~-~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
. +..|.+.|+.+|..+|.+++.++.+ .+++++++||+.++||.+...++... .....+.+. ..+.+
T Consensus 148 ~--~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 216 (249)
T PRK09135 148 R--PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTPL---------KRIGT 216 (249)
T ss_pred C--CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCCc---------CCCcC
Confidence 1 3467789999999999999988654 36999999999999997653223222 222222221 12234
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
++|+|+++..++.. .+...|++||+++++.++
T Consensus 217 ~~d~a~~~~~~~~~----~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 217 PEDIAEAVRFLLAD----ASFITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHHHHcCc----cccccCcEEEECCCeecc
Confidence 89999999655541 234578999999987654
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=192.54 Aligned_cols=230 Identities=20% Similarity=0.134 Sum_probs=161.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCC-----------CCCCCCeEEEEccCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPD-----------SLSSGRAEYHQVDVR 73 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~-----------~l~~~~~~~~~~Dl~ 73 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++ ..++.. +.. .....++.++.+|+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~R--------n~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVR--------SAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeC--------CHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 356899999999999999999999999 49998444 322100 000 001235889999999
Q ss_pred CHHHHHHHhcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc
Q 007866 74 DISQIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
|.+++.+++.++|+|||++|... ...++...+++|+.|+.|++++|+++|++|||++||.+++..+. .+.
T Consensus 149 D~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~------p~~--- 219 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGF------PAA--- 219 (576)
T ss_pred CHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCc------ccc---
Confidence 99999999999999999998752 22345677899999999999999999999999999987631110 111
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
.......|...|..+|+.+.. .|++++++|||.++++.+... ..+. +....++......+..+|+|+
T Consensus 220 ~~~sk~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~--------~t~~-v~~~~~d~~~gr~isreDVA~ 286 (576)
T PLN03209 220 ILNLFWGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK--------ETHN-LTLSEEDTLFGGQVSNLQVAE 286 (576)
T ss_pred chhhHHHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc--------cccc-eeeccccccCCCccCHHHHHH
Confidence 112345688889999999876 699999999999998754321 0111 111111122223578899999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCC---cCHHHHHHHH
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEP---IKFWDFLSII 270 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~---~t~~ei~~~i 270 (586)
+++.++.. .....+++|.+.++.. ..+.++++.+
T Consensus 287 vVvfLasd----~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 287 LMACMAKN----RRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHcC----chhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 99987761 1236688999988653 3444444443
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-20 Score=189.33 Aligned_cols=228 Identities=14% Similarity=0.029 Sum_probs=160.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
++++|+||||+|+||++++++|+++| ++|+++++ +++.. ..... ....+..+.+|+.|.+++.++++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r--------~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG-DRVVATAR--------DTATLADLAEK-YGDRLLPLALDVTDRAAVFAAVETA 71 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHh-ccCCeeEEEccCCCHHHHHHHHHHH
Confidence 45799999999999999999999999 48998443 32210 00001 12357788999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||.+.+..
T Consensus 72 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~--------- 142 (275)
T PRK08263 72 VEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA--------- 142 (275)
T ss_pred HHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC---------
Confidence 4799999999762 22457888999999998887775 5667789999999877631
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC------c---HHHHHHHhcCCCceEEE
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------L---VPLLVNLAKPGWTKFII 215 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~------~---~~~l~~~~~~g~~~~i~ 215 (586)
....+.|+.+|+..|.+.+.++.+ +|++++++||+.+..+.... . ...+....
T Consensus 143 ------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------- 207 (275)
T PRK08263 143 ------FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREEL--------- 207 (275)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHH---------
Confidence 123467999999999888777543 68999999999887654311 0 01111111
Q ss_pred cCCCccccc-cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHH
Q 007866 216 GSGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (586)
Q Consensus 216 g~g~~~~~~-i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~ 273 (586)
.+......+ ++.+|+|++++.+++ .+...++.++.++++.+++.++.+.+.+.
T Consensus 208 ~~~~~~~~~~~~p~dva~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (275)
T PRK08263 208 AEQWSERSVDGDPEAAAEALLKLVD-----AENPPLRLFLGSGVLDLAKADYERRLATW 261 (275)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHc-----CCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence 111122345 889999999999988 34455554444445678899988888774
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=178.66 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCC--CCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDS--LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~--l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+++|+|+||||+|+||++++++|+++|+ +|.+ ..|..... ..... ....++.++.+|+.|.+++.++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 74 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA-DVVV--------HYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAA 74 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEE--------EeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHH
Confidence 4568999999999999999999999996 7766 23322110 00000 0124578999999999988877
Q ss_pred hc-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ++|+|||+||.... ..++...+++|+.++.++++++ ++.+++++|++||...+..
T Consensus 75 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~----- 149 (249)
T PRK12825 75 VAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG----- 149 (249)
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC-----
Confidence 64 57999999996521 2235778899999999999887 4667899999999887631
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+...|+.+|...|.+++.++.+ .|++++++||+.++|+............. .. ...
T Consensus 150 ----------~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~---~~------~~~ 210 (249)
T PRK12825 150 ----------WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREAK---DA------ETP 210 (249)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHhh---hc------cCC
Confidence 134568999999999988877543 58999999999999986543222111110 00 111
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
...+++.+|+++++..+++.. .....|+.|+++++.++
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 211 LGRSGTPEDIARAVAFLCSDA---SDYITGQVIEVTGGVDV 248 (249)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCcCCCEEEeCCCEee
Confidence 233899999999999888621 23467999999987643
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=183.71 Aligned_cols=225 Identities=23% Similarity=0.228 Sum_probs=162.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (586)
|+|+||||.+|+++++.|++.+ ++|++ +.|.+... ....+...+++.+.+|+.|.+++.++|+|+|+||.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~--------l~R~~~~~-~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRA--------LVRDPSSD-RAQQLQALGAEVVEADYDDPESLVAALKGVDAVFS 70 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEE--------EESSSHHH-HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEE--------EEeccchh-hhhhhhcccceEeecccCCHHHHHHHHcCCceEEe
Confidence 7999999999999999999988 59999 67765321 11223345788999999999999999999999998
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH
Q 007866 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL 170 (586)
Q Consensus 91 ~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~ 170 (586)
+.+... ........++++||+++||++||+.|....+ ++.. ...|..+.-..|...|+.
T Consensus 71 ~~~~~~---------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~----------~~~~--~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 71 VTPPSH---------PSELEQQKNLIDAAKAAGVKHFVPSSFGADY----------DESS--GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp ESSCSC---------CCHHHHHHHHHHHHHHHT-SEEEESEESSGT----------TTTT--TSTTHHHHHHHHHHHHHH
T ss_pred ecCcch---------hhhhhhhhhHHHhhhccccceEEEEEecccc----------cccc--cccccchhhhhhhhhhhh
Confidence 887642 1124556789999999999999986655443 1111 123445566789999999
Q ss_pred HHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCC-CceEEEcCCCcccccc-chhHHHHHHHHHHHHhhcccccC
Q 007866 171 VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG-WTKFIIGSGENMSDFT-YVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 171 l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i-~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
+++ .+++++++||+..+........+ ....... ....++++++....++ ..+|+++++..++.. |..
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~-----p~~ 198 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLPPFAP--VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLD-----PEK 198 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHTTTHH--TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHS-----GGG
T ss_pred hhh----ccccceeccccchhhhhhhhhcc--cccccccceEEEEccCCCccccccccHHHHHHHHHHHHcC-----hHH
Confidence 988 49999999999877532111111 0112222 2457778888777775 999999999999883 333
Q ss_pred --CCcEEEEeCCCCcCHHHHHHHHHHHcCCCC
Q 007866 249 --AGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (586)
Q Consensus 249 --~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~ 278 (586)
.|+.+++++ +.+|+.|+++.+.+.+|++.
T Consensus 199 ~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v 229 (233)
T PF05368_consen 199 HNNGKTIFLAG-ETLTYNEIAAILSKVLGKKV 229 (233)
T ss_dssp TTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEE
T ss_pred hcCCEEEEeCC-CCCCHHHHHHHHHHHHCCcc
Confidence 467777766 78999999999999999864
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-20 Score=182.15 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=154.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL-- 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l-- 82 (586)
++++|||||+|+||+++++.|+++|+ +|+++++ ++... .+...+ ...++..+.+|+.|.+++.+++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDL--------GEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAA 71 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeC--------CHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999995 9999544 32210 000000 1235788999999998665444
Q ss_pred -----cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 83 -----EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 -----~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.+.|+|||+|+... +..+.+..++.|+.|+.++++++ ++.+++++||+||...+..
T Consensus 72 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~-------- 143 (255)
T TIGR01963 72 AAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA-------- 143 (255)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC--------
Confidence 45799999998752 12234567789999988888776 5667889999999876531
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH-hcCCCce--EEEcCCCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-AKPGWTK--FIIGSGEN 220 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~-~~~g~~~--~i~g~g~~ 220 (586)
......|+.+|...|.+++.++.+ .+++++++||+.++|+.....++..... ....... .....+.+
T Consensus 144 -------~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (255)
T TIGR01963 144 -------SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKTRGIPEEQVIREVMLPGQP 216 (255)
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcccCCCchHHHHHHHHccCc
Confidence 122467999999999998876543 4899999999999987532211111100 0000000 01122446
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.++++|++|+|++++.+++.. .....|+.|+++++..
T Consensus 217 ~~~~~~~~d~a~~~~~~~~~~---~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 217 TKRFVTVDEVAETALFLASDA---AAGITGQAIVLDGGWT 253 (255)
T ss_pred cccCcCHHHHHHHHHHHcCcc---ccCccceEEEEcCccc
Confidence 678999999999999888621 1244688999988654
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-20 Score=182.62 Aligned_cols=224 Identities=17% Similarity=0.179 Sum_probs=153.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++|+||||+|+||++++++|+++| ++|+++++ .+++. .....+ ...++..+.+|+.|.+++.++++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-AKVVIADL--------NDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 59998444 32210 000001 13467889999999998887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHH----HHHHHHHHHhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+|+... +..+.+..+++|+.+ +.++++++++.+.+++|++||...+.
T Consensus 74 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~-------- 145 (258)
T PRK12429 74 YAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV-------- 145 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------
Confidence 5899999998651 122345677889999 45555555667888999999986652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce-----EEEcC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-----FIIGS 217 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~-----~i~g~ 217 (586)
+..+.+.|+.+|...+.+.+.++. ..++++.++||+.+++|.....++..... .+... ..+..
T Consensus 146 -------~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (258)
T PRK12429 146 -------GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLAKE--RGISEEEVLEDVLLP 216 (258)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhccc--cCCChHHHHHHHHhc
Confidence 123457899999999988876643 25899999999999987643222211100 01100 01122
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+.+++++|+|+++..++... .....|+.|+++++.
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFA---AKGVTGQAWVVDGGW 255 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCcc---ccCccCCeEEeCCCE
Confidence 334467999999999998887621 234568899998763
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=173.60 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=157.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+++|+|+||||+|++|++++++|+++| ++|+++ .|++.+. .....+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADG-AEVIVV--------DICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999999 599994 4432210 000001 1235788999999999988877
Q ss_pred c-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+++.... ..+++..+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 75 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~------ 148 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV------ 148 (251)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc------
Confidence 5 58999999987622 23457789999999999998874 456789999999876510
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHH-HHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL-VNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l-~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.+|...|.+++.++.+ .|++++++||+.++|+......... ......+.+
T Consensus 149 --------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~--------- 211 (251)
T PRK12826 149 --------GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP--------- 211 (251)
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCC---------
Confidence 1234568999999999999887543 5899999999999998654322211 222222221
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+++++|+|.++..++... .....|+.|+++++.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 212 LGRLGEPEDIAAAVLFLASDE---ARYITGQTLPVDGGA 247 (251)
T ss_pred CCCCcCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 125789999999999876521 123578999998765
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=180.21 Aligned_cols=228 Identities=15% Similarity=0.156 Sum_probs=159.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++++||||+|+||+++++.|+++| ++|++.|+.. ... .....+ ..++..+.+|+.|.+++.++++
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKP--------ARARLAALEI-GPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCH--------HHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999999 5999855432 210 000011 2357889999999998887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCC-----CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~g-----vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+|+... ...+++..+++|+.++.++++++.... -.++|++||.....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 145 (257)
T PRK07067 74 AVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR-------- 145 (257)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC--------
Confidence 4799999999651 124567789999999999999886431 24799999964321
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHh--cCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLA--KPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~--~~g~~~~i~g~g~~ 220 (586)
+..+...|+.+|...+.+.+.++. .+|++++++||+.++++........+.... ..+......+++.+
T Consensus 146 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (257)
T PRK07067 146 -------GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVP 218 (257)
T ss_pred -------CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCC
Confidence 123567899999999999887754 468999999999999975322111110000 00111112334456
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
...+.+.+|+|+++..++.. ......|++|++++++.+
T Consensus 219 ~~~~~~~~dva~~~~~l~s~---~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 219 LGRMGVPDDLTGMALFLASA---DADYIVAQTYNVDGGNWM 256 (257)
T ss_pred CCCccCHHHHHHHHHHHhCc---ccccccCcEEeecCCEeC
Confidence 67899999999999987752 123467899999988654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=171.56 Aligned_cols=217 Identities=19% Similarity=0.154 Sum_probs=156.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++|+||||+|++|++++++|+++|+ +|.+ +.|++.+.. ....+ ...++.++.+|+.|++++.++++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~--------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVI--------YDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE 74 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEE--------EeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 458999999999999999999999995 8888 444432110 00001 12457888999999988877765
Q ss_pred C-------CCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 G-------ASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ~-------~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ +|+|||++|.... ..++...++.|+.++.++++++. +.+++++|++||.....
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~-------- 146 (246)
T PRK05653 75 AAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT-------- 146 (246)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc--------
Confidence 3 6999999987522 12346778999999999998884 56788999999986532
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|...|.+.+.++++ .+++++++||+.++|+................ ....
T Consensus 147 -------~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~---------~~~~ 210 (246)
T PRK05653 147 -------GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKE---------IPLG 210 (246)
T ss_pred -------CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHhc---------CCCC
Confidence 1234567999999998888877542 58999999999999987543222222222211 1225
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+++++|+++++..++... .....|+.|+++++.
T Consensus 211 ~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 211 RLGQPEEVANAVAFLASDA---ASYITGQVIPVNGGM 244 (246)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCccCCEEEeCCCe
Confidence 6788999999999887521 235578999999875
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=174.36 Aligned_cols=221 Identities=13% Similarity=0.052 Sum_probs=151.6
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
|+...+.+++++||||+|+||++++++|+++| ++|+++|+.. ........+ ...++.++.+|+.|.+++
T Consensus 1 ~~~~~~~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 1 MMNQRFAGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSE--------LVHEVAAELRAAGGEALALTADLETYAGA 71 (260)
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCch--------HHHHHHHHHHhcCCeEEEEEEeCCCHHHH
Confidence 44444567899999999999999999999999 5898855432 100000001 123577899999998887
Q ss_pred HHHhc-------CCCEEEEcccCC--------CCCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccC
Q 007866 79 KKVLE-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDG 139 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~ 139 (586)
.++++ ++|+|||+||.. ....++...+++|+.++.++++ .+++.+..++|++||...++.
T Consensus 72 ~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~- 150 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI- 150 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-
Confidence 76664 579999999853 1233456677889888775554 444566779999999876521
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-------------CcHHHHH
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-------------QLVPLLV 203 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-------------~~~~~l~ 203 (586)
+..+|+.+|+..|.+.+.++.+ +|+++++++|+.+++|... ...+.+.
T Consensus 151 ----------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 214 (260)
T PRK12823 151 ----------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIV 214 (260)
T ss_pred ----------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHH
Confidence 2346999999999999887643 4899999999999987310 1122233
Q ss_pred HHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 204 ~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+....+.+ ..-+.+++|+|++++.++.. ......|+.+++.+++
T Consensus 215 ~~~~~~~~---------~~~~~~~~dva~~~~~l~s~---~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 215 DQTLDSSL---------MKRYGTIDEQVAAILFLASD---EASYITGTVLPVGGGD 258 (260)
T ss_pred HHHhccCC---------cccCCCHHHHHHHHHHHcCc---ccccccCcEEeecCCC
Confidence 33333222 12345689999999877641 1234678899998765
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-19 Score=177.68 Aligned_cols=203 Identities=17% Similarity=0.091 Sum_probs=141.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++++|+||||+|+||++++++|+++|+ +|++++ |++++..........++..+.+|+.|.+++.++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~--------r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTV--------RSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEe--------CCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 468899999999999999999999995 899944 43321000000112357889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+.+..+++|+.|+.++++++ ++.+.+++|++||.+.+..
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~---------- 143 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLIT---------- 143 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCC----------
Confidence 4799999999752 12234667899999999999985 3456679999999876521
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-------cHHHHHH---HhcCCCceEEE
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVN---LAKPGWTKFII 215 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-------~~~~l~~---~~~~g~~~~i~ 215 (586)
..+.+.|+.+|+..|.+++.++.+ .|++++++||+.+.++.... ....... ...... ..
T Consensus 144 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 215 (277)
T PRK06180 144 -----MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR---EA 215 (277)
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH---Hh
Confidence 134678999999999988877643 58999999999998763221 1111111 110000 00
Q ss_pred cCCCccccccchhHHHHHHHHHHH
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.....+..++|+|++++.+++
T Consensus 216 ---~~~~~~~~~~dva~~~~~~l~ 236 (277)
T PRK06180 216 ---KSGKQPGDPAKAAQAILAAVE 236 (277)
T ss_pred ---hccCCCCCHHHHHHHHHHHHc
Confidence 111235679999999999887
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=172.85 Aligned_cols=224 Identities=15% Similarity=0.118 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+|+||++++++|+++|+ +|+++ .|+.... .....+ ...++..+.+|+.|++++.++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~--------~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVN--------YRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEE--------eCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3568999999999999999999999994 88884 3322110 000001 123578899999999988776
Q ss_pred hc-------CCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 82 LE-------GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++ ++|+|||+|+.. ....++...+++|+.++.++++++.+. ...++|++||...... +..+..
T Consensus 75 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------~~~~~~- 147 (248)
T PRK07806 75 MDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFI------PTVKTM- 147 (248)
T ss_pred HHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcC------ccccCC-
Confidence 64 589999999865 234456778899999999999999865 2358999999654311 111111
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
...++|+.||..+|.+++.++. ..|+++++++|+.+-++... .+......+. ..........+++++
T Consensus 148 ---~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~ 217 (248)
T PRK07806 148 ---PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----TLLNRLNPGA---IEARREAAGKLYTVS 217 (248)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh----hhhccCCHHH---HHHHHhhhcccCCHH
Confidence 2256899999999999988753 36899999999877665321 1111000000 000001123689999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
|+|++++.+++ .+...|++|++++++-
T Consensus 218 dva~~~~~l~~-----~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 218 EFAAEVARAVT-----APVPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHHHhh-----ccccCccEEEecCccc
Confidence 99999999998 3567899999999764
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=170.22 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=155.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|+++||||+|+||+++++.|.++| ++|+++++. .... .....+ ...++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG-FDLAINDRP--------DDEELAATQQELRALGVEVIFFPADVADLSAHEAMLD 72 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecC--------chhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 4789999999999999999999999 588885432 1110 000000 12367899999999988776654
Q ss_pred -------CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHHhC-----C-----CCEEEEecCccccc
Q 007866 84 -------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC-----K-----VRRLVYNSTADVVF 137 (586)
Q Consensus 84 -------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~~~-----g-----vkr~I~~SS~~vyg 137 (586)
.+|+|||+||... ...+++..+++|+.++.++++++... + ++++|++||...+.
T Consensus 73 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 152 (256)
T PRK12745 73 AAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM 152 (256)
T ss_pred HHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc
Confidence 5799999998641 12446778999999999998887542 1 56899999987652
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
+..+.+.|+.+|...|.+++.++.+ +|++++++||+.+.++...............+.
T Consensus 153 ---------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~---- 213 (256)
T PRK12745 153 ---------------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGL---- 213 (256)
T ss_pred ---------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcC----
Confidence 1234568999999999999988743 689999999999998754433232222222211
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.....+.+.+|+++++..++.. ..+...|+.|++.++..
T Consensus 214 ----~~~~~~~~~~d~a~~i~~l~~~---~~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 214 ----VPMPRWGEPEDVARAVAALASG---DLPYSTGQAIHVDGGLS 252 (256)
T ss_pred ----CCcCCCcCHHHHHHHHHHHhCC---cccccCCCEEEECCCee
Confidence 1234577999999999877651 12345789999988754
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=175.57 Aligned_cols=228 Identities=16% Similarity=0.102 Sum_probs=163.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
+++++||||+|+||++++++|+++| ++|+++++ ++.+. .+...+...++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG-DRVLALDI--------DAAALAAFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999 58999543 32210 01111123467889999999999887775
Q ss_pred ----CCCEEEEcccCCCC----C---CChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDLN----T---DDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~~----~---~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||++|.... . ......+++|+.++.++++++ .+.+.+++|++||...+..
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 142 (257)
T PRK07074 73 AERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA---------- 142 (257)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC----------
Confidence 47999999997521 1 223455779999999998877 3456678999999654310
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCCccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
.....|+.+|...|.+++.++.+ +|+++.++||+.+.++..... .+.+...... .....
T Consensus 143 ------~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~ 207 (257)
T PRK07074 143 ------LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK---------WYPLQ 207 (257)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh---------cCCCC
Confidence 11236999999999999888643 479999999999988753211 1122222211 12346
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHH
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~ 272 (586)
+|+|++|++++++.++... .....|+.+++.++......|+.+.+.+
T Consensus 208 ~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 208 DFATPDDVANAVLFLASPA---ARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CCCCHHHHHHHHHHHcCch---hcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 8999999999999888511 2345688999999998999999888754
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=177.66 Aligned_cols=220 Identities=15% Similarity=0.051 Sum_probs=151.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
++++++||||+|++|+++++.|+++| ++|++++ |+++.. .........++.++.+|+.|++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~- 71 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKG-YLVIATM--------RNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN- 71 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEe--------CCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-
Confidence 45789999999999999999999999 5898844 332210 00000112468899999999988765
Q ss_pred h-------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 82 L-------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l-------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ .++|+|||+|+... +..+++..+++|+.++.++++++ ++.+.+++|++||.+.+.
T Consensus 72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~------ 145 (280)
T PRK06914 72 FQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV------ 145 (280)
T ss_pred HHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC------
Confidence 3 24799999998752 12345667889999998888875 566778999999975532
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcH-------------HHHHHHhc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------------PLLVNLAK 207 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~-------------~~l~~~~~ 207 (586)
+..+...|+.+|...|.+++.++ ..+|++++++|||.+.++...... ........
T Consensus 146 ---------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (280)
T PRK06914 146 ---------GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQ 216 (280)
T ss_pred ---------CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHH
Confidence 12345789999999999988875 346999999999999877321100 00111110
Q ss_pred CCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHH
Q 007866 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (586)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ 264 (586)
. .. ......+++++|+|++++.+++ ++.. +..|+++++..+++.
T Consensus 217 ~-----~~--~~~~~~~~~~~dva~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 217 K-----HI--NSGSDTFGNPIDVANLIVEIAE-----SKRP-KLRYPIGKGVKLMIL 260 (280)
T ss_pred H-----HH--hhhhhccCCHHHHHHHHHHHHc-----CCCC-CcccccCCchHHHHH
Confidence 0 00 0122457889999999999988 2333 357888876655543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=172.30 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=164.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||+++++.|+++|+ +|+++++.... . + .....+.......++..+.+|+.|.+++.++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~-~-~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDK-L-A-AAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHH-H-H-HHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999994 99985443210 0 0 000000000012467888999999998887775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... +..++..++++|+.++.++++++.+. +..+++++||...+.
T Consensus 81 ~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~--------- 151 (276)
T PRK05875 81 TAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN--------- 151 (276)
T ss_pred HHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC---------
Confidence 5899999998531 12235678899999999999877553 445899999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+.++|+.+|...|.+++.++.+ .+++++++||+.+.++....... ........ ....
T Consensus 152 ------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 216 (276)
T PRK05875 152 ------THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRA---------CTPL 216 (276)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHc---------CCCC
Confidence 1234578999999999999887643 47999999999987664321111 11111111 1123
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc----CHHHHHHHHHHHcC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI----KFWDFLSIILEGLG 275 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~----t~~ei~~~i~~~~g 275 (586)
..+.+++|+|+++..+++.. .....|+++++++++.+ +..|+++.+.+..|
T Consensus 217 ~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 217 PRVGEVEDVANLAMFLLSDA---ASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CCCcCHHHHHHHHHHHcCch---hcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 34678999999999887621 12345899999998765 67777776665443
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=176.02 Aligned_cols=258 Identities=18% Similarity=0.165 Sum_probs=185.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC--CcEEEEecCCcccccCCCCCCCCC----CCC--------------CCCCCeE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLL----PDS--------------LSSGRAE 66 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g--~~~V~~~d~~~~~~l~r~~~~~~~----~~~--------------l~~~~~~ 66 (586)
.+++|+|||||||+|..+++.|++.- ..+++. +.|....... ..+ -...++.
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYl--------LiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~ 82 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYL--------LIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVV 82 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcCcCcceEEE--------EEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecce
Confidence 47899999999999999999999863 235666 5554432110 000 0125678
Q ss_pred EEEccCCCH------HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccC
Q 007866 67 YHQVDVRDI------SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDG 139 (586)
Q Consensus 67 ~~~~Dl~d~------~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~ 139 (586)
.+.||+.++ +.+....+.+|+|||+||...+....+....+|..||+++++.|++. +.+-++|+||+.+. ..
T Consensus 83 pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n-~~ 161 (467)
T KOG1221|consen 83 PIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN-CN 161 (467)
T ss_pred eccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee-cc
Confidence 899999863 45556678899999999999888888999999999999999999998 57899999999875 11
Q ss_pred C----CCCCCC------------CCCcc----------cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccC
Q 007866 140 S----HDIHNG------------DETLT----------CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193 (586)
Q Consensus 140 ~----~~~~~~------------~E~~p----------~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~ 193 (586)
. ....+. +|+.. ......+.|.-+|+.+|.++.++++ ++|.+|+||+.|...
T Consensus 162 ~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st 239 (467)
T KOG1221|consen 162 VGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITST 239 (467)
T ss_pred cccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceecc
Confidence 1 000111 11110 0124467899999999999999874 899999999999986
Q ss_pred CCCCcHH---------HHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC--CCcC
Q 007866 194 GDTQLVP---------LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIK 262 (586)
Q Consensus 194 ~~~~~~~---------~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~--~~~t 262 (586)
...++-+ .++-...+|..-....|.+...|+|.+|.++.+++.+.-.-....++..-.+||++++ .+++
T Consensus 240 ~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t 319 (467)
T KOG1221|consen 240 YKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVT 319 (467)
T ss_pred ccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCccc
Confidence 5433222 1222334566556778899999999999999999966532111112123459999986 4799
Q ss_pred HHHHHHHHHHHcC
Q 007866 263 FWDFLSIILEGLG 275 (586)
Q Consensus 263 ~~ei~~~i~~~~g 275 (586)
|.++.+...+...
T Consensus 320 ~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 320 WGDFIELALRYFE 332 (467)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988775
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=170.60 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=155.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.++++++||||+|+||++++++|+++| ++|+++++. .... .....+ ...+...+.+|+.|.+++.+++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADIN--------AEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999 489995443 2110 000011 1235678899999998887666
Q ss_pred c-------CCCEEEEcccCCC----------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~ 141 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++... +.+++|++||...|+
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---- 150 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL---- 150 (250)
T ss_pred HHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC----
Confidence 4 5799999999741 12345677899999999999988753 456999999987762
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~ 217 (586)
+.++|+.+|+..|.+++.++++ .|+++++++||.+..+...... ..+.+...++.+.
T Consensus 151 --------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~----- 211 (250)
T PRK07774 151 --------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPL----- 211 (250)
T ss_pred --------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCC-----
Confidence 3467999999999999888654 4799999999998877644322 2233333333221
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+++|+|++++.++... .+...|++||+++++.+
T Consensus 212 ----~~~~~~~d~a~~~~~~~~~~---~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 212 ----SRMGTPEDLVGMCLFLLSDE---ASWITGQIFNVDGGQII 248 (250)
T ss_pred ----CCCcCHHHHHHHHHHHhChh---hhCcCCCEEEECCCeec
Confidence 12456899999999887621 12357889999987654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=173.68 Aligned_cols=228 Identities=16% Similarity=0.123 Sum_probs=153.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
++++++|||||+|+||++++++|+++|+ +|++++ |+.+.. .+.......++..+.+|+.|++++.++++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCD--------VSEAALAATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEe--------CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 4568999999999999999999999995 899844 432210 00011111256889999999998877764
Q ss_pred ------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHH----hCCC-CEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~----~~gv-kr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+|+.... ..+++..+++|+.++.++++++. ..+. ++++++||.+.+.
T Consensus 80 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~------- 152 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL------- 152 (264)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-------
Confidence 68999999997611 22457889999999999998874 3444 5788888765421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE--EEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF--IIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~--i~g~g~ 219 (586)
...+...|+.+|...|.+++.++.+ .+++++++||+.++|+......+........+.... ......
T Consensus 153 --------~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (264)
T PRK12829 153 --------GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKI 224 (264)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcC
Confidence 1123457999999999998887643 489999999999999864322221111111100000 000011
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
....+++++|+|+++..++.. ......|+.|+++++..
T Consensus 225 ~~~~~~~~~d~a~~~~~l~~~---~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 225 SLGRMVEPEDIAATALFLASP---AARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCCCCHHHHHHHHHHHcCc---cccCccCcEEEeCCCcc
Confidence 234689999999999877641 12345788999998753
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=172.66 Aligned_cols=222 Identities=15% Similarity=0.121 Sum_probs=157.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC--CCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS--SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~--~~~~~~~~~Dl~d~~~l~~~ 81 (586)
...+++++||||+|+||++++++|+++| ++|++.++. +++. .....+. ..++..+.+|+.|.+++.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRD--------PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCC--------HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHH
Confidence 3457899999999999999999999999 599985443 2210 0000111 23478899999999988887
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ..|+|||+||... .....+..+++|+.++.++++++.+. +.+++|++||.....
T Consensus 78 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------ 151 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------ 151 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------
Confidence 75 3799999999752 12234677889999999999988653 577999999975431
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
+..+.+.|+.+|...|.+.+.++. .+|+++.++||+.+.++...... +.+...+.+..
T Consensus 152 ---------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~-------- 214 (255)
T PRK07523 152 ---------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRT-------- 214 (255)
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcC--------
Confidence 123457899999999999888864 46899999999999987532111 12222222221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
....+.+++|+|.+++.++.. ......|+.+++.++..++
T Consensus 215 -~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 215 -PAGRWGKVEELVGACVFLASD---ASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred -CCCCCcCHHHHHHHHHHHcCc---hhcCccCcEEEECCCeecc
Confidence 223467899999999887751 1234568899998876544
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=167.76 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++++|||||+|+||++++++|+++| ++|++++ |++.+. .....+...+.+.+.+|+.|.+++.++++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARG-ARVALIG--------RGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEe--------CChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHH
Confidence 346899999999999999999999999 5899954 432210 00011122356788899999988877765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+++... ...++...+++|+.++.++++++. +.+++++|++||.+.++.
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 147 (239)
T PRK12828 76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA-------- 147 (239)
T ss_pred HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC--------
Confidence 5899999998652 122345678899999999988874 457889999999987632
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.+|...+.+++.++. ..++++.++||+.++++..... .+ ......
T Consensus 148 -------~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~---------------~~--~~~~~~ 203 (239)
T PRK12828 148 -------GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD---------------MP--DADFSR 203 (239)
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc---------------CC--chhhhc
Confidence 13456799999998888877654 2589999999999998732110 00 011234
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
|++++|+|+++..+++.. .+...|+.+.+.+++.
T Consensus 204 ~~~~~dva~~~~~~l~~~---~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDE---AQAITGASIPVDGGVA 237 (239)
T ss_pred CCCHHHHHHHHHHHhCcc---cccccceEEEecCCEe
Confidence 899999999998887621 1245688989988753
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=169.51 Aligned_cols=210 Identities=17% Similarity=0.043 Sum_probs=144.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+++++++||||+|+||++++++|.++| ++|.+.|+..+. +. .....+ ...++..+.+|+.|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~-l~------~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPG-LR------QAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH------HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 567899999999999999999999999 588885543210 00 000011 12357788999999998887764
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCC-CCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~g-vkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... +..+++..+++|+.++.++.+++. +.+ ..++|++||...+.
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~------- 148 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV------- 148 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-------
Confidence 3799999999741 223456778999999999998874 344 46899999987662
Q ss_pred CCCCCcccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~----~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+.+.|+.+|.. +|.+..++.. .|+++++++|+.+.++......................++...
T Consensus 149 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~-~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T PRK05876 149 --------PNAGLGAYGVAKYGVVGLAETLAREVTA-DGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPL 219 (275)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhh-cCcEEEEEEeCccccccccchhhhcCccccccccccccccccc
Confidence 22456789999997 5555555543 5899999999999876432211100000001111123344445
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
.+++++++|+|++++.+++
T Consensus 220 ~~~~~~~~dva~~~~~ai~ 238 (275)
T PRK05876 220 QDDNLGVDDIAQLTADAIL 238 (275)
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 6789999999999999987
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-18 Score=172.04 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=147.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||+|+||+++++.|+++| ++|.+.++ +.... .....+ ...++..+.+|+.|.+++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAG-FPVALGAR--------RVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 45799999999999999999999999 48888443 22110 000000 12357788999999999887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... +..++...+++|+.++.++++++. +.+..++|++||...|..
T Consensus 80 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~------- 152 (274)
T PRK07775 80 QAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQ------- 152 (274)
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCC-------
Confidence 4799999999752 123455667999999999988865 345568999999877631
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc----HHHHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL----VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~----~~~l~~~~~~g~~~~i~g~g 218 (586)
..+.+.|+.+|...|.+++.++.+ .|++++++|||.+.++..... ...+...... ++ +
T Consensus 153 --------~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~ 217 (274)
T PRK07775 153 --------RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-Q 217 (274)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-c
Confidence 123567999999999999888643 489999999998765422111 1111111111 01 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEe
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~ 256 (586)
.....++|++|+|++++.+++ .+ ..+.+||+.
T Consensus 218 ~~~~~~~~~~dva~a~~~~~~-----~~-~~~~~~~~~ 249 (274)
T PRK07775 218 ARHDYFLRASDLARAITFVAE-----TP-RGAHVVNME 249 (274)
T ss_pred cccccccCHHHHHHHHHHHhc-----CC-CCCCeeEEe
Confidence 223568999999999998887 22 345678886
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=173.62 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=156.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.++++|||||+|+||++++++|+++| ++|+++|+.... +.+... .+.. ...++..+.+|+.|.+++.++++
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~~~~--~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDA-LDRAVA--ELRA--QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHH-HHHHHH--HHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 589986553210 000000 0000 12357789999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCCC------CEEEEecCccccccCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKV------RRLVYNSTADVVFDGSH 141 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~gv------kr~I~~SS~~vyg~~~~ 141 (586)
++|+|||+||... +..+++..+++|+.|+.+++++ +.+.+. .++|++||.+.+..
T Consensus 78 ~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--- 154 (287)
T PRK06194 78 LERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA--- 154 (287)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC---
Confidence 3799999999862 1234566789999999997776 444443 58999999877632
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-----CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~-----gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g 216 (586)
..+..+|+.+|...|.+.+.++.+. ++++..+.|+.+..+ +.....+++..+.+
T Consensus 155 ------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~---------~~~~~~~~~~~~~~ 213 (287)
T PRK06194 155 ------------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG---------IWQSERNRPADLAN 213 (287)
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc---------cccccccCchhccc
Confidence 1234679999999999998876533 466666777655432 11222344556778
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~ 278 (586)
++.+.++|++++|.+.+.... + .++..|+++.+.+.+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~------------~---------~~s~~dva~~i~~~~~~~~ 254 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGS------------G---------KVTAEEVAQLVFDAIRAGR 254 (287)
T ss_pred CccccchhhHHHHHHHhhhhc------------c---------CCCHHHHHHHHHHHHHcCC
Confidence 888999999999998865310 0 1789999999998775443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-18 Score=170.95 Aligned_cols=205 Identities=14% Similarity=0.063 Sum_probs=139.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||++++++|+++|+ +|++ ..|++++ +. .+...++.++.+|+.|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~--------~~r~~~~--l~-~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYG--------AARRVDK--ME-DLASLGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEE--------EeCCHHH--HH-HHHhCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 468999999999999999999999995 9998 4444321 11 1112357889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHH----HHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGA----KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt----~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... +..+++..+++|+.++ ..+++.+++.+.+++|++||...+..
T Consensus 70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------- 139 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIY---------- 139 (273)
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCC----------
Confidence 6899999999752 2335678889999885 55555667777889999999754311
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce--------EEEcC
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK--------FIIGS 217 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~--------~i~g~ 217 (586)
......|+.+|...+.+.+.++ ..+|++++++|||.+.++........+.... .+... .....
T Consensus 140 -----~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 213 (273)
T PRK06182 140 -----TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTS-GNGAYAEQAQAVAASMRS 213 (273)
T ss_pred -----CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccc-cccchHHHHHHHHHHHHH
Confidence 1223579999999999876554 3468999999999998774321111000000 00000 00001
Q ss_pred CCccccccchhHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale 239 (586)
......+.+.+|+|++++.+++
T Consensus 214 ~~~~~~~~~~~~vA~~i~~~~~ 235 (273)
T PRK06182 214 TYGSGRLSDPSVIADAISKAVT 235 (273)
T ss_pred hhccccCCCHHHHHHHHHHHHh
Confidence 1123346688888888888876
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=169.71 Aligned_cols=216 Identities=14% Similarity=0.128 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||+++++.|+++|+ +|+++ .|++++. .......+...+.+|+.|.+++.++++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~--------~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAA--------ARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEE--------eCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHh
Confidence 4568999999999999999999999995 89984 4433210 000011245788999999998888876
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|+|||+|+... ...+++..+++|+.++.++++++.+. + .+++|++||...+.+
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 143 (245)
T PRK07060 76 GAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG------------ 143 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC------------
Confidence 4899999999752 12346677889999999999988653 2 368999999877631
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEcCCCcccccc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..+...|+.+|...|.+++.++.. .|++++++||+.++++....... ........ ......++
T Consensus 144 ---~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 211 (245)
T PRK07060 144 ---LPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLA---------AIPLGRFA 211 (245)
T ss_pred ---CCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHh---------cCCCCCCC
Confidence 123467999999999999887643 58999999999999885321111 11111111 11234589
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+++|+|++++.++... .....|+.+++.++.
T Consensus 212 ~~~d~a~~~~~l~~~~---~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 212 EVDDVAAPILFLLSDA---ASMVSGVSLPVDGGY 242 (245)
T ss_pred CHHHHHHHHHHHcCcc---cCCccCcEEeECCCc
Confidence 9999999999887621 234568888887754
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=168.48 Aligned_cols=218 Identities=16% Similarity=0.160 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|+++|+ +|.+.. .|..++. .....+ ...++.++.+|++|.+++.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~ 75 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGA-LVAIHY-------GRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLV 75 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHH
Confidence 3468999999999999999999999995 776631 2322110 000001 1235788999999999988776
Q ss_pred c-------------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCC
Q 007866 83 E-------------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 83 ~-------------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~ 140 (586)
+ ++|+|||+||.... ....+..+++|+.++.++++++... +.+++|++||..++.
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~--- 152 (254)
T PRK12746 76 EQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL--- 152 (254)
T ss_pred HHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC---
Confidence 5 48999999997521 1123666789999999999988763 345899999988763
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEE
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.+|...|.+.+.++. ..|+++++++|+.+.++...... +.+.......
T Consensus 153 ------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~------ 214 (254)
T PRK12746 153 ------------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS------ 214 (254)
T ss_pred ------------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc------
Confidence 123456799999999998877654 36899999999999887532211 1111111111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.....+++++|+|+++..++... .....|+.|+++++
T Consensus 215 ---~~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 ---SVFGRIGQVEDIADAVAFLASSD---SRWVTGQIIDVSGG 251 (254)
T ss_pred ---CCcCCCCCHHHHHHHHHHHcCcc---cCCcCCCEEEeCCC
Confidence 12245678999999998776521 12346889999875
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=168.33 Aligned_cols=220 Identities=14% Similarity=0.052 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+++|+||||+|+||++++++|+++|+ +|++. .|..... .....+ ...++..+.+|+.+.+++.+++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVN--------AKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLA 75 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEE--------eCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHH
Confidence 468999999999999999999999995 77662 2211100 000000 1134678889999998887766
Q ss_pred c-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCC
Q 007866 83 E-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+ ++|+|||+||.... ....+..+++|+.++.++++++.+. ..+++|++||...|.
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 146 (252)
T PRK06077 76 KATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR--------- 146 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC---------
Confidence 4 57999999997411 1123577899999999999988764 235899999987763
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+.+.|+.+|...|.+++.++.+. ++.+.+++|+.+.++....... ...... .. ...+......+
T Consensus 147 ------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~-~~~~~~-~~---~~~~~~~~~~~ 215 (252)
T PRK06077 147 ------PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFK-VLGMSE-KE---FAEKFTLMGKI 215 (252)
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhh-cccccH-HH---HHHhcCcCCCC
Confidence 23456799999999999999886643 7899999999998764321100 000000 00 00011123468
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++++|+|++++.+++ .+...|++|++++++.
T Consensus 216 ~~~~dva~~~~~~~~-----~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 216 LDPEEVAEFVAAILK-----IESITGQVFVLDSGES 246 (252)
T ss_pred CCHHHHHHHHHHHhC-----ccccCCCeEEecCCee
Confidence 999999999999886 3556788999998753
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=165.35 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=153.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|.+.+. |.+.. ......+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYN-------SSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLV 75 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcC-------CcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 356899999999999999999999999 47776321 11110 0000011 1235788999999999988877
Q ss_pred cC-------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 EG-------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~~-------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+. +|+|||+|+... ...+++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------ 149 (247)
T PRK12935 76 EEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAG------ 149 (247)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCC------
Confidence 64 799999999852 1245778899999999999998864 34569999999755421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.+|...|.+.+.++.+ .|+++++++|+.+.++............... +...
T Consensus 150 ---------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~---------~~~~ 211 (247)
T PRK12935 150 ---------GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVA---------KIPK 211 (247)
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHH---------hCCC
Confidence 134568999999988887766543 4899999999999765422211111111111 1223
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+.|++|++++++.+++. .....|+.||++++.
T Consensus 212 ~~~~~~edva~~~~~~~~~----~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 212 KRFGQADEIAKGVVYLCRD----GAYITGQQLNINGGL 245 (247)
T ss_pred CCCcCHHHHHHHHHHHcCc----ccCccCCEEEeCCCc
Confidence 5689999999999988762 123678999998863
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=163.62 Aligned_cols=228 Identities=20% Similarity=0.175 Sum_probs=173.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+||||||||++|++++++|+++|+ +|++ ..|++++... +. .+++...+|+.++..+...++|+|.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-~v~~--------~~r~~~~~~~---~~-~~v~~~~~d~~~~~~l~~a~~G~~~~ 67 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-EVRA--------AVRNPEAAAA---LA-GGVEVVLGDLRDPKSLVAGAKGVDGV 67 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-EEEE--------EEeCHHHHHh---hc-CCcEEEEeccCCHhHHHHHhccccEE
Confidence 5899999999999999999999995 9999 6776653211 12 68999999999999999999999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
+++.+... ..+ ........+..+..+++. .+++++++.|+..+- ......|..+|..+|
T Consensus 68 ~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~-----------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 68 LLISGLLD-GSD--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD-----------------AASPSALARAKAAVE 126 (275)
T ss_pred EEEecccc-ccc--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC-----------------CCCccHHHHHHHHHH
Confidence 99998764 222 233444444455555544 558889999887542 134578999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccC
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
..+.+ .|++.+++|+...|....... .......+.+....+ ....+++..+|++.++..++. .+..
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~i~~~d~a~~~~~~l~-----~~~~ 192 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAAF---IEAAEAAGLPVIPRG--IGRLSPIAVDDVAEALAAALD-----APAT 192 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchhH---HHHHHhhCCceecCC--CCceeeeEHHHHHHHHHHHhc-----CCcc
Confidence 99999 699999999877776543222 223333444333333 337899999999999999887 4557
Q ss_pred CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCC
Q 007866 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284 (586)
Q Consensus 249 ~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp 284 (586)
.+++|.+++++..+..++++.+.+..|++...+..|
T Consensus 193 ~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~~~~ 228 (275)
T COG0702 193 AGRTYELAGPEALTLAELASGLDYTIGRPVGLIPEA 228 (275)
T ss_pred cCcEEEccCCceecHHHHHHHHHHHhCCcceeeCCc
Confidence 889999999999999999999999999987664443
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-18 Score=167.86 Aligned_cols=217 Identities=16% Similarity=0.104 Sum_probs=151.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-C-CCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-L-LPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~-~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++++||||+|+||++++++|+++|+ +|.+. .|+.+.. . ........++..+.+|+.|++++.++++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVA--------DRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEe--------cCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468999999999999999999999994 88884 4432210 0 0000013457899999999999887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+++... ...+++..+++|+.++.++.+++ ++.+.+++|++||.+.+.
T Consensus 75 i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~--------- 145 (252)
T PRK06138 75 VAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA--------- 145 (252)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc---------
Confidence 5899999999752 22335667899999997776654 456778999999986542
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----HHHHHhcCCCceEEEcCC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-----~l~~~~~~g~~~~i~g~g 218 (586)
+..+..+|+.+|...+.+++.++.+ .|++++++||+.++++....... ........+ .
T Consensus 146 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~--------~ 211 (252)
T PRK06138 146 ------GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRA--------R 211 (252)
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHh--------c
Confidence 1133567999999999999888643 48999999999999875322111 111111000 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.....+++++|+|++++.+++.. .....|+.+.+.++
T Consensus 212 ~~~~~~~~~~d~a~~~~~l~~~~---~~~~~g~~~~~~~g 248 (252)
T PRK06138 212 HPMNRFGTAEEVAQAALFLASDE---SSFATGTTLVVDGG 248 (252)
T ss_pred CCCCCCcCHHHHHHHHHHHcCch---hcCccCCEEEECCC
Confidence 11234788999999999887632 23456778887665
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=170.16 Aligned_cols=231 Identities=14% Similarity=0.055 Sum_probs=154.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+++|+||||+|+||++++++|.++| ++|+++|+.... ... ....+.......++.++.+|+.|.+++.++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEK-AAN--VAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 589885543210 000 00000000111357899999999888776654
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... +..+++..+++|+.++.++++++.. .+ -.++|++||.+...
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~----------- 146 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV----------- 146 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc-----------
Confidence 4799999998652 2234577789999998877776644 45 35899999865321
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-CcHHHHHHHhc--CCCceEEEcCCCccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAK--PGWTKFIIGSGENMS 222 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~--~g~~~~i~g~g~~~~ 222 (586)
+.....+|+.+|+..+.+++.++. .+|+++.++|||.++++... ..++.+..... .+.......++.+.+
T Consensus 147 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (259)
T PRK12384 147 ----GSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKVPLK 222 (259)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhCccc
Confidence 112346799999998888887763 37999999999998876432 23332222111 001111223345567
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+++.+|++.+++.++.. ......|++|++++++.
T Consensus 223 ~~~~~~dv~~~~~~l~~~---~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASP---KASYCTGQSINVTGGQV 257 (259)
T ss_pred CCCCHHHHHHHHHHHcCc---ccccccCceEEEcCCEE
Confidence 889999999999877541 12235789999998763
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=163.57 Aligned_cols=221 Identities=13% Similarity=0.046 Sum_probs=155.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+.+++++||||+|+||++++++|+++| ++|.++++. ... ....++..+.+|+.|.+++.+++++
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~--------~~~------~~~~~~~~~~~D~~~~~~~~~~~~~ 69 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQA--------FLT------QEDYPFATFVLDVSDAAAVAQVCQR 69 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecc--------hhh------hcCCceEEEEecCCCHHHHHHHHHH
Confidence 3566899999999999999999999999 588885443 210 0124578899999999998887753
Q ss_pred -------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 85 -------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 85 -------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+|+|||+++... ...++...+++|+.++.++++++.. .+..++|++||.....
T Consensus 70 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~--------- 140 (252)
T PRK08220 70 LLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV--------- 140 (252)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc---------
Confidence 799999999752 2345778899999999999988753 4556899999976531
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHH--HHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--LVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~--l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+.+.|+.+|...|.+.+.++.+ +|+++++++|+.++++........ .......+.. .....+.+.
T Consensus 141 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 213 (252)
T PRK08220 141 ------PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFP-EQFKLGIPL 213 (252)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHH-HHHhhcCCC
Confidence 2234578999999999999887654 689999999999998853221110 0000000000 000112234
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+++++|+|++++.++.. ......|++..+.++.
T Consensus 214 ~~~~~~~dva~~~~~l~~~---~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 214 GKIARPQEIANAVLFLASD---LASHITLQDIVVDGGA 248 (252)
T ss_pred cccCCHHHHHHHHHHHhcc---hhcCccCcEEEECCCe
Confidence 5689999999999987751 1245667777777654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=165.22 Aligned_cols=218 Identities=14% Similarity=0.071 Sum_probs=152.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++++||||+|+||++++++|+++|+ +|+++ .|++.+. .....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVT--------DRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEE--------eCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999995 89994 4443211 000000 12357899999999999987765
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+|+... ...+++..+++|+.++.++++.+. +.+.+++|++||...++
T Consensus 75 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 146 (251)
T PRK07231 75 ALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR-------- 146 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC--------
Confidence 4799999999741 123456789999998877776665 45678999999987763
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~----~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.+|...+.+++.++.+ .++++++++|+.+-++....... ........ .
T Consensus 147 -------~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~---------~ 210 (251)
T PRK07231 147 -------PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLA---------T 210 (251)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhc---------C
Confidence 2234568999999999888877543 48999999999997654322111 11111111 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+++++|+|++++.++... .....|..+.+.++..
T Consensus 211 ~~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 211 IPLGRLGTPEDIANAALFLASDE---ASWITGVTLVVDGGRC 249 (251)
T ss_pred CCCCCCcCHHHHHHHHHHHhCcc---ccCCCCCeEEECCCcc
Confidence 22345789999999999887521 1235577888877643
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=161.09 Aligned_cols=219 Identities=18% Similarity=0.154 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+++|+|+||||+|+||+++++.|+++|+ +|+++++.. .|..+.. .....+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDIHP----MRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAAL 78 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcCcc----cccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3468999999999999999999999995 888855432 1111100 000000 1236788999999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH-----hCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~-----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||... ...++...+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 79 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 153 (249)
T PRK12827 79 DAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG----- 153 (249)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC-----
Confidence 4 5899999999752 123456788999999999999998 556789999999877631
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+...|+.+|...+.+++.++.+ .|++++++||+.+.++......+. ....+..+
T Consensus 154 ----------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~~~~--------- 212 (249)
T PRK12827 154 ----------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT--EHLLNPVP--------- 212 (249)
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH--HHHHhhCC---------
Confidence 134567999999999888877543 489999999999999864432221 11111111
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+.+.+|+|+++..++... .....|+.+++.++
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~g 247 (249)
T PRK12827 213 VQRLGEPDEVAALVAFLVSDA---ASYVTGQVIPVDGG 247 (249)
T ss_pred CcCCcCHHHHHHHHHHHcCcc---cCCccCcEEEeCCC
Confidence 122457899999988777521 23456888888765
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=164.07 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=155.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++++||||+|+||++++++|+++|+ +|+++++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~--------~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA--------EELEEAAAHLEALGIDALWIAADVADEADIERLA 80 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 3568999999999999999999999995 898854432 210 000000 1235778999999999886655
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~-----gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ +.|+|||+|+... +...+...+++|+.++.++++++... +.+++|++||...+.....
T Consensus 81 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~-- 158 (259)
T PRK08213 81 EETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP-- 158 (259)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc--
Confidence 3 4799999998641 22345677889999999999987654 6679999999876532111
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
...+..+|+.+|+..|.+++.++.+ .|+++.+++|+.+-.+.....++.+.+....+.++
T Consensus 159 ---------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~-------- 221 (259)
T PRK08213 159 ---------EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPL-------- 221 (259)
T ss_pred ---------cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCC--------
Confidence 1134578999999999999887643 58999999999887765444555544444333322
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.-+...+|+|+++..++.. ......|+.+++.++.
T Consensus 222 -~~~~~~~~va~~~~~l~~~---~~~~~~G~~~~~~~~~ 256 (259)
T PRK08213 222 -GRLGDDEDLKGAALLLASD---ASKHITGQILAVDGGV 256 (259)
T ss_pred -CCCcCHHHHHHHHHHHhCc---cccCccCCEEEECCCe
Confidence 1234589999988876641 1235678888887753
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=160.17 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++++||||+|+||++++++|+++| ++|++.++.. +.. .....+ ...++.++.+|+.|.+++.++++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 72 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNR--------EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVA 72 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCH--------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5899854432 210 000000 12468899999999998887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+++... ...+.+..+++|+.++.++++++. +.+.+++|++||.+.++..
T Consensus 73 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~------ 146 (250)
T TIGR03206 73 AAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS------ 146 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC------
Confidence 4899999998641 122346679999999999888775 4567899999999876421
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH------HHHHHHhcCCCceEEEc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~------~~l~~~~~~g~~~~i~g 216 (586)
.....|+.+|...+.+.+.++.+ .+++++++||+.++++...... ..+........+
T Consensus 147 ---------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 212 (250)
T TIGR03206 147 ---------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP----- 212 (250)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC-----
Confidence 23457999999998888877654 4899999999999887422110 111222222111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+...+|+|+++..++.. ......|++++++++.
T Consensus 213 ----~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 213 ----LGRLGQPDDLPGAILFFSSD---DASFITGQVLSVSGGL 248 (250)
T ss_pred ----ccCCcCHHHHHHHHHHHcCc---ccCCCcCcEEEeCCCc
Confidence 12345689999999987641 1234568899998753
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-17 Score=158.90 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=150.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+++++||||+|+||++++++|+++| ++|++. .|+.... .....+ ...++..+.+|+.|.+++.+++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG-ANVVIN--------YASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAV 74 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEE--------eCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 45899999999999999999999999 588663 3322210 000001 1246788899999999887776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+|+... ....++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~------ 148 (248)
T PRK05557 75 DEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMG------ 148 (248)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcC------
Confidence 5 5799999999752 1223567788999999999988865 35678999999744311
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
......|+.+|...|.+++.++. ..+++++++||+.+.++......+.+........ ..
T Consensus 149 ---------~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~---------~~ 210 (248)
T PRK05557 149 ---------NPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQI---------PL 210 (248)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcC---------CC
Confidence 12356799999999988876653 3589999999998866544333333333322221 12
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+.+++|+|+++..++.. ......|+.|+++++.
T Consensus 211 ~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASD---EAAYITGQTLHVNGGM 245 (248)
T ss_pred CCCcCHHHHHHHHHHHcCc---ccCCccccEEEecCCc
Confidence 3467899999999876651 1245678899998763
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=160.22 Aligned_cols=219 Identities=15% Similarity=0.116 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||+|+||++++++|+++|+ +|++. ..|...+. .....+ ...++.++.+|+.|++++.++++
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVN-------YARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE-------cCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999999999995 76652 22322110 000000 12457889999999998887775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+|+... ...+....+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 146 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-------- 146 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------
Confidence 4799999998652 1223355788999999999888865 4566999999976542
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.+|...|.+++.++.+ .|+++++++|+.+..+..... ...+....... ..
T Consensus 147 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 210 (250)
T PRK08063 147 -------YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAK---------TP 210 (250)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcC---------CC
Confidence 1234568999999999999887543 689999999999987643211 11122111111 11
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+++.+|+|++++.+++.. .....|+.+++.++..
T Consensus 211 ~~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 211 AGRMVEPEDVANAVLFLCSPE---ADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCCCcCHHHHHHHHHHHcCch---hcCccCCEEEECCCee
Confidence 234688999999999887521 2245688999988754
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=164.40 Aligned_cols=218 Identities=18% Similarity=0.161 Sum_probs=153.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||+++++.|+++| ++|++++ |+.............++..+.+|+.|.+++.++++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~--------r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKG-ARVALLD--------RSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5898844 33221111111123456789999999998877764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...++...+++|+.++.++++++.. .+.+++|++||.....
T Consensus 85 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 153 (255)
T PRK06841 85 SAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV----------- 153 (255)
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc-----------
Confidence 4799999999752 1234567899999999999998764 3567999999986531
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.+|...|.+.+.++.+ .|+++..++||.+..+....... ........+ .+...+
T Consensus 154 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 220 (255)
T PRK06841 154 ----ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKL---------IPAGRF 220 (255)
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhc---------CCCCCC
Confidence 1123457999999999888877654 58999999999997764321111 111111111 123457
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+.+|+|++++.++.. ......|+.+.+.++..
T Consensus 221 ~~~~~va~~~~~l~~~---~~~~~~G~~i~~dgg~~ 253 (255)
T PRK06841 221 AYPEEIAAAALFLASD---AAAMITGENLVIDGGYT 253 (255)
T ss_pred cCHHHHHHHHHHHcCc---cccCccCCEEEECCCcc
Confidence 8899999999988752 12346788888887654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=159.99 Aligned_cols=224 Identities=17% Similarity=0.134 Sum_probs=154.0
Q ss_pred CCCC-CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 1 MPFD-EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 1 M~~~-~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
|++. .+.+++|+||||+|.||++++++|.++| ++|+++ .|+.... ...++.++.+|+.|.+++.
T Consensus 1 ~~~~~~~~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~--------~r~~~~~------~~~~~~~~~~D~~~~~~~~ 65 (260)
T PRK06523 1 MSFFLELAGKRALVTGGTKGIGAATVARLLEAG-ARVVTT--------ARSRPDD------LPEGVEFVAADLTTAEGCA 65 (260)
T ss_pred CCcCcCCCCCEEEEECCCCchhHHHHHHHHHCC-CEEEEE--------eCChhhh------cCCceeEEecCCCCHHHHH
Confidence 5443 4567999999999999999999999999 589984 4433211 1235788999999998876
Q ss_pred HHhc-------CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccC
Q 007866 80 KVLE-------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDG 139 (586)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~ 139 (586)
++++ ++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~- 144 (260)
T PRK06523 66 AVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP- 144 (260)
T ss_pred HHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-
Confidence 5543 5799999998531 23356778899999998776654 4456678999999866421
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHH-----------HH
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLV-----------NL 205 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~-----------~~ 205 (586)
...+..+|+.+|...|.+.+.++.+ .|+++.+++||.+.++........+. ..
T Consensus 145 -------------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 211 (260)
T PRK06523 145 -------------LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQI 211 (260)
T ss_pred -------------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHH
Confidence 0124578999999999998887643 58999999999998875322111110 00
Q ss_pred hcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+.+.. .+.....+...+|+|+++..++.. ......|+.+.+.++...|
T Consensus 212 ~~~~~------~~~p~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 212 IMDSL------GGIPLGRPAEPEEVAELIAFLASD---RAASITGTEYVIDGGTVPT 259 (260)
T ss_pred HHHHh------ccCccCCCCCHHHHHHHHHHHhCc---ccccccCceEEecCCccCC
Confidence 00000 001122345689999999877751 1245678899998876544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=161.17 Aligned_cols=223 Identities=15% Similarity=0.126 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+|+|+||||+|+||+++++.|+++| ++|++.+ |++++. .+........+.++.+|+.|++++.++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG-GIVIAAD--------IDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEe--------cChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 46899999999999999999999999 5888843 332210 000111123456779999999998887
Q ss_pred hcC-------CCEEEEcccCCC----------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCC
Q 007866 82 LEG-------ASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 82 l~~-------~D~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~ 140 (586)
+++ +|+|||+|+... +.......+++|+.++.++++++ ++.+.+++|++||...+....
T Consensus 74 ~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~ 153 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK 153 (256)
T ss_pred HHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc
Confidence 753 799999997531 12335677888887776665544 455778999999976553211
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
. ...++. +..+...|+.+|...|.+.+.++. ..|+++++++|+.++++... .+........
T Consensus 154 --~-~~~~~~--~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~----~~~~~~~~~~------- 217 (256)
T PRK09186 154 --F-EIYEGT--SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE----AFLNAYKKCC------- 217 (256)
T ss_pred --c-hhcccc--ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH----HHHHHHHhcC-------
Confidence 1 111222 122334799999999999876544 36899999999988765321 1222221111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+++++|+|++++.++... .....|+.+++.++.
T Consensus 218 --~~~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~~g~ 254 (256)
T PRK09186 218 --NGKGMLDPDDICGTLVFLLSDQ---SKYITGQNIIVDDGF 254 (256)
T ss_pred --CccCCCCHHHhhhhHhheeccc---cccccCceEEecCCc
Confidence 1134789999999999887511 224567788877653
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=164.24 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=154.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+|++|||||+|+||+++++.|+++| ++|.+.++... .+ ........+ ...++..+.+|+.|.+++.++++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREG-ADIALNYLPEE---EQ--DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCcc---hH--HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH
Confidence 45899999999999999999999999 48877433210 00 000000011 12357788999999988877664
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++... .-.++|++||...|..
T Consensus 128 ~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~--------- 198 (300)
T PRK06128 128 AVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP--------- 198 (300)
T ss_pred HHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC---------
Confidence 5899999999641 23457889999999999999998753 2248999999988732
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
......|+.||...+.+.+.++.+ +|+++.+++||.+.++.... ............ ....
T Consensus 199 ------~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~---------~p~~ 263 (300)
T PRK06128 199 ------SPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSE---------TPMK 263 (300)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcC---------CCCC
Confidence 123457999999999999887654 58999999999999885321 112222222221 2233
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
.+.+.+|+|.+++.++.. ......|+.|++.++..+
T Consensus 264 r~~~p~dva~~~~~l~s~---~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 264 RPGQPVEMAPLYVLLASQ---ESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred CCcCHHHHHHHHHHHhCc---cccCccCcEEeeCCCEeC
Confidence 467899999999876541 123456899999987644
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=185.22 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=159.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++|+||||+|+||+++++.|.++| ++|+++|+.. +.. .....+. ..++..+.+|+.|.+++.++++
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~--------~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~ 490 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDE--------EAAEAAAAELGGPDRALGVACDVTDEAAVQAAFE 490 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCH--------HHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999999 4899955543 110 0000011 1367889999999998877764
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCC-CEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKV-RRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gv-kr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... ...+++..+++|+.|+.++++++. +.+. .++|++||...+..
T Consensus 491 ~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~------ 564 (681)
T PRK08324 491 EAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNP------ 564 (681)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCC------
Confidence 5899999999652 233467789999999999977664 4454 69999999876521
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcc-cCCCCCcHHHHHHHhcCCCce----EEEc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVF-GPGDTQLVPLLVNLAKPGWTK----FIIG 216 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~-G~~~~~~~~~l~~~~~~g~~~----~i~g 216 (586)
......|+.+|...|.+++.++. ..|+++.+++|+.+| +.+...-..........+... ..+.
T Consensus 565 ---------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~ 635 (681)
T PRK08324 565 ---------GPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYR 635 (681)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHH
Confidence 13356899999999999988754 357999999999998 553211000001111112111 1234
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++...+++++++|+|++++.++.. ......|++++++++..
T Consensus 636 ~~~~l~~~v~~~DvA~a~~~l~s~---~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 636 ARNLLKREVTPEDVAEAVVFLASG---LLSKTTGAIITVDGGNA 676 (681)
T ss_pred hcCCcCCccCHHHHHHHHHHHhCc---cccCCcCCEEEECCCch
Confidence 556678899999999999987731 02456788999998764
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=154.92 Aligned_cols=208 Identities=18% Similarity=0.072 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+|+||||+|+||++++++|+++| ++|++ +.|.+... ...+++.+|+.|.+++.++++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~--------~~r~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIG--------IARSAIDD--------FPGELFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEE--------EeCCcccc--------cCceEEEeeCCCHHHHHHHHHHHH
Confidence 35899999999999999999999999 58998 44443321 112578999999998877765
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|+|||+|+... ...++...+++|+.++.++.+++ ++.+.+++|++||...|+.
T Consensus 65 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 133 (234)
T PRK07577 65 EIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA----------- 133 (234)
T ss_pred HhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC-----------
Confidence 5899999999752 22345678899999988876655 4567789999999877631
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCCcccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
....+|+.+|...|.+.+.++. ++|++++++||+.+..+..... .+.......... ....
T Consensus 134 -----~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~---------~~~~ 199 (234)
T PRK07577 134 -----LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASI---------PMRR 199 (234)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcC---------CCCC
Confidence 2246799999999988877643 3589999999999987642211 111111111111 1112
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+|+|.+++.++... .....|+.+.+.++.
T Consensus 200 ~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 200 LGTPEEVAAAIAFLLSDD---AGFITGQVLGVDGGG 232 (234)
T ss_pred CcCHHHHHHHHHHHhCcc---cCCccceEEEecCCc
Confidence 346899999999887621 234668888887764
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-17 Score=158.85 Aligned_cols=204 Identities=14% Similarity=0.052 Sum_probs=140.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
++|+++||||+|+||+++++.|+++ + +|+++ .|++... .+... ..+++++.+|+.|.+++.++++
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~--------~r~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~ 69 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-H-TLLLG--------GRPAERLDELAAE--LPGATPFPVDLTDPEAIAAAVEQL 69 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-C-CEEEE--------eCCHHHHHHHHHH--hccceEEecCCCCHHHHHHHHHhc
Confidence 3689999999999999999999998 5 89984 4433210 01001 1257889999999999998886
Q ss_pred -CCCEEEEcccCCCC-------CCChhHHHHHHHHHH----HHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -GASTVFYVDATDLN-------TDDFYNCYMIIVQGA----KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt----~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++|+|||+++.... ..++...++.|+.+. .++++++++. .+++|++||...++.
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~------------- 135 (227)
T PRK08219 70 GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRA------------- 135 (227)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCc-------------
Confidence 58999999997521 123456688888884 4555555554 468999999877631
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC-CC-ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNI-DG-LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~-~g-l~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
..+..+|+.+|...|.+++.++.. .+ +++.+++|+.+.++.... +... .+. ......+++++|
T Consensus 136 --~~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~--~~~-------~~~~~~~~~~~d 200 (227)
T PRK08219 136 --NPGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG----LVAQ--EGG-------EYDPERYLRPET 200 (227)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh----hhhh--hcc-------ccCCCCCCCHHH
Confidence 133568999999999888876432 23 899999998776543211 1110 011 112246899999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
+|++++.+++ ....+.++++.-
T Consensus 201 va~~~~~~l~------~~~~~~~~~~~~ 222 (227)
T PRK08219 201 VAKAVRFAVD------APPDAHITEVVV 222 (227)
T ss_pred HHHHHHHHHc------CCCCCccceEEE
Confidence 9999999987 234566777754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=157.26 Aligned_cols=218 Identities=14% Similarity=0.123 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||+++++.|+++|+ +|.++++ .+++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDG--------LAAEARELAAALEAAGGRAHAIAADLADPASVQRFF 75 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3468999999999999999999999995 8888443 22210 000000 1236888999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||++|... +..+.+..++.|+.++.++++++... +..++|++||...+.+
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------ 149 (250)
T PRK12939 76 DAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWG------ 149 (250)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccC------
Confidence 4 5899999999752 12245667889999999999887543 3459999999766421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~ 220 (586)
......|+.+|...|.+++.++. ..++++++++||.+..+......+ .+...... ..+
T Consensus 150 ---------~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---------~~~ 211 (250)
T PRK12939 150 ---------APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLK---------GRA 211 (250)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHh---------cCC
Confidence 12345799999999999987753 358999999999887664322111 22222222 223
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+++++|+|++++.++... .....|+.+.+.++.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~---~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 212 LERLQVPDDVAGAVLFLLSDA---ARFVTGQLLPVNGGF 247 (250)
T ss_pred CCCCCCHHHHHHHHHHHhCcc---ccCccCcEEEECCCc
Confidence 456789999999999988621 234678899988864
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=159.61 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=152.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+|+||||+|+||++++++|+++| ++|.++++. +... .....+ ...++..+.+|+.|.+++.++++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAART--------AERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCC--------HHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 46899999999999999999999999 599985543 2210 000111 12357889999999988876664
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+|+... ...++...+++|+.++.++++++... ..+++|++||...+.
T Consensus 75 ~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~-------- 146 (258)
T PRK07890 75 LALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH-------- 146 (258)
T ss_pred HHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc--------
Confidence 4799999998641 12346788999999999999998653 125899999986642
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWT 211 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-----------~~l~~~~~~g~~ 211 (586)
+..+...|+.+|...|.+++.++.+ .+++++++||+.++|+...... +.+.....+
T Consensus 147 -------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (258)
T PRK07890 147 -------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA--- 216 (258)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh---
Confidence 1234568999999999999988643 5899999999999998532211 111111111
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+.+++|+|++++.+++.. .....|+.+.+.++.
T Consensus 217 ------~~~~~~~~~~~dva~a~~~l~~~~---~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 217 ------NSDLKRLPTDDEVASAVLFLASDL---ARAITGQTLDVNCGE 255 (258)
T ss_pred ------cCCccccCCHHHHHHHHHHHcCHh---hhCccCcEEEeCCcc
Confidence 112234678999999998877521 234667777776654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=156.49 Aligned_cols=218 Identities=14% Similarity=0.049 Sum_probs=150.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++|+++||||+|+||++++++|+++|+ +|++++... .... .....+ ...++..+.+|++|.+++.++++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRS-------RDEAEALAAEIRALGRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC-------HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 467999999999999999999999994 887743321 1100 000000 12357889999999998887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++.++++|+.++.++++++... +-+++|++||...+.+
T Consensus 80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~------- 152 (258)
T PRK09134 80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL------- 152 (258)
T ss_pred HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC-------
Confidence 3799999999741 23356788999999999999987754 2357888887655421
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
.....+|+.+|...|.+.+.++.+. ++++++++||.+...... ....+... ..+.+ ...
T Consensus 153 --------~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-~~~~~~~~-~~~~~---------~~~ 213 (258)
T PRK09134 153 --------NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-SPEDFARQ-HAATP---------LGR 213 (258)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-ChHHHHHH-HhcCC---------CCC
Confidence 1123479999999999998876532 489999999988764321 12222221 11111 112
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCH
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~ 263 (586)
..+++|+|++++.+++ .+...|+.|++.++..+++
T Consensus 214 ~~~~~d~a~~~~~~~~-----~~~~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 214 GSTPEEIAAAVRYLLD-----APSVTGQMIAVDGGQHLAW 248 (258)
T ss_pred CcCHHHHHHHHHHHhc-----CCCcCCCEEEECCCeeccc
Confidence 4679999999999988 3567889999988765554
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=157.65 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++++++||||+|+||++++++|+++| ++|++. .|+.+.. .....+ ..++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g-~~v~~~--------~r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEG-ARVAIT--------GRDPASLEAARAEL-GESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEe--------cCCHHHHHHHHHHh-CCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 589884 4432210 000001 2357788999999887665543
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccc-cccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADV-VFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~v-yg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++... ...++|++||... |+
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~---------- 143 (249)
T PRK06500 74 LAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG---------- 143 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC----------
Confidence 5899999999752 22356788999999999999999742 2347777777543 31
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g 218 (586)
....++|+.+|...|.+++.++. ..|++++++||+.+++|... .....+.+....+.++
T Consensus 144 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~------ 211 (249)
T PRK06500 144 ------MPNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPL------ 211 (249)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCC------
Confidence 12356899999999999977653 25899999999999987321 1222233333332221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.-+...+|+|+++..++.. ......|..+.+.++
T Consensus 212 ---~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~~gg 245 (249)
T PRK06500 212 ---GRFGTPEEIAKAVLYLASD---ESAFIVGSEIIVDGG 245 (249)
T ss_pred ---CCCcCHHHHHHHHHHHcCc---cccCccCCeEEECCC
Confidence 1235789999999887651 123455666666654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=160.97 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=122.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++++|+||||+|+||++++++|.++| ++|++. .|+++. . ..+...+++.+.+|+.|.+++.++++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G-~~Vi~~--------~r~~~~--~-~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDG-WRVFAT--------CRKEED--V-AALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE--------ECCHHH--H-HHHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999 599984 443321 1 11122357889999999988776654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHH----HHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... +..+.+..+++|+.| ++++++.+++.+.+++|++||...+.
T Consensus 71 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~---------- 140 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV---------- 140 (277)
T ss_pred HHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------
Confidence 3799999998752 122346788999999 66777778888888999999975431
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGP 193 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~ 193 (586)
+..+...|+.||+..|.+.+.++ ..+|+++++++||.+-.+
T Consensus 141 -----~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 141 -----PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred -----CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 22345789999999999988764 346899999999988655
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=158.60 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=147.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++++||||+|+||.+++++|+++|+ +|+..+. |.++. ......+ ...++.++.+|+.|.+++.++++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~-~vv~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY-AVCLNYL-------RNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEA 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-eEEEecC-------CCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHH
Confidence 46899999999999999999999994 7766332 11110 0000001 12357789999999998887775
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC------C-CCEEEEecCccccccCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC------K-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~------g-vkr~I~~SS~~vyg~~~~~ 142 (586)
.+|+|||+|+... ...+++..+++|+.++.++++++... + -.++|++||...+...+
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~-- 151 (248)
T PRK06123 74 VDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP-- 151 (248)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC--
Confidence 5799999999752 12245678999999999998887543 1 23699999976542110
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g 218 (586)
.....|+.+|+..|.+++.++.+ +|++++++||+.++|+... ...+..........+.
T Consensus 152 ------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~------ 213 (248)
T PRK06123 152 ------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPM------ 213 (248)
T ss_pred ------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCC------
Confidence 11135999999999988877543 5899999999999998532 2223333333222221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.-+.+++|++++++.++.. ......|+.|++.++
T Consensus 214 ---~~~~~~~d~a~~~~~l~~~---~~~~~~g~~~~~~gg 247 (248)
T PRK06123 214 ---GRGGTAEEVARAILWLLSD---EASYTTGTFIDVSGG 247 (248)
T ss_pred ---CCCcCHHHHHHHHHHHhCc---cccCccCCEEeecCC
Confidence 1124689999999987752 122367889999875
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=156.64 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=142.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++|+||||+|+||+++++.|+++| ++|+++++.. ... .....+ ...++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNE--------TRLASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 4689999999999999999999999 5999954432 110 000000 12367889999999998887765
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+|+... ....+...+++|+.++.++++.+.. .+.+++|++||...+++
T Consensus 72 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 143 (263)
T PRK06181 72 AVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTG-------- 143 (263)
T ss_pred HHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCC--------
Confidence 5899999999752 1122466799999999999998853 24578999999887631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.+|...|.+.+.++. ..|+++++++|+.+..+....... ..+.+ ....+....+
T Consensus 144 -------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~------~~~~~--~~~~~~~~~~ 208 (263)
T PRK06181 144 -------VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALD------GDGKP--LGKSPMQESK 208 (263)
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhcc------ccccc--cccccccccC
Confidence 23457899999999999876642 368999999999987654221110 11221 1112223347
Q ss_pred ccchhHHHHHHHHHHH
Q 007866 224 FTYVENVAHAHVCAAE 239 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale 239 (586)
+++++|+|+++..+++
T Consensus 209 ~~~~~dva~~i~~~~~ 224 (263)
T PRK06181 209 IMSAEECAEAILPAIA 224 (263)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8999999999999887
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=160.73 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=153.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
++|+++||||+|+||.+++++|+++| ++|.+.++.... ........+ ...++.++.+|+.|.+++.++++
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHE------DANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcch------HHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 588885443210 000000011 12357789999999998877764
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+|+... ...++...+++|+.++.++++++... ...++|++||.+.|...
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~-------- 189 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN-------- 189 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC--------
Confidence 4799999999641 12235678999999999999998753 23589999999887321
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
.....|+.+|...+.+++.++.+ .|+++++++||.++.+.... ..+...+... .......
T Consensus 190 -------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~---------~~~~~~~ 253 (290)
T PRK06701 190 -------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFG---------SNTPMQR 253 (290)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHH---------hcCCcCC
Confidence 12356999999999998888754 48999999999998874321 1111111111 1223356
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+++|+|++++.++... .....|+.+++.++.
T Consensus 254 ~~~~~dva~~~~~ll~~~---~~~~~G~~i~idgg~ 286 (290)
T PRK06701 254 PGQPEELAPAYVFLASPD---SSYITGQMLHVNGGV 286 (290)
T ss_pred CcCHHHHHHHHHHHcCcc---cCCccCcEEEeCCCc
Confidence 788999999999877621 234578899998764
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=155.80 Aligned_cols=219 Identities=14% Similarity=0.091 Sum_probs=152.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+++++||||+|+||+++++.|.++| ++|+++++... +........ ....++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGN------DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcH------HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999 59999554321 000000000 012458899999999998877764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
.+|+|||+++... ...+++.++++|+.++.++.. .+++.+.+++|++||...+..
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~--------- 145 (245)
T PRK12824 75 EEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG--------- 145 (245)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC---------
Confidence 3799999999651 233467788999999988854 446667789999999876521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
......|+.+|...+.+++.++. ..|+++++++|+.+.++..+..-+.......... ....+
T Consensus 146 ------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~~~ 210 (245)
T PRK12824 146 ------QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQI---------PMKRL 210 (245)
T ss_pred ------CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcC---------CCCCC
Confidence 12345799999999888877753 3589999999999988754332222222222211 12335
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+|+++++..++.. ......|+.++++++..
T Consensus 211 ~~~~~va~~~~~l~~~---~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 211 GTPEEIAAAVAFLVSE---AAGFITGETISINGGLY 243 (245)
T ss_pred CCHHHHHHHHHHHcCc---cccCccCcEEEECCCee
Confidence 5689999999877641 12346789999988764
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=154.74 Aligned_cols=184 Identities=16% Similarity=0.061 Sum_probs=138.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++|+||||+|+||++++++|+++|+.+|+++ .|+..+. .. ...++.++.+|+.|.+++.++++
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~--------~r~~~~~--~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAA--------ARDPESV--TD--LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEE--------ecChhhh--hh--cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 468999999999999999999999994378884 4443311 11 23468899999999999988886
Q ss_pred CCCEEEEcccCC-C-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 ~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
.+|+|||+|+.. . ...++...+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~-------------- 138 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV-------------- 138 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc--------------
Confidence 379999999982 1 234456788999999999999865 35677899999987753
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.+.++.... . . ...+..+
T Consensus 139 -~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~------------~------~----~~~~~~~ 195 (238)
T PRK08264 139 -NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG------------L------D----APKASPA 195 (238)
T ss_pred -CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccccc------------C------C----cCCCCHH
Confidence 1234568999999999998877543 48999999999987653110 0 0 1146678
Q ss_pred HHHHHHHHHHH
Q 007866 229 NVAHAHVCAAE 239 (586)
Q Consensus 229 Dva~ai~~ale 239 (586)
|++++++.+++
T Consensus 196 ~~a~~~~~~~~ 206 (238)
T PRK08264 196 DVARQILDALE 206 (238)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=159.54 Aligned_cols=219 Identities=18% Similarity=0.150 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+|.||++++++|+++| +.|+++ .|+++.......+ ...++.++.+|+.|.+++.++++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIF--------GRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVE 75 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEE--------cCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999 588884 4433211000000 12467889999999998887775
Q ss_pred -------CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+.++++++||...+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------- 145 (258)
T PRK08628 76 QTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT---------- 145 (258)
T ss_pred HHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------
Confidence 4799999999641 1134677889999999999887753 2346899999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH------HHHHHhcCCCceEEEcCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~------~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.+|...|.+++.++. ..|++++.+||+.++++.....+. .......... + .+
T Consensus 146 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 215 (258)
T PRK08628 146 -----GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI----P-LG 215 (258)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC----C-cc
Confidence 123456899999999999998764 368999999999999874221110 0011111100 0 01
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..++..+|+|++++.++... .....|+.+.+.++.
T Consensus 216 ---~~~~~~~dva~~~~~l~~~~---~~~~~g~~~~~~gg~ 250 (258)
T PRK08628 216 ---HRMTTAEEIADTAVFLLSER---SSHTTGQWLFVDGGY 250 (258)
T ss_pred ---ccCCCHHHHHHHHHHHhChh---hccccCceEEecCCc
Confidence 24677899999999887621 234667888887653
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=156.43 Aligned_cols=218 Identities=14% Similarity=0.072 Sum_probs=148.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+++++||||+|+||+++++.|+++| ++|.++|+... +.. .....+ ..++.++.+|+.|.+++.++++
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~----~~~---~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRE----RGS---KVAKAL-GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHH----HHH---HHHHHc-CCceEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 58988554321 000 000011 2357889999999988765543
Q ss_pred -----CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.+|+|||+||.... ..+++..+++|+.++.++++++... ...++|++||...+..
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~-------- 150 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS-------- 150 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC--------
Confidence 37999999997521 2235688999999999999998632 2358999999876521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
....+.|+.+|+..|.+++.++.+. ++++.+++|+.+.++..... ...+..... .. .....
T Consensus 151 -------~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~-~~--------~~~~~ 214 (255)
T PRK05717 151 -------EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEADH-AQ--------HPAGR 214 (255)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHHh-hc--------CCCCC
Confidence 1224579999999999998876543 58999999999998753211 111111110 00 01123
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+.+|+|.++..++... .....|+.+.+.++.
T Consensus 215 ~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 215 VGTVEDVAAMVAWLLSRQ---AGFVTGQEFVVDGGM 247 (255)
T ss_pred CcCHHHHHHHHHHHcCch---hcCccCcEEEECCCc
Confidence 668999999998776511 124567888886653
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=159.47 Aligned_cols=225 Identities=15% Similarity=0.117 Sum_probs=151.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++|+.... .+ .....+ ...++.++.+|+.|.+++.++++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDL--GQ-----NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDF 87 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHH--HH-----HHHHHhcCCCceEEEEeecCCHHHHHHHHHH
Confidence 346899999999999999999999999 599886543210 00 000011 12368899999999999888775
Q ss_pred ------CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||.... ..+++..+++|+.|+.++++++... +-.++|++||......
T Consensus 88 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------ 161 (280)
T PLN02253 88 TVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIG------ 161 (280)
T ss_pred HHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhccc------
Confidence 58999999997421 2346789999999999999877642 3357899888754310
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH------HHHHHhcCCCceEEE
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFII 215 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~------~l~~~~~~g~~~~i~ 215 (586)
......|+.+|...|.+.+.++.+ +|+++.+++|+.+.++......+ ........ ..
T Consensus 162 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~ 227 (280)
T PLN02253 162 ---------GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRA-----FA 227 (280)
T ss_pred ---------CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHH-----Hh
Confidence 112357999999999999887653 58999999999998763211110 01100000 00
Q ss_pred cCCCc-cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 216 GSGEN-MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 216 g~g~~-~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..... ....++++|+|+++..++.. ......|+.+++.++...
T Consensus 228 ~~~~~l~~~~~~~~dva~~~~~l~s~---~~~~i~G~~i~vdgG~~~ 271 (280)
T PLN02253 228 GKNANLKGVELTVDDVANAVLFLASD---EARYISGLNLMIDGGFTC 271 (280)
T ss_pred hcCCCCcCCCCCHHHHHHHHHhhcCc---ccccccCcEEEECCchhh
Confidence 00011 12347899999999887641 123456888999877543
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=158.82 Aligned_cols=158 Identities=14% Similarity=0.108 Sum_probs=124.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--- 84 (586)
+++|+||||+|+||++++++|.++| ++|++ ..|++... ....+++++.+|+.|.+++.+++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~--------~~r~~~~~-----~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG-YRVFG--------TSRNPARA-----APIPGVELLELDVTDDASVQAAVDEVIA 69 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEE--------EeCChhhc-----cccCCCeeEEeecCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999 58998 44443311 0124678999999999998888763
Q ss_pred ----CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 85 ----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 85 ----~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+|+|||+||... ...+.+..+++|+.|+.++++++ ++.+.+++|++||...+..
T Consensus 70 ~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 138 (270)
T PRK06179 70 RAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLP----------- 138 (270)
T ss_pred hCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCC-----------
Confidence 699999999752 12346788999999999998874 5678889999999866521
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG 194 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~ 194 (586)
......|+.+|...|.+.+.++. .+|+++++++|+.+.++.
T Consensus 139 ----~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 139 ----APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 12346899999999999887643 369999999999998764
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=156.52 Aligned_cols=217 Identities=13% Similarity=0.059 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||.++++.|+++|+ +|++.++.... +.. ....... ...++..+.+|+.|.+++.++++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~-~~~--~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEK-LEE--AVAECGA--LGTEVRGYAANVTDEEDVEATFAQIA 77 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHH-HHH--HHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999995 88885543210 000 0000000 12457889999999888776554
Q ss_pred ----CCCEEEEcccCCC----------------CCCChhHHHHHHHHHHHHHHHHHHh----C-CCCEEEEecCcccccc
Q 007866 84 ----GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFD 138 (586)
Q Consensus 84 ----~~D~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~lleaa~~----~-gvkr~I~~SS~~vyg~ 138 (586)
++|+|||+||... ...++..++++|+.++.++.+++.. . .-.+++++||.+.|+.
T Consensus 78 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~ 157 (253)
T PRK08217 78 EDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN 157 (253)
T ss_pred HHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC
Confidence 3699999999642 1123456788999999877665432 2 2247999999876631
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~ 215 (586)
.+...|+.+|+..|.+++.++.+ +|++++.++|+.+.++......+........+.
T Consensus 158 ----------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~----- 216 (253)
T PRK08217 158 ----------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMI----- 216 (253)
T ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcC-----
Confidence 23567999999999998887642 689999999999988765444444444333322
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+.+.+|+|+++..+++ .....|++|+++++.
T Consensus 217 ----~~~~~~~~~~~a~~~~~l~~-----~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 217 ----PVGRLGEPEEIAHTVRFIIE-----NDYVTGRVLEIDGGL 251 (253)
T ss_pred ----CcCCCcCHHHHHHHHHHHHc-----CCCcCCcEEEeCCCc
Confidence 12346689999999998886 345688999998864
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=157.94 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=117.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++|+||||+|+||++++++|+++| ++|+++ .|.+... .+... ....++..+.+|+.|.+++.++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAG--------VQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 5789999999999999999999999 589884 4432110 00000 012357889999999999998887
Q ss_pred CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCCCCCccc
Q 007866 84 GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 84 ~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
++|+|||+|+... +..+.+..+++|+.++.++.+ .+++.+.+++|++||...+..
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-------------- 138 (257)
T PRK09291 73 DVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT-------------- 138 (257)
T ss_pred CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC--------------
Confidence 7999999999752 122345678889988776655 445667789999999754311
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcc
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVF 191 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~ 191 (586)
......|+.+|...|.+.+.++. ..|++++++||+.+.
T Consensus 139 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 139 -GPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 12346899999999998876643 368999999998764
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-16 Score=153.88 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=146.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++++||||+|+||++++++|.++| +.|.+.+ |..++. ..... ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~--------~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQG-AIVGLHG--------TRVEKLEALAAE-LGERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEc--------CCHHHHHHHHHH-hCCceEEEEccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 4887733 322110 00000 12357889999999988877653
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+|+... ...+++..+++|+.++.++++++.. .+.+++|++||...+...
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 146 (245)
T PRK12936 74 AEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN------- 146 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC-------
Confidence 5899999999752 2235678899999999998887643 456799999997554211
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
.....|+.+|...+.+.+.++. ..|+++++++|+.+..+......+........ ......
T Consensus 147 --------~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~---------~~~~~~ 209 (245)
T PRK12936 147 --------PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMG---------AIPMKR 209 (245)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhc---------CCCCCC
Confidence 1235799999988777766543 25899999999987654322211111111111 011233
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+.+|+++++..++.. ......|+.+++.++.
T Consensus 210 ~~~~~~ia~~~~~l~~~---~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 210 MGTGAEVASAVAYLASS---EAAYVTGQTIHVNGGM 242 (245)
T ss_pred CcCHHHHHHHHHHHcCc---cccCcCCCEEEECCCc
Confidence 56799999999876641 1223568899998764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=151.68 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=148.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|.||++++++|.++|+ +|.++ .|+... ..++..+.+|+.|++++.++++
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~--------~r~~~~--------~~~~~~~~~D~~~~~~i~~~~~~~ 66 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINF--------DIKEPS--------YNDVDYFKVDVSNKEQVIKGIDYV 66 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEE--------eCCccc--------cCceEEEEccCCCHHHHHHHHHHH
Confidence 4578999999999999999999999994 88884 443321 1257889999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++++++.. .+..++|++||...+.
T Consensus 67 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 136 (258)
T PRK06398 67 ISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA---------- 136 (258)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------
Confidence 5899999999741 2234567789999999999887753 4567999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-------HHH-HHHHhcCCCceEEEcC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-------VPL-LVNLAKPGWTKFIIGS 217 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~-------~~~-l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.+|+..|.+.+.++.+. ++++.+++||.+-.+..... .+. ..+... .++.
T Consensus 137 -----~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 205 (258)
T PRK06398 137 -----VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIR------EWGE 205 (258)
T ss_pred -----CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHH------hhhh
Confidence 12345789999999999998876542 38999999998865421100 000 000000 0011
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 206 ~~~~~~~~~p~eva~~~~~l~s~---~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 206 MHPMKRVGKPEEVAYVVAFLASD---LASFITGECVTVDGGL 244 (258)
T ss_pred cCCcCCCcCHHHHHHHHHHHcCc---ccCCCCCcEEEECCcc
Confidence 11223456799999999876641 1234678888887764
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-16 Score=152.76 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=151.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.++++|+||||+|+||.++++.|+++|+ +|+++ ..|.+.+. .....+ ...++.++.+|+.|++++.+++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA-KVVIA-------YDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEE-------cCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999999999995 88873 03332210 000000 1235788999999999887776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||++|... ...+++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 75 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~------ 148 (247)
T PRK05565 75 EQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG------ 148 (247)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC------
Confidence 5 6899999999762 1234577889999998888877754 45678999999876531
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
......|+.+|...+.+++.++.+ .|++++++||+.+-.+..+...+........ ....
T Consensus 149 ---------~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~---------~~~~ 210 (247)
T PRK05565 149 ---------ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAE---------EIPL 210 (247)
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHh---------cCCC
Confidence 123457999999888877766542 5899999999998766443322221111111 0112
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+|++++++.++... .....|+.+++.++.
T Consensus 211 ~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~~ 245 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDD---ASYITGQIITVDGGW 245 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCc---cCCccCcEEEecCCc
Confidence 34668899999998877522 345678888887753
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=152.90 Aligned_cols=217 Identities=16% Similarity=0.073 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|.||+++++.|.++|+ +|.+.+ +.... ....+...++.++.+|+.|.+++.++++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~--------~~~~~--~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLY--------NSAEN--EAKELREKGVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe--------CCcHH--HHHHHHhCCCeEEEecCCCHHHHHHHHHHH
Confidence 4568999999999999999999999994 887732 22110 0011112257889999999998887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHH----HHHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~l----leaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++ +..+++.+..++|++||...++.
T Consensus 74 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~--------- 144 (255)
T PRK06463 74 EKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT--------- 144 (255)
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------
Confidence 4799999998751 2234667889999996555 45555556679999999877631
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-----CcHHHHHHHhcCCCceEEEcCCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-----~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.+|+..+.+.+.++.+ .|+++.+++|+.+-.+... ...+.+....... .
T Consensus 145 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---------~ 210 (255)
T PRK06463 145 -----AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK---------T 210 (255)
T ss_pred -----CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC---------C
Confidence 1123467999999999998888643 5899999999988544211 0011111111111 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 211 ~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 211 VLKTTGKPEDIANIVLFLASD---DARYITGQVIVADGGR 247 (255)
T ss_pred CcCCCcCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCe
Confidence 223456799999999987651 1234678888887764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=152.32 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|.||++++++|.++| ++|.+++ |+.++ .....++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~--------r~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCG--------RRAPE-----TVDGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe--------CChhh-----hhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 4898844 43321 0123467889999999988887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 70 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------- 140 (252)
T PRK07856 70 VERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR--------- 140 (252)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------
Confidence 3699999998641 1234567899999999999998754 2346899999986642
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|...|.+++.++.+. .+++.+++|+.+..+...... +.......... ...
T Consensus 141 ------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~ 205 (252)
T PRK07856 141 ------PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATV---------PLG 205 (252)
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcC---------CCC
Confidence 12335689999999999998876532 289999999998766321110 11111111111 122
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.+...+|+|++++.++.. ......|..+.+.++...+
T Consensus 206 ~~~~p~~va~~~~~L~~~---~~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 206 RLATPADIAWACLFLASD---LASYVSGANLEVHGGGERP 242 (252)
T ss_pred CCcCHHHHHHHHHHHcCc---ccCCccCCEEEECCCcchH
Confidence 356789999998876641 1235778899998775433
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=150.92 Aligned_cols=214 Identities=17% Similarity=0.123 Sum_probs=147.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcC----
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG---- 84 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~---- 84 (586)
|+|||++|+||++++++|+++| ++|+++++... .........+ ...++.++.+|+.|.+++.+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSE------EGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEE 73 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCch------hHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999 48888543220 0000000001 122478899999999988877753
Q ss_pred ---CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
+|+|||++|... ...+++..+++|+.++.++++++.. .+.++++++||.+.+..
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g------------ 141 (239)
T TIGR01830 74 LGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG------------ 141 (239)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC------------
Confidence 699999999752 1234678899999999999998875 45679999999754421
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
..+.+.|+.+|...|.+.+.++.+ .|++++++||+.+.++......+.+........+ ..-+.++
T Consensus 142 ---~~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 209 (239)
T TIGR01830 142 ---NAGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIP---------LGRFGTP 209 (239)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCC---------cCCCcCH
Confidence 123467999999998887776543 5899999999988765433222222222222211 1235679
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+|++++++.++.. ......|+.||++++
T Consensus 210 ~~~a~~~~~~~~~---~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASD---EASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCc---ccCCcCCCEEEeCCC
Confidence 9999999877741 123467889999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-16 Score=154.12 Aligned_cols=197 Identities=13% Similarity=0.036 Sum_probs=137.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+++|+||||+|+||.++++.|+++| ++|++. .|++++. . .+...+++.+.+|+.|.+++.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g-~~v~~~--------~r~~~~~--~-~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 69 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRG-YRVLAA--------CRKPDDV--A-RMNSLGFTGILLDLDDPESVERAADEVIA 69 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEE--------eCCHHHh--H-HHHhCCCeEEEeecCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999 488884 4433211 1 1112357889999999887765543
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHH----HHHHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~l----leaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|.+||+||... ...+++..+++|+.|+.++ ++++++.+.+++|++||...+.
T Consensus 70 ~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------- 138 (256)
T PRK08017 70 LTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------- 138 (256)
T ss_pred hcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc-----------
Confidence 3689999999642 2234567889999988775 6677777888999999974431
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhh---cCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC-ceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~---~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~ 224 (586)
+....+.|+.+|...|.+.+.+ ....+++++++|||.+..+.. +....+. .......+...+.+
T Consensus 139 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~--------~~~~~~~~~~~~~~~~~~~~~~ 206 (256)
T PRK08017 139 ----STPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT--------DNVNQTQSDKPVENPGIAARFT 206 (256)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh--------hcccchhhccchhhhHHHhhcC
Confidence 1134567999999999987654 334689999999987754321 1111111 11122223344678
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
++++|+++++..+++
T Consensus 207 ~~~~d~a~~~~~~~~ 221 (256)
T PRK08017 207 LGPEAVVPKLRHALE 221 (256)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999987
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-16 Score=154.26 Aligned_cols=197 Identities=16% Similarity=0.091 Sum_probs=135.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
|+|+||||+|+||.+++++|+++| ++|.+++ |++++. .....+ ..++..+.+|+.|.+++.++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATG--------RRQERLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999 4899844 432210 000001 2367889999999988877664
Q ss_pred ---CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.++.+++++ +++.+.+++|++||...+.
T Consensus 71 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 139 (248)
T PRK10538 71 EWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------- 139 (248)
T ss_pred HcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC-----------
Confidence 6899999998641 2234577899999996665554 4556778999999976531
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+.+.|+.+|...|.+.+.++. ..|+++++++||.+.|+..... +..-.... .. .+ + ...+
T Consensus 140 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~--~~---~~-~---~~~~ 206 (248)
T PRK10538 140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA--EK---TY-Q---NTVA 206 (248)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHH--Hh---hc-c---ccCC
Confidence 123456899999999999887753 3589999999999986642110 00000000 00 00 1 1134
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
+..+|+|++++.++.
T Consensus 207 ~~~~dvA~~~~~l~~ 221 (248)
T PRK10538 207 LTPEDVSEAVWWVAT 221 (248)
T ss_pred CCHHHHHHHHHHHhc
Confidence 689999999988775
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-16 Score=152.85 Aligned_cols=217 Identities=20% Similarity=0.118 Sum_probs=150.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHhcC-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~- 84 (586)
++++|+||||+|+||+++++.|+++|+ +|.+.+. |.... ..+...+ ..++..+.+|+.|.+++.+++++
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~-------~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 74 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYH-------QSEDAAEALADEL-GDRAIALQADVTDREQVQAMFATA 74 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcC-------CCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHH
Confidence 358999999999999999999999994 7776322 11110 0000111 13678899999999888877652
Q ss_pred -------CCEEEEcccCCC-------------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCC
Q 007866 85 -------ASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 85 -------~D~Vih~aa~~~-------------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~ 140 (586)
+|+|||+|+... ...++...+++|+.++.++++++. +.+..++|++||.....
T Consensus 75 ~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--- 151 (253)
T PRK08642 75 TEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN--- 151 (253)
T ss_pred HHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC---
Confidence 899999997521 122356779999999999999885 34557999999864321
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEc
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g 216 (586)
+..|.++|+.+|...|.+++.++.+ +|+++..++||.+-.+.... .-+...+......
T Consensus 152 ------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~------ 213 (253)
T PRK08642 152 ------------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATT------ 213 (253)
T ss_pred ------------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhcC------
Confidence 2245568999999999999988653 57999999999886542211 1122222222211
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+.+.+|+|+++..++... .....|+.+.+.++.
T Consensus 214 ---~~~~~~~~~~va~~~~~l~~~~---~~~~~G~~~~vdgg~ 250 (253)
T PRK08642 214 ---PLRKVTTPQEFADAVLFFASPW---ARAVTGQNLVVDGGL 250 (253)
T ss_pred ---CcCCCCCHHHHHHHHHHHcCch---hcCccCCEEEeCCCe
Confidence 1234788999999999877521 246788888887763
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=151.37 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=140.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||.+++++|+++|+ +|+++++.. .+. .....+ ...++.++.+|+.|++++.+++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTE--------ENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAI 75 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999999995 999854432 110 000000 1236788999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+++... ...+.+..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 76 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~------ 149 (239)
T PRK07666 76 EQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKG------ 149 (239)
T ss_pred HHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccC------
Confidence 5 6899999998752 123346789999999999988776 356779999999876521
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.+|...+.+++.++. +.|++++++||+.+.++..... .... ++ .
T Consensus 150 ---------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~-------~~~~------~~---~ 204 (239)
T PRK07666 150 ---------AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL-------GLTD------GN---P 204 (239)
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc-------cccc------cC---C
Confidence 13456799999999988877653 3689999999999987632110 0000 11 1
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
..++..+|+|+++..+++
T Consensus 205 ~~~~~~~~~a~~~~~~l~ 222 (239)
T PRK07666 205 DKVMQPEDLAEFIVAQLK 222 (239)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 235779999999999887
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=155.80 Aligned_cols=217 Identities=16% Similarity=0.077 Sum_probs=144.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|++++||||+|+||++++++|+++|+ +|.+.. .|.+++. .....+ ...++..+.+|+.|.+++.+++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~ 72 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY-TVAVNY-------QQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTA 72 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe-------CCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999995 776621 2222110 000000 123578899999999988877653
Q ss_pred -------CCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHHhC-------CCCEEEEecCccccccCCCC
Q 007866 85 -------ASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 85 -------~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~~~-------gvkr~I~~SS~~vyg~~~~~ 142 (586)
+|+|||+|+.... ..+.+..+++|+.++.++++++... +-+++|++||...+...
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~--- 149 (247)
T PRK09730 73 IDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA--- 149 (247)
T ss_pred HHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC---
Confidence 6899999997511 1234578999999998887766443 12469999998664211
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g 218 (586)
......|+.+|...|.+++.++. +.|++++++||+.++||... ...+..........+.
T Consensus 150 -----------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~------ 212 (247)
T PRK09730 150 -----------PGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPM------ 212 (247)
T ss_pred -----------CCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCC------
Confidence 01123699999999998887653 25899999999999998543 2222222222222211
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+.+|+|++++.++... .....|+.+.+.++
T Consensus 213 ---~~~~~~~dva~~~~~~~~~~---~~~~~g~~~~~~g~ 246 (247)
T PRK09730 213 ---QRGGQPEEVAQAIVWLLSDK---ASYVTGSFIDLAGG 246 (247)
T ss_pred ---CCCcCHHHHHHHHHhhcChh---hcCccCcEEecCCC
Confidence 11236899999998777521 23366778887764
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-16 Score=154.53 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=137.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHHhcC--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
+|+|+||||+|+||++++++|+++| ++|.++++.... +. .....+. ..++.++.+|+.|.+++.++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~-~~------~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDA-LQ------AFAARLPKAARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HH------HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999 599986554311 00 0001111 12688999999999988777643
Q ss_pred -----CCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 85 -----ASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 85 -----~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+|++||+||.... ..+++..+++|+.|+.++++ ++++.+.+++|++||...+..
T Consensus 74 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~--------- 144 (257)
T PRK07024 74 AAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRG--------- 144 (257)
T ss_pred HhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC---------
Confidence 7999999997521 13467889999999999776 555667789999999765421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
......|+.+|...|.+.+.++ ..+|++++++||+.+.++.... ... ....+
T Consensus 145 ------~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------~~~---------~~~~~ 199 (257)
T PRK07024 145 ------LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------NPY---------PMPFL 199 (257)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------CCC---------CCCCc
Confidence 1234579999999999987764 4478999999999998763210 000 00113
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
+..+|+|+.++.+++
T Consensus 200 ~~~~~~a~~~~~~l~ 214 (257)
T PRK07024 200 MDADRFAARAARAIA 214 (257)
T ss_pred cCHHHHHHHHHHHHh
Confidence 579999999998887
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=154.91 Aligned_cols=220 Identities=13% Similarity=0.059 Sum_probs=151.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|++.++.. .... ......+ ...++..+.+|+.|.+++.+++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 119 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPV------EEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLV 119 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCc------chhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHH
Confidence 345899999999999999999999999 5888843321 1100 0000001 1235778999999998877665
Q ss_pred c-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCC
Q 007866 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|++||+|+... ...++...+++|+.++.++++++... .-.++|++||...+..
T Consensus 120 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~------- 192 (294)
T PRK07985 120 HEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP------- 192 (294)
T ss_pred HHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC-------
Confidence 4 4799999998631 23456788999999999999988653 1258999999987631
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
......|+.+|+..+.+.+.++.+ +|+++.+++|+.+.++.... ............ ..
T Consensus 193 --------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~---------~~ 255 (294)
T PRK07985 193 --------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQ---------TP 255 (294)
T ss_pred --------CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhcc---------CC
Confidence 122457999999999998887654 58999999999999885311 111112211111 11
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+...+|+|.++..++.. ......|+.+.+.++.
T Consensus 256 ~~r~~~pedva~~~~fL~s~---~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 256 MKRAGQPAELAPVYVYLASQ---ESSYVTAEVHGVCGGE 291 (294)
T ss_pred CCCCCCHHHHHHHHHhhhCh---hcCCccccEEeeCCCe
Confidence 22356789999999877651 1234668888887764
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=150.34 Aligned_cols=218 Identities=13% Similarity=0.044 Sum_probs=147.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.++.++||||+|+||++++++|+++|+ +|++... +..... .....+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCG-------PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD 73 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC-------CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 458999999999999999999999995 7766221 111100 000000 12356778999999988877664
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... +..+++.++++|+.++.++.++ +.+.+.+++|++||.....
T Consensus 74 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 145 (246)
T PRK12938 74 KVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-------- 145 (246)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC--------
Confidence 5799999999752 2345678889999997775554 4456778999999975431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|...+.+.+.++. ..|+++.+++|+.+.++......+.......... ...
T Consensus 146 -------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~---------~~~ 209 (246)
T PRK12938 146 -------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI---------PVR 209 (246)
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcC---------Ccc
Confidence 123456899999988887776653 2689999999999987754333333333332221 122
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+|++.++..++.- ......|+.+.+.++.
T Consensus 210 ~~~~~~~v~~~~~~l~~~---~~~~~~g~~~~~~~g~ 243 (246)
T PRK12938 210 RLGSPDEIGSIVAWLASE---ESGFSTGADFSLNGGL 243 (246)
T ss_pred CCcCHHHHHHHHHHHcCc---ccCCccCcEEEECCcc
Confidence 345689999998876641 1234678888887653
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=151.09 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=150.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++|+||||+|+||.+++++|+++| ++|+++++ +... .....+ ...++..+.+|+.|.+++.++++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r--------~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGR--------SEPS-ETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcC--------chHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 357999999999999999999999999 48988443 2210 000000 12357889999999998876653
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+ ..++|++||...+.+.
T Consensus 73 ~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 147 (248)
T TIGR01832 73 SAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG----- 147 (248)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC-----
Confidence 4899999999752 1234667789999999999998753 33 4689999998876421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (586)
.....|+.+|+..+.+.+.++.+ +|+++++++||.+..+...... .......... .
T Consensus 148 ----------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~ 208 (248)
T TIGR01832 148 ----------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER---------I 208 (248)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc---------C
Confidence 22347999999999998888654 5899999999999876432111 0011111110 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+...++..+|+|++++.++... .....|.++.+.++
T Consensus 209 ~~~~~~~~~dva~~~~~l~s~~---~~~~~G~~i~~dgg 244 (248)
T TIGR01832 209 PAGRWGTPDDIGGPAVFLASSA---SDYVNGYTLAVDGG 244 (248)
T ss_pred CCCCCcCHHHHHHHHHHHcCcc---ccCcCCcEEEeCCC
Confidence 1245788999999998877511 23455777777654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=148.72 Aligned_cols=208 Identities=13% Similarity=0.056 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
++++|+||||+|+||++++++|+++| ++|++++ |.+.+. .....+. ..++..+.+|+.|.+++.++++
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEG-YKVAITA--------RDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEee--------CCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 5899944 432210 0001111 1468889999999998877765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+++... ...+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------- 145 (237)
T PRK07326 76 IVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN---------- 145 (237)
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------
Confidence 6899999998752 1223567899999999999888764 2456899999976542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.+|+..+.+.+.+. ...|++++++||+.+.++..... + ... ....
T Consensus 146 -----~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~------------~----~~~--~~~~ 202 (237)
T PRK07326 146 -----FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT------------P----SEK--DAWK 202 (237)
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc------------c----chh--hhcc
Confidence 12345679999999888887763 33689999999999876532110 0 000 0113
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..+|++++++.+++. .+........+.++++
T Consensus 203 ~~~~d~a~~~~~~l~~----~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 203 IQPEDIAQLVLDLLKM----PPRTLPSKIEVRPSRP 234 (237)
T ss_pred CCHHHHHHHHHHHHhC----CccccccceEEecCCC
Confidence 6789999999998873 2444555666665544
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=148.33 Aligned_cols=217 Identities=18% Similarity=0.128 Sum_probs=148.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++++||||+|+||++++++|.++|+ +|++..... +.. ....+.+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGS-------AAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCC-------HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999999999995 776632211 100 0000000 12467889999999998888776
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++.+. ...++|++||...+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------- 145 (245)
T PRK12937 76 AAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL---------- 145 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------
Confidence 5899999999752 12345677899999999999888654 235899999876542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC-CCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~-~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+.+.|+.+|...|.+++.++.+ .|+++++++|+.+-.+.. ....+.......+.. ....
T Consensus 146 -----~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~~ 211 (245)
T PRK12937 146 -----PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLA---------PLER 211 (245)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcC---------CCCC
Confidence 1234578999999999999877543 579999999998766531 111122222222221 1223
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+.+++|+++++..++.. ......|+.+++.++
T Consensus 212 ~~~~~d~a~~~~~l~~~---~~~~~~g~~~~~~~g 243 (245)
T PRK12937 212 LGTPEEIAAAVAFLAGP---DGAWVNGQVLRVNGG 243 (245)
T ss_pred CCCHHHHHHHHHHHcCc---cccCccccEEEeCCC
Confidence 45789999998877752 123466888888764
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=157.49 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=125.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||.+++++|+++| ++|++.++. .++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRN--------LKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFV 74 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999 589885443 2210 000001 1236788999999999888776
Q ss_pred c-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CC--CCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--vkr~I~~SS~~vyg~~~~ 141 (586)
+ ++|+|||+||... ...+++.++++|+.|+.++++++.. .+ ..|+|++||...++....
T Consensus 75 ~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~ 154 (322)
T PRK07453 75 DDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELG 154 (322)
T ss_pred HHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccC
Confidence 4 3899999999642 1234678899999999999887764 22 359999999887642100
Q ss_pred CC--CC--CCCC----------------cccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 007866 142 DI--HN--GDET----------------LTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (586)
Q Consensus 142 ~~--~~--~~E~----------------~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G~ 193 (586)
.. .+ .+.+ ...+..|..+|+.||...+.+.+.++++ .|++++++|||.+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 155 GKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT 230 (322)
T ss_pred CccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence 00 00 0000 0113466789999999887777666544 4899999999999864
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=151.70 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=148.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++++||||+|.||++++++|+++|+ +|.+++.. ..... .....+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHS-------DEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------ChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 57999999999999999999999995 88773221 11100 000000 12468889999999988776664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCC-----CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~g-----vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
.+|+|||+||... ...++...+++|+.++.++++++...- -+++|++||.....
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~-------- 145 (256)
T PRK12743 74 LIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT-------- 145 (256)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC--------
Confidence 4799999999752 123467889999999999998876532 25899999975321
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|...+.+++.++. ..|++++.++||.+.++.....-+........+.+ ..
T Consensus 146 -------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~---------~~ 209 (256)
T PRK12743 146 -------PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIP---------LG 209 (256)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhcCC---------CC
Confidence 234567899999999999887754 35899999999999987533211111111111111 11
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+.+.+|+|.++..++.. ......|+.+.+.++.
T Consensus 210 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 210 RPGDTHEIASLVAWLCSE---GASYTTGQSLIVDGGF 243 (256)
T ss_pred CCCCHHHHHHHHHHHhCc---cccCcCCcEEEECCCc
Confidence 245789999999877651 1234678888888764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=149.14 Aligned_cols=218 Identities=14% Similarity=0.078 Sum_probs=149.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+.+++++||||+|+||.+++++|+++| ++|+++++ ++++. .+...+ ...++.++.+|++|.+++.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 77 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAAR--------TESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGL 77 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 3457899999999999999999999999 59999444 32210 000001 123578889999999988776
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++ ++|+|||+|+... ...++...+++|+.++.++.+++.. .+.+++|++||.....
T Consensus 78 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 152 (263)
T PRK07814 78 AGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL----- 152 (263)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----
Confidence 64 5899999998641 2345778899999999999999864 4557899999974421
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+..+.+.|+.+|...|.+.+.++.+ .+++++.++|+.+..+..... -..+........
T Consensus 153 ----------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 214 (263)
T PRK07814 153 ----------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKAT-------- 214 (263)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcC--------
Confidence 1234568999999999998887653 258899999998865432110 011111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
........+|+|++++.++... .....|+.+.+.++
T Consensus 215 -~~~~~~~~~~va~~~~~l~~~~---~~~~~g~~~~~~~~ 250 (263)
T PRK07814 215 -PLRRLGDPEDIAAAAVYLASPA---GSYLTGKTLEVDGG 250 (263)
T ss_pred -CCCCCcCHHHHHHHHHHHcCcc---ccCcCCCEEEECCC
Confidence 1123457899999999877511 23456778777664
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=150.85 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=151.0
Q ss_pred CCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 3 ~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+..+.+++|+||||+|.||..++++|+++|+ +|.++++.. ......+.+ ...++.++.+|+.|.+++.+
T Consensus 10 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 10 FFSLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT--------NWDETRRLIEKEGRKVTFVQVDLTKPESAEK 80 (258)
T ss_pred cccCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc--------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 3345678999999999999999999999994 888844321 100011111 12457889999999998887
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ ++|++||+|+... ...+++..+++|+.++.++.+++. +.+.+++|++||...+.+
T Consensus 81 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 156 (258)
T PRK06935 81 VVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG---- 156 (258)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC----
Confidence 775 5799999999741 133466788999999877776554 455679999999877631
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (586)
......|+.+|+..|.+.+.++.+ .|+++++++||.+..+...... +.........
T Consensus 157 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK06935 157 -----------GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKR-------- 217 (258)
T ss_pred -----------CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhc--------
Confidence 123458999999999998888653 5899999999998766422110 1111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+...+|+|.++..++.. ......|+++.+.++.
T Consensus 218 -~~~~~~~~~~dva~~~~~l~s~---~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 218 -IPAGRWGEPDDLMGAAVFLASR---ASDYVNGHILAVDGGW 255 (258)
T ss_pred -CCCCCCCCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCe
Confidence 1123466789999998866541 1235678888887753
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-15 Score=144.84 Aligned_cols=212 Identities=12% Similarity=0.054 Sum_probs=148.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH-HHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-~~l~~~l~~ 84 (586)
+++++++||||+|+||++++++|.++|+ +|++.+ |.+... ...++..+.+|+.|. +++.+.+.+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~-~v~~~~--------r~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 67 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGA-QVYGVD--------KQDKPD------LSGNFHFLQLDLSDDLEPLFDWVPS 67 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCC-EEEEEe--------CCcccc------cCCcEEEEECChHHHHHHHHHhhCC
Confidence 3568999999999999999999999995 888844 332211 123578899999987 444455567
Q ss_pred CCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCCccc
Q 007866 85 ASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 85 ~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
+|+|||+|+... ...+++..+++|+.++.++++++.. .+-+++|++||...+..
T Consensus 68 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 133 (235)
T PRK06550 68 VDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA-------------- 133 (235)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC--------------
Confidence 899999998531 1234677899999999999988753 34568999999876521
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-c-HHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-L-VPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~-~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
......|+.+|...+.+.+.++.+ +|+++++++|+.+.++.... . .....+...... ....+...
T Consensus 134 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 203 (235)
T PRK06550 134 -GGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET---------PIKRWAEP 203 (235)
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC---------CcCCCCCH
Confidence 123457999999988887776543 58999999999998775321 1 111222222211 12346678
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+|+|++++.++... .....|+++.+.++.
T Consensus 204 ~~~a~~~~~l~s~~---~~~~~g~~~~~~gg~ 232 (235)
T PRK06550 204 EEVAELTLFLASGK---ADYMQGTIVPIDGGW 232 (235)
T ss_pred HHHHHHHHHHcChh---hccCCCcEEEECCce
Confidence 99999999877411 234567788887653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=149.74 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=151.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|.||++++++|+++| ++|.+.++.. .+. .....+ ...++..+.+|+.|.+++.+++
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITA--------ERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCH--------HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 356899999999999999999999999 4888854432 110 000001 1235677889999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... +..+++..+++|+.++.++++++.. .+..++|++||.....
T Consensus 78 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 150 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL------- 150 (254)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc-------
Confidence 4 3799999999641 2345677899999999888887654 4567999999975431
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++||.+..+..... .+.+....... .
T Consensus 151 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~---------~ 213 (254)
T PRK08085 151 --------GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKR---------T 213 (254)
T ss_pred --------CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhc---------C
Confidence 1234568999999999999988643 589999999999988753221 12222222221 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|.++..++.. ......|+...+.++.
T Consensus 214 p~~~~~~~~~va~~~~~l~~~---~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 214 PAARWGDPQELIGAAVFLSSK---ASDFVNGHLLFVDGGM 250 (254)
T ss_pred CCCCCcCHHHHHHHHHHHhCc---cccCCcCCEEEECCCe
Confidence 223467799999988876641 1345677777776653
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=148.63 Aligned_cols=232 Identities=13% Similarity=0.062 Sum_probs=148.8
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~ 77 (586)
|......+++++||||+|+||.++++.|+++|+ +|.+++... .+.... ....+.+ ...++..+.+|+.|.++
T Consensus 1 ~~~~~l~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNS----AASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CCCCCCCCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCC----ccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 544344568999999999999999999999994 765533221 111110 0000001 12357889999999999
Q ss_pred HHHHhc-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCC
Q 007866 78 IKKVLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~ 141 (586)
+.++++ ++|++||+||.. ....+++..+++|+.++.++++++... .-.++++++|..+...
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~--- 152 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF--- 152 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc---
Confidence 887764 479999999974 123346778999999999999988653 1246676643332210
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~ 217 (586)
......|+.+|+..|.+.+.++.+ .|+++++++||.+.++...+. .+....... . .....
T Consensus 153 ------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~--~--~~~~~ 216 (257)
T PRK12744 153 ------------TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHK--T--AAALS 216 (257)
T ss_pred ------------CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhccc--c--ccccc
Confidence 122467999999999999988654 479999999999976632110 010000000 0 00011
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+.....+.+.+|+|.++..+++. .....|+++++.++..
T Consensus 217 ~~~~~~~~~~~dva~~~~~l~~~----~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 217 PFSKTGLTDIEDIVPFIRFLVTD----GWWITGQTILINGGYT 255 (257)
T ss_pred ccccCCCCCHHHHHHHHHHhhcc----cceeecceEeecCCcc
Confidence 11122478899999999988871 1234688999987643
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=155.11 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=144.3
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~ 77 (586)
|+...+.+++|+||||+|.||++++++|.++| ++|++++ |++++. .....+ ...++..+.+|+.|.++
T Consensus 1 ~~~~~l~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~--------R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 1 MMLKPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLA--------RGEEGLEALAAEIRAAGGEALAVVADVADAEA 71 (334)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHH
Confidence 55455667899999999999999999999999 5898844 332210 000000 12357889999999998
Q ss_pred HHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHH----HHHHHhCCCCEEEEecCccccccC
Q 007866 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNV----VTACRECKVRRLVYNSTADVVFDG 139 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~l----leaa~~~gvkr~I~~SS~~vyg~~ 139 (586)
+.++++ ++|++||+|+... ...+.+..+++|+.|+.++ ++.+++.+..++|++||...+..
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~- 150 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS- 150 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC-
Confidence 887754 5899999999751 1234566788887776664 44555556679999999987631
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
......|+.+|...+.+.+.++. ..++++++++|+.+-.|... ...... +.
T Consensus 151 --------------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~----~~~~~~--~~---- 206 (334)
T PRK07109 151 --------------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD----WARSRL--PV---- 206 (334)
T ss_pred --------------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh----hhhhhc--cc----
Confidence 12346899999998888776542 24799999999998765311 110000 00
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
.......+...+|+|++++.+++ .+ .+.+++++
T Consensus 207 --~~~~~~~~~~pe~vA~~i~~~~~-----~~---~~~~~vg~ 239 (334)
T PRK07109 207 --EPQPVPPIYQPEVVADAILYAAE-----HP---RRELWVGG 239 (334)
T ss_pred --cccCCCCCCCHHHHHHHHHHHHh-----CC---CcEEEeCc
Confidence 11122346789999999999887 22 34566655
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=152.68 Aligned_cols=197 Identities=17% Similarity=0.095 Sum_probs=136.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
|+|+||||+|+||++++++|+++| ++|.+.++. ..+. .....+ ...++.++.+|+.|.+++.++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVN--------EEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 579999999999999999999999 588885433 2210 000000 12467889999999988877764
Q ss_pred -----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||.... ..+.+..+++|+.++.++.++ +++.+..++|++||...+.
T Consensus 72 ~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~---------- 141 (270)
T PRK05650 72 EEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM---------- 141 (270)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------
Confidence 58999999997521 123455788998888776665 4566778999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+....+.|+.+|+..+.+.+.++.+ .|+++++++|+.+.++..... .+........ ...
T Consensus 142 -----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----------~~~ 206 (270)
T PRK05650 142 -----QGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK----------LLE 206 (270)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHH----------Hhh
Confidence 1234568999999977766655443 589999999999987643211 1111111100 001
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
..+++++|+|++++.+++
T Consensus 207 ~~~~~~~~vA~~i~~~l~ 224 (270)
T PRK05650 207 KSPITAADIADYIYQQVA 224 (270)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 235789999999999987
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=149.71 Aligned_cols=212 Identities=17% Similarity=0.077 Sum_probs=150.1
Q ss_pred EEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhcC---CC
Q 007866 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLEG---AS 86 (586)
Q Consensus 12 lVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~---~D 86 (586)
+||||+|+||++++++|+++| ++|++.++ +++.. .....+ ...+++++.+|+.|.+++.++++. +|
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIASR--------SRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 599999999999999999999 58988444 32210 000001 124678899999999999988864 79
Q ss_pred EEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 87 TVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 87 ~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
++||+++... ...+++..+++|+.++.++.++....+.+++|++||...+. +..+.+.
T Consensus 72 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~---------------~~~~~~~ 136 (230)
T PRK07041 72 HVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR---------------PSASGVL 136 (230)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC---------------CCCcchH
Confidence 9999999742 12357788999999999999977666678999999998763 1234568
Q ss_pred HHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~~----~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (586)
|+.+|...|.+.+.++.+ .++++++++|+.+-.+.... ....+.....+..+ ...+...+|+|+++
T Consensus 137 Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~ 207 (230)
T PRK07041 137 QGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP---------ARRVGQPEDVANAI 207 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC---------CCCCcCHHHHHHHH
Confidence 999999999999887654 25889999998875542111 00111221211111 11234689999999
Q ss_pred HHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 235 VCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 235 ~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+++ .....|+.|++.+++++
T Consensus 208 ~~l~~-----~~~~~G~~~~v~gg~~~ 229 (230)
T PRK07041 208 LFLAA-----NGFTTGSTVLVDGGHAI 229 (230)
T ss_pred HHHhc-----CCCcCCcEEEeCCCeec
Confidence 98886 34567899999887653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=150.58 Aligned_cols=221 Identities=18% Similarity=0.180 Sum_probs=145.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++++||||+|+||++++++|+++| ++|+++++. .+.. .....+ ...++..+.+|+.|++++.++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYN--------EETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 5799999999999999999999999 599985443 2110 000011 12357789999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+.+..+++|+.++.++++++... + -.++|++||...+..
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 145 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVG------- 145 (256)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccC-------
Confidence 4799999998751 12235678899999988877766542 2 358999999765421
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc--CCCceE----EEc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKF----IIG 216 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~--~g~~~~----i~g 216 (586)
......|+.+|...|.+++.++. ..|+++++++|+.+.++.... +..... .+.+.. .+-
T Consensus 146 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T PRK08643 146 --------NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFD----IAHQVGENAGKPDEWGMEQFA 213 (256)
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhH----HHhhhccccCCCchHHHHHHh
Confidence 12346799999999888777653 368999999999997763211 111000 000000 000
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.......+...+|+|.++..++.. ......|+.+.+.++.
T Consensus 214 ~~~~~~~~~~~~~va~~~~~L~~~---~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 214 KDITLGRLSEPEDVANCVSFLAGP---DSDYITGQTIIVDGGM 253 (256)
T ss_pred ccCCCCCCcCHHHHHHHHHHHhCc---cccCccCcEEEeCCCe
Confidence 001122356789999998877641 1345778888887654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=147.48 Aligned_cols=194 Identities=13% Similarity=0.092 Sum_probs=138.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.|++++||||+|.||+.++++|+++|+ +|+++++. +.+. .....+ ...++.++.+|++|.+++.++++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARS--------QDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC--------HHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999995 99995443 2210 000000 12467889999999998877765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+.+..+++|+.++.++++++ .+.+.+++|++||...+++
T Consensus 76 ~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------- 148 (241)
T PRK07454 76 ELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNA------- 148 (241)
T ss_pred HHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcC-------
Confidence 4899999999752 22356777899999988877765 4455679999999987632
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..+..+|+.+|...+.+.+.++ ...|++++++||+.+-.+..... ...... ...
T Consensus 149 --------~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~-----------~~~~~~----~~~ 205 (241)
T PRK07454 149 --------FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTE-----------TVQADF----DRS 205 (241)
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccc-----------cccccc----ccc
Confidence 2345689999999999887764 23589999999999876532110 000000 012
Q ss_pred cccchhHHHHHHHHHHH
Q 007866 223 DFTYVENVAHAHVCAAE 239 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale 239 (586)
..+..+|+|++++.++.
T Consensus 206 ~~~~~~~va~~~~~l~~ 222 (241)
T PRK07454 206 AMLSPEQVAQTILHLAQ 222 (241)
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 35789999999998887
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=151.21 Aligned_cols=197 Identities=17% Similarity=0.090 Sum_probs=137.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
||+++||||+|+||++++++|+++| ++|.+++ |+++.. .+.......++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYD--------INEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe--------CCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999844 433210 01111123468899999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++. ..+..++|++||...+..
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 142 (260)
T PRK08267 72 AATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYG--------- 142 (260)
T ss_pred HHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcC---------
Confidence 3699999999752 123467889999999999988874 345678999999755321
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
......|+.+|+..+.+.+.++. ..|+++++++|+.+-.+.............. ....-.
T Consensus 143 ------~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~-----------~~~~~~ 205 (260)
T PRK08267 143 ------QPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGST-----------KRLGVR 205 (260)
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhH-----------hhccCC
Confidence 12345799999999998888753 3589999999999865432210000000000 001113
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
+..+|+|++++.+++
T Consensus 206 ~~~~~va~~~~~~~~ 220 (260)
T PRK08267 206 LTPEDVAEAVWAAVQ 220 (260)
T ss_pred CCHHHHHHHHHHHHh
Confidence 557999999998886
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=154.91 Aligned_cols=212 Identities=16% Similarity=0.095 Sum_probs=139.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++|+||||+|+||++++++|+++|+ +|+++ .|++++.. ....+ .++.++.+|+.|.+++.++++
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~--------~R~~~~~~~~~~~l--~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVP--------ARRPDVAREALAGI--DGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE--------eCCHHHHHHHHHHh--hhCeEEEccCCCHHHHHHHHHH
Confidence 3568999999999999999999999995 89884 44332110 00011 237889999999998877663
Q ss_pred ------CCCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+.+..+++|+.++.++.+ .+++.+..|+|++||........... ..+.
T Consensus 93 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~-~~~~ 171 (315)
T PRK06196 93 FLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWD-DPHF 171 (315)
T ss_pred HHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCcc-ccCc
Confidence 5899999999752 233467889999999655555 45556667999999976532111000 0111
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHH-HH--HHhcCCCceEEEcCCCcc-
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPL-LV--NLAKPGWTKFIIGSGENM- 221 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~-l~--~~~~~g~~~~i~g~g~~~- 221 (586)
.. +..+...|+.||...+.+.+.++. ..|++++++|||.+.++........ .. ...... +...
T Consensus 172 ~~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--------~~~~~ 241 (315)
T PRK06196 172 TR--GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEH--------GNPID 241 (315)
T ss_pred cC--CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhh--------hhhhh
Confidence 11 234557899999999998876643 3689999999999998854322110 00 000000 0000
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
..+...+|.|.+++.++.
T Consensus 242 ~~~~~~~~~a~~~~~l~~ 259 (315)
T PRK06196 242 PGFKTPAQGAATQVWAAT 259 (315)
T ss_pred hhcCCHhHHHHHHHHHhc
Confidence 024568999999998775
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=147.90 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=151.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|.||+++++.|.++| ++|+++++..+. + + .....+.......++..+.+|+.|.+++.++++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~-~-~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADA-L-A-QARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHH-H-H-HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 589885443210 0 0 000001011113467889999999888766554
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||.. ....+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~---------- 152 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT---------- 152 (257)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC----------
Confidence 479999999974 1234567889999999999988874 35567999999987653
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|...+.+++.++. ..|++++.++|+.+.++..... .+.+........+ ..
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~---------~~ 218 (257)
T PRK09242 153 -----HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTP---------MR 218 (257)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCC---------CC
Confidence 123456799999999999887753 2589999999999988754322 1222222222111 12
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
-+...+|++.++..++.. ......|+.+.+.++
T Consensus 219 ~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~~gg 251 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMP---AASYITGQCIAVDGG 251 (257)
T ss_pred CCcCHHHHHHHHHHHhCc---ccccccCCEEEECCC
Confidence 234589999999877641 112356788888664
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=152.29 Aligned_cols=189 Identities=16% Similarity=0.028 Sum_probs=134.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++|+||||+|.||++++++|+++| ++|.+. .|++++. .....+ .++.++.+|+.|++++.++++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~--------~r~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALG-ARVAIG--------DLDEALAKETAAEL--GLVVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEE--------ECCHHHHHHHHHHh--ccceEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 588884 4433210 000111 147889999999988766553
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+.+..+++|+.|+.++.+++ ++.+.+++|++||.+.+.
T Consensus 73 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 142 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI---------- 142 (273)
T ss_pred HHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------
Confidence 4799999999751 12245678899999888877655 456778999999987642
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.+|...+.+.+.+.. ..|+++++++|+.+-.+... +. .+.....+
T Consensus 143 -----~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~------------~~------~~~~~~~~ 199 (273)
T PRK07825 143 -----PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA------------GT------GGAKGFKN 199 (273)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc------------cc------ccccCCCC
Confidence 123456899999988776655432 36899999999987543211 00 01112357
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
+..+|+|++++.+++
T Consensus 200 ~~~~~va~~~~~~l~ 214 (273)
T PRK07825 200 VEPEDVAAAIVGTVA 214 (273)
T ss_pred CCHHHHHHHHHHHHh
Confidence 889999999999887
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-15 Score=146.23 Aligned_cols=193 Identities=15% Similarity=0.035 Sum_probs=136.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
+++++||||+|+||++++++|+++| ++|.+.++... +..+ ...+.......++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRTD----RLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHH----HHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999 58888443321 0000 0000111113467889999999988876654
Q ss_pred ----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||.... .......+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 77 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 147 (248)
T PRK08251 77 DELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL--------- 147 (248)
T ss_pred HHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC---------
Confidence 58999999997521 23346678999999998888764 4577899999997654210
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..+...|+.||...+.+.+.++. ..++++++++|+.+.++.... . + . ....+
T Consensus 148 -----~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--------~--~-------~---~~~~~ 202 (248)
T PRK08251 148 -----PGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK--------A--K-------S---TPFMV 202 (248)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc--------c--c-------c---CCccC
Confidence 12356899999999888876653 257999999999997653210 0 0 0 11256
Q ss_pred chhHHHHHHHHHHH
Q 007866 226 YVENVAHAHVCAAE 239 (586)
Q Consensus 226 ~v~Dva~ai~~ale 239 (586)
..+|.|++++.+++
T Consensus 203 ~~~~~a~~i~~~~~ 216 (248)
T PRK08251 203 DTETGVKALVKAIE 216 (248)
T ss_pred CHHHHHHHHHHHHh
Confidence 79999999999887
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=148.98 Aligned_cols=219 Identities=19% Similarity=0.145 Sum_probs=144.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc------
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE------ 83 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~------ 83 (586)
+|+||||+|+||+++++.|+++| ++|+++++.....+.... ..+........+..+.+|+.|.+++.++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDINDAAGLDAFA--AEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHH--HHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999 599985443100000000 000000011224457899999998876664
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHH----HHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQ----GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~----gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++|+|||+|+... ...+....+++|+. +++++++++++.+.+++|++||...++.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~------------- 144 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA------------- 144 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC-------------
Confidence 5799999999752 12235667788888 7788888888888889999999987632
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHH-----HHHHHhcCCCceEEEcCCCcc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVP-----LLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~-----~l~~~~~~g~~~~i~g~g~~~ 221 (586)
......|+.+|...+.+.+.++.+ .+++++.++|+.+.++....... .....+.++ .+.
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~~ 213 (251)
T PRK07069 145 --EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARG---------VPL 213 (251)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhcc---------CCC
Confidence 123457999999999998876432 35899999999998875332111 111111111 122
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..+.+++|+|++++.++.. ......|+.+.+.++
T Consensus 214 ~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~~~g 247 (251)
T PRK07069 214 GRLGEPDDVAHAVLYLASD---ESRFVTGAELVIDGG 247 (251)
T ss_pred CCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCC
Confidence 3456799999999876541 123456777666554
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=146.68 Aligned_cols=187 Identities=15% Similarity=0.094 Sum_probs=136.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
|++++||||+|+||++++++|+++| ++|.++++. ++.. .+.. ...++.++.+|+.|.+++.+++++
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G-~~V~~~~r~--------~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 69 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG-WQVIACGRN--------QSVLDELHT--QSANIFTLAFDVTDHPGTKAALSQLP 69 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEECC--------HHHHHHHHH--hcCCCeEEEeeCCCHHHHHHHHHhcc
Confidence 4789999999999999999999999 589985443 2210 0000 123578899999999999988865
Q ss_pred --CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 85 --ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 85 --~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
.|.+||+||... ...+.+..+++|+.++.++++++... +-+++|++||..... +
T Consensus 70 ~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~---------------~ 134 (240)
T PRK06101 70 FIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL---------------A 134 (240)
T ss_pred cCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc---------------C
Confidence 589999998541 12234578999999999999998763 235799998864321 1
Q ss_pred CCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHH
Q 007866 154 WKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (586)
......|+.+|...|.+.+.++ ...|++++++|||.++++..... .. + ....+..+|+
T Consensus 135 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~------------~~----~---~~~~~~~~~~ 195 (240)
T PRK06101 135 LPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN------------TF----A---MPMIITVEQA 195 (240)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC------------CC----C---CCcccCHHHH
Confidence 1234589999999999988765 34689999999999998743210 00 0 0123679999
Q ss_pred HHHHHHHHH
Q 007866 231 AHAHVCAAE 239 (586)
Q Consensus 231 a~ai~~ale 239 (586)
|+.++.+++
T Consensus 196 a~~i~~~i~ 204 (240)
T PRK06101 196 SQEIRAQLA 204 (240)
T ss_pred HHHHHHHHh
Confidence 999999888
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=151.68 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=119.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
||+++||||+|+||+++++.|.++| ++|++++ |+..+ . ..+...++.++.+|+.|.+++.++++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G-~~V~~~~--------r~~~~--~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATA--------RKAED--V-EALAAAGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC-CEEEEEe--------CCHHH--H-HHHHHCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999844 43221 0 01112356788999999988877663
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|+|||+||... +..+++..+++|+.|+.++++++.. .+..++|++||...+..
T Consensus 69 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------ 136 (274)
T PRK05693 69 EHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLV------------ 136 (274)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCC------------
Confidence 5799999999651 2234677899999999999988743 24468999999765421
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
.....+|+.+|...|.+.+.++. .+|+++++++||.+..+
T Consensus 137 ---~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 137 ---TPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 12346799999999998776643 36899999999999765
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=147.71 Aligned_cols=219 Identities=12% Similarity=0.100 Sum_probs=152.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcE-EEEecCCcccccCCCCCCCC-CCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCI-VRVTDSTQSLQLDPSESNSL-LPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~-V~~~d~~~~~~l~r~~~~~~-~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.+++++|+||||+|.||++++++|.++|. + |+++++ .+++.. ....+ ...++.++.+|+.|++++.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGR--------NAEKGEAQAAELEALGAKAVFVQADLSDVEDCRR 73 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcC--------CHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 35678999999999999999999999995 6 888444 322100 00000 12357788999999998887
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~ 141 (586)
+++ ++|+|||+++... ....++..+++|+.++.++++++... + ..++|++||...++..
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-- 151 (260)
T PRK06198 74 VVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-- 151 (260)
T ss_pred HHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--
Confidence 764 4799999999752 12234667899999999998887542 2 3579999999876421
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWT 211 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~-------~~~~l~~~~~~g~~ 211 (586)
.....|+.+|...|.+.+.++. ..+++++.++|+.+.++.... ....+.......
T Consensus 152 -------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (260)
T PRK06198 152 -------------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAAT-- 216 (260)
T ss_pred -------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhcc--
Confidence 2346799999999999887653 357999999999999875321 111122222111
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.....+++.+|+++++..++... .....|+.+++.++.
T Consensus 217 -------~~~~~~~~~~~~a~~~~~l~~~~---~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 217 -------QPFGRLLDPDEVARAVAFLLSDE---SGLMTGSVIDFDQSV 254 (260)
T ss_pred -------CCccCCcCHHHHHHHHHHHcChh---hCCccCceEeECCcc
Confidence 12345678999999999876521 234678888887754
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=146.89 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=152.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|.++| ++|++.++.. ... .....+ ...++..+.+|+.|.+++.+++
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~ 79 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINA--------DAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 347899999999999999999999999 4888854332 100 000000 1235778899999999887665
Q ss_pred c-------CCCEEEEcccCCCC------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 83 E-------GASTVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|+|||+|+.... ..+++..+++|+.++.++++++. +.+..++|++||.+...
T Consensus 80 ~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------- 151 (255)
T PRK06113 80 DFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-------- 151 (255)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC--------
Confidence 4 47999999997521 23456668999999999999886 33456999999976531
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.+|+..+.+++.++. ..|+++.++.||.+-.+..... .+.+.....+.. ..
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~ 215 (255)
T PRK06113 152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PI 215 (255)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcC---------CC
Confidence 123456799999999999988764 3579999999999876543221 222222222211 12
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+...+|+++++..++.. ......|+.+++.++..
T Consensus 216 ~~~~~~~d~a~~~~~l~~~---~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 216 RRLGQPQDIANAALFLCSP---AASWVSGQILTVSGGGV 251 (255)
T ss_pred CCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCCcc
Confidence 2356789999999987751 12345789999988753
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-15 Score=147.09 Aligned_cols=218 Identities=12% Similarity=0.054 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++|+||||+|+||++++++|+++| ++|+++++. ++.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAG-AHVLVNGRN--------AATLEAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeCC--------HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 457899999999999999999999999 599995443 2210 000000 1235789999999999887776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ..|+|||+++... ...+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 80 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------- 152 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV------- 152 (256)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc-------
Confidence 5 3699999999751 1234667899999999999966643 5678999999986542
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.+|...+.+++.++.+ .|+++.+++|+.+.++...... +.+........
T Consensus 153 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~--------- 215 (256)
T PRK06124 153 --------ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT--------- 215 (256)
T ss_pred --------CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC---------
Confidence 1122468999999999988876543 4899999999999987532111 11222222111
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+++.+|++++++.++... .....|+.+.+.++.
T Consensus 216 ~~~~~~~~~~~a~~~~~l~~~~---~~~~~G~~i~~dgg~ 252 (256)
T PRK06124 216 PLGRWGRPEEIAGAAVFLASPA---ASYVNGHVLAVDGGY 252 (256)
T ss_pred CCCCCCCHHHHHHHHHHHcCcc---cCCcCCCEEEECCCc
Confidence 1224788999999999887621 223567777776653
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=147.84 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=150.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+.+++++||||+|.||.+++++|+++|+ +|++.++ ++++. .....+ ...++..+.+|+.|.+++.++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDI--------NQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 44678999999999999999999999995 8888443 22210 000001 123578899999999998877
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ .+|+|||+||... ...++...+++|+.++..+.+++. +.+..++|++||.....
T Consensus 78 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 151 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL------ 151 (265)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC------
Confidence 74 3799999999752 234567778899999887777664 34667999999974321
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--------HHHHHHhcCCCce
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--------PLLVNLAKPGWTK 212 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--------~~l~~~~~~g~~~ 212 (586)
+..+...|+.+|...+.+.+.++.+ .|++++.++||.+..+...... ..+.+......
T Consensus 152 ---------~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-- 220 (265)
T PRK07097 152 ---------GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT-- 220 (265)
T ss_pred ---------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC--
Confidence 1234568999999999999888654 4899999999999877432110 00111111110
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 221 -------~~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 221 -------PAARWGDPEDLAGPAVFLASD---ASNFVNGHILYVDGGI 257 (265)
T ss_pred -------CccCCcCHHHHHHHHHHHhCc---ccCCCCCCEEEECCCc
Confidence 112355689999999987752 1235677888887754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=148.02 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=145.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+++||||+|+||++++++|.+.| ++|.+.+. |..+. ......+ .......+.+|+.|.+++..+++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYG-------NRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYS 74 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcC-------CCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHH
Confidence 46899999999999999999999999 48877322 11110 0000000 12346778899999776654331
Q ss_pred -------------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCC
Q 007866 84 -------------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 84 -------------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~ 141 (586)
++|+|||+||... ...+++..+++|+.++.++++++... +..++|++||...+.
T Consensus 75 ~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 150 (252)
T PRK12747 75 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---- 150 (252)
T ss_pred HHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc----
Confidence 5899999999641 11235777889999999999877653 235999999997652
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.++.||.+.++......+ .........
T Consensus 151 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~-------- 211 (252)
T PRK12747 151 -----------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATT-------- 211 (252)
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHh--------
Confidence 1123468999999999998877543 58999999999998774321111 011111100
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+.+.+|+|.++..++.. ......|+.+.+.++.
T Consensus 212 ~~~~~~~~~~~dva~~~~~l~s~---~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 212 ISAFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGGS 250 (252)
T ss_pred cCcccCCCCHHHHHHHHHHHcCc---cccCcCCcEEEecCCc
Confidence 01123467899999999876641 1234668888887653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-15 Score=148.15 Aligned_cols=219 Identities=16% Similarity=0.063 Sum_probs=148.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+|+||++++++|+++| ++|+++++ ..........+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~r--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHG-ANLILLDI--------SPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecC--------CHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999999 58988443 32100000000 12357789999999988887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
.+|+|||+||... ...+.+..+++|+.++.++++++.. .+..++|++||......
T Consensus 75 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------- 147 (263)
T PRK08226 75 RAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV------- 147 (263)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc-------
Confidence 4799999999741 1223456789999999999988653 45568999999653100
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--------cHHHHHHHhcCCCceEE
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--------LVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--------~~~~l~~~~~~g~~~~i 214 (586)
+......|+.+|...|.+.+.++.+ .|++++.++||.+.++.... ........+..+.
T Consensus 148 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---- 216 (263)
T PRK08226 148 -------ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAI---- 216 (263)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccC----
Confidence 1123467999999999988877543 48999999999998763211 1111222222221
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 217 -----p~~~~~~~~~va~~~~~l~~~---~~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 217 -----PLRRLADPLEVGELAAFLASD---ESSYLTGTQNVIDGGS 253 (263)
T ss_pred -----CCCCCCCHHHHHHHHHHHcCc---hhcCCcCceEeECCCc
Confidence 122356799999988766531 1245677777777653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=153.43 Aligned_cols=178 Identities=11% Similarity=0.032 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
..+++|+||||+|+||++++++|+++|+ +|+++++ ..++. .+.......++.++.+|+.|.+++.+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~ 84 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR--------NLDKGKAAAARITAATPGADVTLQELDLTSLASVRA 84 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC--------CHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHH
Confidence 3568999999999999999999999995 8888443 32210 00011112467889999999998877
Q ss_pred Hhc-------CCCEEEEcccCCC-----CCCChhHHHHHHHHH----HHHHHHHHHhCCCCEEEEecCccccccCCCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-----NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~g----t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+++ ++|+|||+||... ...+++..+++|+.| +..+++.+++.+.+++|++||...+..+.....
T Consensus 85 ~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~ 164 (306)
T PRK06197 85 AADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFD 164 (306)
T ss_pred HHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCcc
Confidence 664 4899999999752 234567789999999 667777777777789999999876532221111
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceE--EEEeCCCcccCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLT--CALRPSNVFGPG 194 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~--~ilRp~~v~G~~ 194 (586)
..+++ .+..+...|+.||+..+.+.+.++.+ .|+++ +++.||.+..+.
T Consensus 165 ~~~~~--~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 165 DLQWE--RRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred ccCcc--cCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 11111 13356678999999999998877543 35544 445799887654
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=147.24 Aligned_cols=217 Identities=17% Similarity=0.105 Sum_probs=142.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++|+||||+|+||.+++++|.++| ++|.++++. .... .....+ +..++.+|+.|.+++.++++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~--------~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDID--------PEAGKAAADEV---GGLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCC--------HHHHHHHHHHc---CCcEEEeeCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599885443 2210 000111 22578999999998887775
Q ss_pred ------CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCcc-ccccCCCCC
Q 007866 84 ------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTAD-VVFDGSHDI 143 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~-vyg~~~~~~ 143 (586)
++|+|||+||.... ...++..+++|+.++.++++++. +.+..++|++||.. ++|.
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~----- 147 (255)
T PRK06057 73 AAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS----- 147 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-----
Confidence 47999999987521 12357788899999988777654 34556899999864 3421
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+...|+.+|+..+.+.+.++. ..|++++++|||.+.++........-.....+ .....+
T Consensus 148 ----------~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~--~~~~~~---- 211 (255)
T PRK06057 148 ----------ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAAR--RLVHVP---- 211 (255)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHH--HHhcCC----
Confidence 12345799999877666664322 25899999999999877532211100000000 000011
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+..++|+++++..++.- ......|+.+.+.++
T Consensus 212 ~~~~~~~~~~a~~~~~l~~~---~~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 MGRFAEPEEIAAAVAFLASD---DASFITASTFLVDGG 246 (255)
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCccCcEEEECCC
Confidence 12478899999998765541 123455778888665
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-15 Score=143.87 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=145.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+++++|+||||+|.||++++++|+++|. +|.+.+. +.++. ........+...+.+|+.|.+++.+.++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~-------~~~~~--~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYA-------GSKDA--AERLAQETGATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC-------CCHHH--HHHHHHHhCCeEEecCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999994 7777322 11110 0000011235678899999988877765
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
++|++||+||... +..+++..+++|+.++.+++..+... +..++|++||..... . +
T Consensus 74 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~--~ 139 (237)
T PRK12742 74 GALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR------------M--P 139 (237)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc------------C--C
Confidence 3899999999751 12356889999999999997665543 346899999975310 0 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (586)
..+...|+.+|+..|.+++.++. ..|+++++++||.+..+......+ ......... ....+...+|+
T Consensus 140 ~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-~~~~~~~~~---------~~~~~~~p~~~ 209 (237)
T PRK12742 140 VAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP-MKDMMHSFM---------AIKRHGRPEEV 209 (237)
T ss_pred CCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH-HHHHHHhcC---------CCCCCCCHHHH
Confidence 24567899999999999887654 357999999999997654221111 111111111 11234678999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 231 AHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 231 a~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+.++..++.. ......|..+.+.++
T Consensus 210 a~~~~~l~s~---~~~~~~G~~~~~dgg 234 (237)
T PRK12742 210 AGMVAWLAGP---EASFVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHHcCc---ccCcccCCEEEeCCC
Confidence 9998877641 123467778877664
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=143.43 Aligned_cols=220 Identities=13% Similarity=0.072 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+|.||++++++|.++| ++|.+.++.. +.. .....+ ...++..+.+|+.|.+++.++
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRT--------DDGLAETAEHIEAAGRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCc--------chHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 457899999999999999999999999 5888854432 110 000001 123577899999999888776
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ..|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||.+.+...
T Consensus 77 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 152 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN---- 152 (254)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC----
Confidence 65 3699999999752 23456788999999997776665 34456799999998654211
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.+|+..+.+.+.++. .+|+++.+++||.+.++.... -.....+......
T Consensus 153 ---------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~--------- 214 (254)
T PRK06114 153 ---------RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQT--------- 214 (254)
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHhcC---------
Confidence 111246799999999988887754 368999999999998774321 1111111111111
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|.+++.++.. ......|+++.+.++.
T Consensus 215 p~~r~~~~~dva~~~~~l~s~---~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 215 PMQRMAKVDEMVGPAVFLLSD---AASFCTGVDLLVDGGF 251 (254)
T ss_pred CCCCCcCHHHHHHHHHHHcCc---cccCcCCceEEECcCE
Confidence 112245689999998876641 1345678888887753
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=146.51 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=148.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|.++++. .+.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRN--------QEKAEAVVAEIKAAGGEALAVKADVLDKESLEQAR 78 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999999 489885443 2110 000001 1235788999999998887665
Q ss_pred c-------CCCEEEEcccCCCC----------------------CCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEE
Q 007866 83 E-------GASTVFYVDATDLN----------------------TDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVY 129 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~----------------------~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~ 129 (586)
+ ++|+|||+|+.... ..+++..+++|+.++..+.++ +++.+..++|+
T Consensus 79 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~ 158 (278)
T PRK08277 79 QQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIIN 158 (278)
T ss_pred HHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4 58999999995411 234667889999998866554 44455679999
Q ss_pred ecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-------
Q 007866 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------- 199 (586)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~------- 199 (586)
+||...+. +..+...|+.+|+..|.+.+.++.+ .|+++.+++|+.+..+......
T Consensus 159 isS~~~~~---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~ 223 (278)
T PRK08277 159 ISSMNAFT---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSL 223 (278)
T ss_pred EccchhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccc
Confidence 99998763 1234567999999999998877543 4899999999999887432111
Q ss_pred HHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 200 PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 200 ~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.......... ....-+...+|+|++++.++.. +......|+.+.+.++.
T Consensus 224 ~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~--~~~~~~tG~~i~vdgG~ 272 (278)
T PRK08277 224 TERANKILAH---------TPMGRFGKPEELLGTLLWLADE--KASSFVTGVVLPVDGGF 272 (278)
T ss_pred hhHHHHHhcc---------CCccCCCCHHHHHHHHHHHcCc--cccCCcCCCEEEECCCe
Confidence 0111111111 1223356789999999876541 01234678888887653
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=148.89 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=136.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|.||++++++|+++| ++|.++++ +.+.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R--------~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~ 108 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVAR--------REDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALV 108 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 346899999999999999999999999 59998444 32210 000000 1235678999999999888877
Q ss_pred c-------CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|+|||+||.... ..+.+..+++|+.|+.++++++. +.+..++|++||.++++.
T Consensus 109 ~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---- 184 (293)
T PRK05866 109 ADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE---- 184 (293)
T ss_pred HHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC----
Confidence 6 68999999997521 12345688999999888877653 567789999999766521
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+....+.|+.+|+..+.+.+.++. ..|+++++++||.+-.+.... .. . .++
T Consensus 185 ----------~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~-----------~~--~--~~~- 238 (293)
T PRK05866 185 ----------ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP-----------TK--A--YDG- 238 (293)
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc-----------cc--c--ccC-
Confidence 012246899999999988777643 358999999999775442110 00 0 001
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
...+..+++|+.++.+++
T Consensus 239 --~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 239 --LPALTADEAAEWMVTAAR 256 (293)
T ss_pred --CCCCCHHHHHHHHHHHHh
Confidence 124679999999998887
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.8e-15 Score=146.12 Aligned_cols=223 Identities=13% Similarity=0.065 Sum_probs=148.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|.||++++++|+++| ++|.++++.... +. .....+.......++..+.+|+.|.+++.++++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~-~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAAL-AE--RAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 589885443210 00 000000000013457889999999988887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (260)
T PRK07063 81 EEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK---------- 150 (260)
T ss_pred HHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc----------
Confidence 5899999999641 233567788999999988888764 34556999999986542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----H-HHHHhcCCCceEEEcCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----L-LVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-----~-l~~~~~~g~~~~i~g~g 218 (586)
+..+..+|+.+|...+.+.+.++.+ +|+++.+++||.+-.+....... . .........
T Consensus 151 -----~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (260)
T PRK07063 151 -----IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQ-------- 217 (260)
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcC--------
Confidence 1123457999999999998887543 58999999999886543211100 0 111111100
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|.+++.++.. ......|+...+.++.
T Consensus 218 -~~~r~~~~~~va~~~~fl~s~---~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 218 -PMKRIGRPEEVAMTAVFLASD---EAPFINATCITIDGGR 254 (260)
T ss_pred -CCCCCCCHHHHHHHHHHHcCc---cccccCCcEEEECCCe
Confidence 112245689999999876641 1245678888887764
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=141.91 Aligned_cols=215 Identities=14% Similarity=0.055 Sum_probs=145.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCC-CCCCC-CCCCC--CCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESNS-LLPDS--LSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r-~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
|+++||||+|+||++++++|+++|+ +|+++ .| .+... ..... ....++..+.+|+.|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAAN--------CGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAK 71 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEE--------eCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHH
Confidence 5799999999999999999999995 88873 33 11100 00000 012468899999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.+|+|||+||... ...++...+++|+.++.++++ .+++.+.+++|++||.....
T Consensus 72 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~--------- 142 (242)
T TIGR01829 72 VEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK--------- 142 (242)
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC---------
Confidence 4799999998652 223467778999999877544 44566788999999975431
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+......|+.+|...+.+++.++. ..|+++++++|+.+.++......+........+.+ ...
T Consensus 143 ------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~---------~~~ 207 (242)
T TIGR01829 143 ------GQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIP---------VGR 207 (242)
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCC---------CCC
Confidence 112346799999988888777643 25899999999999887644333333333332221 122
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+++++..++.. ......|+.+.+.++.
T Consensus 208 ~~~~~~~a~~~~~l~~~---~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 208 LGRPEEIAAAVAFLASE---EAGYITGATLSINGGL 240 (242)
T ss_pred CcCHHHHHHHHHHHcCc---hhcCccCCEEEecCCc
Confidence 34578999988765531 1123668888888764
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=144.89 Aligned_cols=218 Identities=17% Similarity=0.108 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||+|.||.+++++|.++|+ +|.+++ |++++. .....+ ...++.++.+|+.|.+++.++++
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGA--------RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe--------CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999999999994 898844 332210 000001 12357889999999998887765
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||... ...+++..+++|+.++.++.+ .+++.+-+++|++||...+..
T Consensus 76 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~------ 149 (254)
T PRK07478 76 LAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA------ 149 (254)
T ss_pred HHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc------
Confidence 5899999999641 123467889999987776655 445556678999999865421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+-.+..... .+..........
T Consensus 150 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~--------- 212 (254)
T PRK07478 150 --------GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLH--------- 212 (254)
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcC---------
Confidence 1134568999999999998877553 479999999999876532111 111111111111
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+|++++.++.. ......|+++.+.++.
T Consensus 213 ~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 213 ALKRMAQPEEIAQAALFLASD---AASFVTGTALLVDGGV 249 (254)
T ss_pred CCCCCcCHHHHHHHHHHHcCc---hhcCCCCCeEEeCCch
Confidence 112356799999999877641 1234668888886653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=145.55 Aligned_cols=192 Identities=14% Similarity=0.036 Sum_probs=136.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
||+++||||+|+||.+++++|+++| ++|+++++..+. ... ..... .....++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~----~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVER----LERLADDLR-ARGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHH----HHHHHHHHH-HhcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 5789999999999999999999999 489995543310 000 00000 0113468899999999998887765
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
.+|+|||++|... ...++...+++|+.++.++++++.. .+.+++|++||.....
T Consensus 75 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 140 (243)
T PRK07102 75 ALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR-------------- 140 (243)
T ss_pred hcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC--------------
Confidence 3699999998651 1223456789999999999987654 4678999999975321
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
+......|+.+|...+.+.+.++ .+.|+++++++|+.+.++.... . . . .....+..+
T Consensus 141 -~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------~---~---~-----~~~~~~~~~ 200 (243)
T PRK07102 141 -GRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------L---K---L-----PGPLTAQPE 200 (243)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------c---C---C-----CccccCCHH
Confidence 11234579999999999888774 2468999999999998763210 0 0 0 011246689
Q ss_pred HHHHHHHHHHH
Q 007866 229 NVAHAHVCAAE 239 (586)
Q Consensus 229 Dva~ai~~ale 239 (586)
|+|++++.+++
T Consensus 201 ~~a~~i~~~~~ 211 (243)
T PRK07102 201 EVAKDIFRAIE 211 (243)
T ss_pred HHHHHHHHHHh
Confidence 99999998887
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=146.30 Aligned_cols=218 Identities=16% Similarity=0.150 Sum_probs=148.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++++||||+|.||++++++|+++| ++|.+.|+ +.++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDI--------DADNGAAVAASL-GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCeeEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 49998544 32210 011111 2357889999999998877765
Q ss_pred ------CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
.+|++||+|+... ...+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 74 ~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------- 142 (261)
T PRK08265 74 VVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------- 142 (261)
T ss_pred HHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc-----------
Confidence 4799999999641 2335677889999999999887654 2335899999976542
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH---HHHHHhcCCCceEEEcCCCccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP---LLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~---~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|...+.+.+.++.+ +|+++.+++||.+..+....... ...+..... .....
T Consensus 143 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--------~~p~~ 210 (261)
T PRK08265 143 ----AQTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--------FHLLG 210 (261)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--------cCCCC
Confidence 1123457999999999988877532 58999999999876553111100 000001000 01112
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 211 r~~~p~dva~~~~~l~s~---~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 211 RVGDPEEVAQVVAFLCSD---AASFVTGADYAVDGGY 244 (261)
T ss_pred CccCHHHHHHHHHHHcCc---cccCccCcEEEECCCe
Confidence 345689999999987751 1245678888887764
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=142.61 Aligned_cols=211 Identities=14% Similarity=0.020 Sum_probs=144.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+|+++||||+|.||++++++|.++| ++|+++++ ++.+ ....+...++..+.+|+.|.+++.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG-QPVIVSYR--------THYP--AIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC-CeEEEEeC--------Cchh--HHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999999 59988544 3221 0111112246789999999888776653
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC--CCEEEEecCccccccCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--vkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+.+..+++|+.++..+.+++.. .+ ..++|++||.....
T Consensus 71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~---------- 140 (236)
T PRK06483 71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK---------- 140 (236)
T ss_pred hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------
Confidence 3799999999641 1334678889999999877665543 33 45899999875421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.+|...|.+.+.++.+. ++++.+++||.+.-+... -+...+......+. .-+.
T Consensus 141 -----~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~--~~~~~~~~~~~~~~---------~~~~ 204 (236)
T PRK06483 141 -----GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD--DAAYRQKALAKSLL---------KIEP 204 (236)
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC--CHHHHHHHhccCcc---------ccCC
Confidence 11234579999999999998886642 599999999987432111 11122222221111 1134
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+|+|+++..++. .....|+++.+.++..
T Consensus 205 ~~~~va~~~~~l~~-----~~~~~G~~i~vdgg~~ 234 (236)
T PRK06483 205 GEEEIIDLVDYLLT-----SCYVTGRSLPVDGGRH 234 (236)
T ss_pred CHHHHHHHHHHHhc-----CCCcCCcEEEeCcccc
Confidence 58999999998776 3567888888877643
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=142.29 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccc-cCCC--CCCC-CCCCCC--CCCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPS--ESNS-LLPDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~--~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
++++|+||||+| .||.+++++|.++| ++|.++++..... .... .... .+...+ ...++.++.+|+.|.+++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 468999999996 69999999999999 5898855431000 0000 0000 000001 123588999999999887
Q ss_pred HHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCC
Q 007866 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~ 140 (586)
.++++ .+|+|||+||... ...+++..+++|+.++.++++++... +.+++|++||...+++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~-- 160 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP-- 160 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC--
Confidence 76654 3799999998751 12345677899999999999988643 3468999999876531
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
..+...|+.+|+..|.+++.++.+ .|++++.++|+.+..+.... ......... .+.
T Consensus 161 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~---~~~~~~~~~----~~~- 219 (256)
T PRK12748 161 -------------MPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE---ELKHHLVPK----FPQ- 219 (256)
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh---hHHHhhhcc----CCC-
Confidence 123467999999999998876543 58999999999876553211 111111111 111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+|+|+++..++.. ......|+.+++.++.
T Consensus 220 ----~~~~~~~~~a~~~~~l~~~---~~~~~~g~~~~~d~g~ 254 (256)
T PRK12748 220 ----GRVGEPVDAARLIAFLVSE---EAKWITGQVIHSEGGF 254 (256)
T ss_pred ----CCCcCHHHHHHHHHHHhCc---ccccccCCEEEecCCc
Confidence 1234479999998866541 1124568888887653
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=143.87 Aligned_cols=217 Identities=15% Similarity=0.114 Sum_probs=147.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||.+++++|.++| ++|+++++. ..+. ...+.+ ...+...+.+|+.|.+++.+++
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRK--------LDGCQAVADAIVAAGGKAEALACHIGEMEQIDALF 76 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 599985443 2100 000000 1234678899999998887665
Q ss_pred c-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ .+|+|||+|+... ...+++..+++|+.++.++++++ ++.+..++|++||...+.
T Consensus 77 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------ 150 (252)
T PRK07035 77 AHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS------ 150 (252)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC------
Confidence 4 4799999998531 12235678999999998888766 445667999999975432
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
+..+.+.|+.||+..|.+++.++.+ .|++++.+.||.+-.+...... ...........
T Consensus 151 ---------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~-------- 213 (252)
T PRK07035 151 ---------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHI-------- 213 (252)
T ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccC--------
Confidence 1234568999999999999888643 5899999999988654322111 11111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+...+|+|+++...+.. ......|+.+.+.++
T Consensus 214 -~~~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~~dgg 249 (252)
T PRK07035 214 -PLRRHAEPSEMAGAVLYLASD---ASSYTTGECLNVDGG 249 (252)
T ss_pred -CCCCcCCHHHHHHHHHHHhCc---cccCccCCEEEeCCC
Confidence 112355689999999876641 123457778887664
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-15 Score=146.58 Aligned_cols=217 Identities=9% Similarity=0.046 Sum_probs=148.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+.+|+++||||+|.||++++++|+++| ++|.++++ ..... ....+ ...++..+.+|+.|.+++.+++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~--------~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGV--------AEAPE-TQAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecC--------chHHH-HHHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 4567899999999999999999999999 58888443 21100 00000 1245788999999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~ 143 (586)
+ +.|++||+||... ...+++..+++|+.++.++.+++.. .+ -.++|++||...+...
T Consensus 75 ~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---- 150 (251)
T PRK12481 75 SQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG---- 150 (251)
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC----
Confidence 5 4799999999752 2345678899999999888876643 33 3589999998776311
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
.....|+.||...+.+.+.++. .+|+++.+++||.+-.+...... +...+..... +
T Consensus 151 -----------~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~---- 211 (251)
T PRK12481 151 -----------IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILER----I---- 211 (251)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhc----C----
Confidence 2235799999999999887654 36899999999998654321110 1111111111 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+...+...+|+|.++..++.. ......|+.+.+.++
T Consensus 212 -p~~~~~~peeva~~~~~L~s~---~~~~~~G~~i~vdgg 247 (251)
T PRK12481 212 -PASRWGTPDDLAGPAIFLSSS---ASDYVTGYTLAVDGG 247 (251)
T ss_pred -CCCCCcCHHHHHHHHHHHhCc---cccCcCCceEEECCC
Confidence 112356789999999877641 134567778777665
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-14 Score=141.77 Aligned_cols=218 Identities=16% Similarity=0.109 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++++||||+|+||++++++|+++| ++|.++++ ++++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREG-AKVVVADR--------DAAGGEETVALIREAGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 356899999999999999999999999 48988444 32210 000000 1235788999999998888776
Q ss_pred c-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ .+|+|||+|+... ...+++..+++|+.++.++++++ .+.+..++|++||...+++
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~----- 150 (253)
T PRK06172 76 EQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGA----- 150 (253)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccC-----
Confidence 5 3699999999741 12346778889999998776654 3455678999999877632
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~ 217 (586)
......|+.+|...|.+.+.++.+ .|+++.++.||.+-.+..... .+..........
T Consensus 151 ----------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------- 213 (253)
T PRK06172 151 ----------APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMH------- 213 (253)
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccC-------
Confidence 134567999999999988877643 579999999998865532211 111111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|++..++.++... .....|+.+.+.++.
T Consensus 214 --~~~~~~~p~~ia~~~~~l~~~~---~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 214 --PVGRIGKVEEVASAVLYLCSDG---ASFTTGHALMVDGGA 250 (253)
T ss_pred --CCCCccCHHHHHHHHHHHhCcc---ccCcCCcEEEECCCc
Confidence 1122456899999998776411 245678888888764
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-15 Score=145.07 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=140.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+|+|+||||+|+||..+++.|+++|+ +|.+.. .|.++.. .....+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-~v~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-SVGINY-------ARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEe-------CCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHH
Confidence 67999999999999999999999994 776522 1221100 000000 12367899999999988776653
Q ss_pred ------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHHh-CCC------CEEEEecCccccccCCCC
Q 007866 84 ------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACRE-CKV------RRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~~-~gv------kr~I~~SS~~vyg~~~~~ 142 (586)
.+|+|||+||.... ..+....+++|+.++.++++++.. ... .++|++||...+...
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~--- 150 (248)
T PRK06947 74 VQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS--- 150 (248)
T ss_pred HHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC---
Confidence 58999999996411 123456789999999888764433 222 369999997654210
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g 218 (586)
......|+.+|...+.+++.++.+ .|++++++|||.+..+.... ..+..........
T Consensus 151 -----------~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~-------- 211 (248)
T PRK06947 151 -----------PNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQT-------- 211 (248)
T ss_pred -----------CCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcC--------
Confidence 011246999999999888877654 48999999999998774221 1111111111100
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..--....+|+|++++.++... .....|+.+.+.++
T Consensus 212 -~~~~~~~~e~va~~~~~l~~~~---~~~~~G~~~~~~gg 247 (248)
T PRK06947 212 -PLGRAGEADEVAETIVWLLSDA---ASYVTGALLDVGGG 247 (248)
T ss_pred -CCCCCcCHHHHHHHHHHHcCcc---ccCcCCceEeeCCC
Confidence 0111356899999999876621 23467777777654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=143.04 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=146.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||+++++.|+++|+ +|.+.++. +... ...++..+.+|+.|.+++.++++
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~--------~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIH--------GGDG------QHENYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC--------cccc------ccCceEEEEccCCCHHHHHHHHHHH
Confidence 4568999999999999999999999995 88885443 2211 12357889999999998877664
Q ss_pred -----CCCEEEEcccCCC----------------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCcccccc
Q 007866 84 -----GASTVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFD 138 (586)
Q Consensus 84 -----~~D~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~ 138 (586)
.+|+|||+||... ...+++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 72 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~- 150 (266)
T PRK06171 72 IEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE- 150 (266)
T ss_pred HHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC-
Confidence 4799999999641 11234668899999999999888643 345899999987642
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCccc-CCCCCc------------HHHH
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG-PGDTQL------------VPLL 202 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G-~~~~~~------------~~~l 202 (586)
+......|+.+|...+.+.+.++.+ .|+++.+++||.+-. +..... ...+
T Consensus 151 --------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~ 216 (266)
T PRK06171 151 --------------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQL 216 (266)
T ss_pred --------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHH
Confidence 1123568999999999998887643 589999999998742 111100 0111
Q ss_pred HHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.....+. +..+...+...+|+|.++..++.. ......|+++++.++
T Consensus 217 ~~~~~~~-------~~~p~~r~~~~~eva~~~~fl~s~---~~~~itG~~i~vdgg 262 (266)
T PRK06171 217 RAGYTKT-------STIPLGRSGKLSEVADLVCYLLSD---RASYITGVTTNIAGG 262 (266)
T ss_pred Hhhhccc-------ccccCCCCCCHHHhhhheeeeecc---ccccceeeEEEecCc
Confidence 1111110 011123356789999999876641 123467788888765
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=145.22 Aligned_cols=218 Identities=13% Similarity=0.056 Sum_probs=148.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+.+++|+||||+|+||+++++.|.++| ++|+++ .|++++. .....+ ...++..+.+|+.+.+++.++
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 76 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAG-AKVVLA--------SRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAA 76 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 3457999999999999999999999999 489984 4433210 000000 123578899999999888877
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC--------CCEEEEecCccc
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK--------VRRLVYNSTADV 135 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--------vkr~I~~SS~~v 135 (586)
++ ++|+|||+|+... ...+++..+++|+.++.++++++.. .+ ..++|++||...
T Consensus 77 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 156 (258)
T PRK06949 77 VAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAG 156 (258)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccc
Confidence 65 4899999999641 1235677899999999999887652 21 258999999876
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCc
Q 007866 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWT 211 (586)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~ 211 (586)
+. +..+..+|+.+|...|.+.+.++.+ .|+++++++||.++++...... ........+-
T Consensus 157 ~~---------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~-- 219 (258)
T PRK06949 157 LR---------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKLVSM-- 219 (258)
T ss_pred cC---------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhc--
Confidence 52 1234568999999999998877543 5899999999999988643211 1111111110
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+ ....+...+|++.++..++... .....|....+.++
T Consensus 220 --~-----~~~~~~~p~~~~~~~~~l~~~~---~~~~~G~~i~~dgg 256 (258)
T PRK06949 220 --L-----PRKRVGKPEDLDGLLLLLAADE---SQFINGAIISADDG 256 (258)
T ss_pred --C-----CCCCCcCHHHHHHHHHHHhChh---hcCCCCcEEEeCCC
Confidence 0 1123455799999998776511 23466777666554
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=145.98 Aligned_cols=159 Identities=17% Similarity=0.103 Sum_probs=118.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
||+++||||+|+||++++++|+++| ++|.+++ |+..+. .. .....++.++.+|+.|.+++.++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~--------r~~~~~-~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 69 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVA--------RSRHPS-LA-AAAGERLAEVELDLSDAAAAAAWLAGDLL 69 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEe--------cCcchh-hh-hccCCeEEEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 4888844 332211 10 1112468889999999988877442
Q ss_pred -------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
..|++||+|+.... ..+++..+++|+.++..+.+.+. +.+.+++|++||...+.
T Consensus 70 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 142 (243)
T PRK07023 70 AAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN------- 142 (243)
T ss_pred HHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------
Confidence 36899999997521 22357788999999766665554 34567999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCccc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFG 192 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G 192 (586)
+..+...|+.+|...|.+++.++.+ .|+++.+++|+.+-.
T Consensus 143 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t 184 (243)
T PRK07023 143 --------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDT 184 (243)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Confidence 2245678999999999999988643 589999999998743
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=145.16 Aligned_cols=220 Identities=14% Similarity=0.100 Sum_probs=148.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+.+++++||||+|.||++++++|+++| ++|.+.++ +.++. .....+ ...++..+.+|+.|.+++.++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 76 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAG-AQVAIAAR--------HLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSM 76 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcC--------CHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3457899999999999999999999999 48988443 32210 000001 123577889999999888776
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~ 142 (586)
++ ++|++||+||... ...+.+..+++|+.++.++.+++... + -.++|++||.+..-..
T Consensus 77 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--- 153 (253)
T PRK05867 77 LDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--- 153 (253)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---
Confidence 64 5899999999752 12345677899999999999887532 2 2479999887542100
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
.......|+.+|...+.+.+.++.+ .|+++.+++||.+-.+..... +...+......
T Consensus 154 ----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~-~~~~~~~~~~~--------- 213 (253)
T PRK05867 154 ----------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY-TEYQPLWEPKI--------- 213 (253)
T ss_pred ----------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc-hHHHHHHHhcC---------
Confidence 0112357999999999999887643 589999999999976643221 11112221111
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 214 ~~~r~~~p~~va~~~~~L~s~---~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 214 PLGRLGRPEELAGLYLYLASE---ASSYMTGSDIVIDGGY 250 (253)
T ss_pred CCCCCcCHHHHHHHHHHHcCc---ccCCcCCCeEEECCCc
Confidence 112356789999999877641 1345678888887764
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=146.09 Aligned_cols=221 Identities=17% Similarity=0.116 Sum_probs=146.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+|.||+++++.|+++| ++|+++++ ++........+ ...++..+.+|+.|.+++.++++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r--------~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEG-AYVLAVDI--------AEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC--------cHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 457899999999999999999999999 59998544 31100000011 12357889999999988876664
Q ss_pred -------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||.... ....+..+++|+.++..+.+++. +.+ .++|++||.+.+.+
T Consensus 75 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~------ 147 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAA------ 147 (272)
T ss_pred HHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCC------
Confidence 37999999997521 12346677889998877766543 344 69999999876521
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEEcC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~----~l~~~~~~g~~~~i~g~ 217 (586)
......|+.+|+..+.+.+.++. ..|+++.++.||.+..+....... .+......... .
T Consensus 148 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-----~ 213 (272)
T PRK08589 148 ---------DLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-----W 213 (272)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-----c
Confidence 12346799999999999888754 358999999999987653221100 00000000000 0
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 214 ~~~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~i~vdgg~ 252 (272)
T PRK08589 214 MTPLGRLGKPEEVAKLVVFLASD---DSSFITGETIRIDGGV 252 (272)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc---hhcCcCCCEEEECCCc
Confidence 01112356799999999877641 1245678888887764
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=141.60 Aligned_cols=230 Identities=11% Similarity=0.068 Sum_probs=150.5
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|....+.+++++||||+|.||++++++|+++| ++|.+.++.... +... ...+.. ....++..+.+|+.|.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~-~~~~~~~~~~~Dv~~~~~i~~ 75 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEEN-LKKA--REKIKS-ESNVDVSYIVADLTKREDLER 75 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh-hcCCceEEEEecCCCHHHHHH
Confidence 33334567899999999999999999999999 599985543210 0000 000000 012467889999999998887
Q ss_pred Hhc------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCC
Q 007866 81 VLE------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 81 ~l~------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+++ ++|++||+||... +..+++..+++|+.+...+.+ .+++.+..++|++||...+.
T Consensus 76 ~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~------ 149 (263)
T PRK08339 76 TVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE------ 149 (263)
T ss_pred HHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC------
Confidence 775 4899999999641 234567788899877665554 44556667999999987641
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPG 209 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~-----------~~~l~~~~~~g 209 (586)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+-.+..... .+...+...+.
T Consensus 150 ---------~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T PRK08339 150 ---------PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP 220 (263)
T ss_pred ---------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc
Confidence 1122457999999998888776543 689999999999865421100 01111111111
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.+..-+...+|+|+++..++.. ......|+.+.+.++...+
T Consensus 221 ---------~p~~r~~~p~dva~~v~fL~s~---~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 221 ---------IPLGRLGEPEEIGYLVAFLASD---LGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ---------CCcccCcCHHHHHHHHHHHhcc---hhcCccCceEEECCCcccc
Confidence 1122356689999999876641 1235678888887776544
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=141.95 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=148.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+.+++++||||+|.||++++++|.++| ++|.+.|+... ... ...+.. ...++..+.+|+.|.+++.++++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~----~~~-~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEP----TET-IEQVTA--LGRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcch----HHH-HHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 3557899999999999999999999999 58888544221 000 000100 12357788999999988887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|++||+||... ...+++..+++|+.++.++++++... + -.++|++||...+...
T Consensus 79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (253)
T PRK08993 79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG------ 152 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC------
Confidence 4799999999752 23457888999999999998877542 2 2589999998776311
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~ 220 (586)
.....|+.+|+..|.+.+.++.+ +|+++..++||.+-.+...... ........+. ++
T Consensus 153 ---------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~----~p----- 214 (253)
T PRK08993 153 ---------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDR----IP----- 214 (253)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhc----CC-----
Confidence 12347999999999988877554 6899999999999765322110 0111111111 11
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..-+...+|+|.++..++.. ......|..+.+.++
T Consensus 215 ~~r~~~p~eva~~~~~l~s~---~~~~~~G~~~~~dgg 249 (253)
T PRK08993 215 AGRWGLPSDLMGPVVFLASS---ASDYINGYTIAVDGG 249 (253)
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCccCcEEEECCC
Confidence 11255689999999877641 123566777777654
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=140.55 Aligned_cols=190 Identities=16% Similarity=0.086 Sum_probs=132.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC------CCCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN------SLLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~------~~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
..+++|+||||+|.||++++++|+++|.++|++. .|++++ ..+. .....+++++.+|+.|.+++.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~--------~r~~~~~~~~~~~~l~-~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLA--------ALPDDPRRDAAVAQMK-AAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE--------eCCcchhHHHHHHHHH-hcCCCceEEEEecCCChHHHH
Confidence 4568999999999999999999999964699984 443321 0010 111236889999999988765
Q ss_pred HHhc------CCCEEEEcccCCCC----CCCh---hHHHHHHHHHHHH----HHHHHHhCCCCEEEEecCccccccCCCC
Q 007866 80 KVLE------GASTVFYVDATDLN----TDDF---YNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 80 ~~l~------~~D~Vih~aa~~~~----~~~~---~~~~~~Nv~gt~~----lleaa~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++++ +.|++||++|.... ..++ ...+++|+.++.+ +++.+++.+..++|++||...+.
T Consensus 77 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~----- 151 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER----- 151 (253)
T ss_pred HHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC-----
Confidence 5443 58999999987521 1122 2468999988876 56677777788999999985431
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||+..+.+.+.+. ..+|+++++++||.+..+... .. .. .
T Consensus 152 ----------~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~--------~~---~~-------~ 203 (253)
T PRK07904 152 ----------VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA--------HA---KE-------A 203 (253)
T ss_pred ----------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc--------cC---CC-------C
Confidence 11234579999999886655542 346899999999999764211 00 00 0
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
...+..+|+|+.++.+++
T Consensus 204 --~~~~~~~~~A~~i~~~~~ 221 (253)
T PRK07904 204 --PLTVDKEDVAKLAVTAVA 221 (253)
T ss_pred --CCCCCHHHHHHHHHHHHH
Confidence 113678999999998887
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=162.42 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=149.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||++++++|+++| ++|+++|+.... +... ...+........+..+.+|++|.+++.++++
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~-~~~~--~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEA-AEAV--AAEINGQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHH-HHHH--HHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599996554210 0000 0000000112356788999999999888775
Q ss_pred -----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHH----HhCCC-CEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKV-RRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa----~~~gv-kr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||.... ..+....+++|+.+..++..++ ++.+. .++|++||...+..
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~-------- 559 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYA-------- 559 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCC--------
Confidence 58999999997521 1235677888988877665443 34442 48999999765421
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCCCCcHHHHHHHh-cCCCce----EEEcC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLA-KPGWTK----FIIGS 217 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~-G~~~~~~~~~l~~~~-~~g~~~----~i~g~ 217 (586)
......|+.+|+..|.+++.++.+ .|+++.+++|+.++ |.+.... ....... ..+... ..+..
T Consensus 560 -------~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 631 (676)
T TIGR02632 560 -------GKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDG-EWREERAAAYGIPADELEEHYAK 631 (676)
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccc-cchhhhhhcccCChHHHHHHHHh
Confidence 123568999999999999887553 58999999999887 3321100 0000000 001000 00112
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
......+++.+|+|+++..++.. ......|..+++.++..
T Consensus 632 r~~l~r~v~peDVA~av~~L~s~---~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 632 RTLLKRHIFPADIAEAVFFLASS---KSEKTTGCIITVDGGVP 671 (676)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCC---cccCCcCcEEEECCCch
Confidence 23345678999999999977641 12346688999988753
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=144.94 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=147.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.++++++||||+|.||++++++|+++|+ +|+++++.... +... ...+.. ...++.++.+|++|.+++.++++
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~-~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEK-VDAA--VAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHH--HHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999995 89995543210 0000 000000 12356788999999998887764
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+|+.. ....++...+++|+.++.++++++... .-+++|++||...+.
T Consensus 81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------- 149 (264)
T PRK07576 81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------- 149 (264)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc-----------
Confidence 369999999753 123346678889999999999887642 125899999976541
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCC-CCCcHH--HHHHHhcCCCceEEEcCCCccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG-DTQLVP--LLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~-~~~~~~--~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|...|.+++.++.+ .|+++++++|+.+.+.. .....+ ........ .....
T Consensus 150 ----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~---------~~~~~ 216 (264)
T PRK07576 150 ----PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQ---------SVPLK 216 (264)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHh---------cCCCC
Confidence 1234568999999999998877532 57999999999887532 111111 00011111 01123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+|+|++++.++... .....|+.+.+.++.
T Consensus 217 ~~~~~~dva~~~~~l~~~~---~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 217 RNGTKQDIANAALFLASDM---ASYITGVVLPVDGGW 250 (264)
T ss_pred CCCCHHHHHHHHHHHcChh---hcCccCCEEEECCCc
Confidence 4567899999999887621 234567787887764
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=143.41 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=136.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
||+++||||+|+||++++++|.++| ++|.+++ |.+.+ .+... ....++.++.+|++|.+++.++++.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g-~~V~~~~--------r~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG-THVISIS--------RTENK-ELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC-CEEEEEe--------CCchH-HHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 4789999999999999999999999 5898844 33211 00000 01246788999999999888777531
Q ss_pred -----------CEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhC-CCCEEEEecCccccccCCC
Q 007866 86 -----------STVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----REC-KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 86 -----------D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~-gvkr~I~~SS~~vyg~~~~ 141 (586)
+.+||+||... ...++...+++|+.++..+++++ ++. +.+++|++||...+.
T Consensus 71 ~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---- 146 (251)
T PRK06924 71 LSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN---- 146 (251)
T ss_pred HHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC----
Confidence 27899998641 12345667788988866555544 333 346899999976531
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPG 209 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~-------~~~~l~~~~~~g 209 (586)
+..+...|+.+|+..|.+.+.++.+ .++++..++||.+-.+.... ... ..+.....
T Consensus 147 -----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~ 214 (251)
T PRK06924 147 -----------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFT-NLDRFITL 214 (251)
T ss_pred -----------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccch-HHHHHHHH
Confidence 2345678999999999999877533 47999999999875442100 000 00000000
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
. ....+...+|+|++++.++.. .+...|+.+.+
T Consensus 215 -----~----~~~~~~~~~dva~~~~~l~~~----~~~~~G~~~~v 247 (251)
T PRK06924 215 -----K----EEGKLLSPEYVAKALRNLLET----EDFPNGEVIDI 247 (251)
T ss_pred -----h----hcCCcCCHHHHHHHHHHHHhc----ccCCCCCEeeh
Confidence 0 011257799999999988872 13455665544
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=140.73 Aligned_cols=216 Identities=14% Similarity=0.122 Sum_probs=145.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+|+++||||+|.||+++++.|.++|+ +|++.++.. ... .....+ ...++.++.+|+.|++++.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTK--------EKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 47899999999999999999999994 898855432 110 000001 12467889999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... +..+++..+++|+.++.++++++.. .+ -.++|++||...+.
T Consensus 72 ~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-------- 143 (252)
T PRK07677 72 IDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD-------- 143 (252)
T ss_pred HHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc--------
Confidence 4799999998531 1223577899999999999998843 22 35899999885431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhh----cCCCCceEEEEeCCCcccCCC-CCc--HHHHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFA----NNIDGLLTCALRPSNVFGPGD-TQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~----~~~~gl~~~ilRp~~v~G~~~-~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+.....+|+.+|...+.+.+.+ .+++|+++..++||.+.++.. ... .+...+.+.+..+
T Consensus 144 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (252)
T PRK07677 144 -------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVP------- 209 (252)
T ss_pred -------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCC-------
Confidence 1123357999999999888864 333689999999999875321 111 1222222222111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+...+|+++++..++.. ......|+.+.+.++.
T Consensus 210 --~~~~~~~~~va~~~~~l~~~---~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 210 --LGRLGTPEEIAGLAYFLLSD---EAAYINGTCITMDGGQ 245 (252)
T ss_pred --CCCCCCHHHHHHHHHHHcCc---cccccCCCEEEECCCe
Confidence 12356789999988766541 1235778888887764
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.5e-14 Score=145.43 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=136.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++++||||+|.||++++++|.++| ++|.++++ ++++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R--------~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 75 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRG-ARLVLAAR--------DEEALQAVAEECRALGAEVLVVPTDVTDADQVKALA 75 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence 456899999999999999999999999 58888443 32210 000001 1235778899999999988776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|++||+||... +..+.+..+++|+.++.++.+++ ++.+..++|++||...+..
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~------ 149 (330)
T PRK06139 76 TQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAA------ 149 (330)
T ss_pred HHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCC------
Confidence 3 4799999999651 12345678999999999887775 3445568999999876521
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHH----hhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVL----FANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~----~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
......|+.||...+.+.+ ++.+..|+.++.+.|+.+.++......+ . .+.. ...
T Consensus 150 ---------~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~-----~-~~~~------~~~ 208 (330)
T PRK06139 150 ---------QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN-----Y-TGRR------LTP 208 (330)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc-----c-cccc------ccC
Confidence 1234689999997555554 4433348999999999998775321110 0 0100 011
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
....+..+|+|++++.+++
T Consensus 209 ~~~~~~pe~vA~~il~~~~ 227 (330)
T PRK06139 209 PPPVYDPRRVAKAVVRLAD 227 (330)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 2246789999999999887
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-14 Score=133.15 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=134.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---~~ 85 (586)
|+++||||+|.||.++++.|.++ ++|.+ ..|++. .+.+|+.|.+++.++++ ++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~--------~~r~~~--------------~~~~D~~~~~~~~~~~~~~~~i 56 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVIT--------AGRSSG--------------DVQVDITDPASIRALFEKVGKV 56 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEE--------EecCCC--------------ceEecCCChHHHHHHHHhcCCC
Confidence 58999999999999999999988 48888 444321 36899999999988876 58
Q ss_pred CEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 86 STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 86 D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
|+|||+||... ...++...+++|+.++.++.+++... +..+++++||..... +...
T Consensus 57 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~---------------~~~~ 121 (199)
T PRK07578 57 DAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE---------------PIPG 121 (199)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC---------------CCCC
Confidence 99999999641 23346777899999999999987653 235799999865421 1234
Q ss_pred CChHHHHHHHHHHHHHhhcC--CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHH
Q 007866 157 QDLMCDLKAQAEALVLFANN--IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~--~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (586)
...|+.+|...+.+.+.++. ..|+++..+.||.+-.+.. .. +. ..++ ..++..+|+|+++
T Consensus 122 ~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~-----~~------~~--~~~~-----~~~~~~~~~a~~~ 183 (199)
T PRK07578 122 GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE-----KY------GP--FFPG-----FEPVPAARVALAY 183 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh-----hh------hh--cCCC-----CCCCCHHHHHHHH
Confidence 56899999999988887655 3689999999997743211 00 00 0111 2357899999999
Q ss_pred HHHHHHhhcccccCCCcEEEEe
Q 007866 235 VCAAEALDSRMVSVAGMAFFIT 256 (586)
Q Consensus 235 ~~ale~~~~~~~~~~g~~~ni~ 256 (586)
..+++ ....|++|+++
T Consensus 184 ~~~~~------~~~~g~~~~~~ 199 (199)
T PRK07578 184 VRSVE------GAQTGEVYKVG 199 (199)
T ss_pred HHHhc------cceeeEEeccC
Confidence 88876 24566777653
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-14 Score=139.68 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=135.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++++||||+|+||.+++++|+++| ++|+++++. +... .....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRN--------AEKLEALAARLPYPGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46899999999999999999999999 589995443 2210 000000 13468899999999988877654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+.+..+++|+.|+.++++++.. .+..++|++||...+..
T Consensus 75 ~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 145 (263)
T PRK09072 75 AREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIG--------- 145 (263)
T ss_pred HHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcC---------
Confidence 4799999999752 1234567888999999999988754 34568999988754311
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
......|+.+|...+.+++.++. ..|++++++.|+.+-.+..... .. . ... ......
T Consensus 146 ------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~----~~-----~---~~~--~~~~~~ 205 (263)
T PRK09072 146 ------YPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEA----VQ-----A---LNR--ALGNAM 205 (263)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhh----cc-----c---ccc--cccCCC
Confidence 12346799999998887776653 3579999999998865432110 00 0 000 001135
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
..++|+|++++.+++
T Consensus 206 ~~~~~va~~i~~~~~ 220 (263)
T PRK09072 206 DDPEDVAAAVLQAIE 220 (263)
T ss_pred CCHHHHHHHHHHHHh
Confidence 678999999999988
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=140.34 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++++||||+|.||++++++|+++| ++|.+.++ ++++. .....+ ..++..+.+|+.|.+++.++++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEG-ARVAVLER--------SAEKLASLRQRF-GDHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHh-CCcceEEEccCCCHHHHHHHHHH
Confidence 356899999999999999999999999 58988544 32210 000111 2357889999999988877664
Q ss_pred ------CCCEEEEcccCCC---C--CCC-------hhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCC
Q 007866 84 ------GASTVFYVDATDL---N--TDD-------FYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~---~--~~~-------~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~ 142 (586)
.+|++||+||... . ..+ ++..+++|+.++.++++++... .-.++|++||...+.+
T Consensus 74 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---- 149 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYP---- 149 (263)
T ss_pred HHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCC----
Confidence 4799999999641 1 111 4567889999999888877642 1258999999877631
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPG 209 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~-----------~~~l~~~~~~g 209 (586)
..+...|+.+|...+.+.+.++.+ .++++.++.||.+..+..... .+...+...+
T Consensus 150 -----------~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (263)
T PRK06200 150 -----------GGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAA- 217 (263)
T ss_pred -----------CCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhc-
Confidence 133457999999999998887653 248999999998865531100 0111111111
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcc-cccCCCcEEEEeCCC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLE 259 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~-~~~~~g~~~ni~~~~ 259 (586)
..+..-+...+|+|.+++.++.. . .....|+.+.+.++.
T Consensus 218 --------~~p~~r~~~~~eva~~~~fl~s~---~~~~~itG~~i~vdgG~ 257 (263)
T PRK06200 218 --------ITPLQFAPQPEDHTGPYVLLASR---RNSRALTGVVINADGGL 257 (263)
T ss_pred --------CCCCCCCCCHHHHhhhhhheecc---cccCcccceEEEEcCce
Confidence 11223466789999999876641 1 234678888887653
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=141.87 Aligned_cols=207 Identities=19% Similarity=0.115 Sum_probs=140.7
Q ss_pred CCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHH
Q 007866 2 PFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 2 ~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~ 79 (586)
+.....+++++||||+|.||.++++.|.++|+ +|.++++. .+.. .....+. ...+..+.+|+.|.+++.
T Consensus 3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~--------~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~ 73 (296)
T PRK05872 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE--------EAELAALAAELGGDDRVLTVVADVTDLAAMQ 73 (296)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC--------HHHHHHHHHHhcCCCcEEEEEecCCCHHHHH
Confidence 34455678999999999999999999999994 88885443 2210 0001111 234566779999998887
Q ss_pred HHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCC
Q 007866 80 KVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~ 142 (586)
++++ ++|+|||+||... ...+.+..+++|+.|+.++++++... +..++|++||...+..
T Consensus 74 ~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~---- 149 (296)
T PRK05872 74 AAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAA---- 149 (296)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCC----
Confidence 7653 4799999999751 12345778999999999999887542 2358999999876531
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g~ 217 (586)
......|+.+|...+.+.+.++. ..|+.+.++.|+.+..+....... ..........+
T Consensus 150 -----------~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~------ 212 (296)
T PRK05872 150 -----------APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLP------ 212 (296)
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCC------
Confidence 12346899999999999887753 268999999999887653221110 01111111110
Q ss_pred CCccccccchhHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale 239 (586)
.....++..+|+|++++.+++
T Consensus 213 -~p~~~~~~~~~va~~i~~~~~ 233 (296)
T PRK05872 213 -WPLRRTTSVEKCAAAFVDGIE 233 (296)
T ss_pred -CcccCCCCHHHHHHHHHHHHh
Confidence 112245678999999988877
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=138.22 Aligned_cols=221 Identities=17% Similarity=0.111 Sum_probs=147.4
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRG-FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG-~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++++||||+| -||+.+++.|+++|+ +|.+.|+.... +.. ....+.......++..+.+|+.|.+++.++++
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERR-LGE--TADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHH-HHH--HHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 468999999998 599999999999994 88885543210 000 00000010112357889999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... +..++...+++|+.++.++++++.. .+ -.++|++||...+-
T Consensus 92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~--------- 162 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR--------- 162 (262)
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------
Confidence 4799999999641 1234667788999999988887653 22 35788888865431
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|+..|.+.+.++.+ +|+++.+++|+.+..+..... -+...+......+ ..
T Consensus 163 ------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~---------~~ 227 (262)
T PRK07831 163 ------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREA---------FG 227 (262)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCC---------CC
Confidence 1134567999999999999888643 689999999999987743211 1222232322221 12
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
-+...+|+|++++.++... .....|+.+.+.++
T Consensus 228 r~~~p~~va~~~~~l~s~~---~~~itG~~i~v~~~ 260 (262)
T PRK07831 228 RAAEPWEVANVIAFLASDY---SSYLTGEVVSVSSQ 260 (262)
T ss_pred CCcCHHHHHHHHHHHcCch---hcCcCCceEEeCCC
Confidence 2456899999998766511 23467777777653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=140.58 Aligned_cols=215 Identities=18% Similarity=0.124 Sum_probs=142.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|+||++++++|+++|. +|++.|+... .+.. .....+ ...++..+.+|+.|.+++.++++
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~---~~~~---~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASA---LDAS---DVLDEIRAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCch---hHHH---HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999999999995 8888554321 0000 000111 12467889999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--------C---CCEEEEecCccccccC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--------K---VRRLVYNSTADVVFDG 139 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--------g---vkr~I~~SS~~vyg~~ 139 (586)
++|+|||+||... ...+++..+++|+.++.++++++..+ + -.++|++||.+.+..
T Consensus 83 ~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~- 161 (306)
T PRK07792 83 TAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG- 161 (306)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC-
Confidence 4899999999752 12356778999999999999876421 1 248999999765421
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEc
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g 216 (586)
......|+.+|...+.+.+.++. .+|+++.++.|+. . +....... ...+ ...
T Consensus 162 --------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~---t~~~~~~~----~~~~-~~~- 216 (306)
T PRK07792 162 --------------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--R---TAMTADVF----GDAP-DVE- 216 (306)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--C---Cchhhhhc----cccc-hhh-
Confidence 12345799999999999887754 3689999999872 1 11111110 0000 000
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+.+..+|+|.++..++.. ......|++|.+.++
T Consensus 217 --~~~~~~~~pe~va~~v~~L~s~---~~~~~tG~~~~v~gg 253 (306)
T PRK07792 217 --AGGIDPLSPEHVVPLVQFLASP---AAAEVNGQVFIVYGP 253 (306)
T ss_pred --hhccCCCCHHHHHHHHHHHcCc---cccCCCCCEEEEcCC
Confidence 0112345799999988766541 123467788888654
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-13 Score=135.00 Aligned_cols=202 Identities=19% Similarity=0.124 Sum_probs=135.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC---CCC--CCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP---DSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~---~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+.+++++||||+|+||+++++.|.++| ++|+++++.... .+. ....+. ..+ ...++..+.+|+.|.+++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEP--HPK-LPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeccccc--ccc-hhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHH
Confidence 346899999999999999999999999 599885543210 000 000000 000 12357889999999998887
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ ++|+|||+||... +..+++..+++|+.++.++++++... +-.++|++||....
T Consensus 80 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~------ 153 (273)
T PRK08278 80 AVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL------ 153 (273)
T ss_pred HHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc------
Confidence 765 5899999999751 12345778889999999999988642 33578888875321
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
... ...+.+.|+.+|+..|.+++.++.+ +|++++.+.|+..... . ..+....+. .
T Consensus 154 ----~~~---~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t---~----~~~~~~~~~--------~ 211 (273)
T PRK08278 154 ----DPK---WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIAT---A----AVRNLLGGD--------E 211 (273)
T ss_pred ----ccc---ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCcccc---H----HHHhccccc--------c
Confidence 000 1145678999999999999987653 5799999999843311 1 111111111 1
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
....+...+|+|++++.++.
T Consensus 212 ~~~~~~~p~~va~~~~~l~~ 231 (273)
T PRK08278 212 AMRRSRTPEIMADAAYEILS 231 (273)
T ss_pred cccccCCHHHHHHHHHHHhc
Confidence 11235678999999998775
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-13 Score=137.11 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=143.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+++++||||+|.||++++++|.++|+ .|.+. .|..... .....+ ...++..+.+|+.|.+++.++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~ 75 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVIN--------YRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNL 75 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEE--------eCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHH
Confidence 4678999999999999999999999994 77763 3321100 000001 123577889999999988776
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCC-CCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECK-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~g-vkr~I~~SS~~vyg~~~~~ 142 (586)
++ .+|++||+|+... +..+++..+++|+.++.++.+ .+.+.+ -.++|++||...+.
T Consensus 76 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~----- 150 (261)
T PRK08936 76 IQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI----- 150 (261)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC-----
Confidence 64 4799999999752 123456778999888765554 445544 35899999975431
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.+|...+.+.+.++. ..|+++++++|+.+..+..... -+..........
T Consensus 151 ----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------- 213 (261)
T PRK08936 151 ----------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMI------- 213 (261)
T ss_pred ----------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcC-------
Confidence 223456899999887777666543 2589999999999987753211 111111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+++++..++.. ......|..+.+.++.
T Consensus 214 --~~~~~~~~~~va~~~~~l~s~---~~~~~~G~~i~~d~g~ 250 (261)
T PRK08936 214 --PMGYIGKPEEIAAVAAWLASS---EASYVTGITLFADGGM 250 (261)
T ss_pred --CCCCCcCHHHHHHHHHHHcCc---ccCCccCcEEEECCCc
Confidence 122466689999998876641 1345677777776653
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=135.83 Aligned_cols=193 Identities=14% Similarity=0.079 Sum_probs=130.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCeEEEEccCCC--HHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRD--ISQIK 79 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~---l~~~~~~~~~~Dl~d--~~~l~ 79 (586)
+.+++++||||+|+||+++++.|+++| ++|.++++ +++.. ..... ........+.+|+.| .+++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVAR--------HQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFE 74 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeC--------ChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHH
Confidence 456899999999999999999999999 48998444 33210 00000 012245677889875 33343
Q ss_pred HH-------h-cCCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccC
Q 007866 80 KV-------L-EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDG 139 (586)
Q Consensus 80 ~~-------l-~~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~ 139 (586)
++ + .++|+|||+||... ...++...+++|+.++.++++++.. .+-.++|++||....-
T Consensus 75 ~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-- 152 (239)
T PRK08703 75 QFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET-- 152 (239)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc--
Confidence 33 2 35799999999641 1223456789999999888887744 3456999999864320
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEE
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.+|+..|.+++.++.+ .++++.+++||.+.+|......+ +
T Consensus 153 -------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~--------~------ 205 (239)
T PRK08703 153 -------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP--------G------ 205 (239)
T ss_pred -------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC--------C------
Confidence 1233467999999999998877653 26999999999999875321110 1
Q ss_pred cCCCccccccchhHHHHHHHHHHH
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.....+...+|++.++..++.
T Consensus 206 ---~~~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK08703 206 ---EAKSERKSYGDVLPAFVWWAS 226 (239)
T ss_pred ---CCccccCCHHHHHHHHHHHhC
Confidence 111234578999999887775
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=138.14 Aligned_cols=220 Identities=11% Similarity=0.081 Sum_probs=142.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.+.+++++||||+|.||++++++|+++|. +|.+.+. |..+.. .....+ ...++.++.+|+.|++++.+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 76 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYN-------SNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKE 76 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC-------CCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 45679999999999999999999999994 8877322 111100 000000 12367899999999988877
Q ss_pred Hhc-------CCCEEEEcccCCC-------------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCcccc
Q 007866 81 VLE-------GASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVV 136 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vy 136 (586)
+++ ++|++||+|+... ...+....+++|+.+...+...+ ++.+-.++|++||....
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 156 (260)
T PRK08416 77 LFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNL 156 (260)
T ss_pred HHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccc
Confidence 664 4799999997531 11234567778887766655444 34445699999997543
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCc
Q 007866 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWT 211 (586)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~ 211 (586)
. +......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... ............
T Consensus 157 ~---------------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~- 220 (260)
T PRK08416 157 V---------------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELS- 220 (260)
T ss_pred c---------------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcC-
Confidence 1 1122357999999999999887664 489999999988754321110 011111111111
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|.+++.++.. ......|+.+.+.++.
T Consensus 221 --------~~~r~~~p~~va~~~~~l~~~---~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 221 --------PLNRMGQPEDLAGACLFLCSE---KASWLTGQTIVVDGGT 257 (260)
T ss_pred --------CCCCCCCHHHHHHHHHHHcCh---hhhcccCcEEEEcCCe
Confidence 112356799999999887641 1234678888887653
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-13 Score=131.14 Aligned_cols=197 Identities=16% Similarity=0.040 Sum_probs=138.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh---c-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---E- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l---~- 83 (586)
|++++||||+|+||++++++|++.| ++|+++++. ++.. +.+...+++++.+|+.|.+++.+++ .
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r~--------~~~~---~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG-WRVIATARD--------AAAL---AALQALGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC-CEEEEEECC--------HHHH---HHHHhccceEEEecCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999999 589885443 2211 1111224678999999999888764 2
Q ss_pred -CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccc-cccCCCCCCCCCCC
Q 007866 84 -GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHDIHNGDET 149 (586)
Q Consensus 84 -~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~v-yg~~~~~~~~~~E~ 149 (586)
++|+|||+++... ...+++..+++|+.++.++++++... +-.+++++||... ++..
T Consensus 69 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 138 (222)
T PRK06953 69 EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA---------- 138 (222)
T ss_pred CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc----------
Confidence 3899999999751 22346889999999999999988652 2247899988654 3210
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~-gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
+..+...|+.+|...+.+++.++.+. +++++.++|+.+..+... + ...+..+
T Consensus 139 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~--------------------~----~~~~~~~ 191 (222)
T PRK06953 139 ---TGTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG--------------------A----QAALDPA 191 (222)
T ss_pred ---cCCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC--------------------C----CCCCCHH
Confidence 11223469999999999999886543 788999999988654211 0 1135678
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEe
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFIT 256 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~ 256 (586)
|.++.+..++... .+...+..|...
T Consensus 192 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 216 (222)
T PRK06953 192 QSVAGMRRVIAQA---TRRDNGRFFQYD 216 (222)
T ss_pred HHHHHHHHHHHhc---CcccCceEEeeC
Confidence 9999998887632 234555554443
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=140.51 Aligned_cols=221 Identities=16% Similarity=0.126 Sum_probs=141.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
++++||||+|+||.+++++|+++|. +|.++++ +.... .....+ ...++..+.+|+.|++++.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL--------NEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5799999999999999999999995 8888443 22100 000001 12357889999999998877654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.+|+|||+|+... +..+.+..+++|+.++..+++++.. .+ -+++|++||.....
T Consensus 72 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 142 (254)
T TIGR02415 72 AEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE--------- 142 (254)
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC---------
Confidence 4799999999752 1234567899999999877766543 33 26899999975532
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE----EEcCCC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF----IIGSGE 219 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~----i~g~g~ 219 (586)
+....++|+.+|...|.+++.++.+ .++++++++|+.+..+........... ..+.+.. .+....
T Consensus 143 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 214 (254)
T TIGR02415 143 ------GNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSE--IAGKPIGEGFEEFSSEI 214 (254)
T ss_pred ------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhh--cccCchHHHHHHHHhhC
Confidence 1123568999999999998866433 479999999998865532111110000 0000000 000001
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+...+|++.++..+++.. .....|+.+.+.++
T Consensus 215 ~~~~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~d~g 250 (254)
T TIGR02415 215 ALGRPSEPEDVAGLVSFLASED---SDYITGQSILVDGG 250 (254)
T ss_pred CCCCCCCHHHHHHHHHhhcccc---cCCccCcEEEecCC
Confidence 1223678899999999887621 12345666666554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=133.68 Aligned_cols=187 Identities=12% Similarity=0.055 Sum_probs=124.7
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|.|+.+.+++++||||+|.||++++++|+++| ++|++.++... .. ...... .....+.+|+.|.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~-------~~--~~~~~~-~~~~~~~~D~~~~~~~~~ 75 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKI-------NN--SESNDE-SPNEWIKWECGKEESLDK 75 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCch-------hh--hhhhcc-CCCeEEEeeCCCHHHHHH
Confidence 34444567899999999999999999999999 58888544320 10 000011 122568899999999999
Q ss_pred HhcCCCEEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhC-------CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 81 VLEGASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~-------gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
.+.++|++||+||... ...++...+++|+.|+.++++++... +-..++..||.+...
T Consensus 76 ~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~------------ 143 (245)
T PRK12367 76 QLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ------------ 143 (245)
T ss_pred hcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC------------
Confidence 8889999999999741 23467888999999999999977542 112343444432210
Q ss_pred cccCCCCCChHHHHHHHHHHHH---Hhh---cCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALV---LFA---NNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l---~~~---~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+ .....|+.||+..+.+. .+. ....++.+..+.|+.+..+ .. + ..
T Consensus 144 ---~-~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~----~~-----------~----------~~ 194 (245)
T PRK12367 144 ---P-ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSE----LN-----------P----------IG 194 (245)
T ss_pred ---C-CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccc----cC-----------c----------cC
Confidence 1 12356999999975432 222 1236777777777654221 10 0 11
Q ss_pred ccchhHHHHHHHHHHH
Q 007866 224 FTYVENVAHAHVCAAE 239 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale 239 (586)
.+..+|+|+.++.+++
T Consensus 195 ~~~~~~vA~~i~~~~~ 210 (245)
T PRK12367 195 IMSADFVAKQILDQAN 210 (245)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4678999999998887
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.6e-13 Score=118.97 Aligned_cols=210 Identities=16% Similarity=0.111 Sum_probs=148.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|||.|.||||-+|++++++..++|| +|++ +.|++++- . ..+++...+.|+-|++++.+.+.|.|+|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH-eVTA--------ivRn~~K~--~---~~~~~~i~q~Difd~~~~a~~l~g~DaV 66 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH-EVTA--------IVRNASKL--A---ARQGVTILQKDIFDLTSLASDLAGHDAV 66 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC-eeEE--------EEeChHhc--c---ccccceeecccccChhhhHhhhcCCceE
Confidence 7899999999999999999999997 9999 78877632 1 1257889999999999999999999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
|..-+...+.++ .. .......+++..+.+|++|++.++.++.....+. . .=.+. |.-|...|...+..+|
T Consensus 67 IsA~~~~~~~~~--~~---~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~--rLvD~--p~fP~ey~~~A~~~ae 136 (211)
T COG2910 67 ISAFGAGASDND--EL---HSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-T--RLVDT--PDFPAEYKPEALAQAE 136 (211)
T ss_pred EEeccCCCCChh--HH---HHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-c--eeecC--CCCchhHHHHHHHHHH
Confidence 987665422222 11 2233677888999999999999887765421111 1 01122 4467778889999998
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccC
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
.+-.--. +.+++||.+-|+..|-|+++.. ..+-|+.....+. .--++|...|.|-|++.-+| .+..
T Consensus 137 ~L~~Lr~-~~~l~WTfvSPaa~f~PGerTg------~yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe~E-----~~~h 202 (211)
T COG2910 137 FLDSLRA-EKSLDWTFVSPAAFFEPGERTG------NYRLGGDQLLVNA--KGESRISYADYAIAVLDELE-----KPQH 202 (211)
T ss_pred HHHHHhh-ccCcceEEeCcHHhcCCccccC------ceEeccceEEEcC--CCceeeeHHHHHHHHHHHHh-----cccc
Confidence 5432222 2459999999999999976421 1122222222221 22367889999999999888 5677
Q ss_pred CCcEEEEe
Q 007866 249 AGMAFFIT 256 (586)
Q Consensus 249 ~g~~~ni~ 256 (586)
..+.|-+.
T Consensus 203 ~rqRftv~ 210 (211)
T COG2910 203 IRQRFTVA 210 (211)
T ss_pred cceeeeec
Confidence 77776653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=134.96 Aligned_cols=212 Identities=13% Similarity=0.058 Sum_probs=142.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CC-CCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LL-PDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~-~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++|+||||+|+||.++++.|+++| ++|+++ .|++++. .. .......++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCIN--------SRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 599994 4433211 00 000011357889999999988876654
Q ss_pred ------CCCEEEEcccCCCC-----CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 ------GASTVFYVDATDLN-----TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-----~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|.+||+++.... ..+....++.|+.+..++++.+... .-.++|++||......
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------ 142 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK------------ 142 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc------------
Confidence 36999999986421 1234566789999988888877553 1247999998754210
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+..+...|+.+|...+.+++.++.+ .|++++++||+.++++..... -.... .. . ....+..
T Consensus 143 --~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~---~~~~~------~~--~---~~~~~~~ 206 (238)
T PRK05786 143 --ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER---NWKKL------RK--L---GDDMAPP 206 (238)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh---hhhhh------cc--c---cCCCCCH
Confidence 1134567999999998887776643 489999999999998742110 00000 00 0 1135668
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+|+++++..++.. ......|+.+.+.++
T Consensus 207 ~~va~~~~~~~~~---~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 207 EDFAKVIIWLLTD---EADWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHHHhcc---cccCccCCEEEECCc
Confidence 9999999988752 112356777777554
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=135.36 Aligned_cols=229 Identities=15% Similarity=0.058 Sum_probs=145.8
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|....+.+++++||||+|.||++++++|+++| ++|++.++.... +.. ....+.......++..+.+|+.|.+++.+
T Consensus 1 m~~~~l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T PRK07062 1 MMQIQLEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEER-LAS--AEARLREKFPGARLLAARCDVLDEADVAA 76 (265)
T ss_pred CCccccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHH-HHH--HHHHHHhhCCCceEEEEEecCCCHHHHHH
Confidence 33334567899999999999999999999999 489885443210 000 00000111112357789999999988876
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ ++|+|||+||... ...++...+++|+.+..++.+++ ++.+..++|++||...+..
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 152 (265)
T PRK07062 77 FAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQP---- 152 (265)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCC----
Confidence 653 4799999999641 12246677888888776666554 4455679999999876421
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH----------HHHHHHhcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----------PLLVNLAKPG 209 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~----------~~l~~~~~~g 209 (586)
......|+.+|+..+.+.+.++. +.|+++++++||.+-.+...... ..+.+.....
T Consensus 153 -----------~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T PRK07062 153 -----------EPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARK 221 (265)
T ss_pred -----------CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhc
Confidence 12345799999998877776543 26899999999988655321111 0111111000
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
. ..+...+...+|+|.++..++.. ......|+++.+.++
T Consensus 222 ~-------~~p~~r~~~p~~va~~~~~L~s~---~~~~~tG~~i~vdgg 260 (265)
T PRK07062 222 K-------GIPLGRLGRPDEAARALFFLASP---LSSYTTGSHIDVSGG 260 (265)
T ss_pred C-------CCCcCCCCCHHHHHHHHHHHhCc---hhcccccceEEEcCc
Confidence 0 11122356789999999876641 123567888888765
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=136.12 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=141.3
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-----
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE----- 83 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~----- 83 (586)
|+||||+|+||.++++.|.++|. +|.++++... +........+ ...++.++.+|+.|.+++.++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-~v~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-EICVHYHSGR------SDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCCH------HHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999994 8877433210 0000000111 12468899999999998877664
Q ss_pred --CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH-----hCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~-----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
..|++||++|... ...+++..+++|+.++.++++++. +.+.+++|++||.+.+.+
T Consensus 74 ~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~----------- 142 (239)
T TIGR01831 74 HGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMG----------- 142 (239)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccC-----------
Confidence 3699999998641 234567889999999999988762 245568999999765421
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
......|+.+|...+.+.+.++.+ .|++++.++|+.+-++......+. .....+.. +...+..
T Consensus 143 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~---------~~~~~~~ 208 (239)
T TIGR01831 143 ----NRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHD-LDEALKTV---------PMNRMGQ 208 (239)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHH-HHHHHhcC---------CCCCCCC
Confidence 123457999999888777766432 589999999999987654322121 11111111 1123456
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+|+++++..++.. ......|....+.++
T Consensus 209 ~~~va~~~~~l~~~---~~~~~~g~~~~~~gg 237 (239)
T TIGR01831 209 PAEVASLAGFLMSD---GASYVTRQVISVNGG 237 (239)
T ss_pred HHHHHHHHHHHcCc---hhcCccCCEEEecCC
Confidence 89999999987651 123455666555543
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=152.50 Aligned_cols=216 Identities=16% Similarity=0.170 Sum_probs=150.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++++||||+|.||.+++++|.++| ++|++.++. .++. ...+.+ ..+...+.+|+.|++++.++++
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 337 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRD--------AEGAKKLAEAL-GDEHLSVQADITDEAAVESAFAQI 337 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHh-CCceeEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 599985443 2210 001111 2346678999999998887764
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
.+|++||+||... ...+++..+++|+.++.++.+++... +-.++|++||.+.+.
T Consensus 338 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 406 (520)
T PRK06484 338 QARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------- 406 (520)
T ss_pred HHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------
Confidence 3799999999741 12346778999999999999987654 335899999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEEcCCCccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~---~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|+..+.+.+.++.+ +|+++.++.||.+..+...... ....+...+..+ ..
T Consensus 407 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------~~ 473 (520)
T PRK06484 407 ----ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP---------LG 473 (520)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC---------CC
Confidence 1234568999999999998887543 5899999999999876422110 111111111111 12
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 474 ~~~~~~dia~~~~~l~s~---~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 474 RLGDPEEVAEAIAFLASP---AASYVNGATLTVDGGW 507 (520)
T ss_pred CCcCHHHHHHHHHHHhCc---cccCccCcEEEECCCc
Confidence 346789999999887651 1235778888887763
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.3e-13 Score=126.15 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=141.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|.++|||||+-||..++++|.+.| ++|.+ ..|+.++ ..+...+....+..+..|++|.+++.++++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl--------~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~ 75 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAG-AKVVL--------AARREERLEALADEIGAGAALALALDVTDRAAVEAAIEAL 75 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCC-CeEEE--------EeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHH
Confidence 45889999999999999999999999 59988 5555441 122223333568889999999988655543
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
.+|++||.||.. ....+++..+++|+.|..+...+. .+++-.++|.+||.+--.
T Consensus 76 ~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~---------- 145 (246)
T COG4221 76 PEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY---------- 145 (246)
T ss_pred HHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc----------
Confidence 589999999987 234568999999999988887765 445556999999986421
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH----HHHHHHhcCCCceEEEcCCCc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~----~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+....+.|+.||+....+......+ .+++++.+-||.+-....+.+- ..-.... -.
T Consensus 146 -----~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~------------y~ 208 (246)
T COG4221 146 -----PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKV------------YK 208 (246)
T ss_pred -----cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHH------------hc
Confidence 2244578999999988887666433 5899999999988443211000 0000000 01
Q ss_pred cccccchhHHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAEA 240 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~ 240 (586)
....+..+|+|+++..+++.
T Consensus 209 ~~~~l~p~dIA~~V~~~~~~ 228 (246)
T COG4221 209 GGTALTPEDIAEAVLFAATQ 228 (246)
T ss_pred cCCCCCHHHHHHHHHHHHhC
Confidence 23578899999999999983
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=140.38 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=125.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+.+++++||||+|.||.+++++|+++| ++|++. .|+.++. .+.......++.++.+|+.|.+++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~--------~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~ 82 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILP--------VRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAA 82 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHH
Confidence 457899999999999999999999999 589884 4432210 01011112357889999999998877
Q ss_pred Hhc-------CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHh---CCCCEEEEecCccccccCCCCCC
Q 007866 81 VLE-------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE---CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~---~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+++ .+|++||+||... ...+++..+++|+.|...+.+.+.. .+-.|+|++||...+... ....
T Consensus 83 ~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~-~~~~ 161 (313)
T PRK05854 83 LGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGA-INWD 161 (313)
T ss_pred HHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCC-cCcc
Confidence 654 3799999999752 2345788899999998877776542 234589999998765321 1111
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~ 193 (586)
..+++. +..+...|+.||...+.+.++++. ..|+.+.++.||.+-.+
T Consensus 162 ~~~~~~--~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 162 DLNWER--SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cccccc--cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 222222 235667899999999999887753 25799999999988654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=135.25 Aligned_cols=201 Identities=16% Similarity=0.160 Sum_probs=132.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-----
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~----- 83 (586)
|+++||||+|.||.+++++|.++| ++|.++++..+. +... . ..+. ........++.+|+.|.+++.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~r~~~~-~~~~-~-~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADG-LAQT-V-ADAR-ALGGTVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH-H-HHHH-hcCCCcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999 488884432210 0000 0 0000 0111224567899999888776554
Q ss_pred --CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh----C-CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 --GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----C-KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 --~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~----~-gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|+|||+||.. .+..+++..+++|+.++.++++++.. . ...++|++||...+.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------ 143 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV------------ 143 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC------------
Confidence 479999999864 12334678899999999999998642 2 245899999975431
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcH-------HHHHHHhcCCCceEEEcCCC
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~-------~~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.+|...+.+.+..+ ..+|+++++++||.+.++.....- ........ + .
T Consensus 144 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~---------~-~ 210 (272)
T PRK07832 144 ---ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWV---------D-R 210 (272)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHH---------H-h
Confidence 11234579999997777766554 236899999999999877422110 00000000 0 0
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
.....+..+|+|++++.+++
T Consensus 211 ~~~~~~~~~~vA~~~~~~~~ 230 (272)
T PRK07832 211 FRGHAVTPEKAAEKILAGVE 230 (272)
T ss_pred cccCCCCHHHHHHHHHHHHh
Confidence 11234789999999998886
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=127.11 Aligned_cols=284 Identities=17% Similarity=0.184 Sum_probs=186.5
Q ss_pred CCCeEEEEcCCCchHHHHHH-----HHHhcC---CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVL-----RLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~-----~L~~~g---~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l 78 (586)
+.++.+.-+++|+|+..|.. ++-+.+ ++.|++ +.|.+.++ ++.+...|..-..
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv--------~sR~pg~~---------ritw~el~~~Gip-- 71 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTV--------LSRSPGKA---------RITWPELDFPGIP-- 71 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEE--------EecCCCCc---------ccccchhcCCCCc--
Confidence 45678888999999988876 333333 147888 77776643 2233222221111
Q ss_pred HHHhcCCCEEEEcccCC--CCCCChhHHHHHHH-----HHHHHHHHHHHhCC--CCEEEEecCccccccCCCCCCCCCCC
Q 007866 79 KKVLEGASTVFYVDATD--LNTDDFYNCYMIIV-----QGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~--~~~~~~~~~~~~Nv-----~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
-.||++++.++.. .+...+...++-|+ ..|..|+++...+. .+.+|.+|..++|- +.....++|+
T Consensus 72 ----~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~--pS~s~eY~e~ 145 (315)
T KOG3019|consen 72 ----ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYV--PSESQEYSEK 145 (315)
T ss_pred ----eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEec--cccccccccc
Confidence 0345556655544 23333334444444 45678888888874 45799999999994 3333467777
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH--HhcCCCceEEEcCCCccccccch
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~--~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
.+ ....+...+.-..-|......++ ..+++++|.|.+.|.+...+ ..++- ++-.|. ..|+|.++++|||+
T Consensus 146 ~~--~qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~-~~M~lpF~~g~GG---PlGsG~Q~fpWIHv 217 (315)
T KOG3019|consen 146 IV--HQGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGAL-AMMILPFQMGAGG---PLGSGQQWFPWIHV 217 (315)
T ss_pred cc--cCChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcch-hhhhhhhhhccCC---cCCCCCeeeeeeeh
Confidence 63 35556666655666766666554 48999999999999876432 21211 222444 35899999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
+|++..+..++| ++...| +.|-..+++.+..|+.+.+..+++++. .+.+|...+. .++|+.+.
T Consensus 218 ~DL~~li~~ale-----~~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp~-~~pvP~fvvq----------A~fG~erA 280 (315)
T KOG3019|consen 218 DDLVNLIYEALE-----NPSVKG-VINGVAPNPVRNGEFCQQLGSALSRPS-WLPVPDFVVQ----------ALFGPERA 280 (315)
T ss_pred HHHHHHHHHHHh-----cCCCCc-eecccCCCccchHHHHHHHHHHhCCCc-ccCCcHHHHH----------HHhCccce
Confidence 999999999999 456666 778888999999999999999999764 4678876543 34553221
Q ss_pred CCCCCcHHHHHHhccceeechhhHhhccCCCCCC-ChHHHHHHHH
Q 007866 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTI 351 (586)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i 351 (586)
. ..-.....-..|+.+ +||+.++ .+.+++++..
T Consensus 281 ~----------~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 281 T----------VVLEGQKVLPQRALE-LGFEFKYPYVKDALRAIM 314 (315)
T ss_pred e----------EEeeCCcccchhHhh-cCceeechHHHHHHHHHh
Confidence 1 011122334577764 8999998 5788877653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-13 Score=132.88 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=145.8
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+ +-||+.++++|+++| ++|.+.++ +.........+...++..+.+|+.|.+++.++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r--------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQ--------NDRMKKSLQKLVDEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecC--------chHHHHHHHhhccCceeEEeCCCCCHHHHHHHHH
Confidence 467899999999 799999999999999 58888433 2110000011122357889999999988876653
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~ 143 (586)
..|++||+||... ...+++..+++|+.++..+.+++... .-.++|++||.+...
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------ 149 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------ 149 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------
Confidence 3799999999642 12345778899999998888877643 125899999875421
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... -+...+...+..+
T Consensus 150 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 213 (252)
T PRK06079 150 ---------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV------- 213 (252)
T ss_pred ---------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc-------
Confidence 1123467999999999998877643 689999999999966532111 1122222221111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+...+|+|+++..++.. ......|+++.+.++
T Consensus 214 --~~r~~~pedva~~~~~l~s~---~~~~itG~~i~vdgg 248 (252)
T PRK06079 214 --DGVGVTIEEVGNTAAFLLSD---LSTGVTGDIIYVDKG 248 (252)
T ss_pred --ccCCCCHHHHHHHHHHHhCc---ccccccccEEEeCCc
Confidence 12356689999999877641 124566777777665
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=133.83 Aligned_cols=163 Identities=15% Similarity=0.059 Sum_probs=117.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
|++++||||+|+||++++++|.++| ++|.++++. +.+. .......++..+.+|+.|.+++.++++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~--------~~~~--~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATVRG--------PQQD--TALQALPGVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCC--------Ccch--HHHHhccccceEEcCCCCHHHHHHHHHHhhc
Confidence 4789999999999999999999999 599995443 2211 000112357788999999988877665
Q ss_pred -CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 -GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 -~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|+|||+||.... ..+....+++|+.++.++.+++... +..+++++||.. |.... .
T Consensus 70 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----~--- 139 (225)
T PRK08177 70 QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----P--- 139 (225)
T ss_pred CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----C---
Confidence 48999999987511 2345667788999999998887543 335788888752 21100 0
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccC
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~ 193 (586)
+..+...|+.+|...|.+++.++.+ .++.+..++||.+-.+
T Consensus 140 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 140 --DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred --CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 1123457999999999999887543 5799999999988654
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=132.54 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=131.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC--CHHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR--DISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~--d~~~l~~~l- 82 (586)
..+++|+||||+|+||.+++++|+++| ++|+++++.... ..+. ...+.. ....++.++.+|+. +.+++.+++
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~-~~~~--~~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~ 84 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEK-LEAV--YDEIEA-AGGPQPAIIPLDLLTATPQNYQQLAD 84 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHH-HHHH--HHHHHh-cCCCCceEEEecccCCCHHHHHHHHH
Confidence 457899999999999999999999999 499985543210 0000 000000 11235677788886 555444433
Q ss_pred ------cCCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 83 ------EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ------~~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
..+|+|||+|+... ...++...+++|+.++.++++++. +.+.+++|++||.....
T Consensus 85 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~------- 157 (247)
T PRK08945 85 TIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ------- 157 (247)
T ss_pred HHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-------
Confidence 35899999998641 123467789999999888888764 56778999999976531
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+......|+.+|...|.+++.++.+ .|+++++++|+.+-++...... ... ..
T Consensus 158 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~--------~~~---------~~ 212 (247)
T PRK08945 158 --------GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF--------PGE---------DP 212 (247)
T ss_pred --------CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc--------Ccc---------cc
Confidence 1123457999999999988876543 4789999999988654211100 000 01
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
..+...+|++.++..++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~ 230 (247)
T PRK08945 213 QKLKTPEDIMPLYLYLMG 230 (247)
T ss_pred cCCCCHHHHHHHHHHHhC
Confidence 235678999999998764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=134.84 Aligned_cols=229 Identities=12% Similarity=0.011 Sum_probs=145.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
++.++|||| |+||++++++|. +| ++|+++|+.. ++. ...+.+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNE--------ENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 578999998 789999999996 78 5999855432 100 000111 12357789999999998887764
Q ss_pred -----CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCC------CCCCCCC-
Q 007866 84 -----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD------IHNGDET- 149 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~------~~~~~E~- 149 (586)
++|+|||+||......+++.++++|+.++.++++++... .-.+.|++||.+........ ....+..
T Consensus 71 ~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~ 150 (275)
T PRK06940 71 AQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEE 150 (275)
T ss_pred HHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccc
Confidence 489999999987556678999999999999999988653 11356777776543211000 0000000
Q ss_pred ---ccc--C---CCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH----HHHHHHhcCCCceEE
Q 007866 150 ---LTC--C---WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKFI 214 (586)
Q Consensus 150 ---~p~--~---~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~----~~l~~~~~~g~~~~i 214 (586)
.+. + ..+...|+.||+..+.+.+.++. .+|+++.++.||.+-.+...... ....+.+....
T Consensus 151 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~---- 226 (275)
T PRK06940 151 LLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKS---- 226 (275)
T ss_pred ccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhC----
Confidence 000 0 02356899999998888776543 26899999999998766321111 01111111111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...-+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 227 -----p~~r~~~peeia~~~~fL~s~---~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 227 -----PAGRPGTPDEIAALAEFLMGP---RGSFITGSDFLVDGGA 263 (275)
T ss_pred -----CcccCCCHHHHHHHHHHHcCc---ccCcccCceEEEcCCe
Confidence 112356789999998876641 1345678888887764
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-13 Score=134.12 Aligned_cols=216 Identities=13% Similarity=0.034 Sum_probs=139.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC---CCCCeEEEEccCCCHHHH----HH
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL---SSGRAEYHQVDVRDISQI----KK 80 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l---~~~~~~~~~~Dl~d~~~l----~~ 80 (586)
+.++||||+|+||++++++|.++| ++|++.+.. .++. ......+ ...++..+.+|+.|.+++ .+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~ 73 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHR-------SAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEA 73 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCC-------cHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHH
Confidence 579999999999999999999999 488874221 1110 0000001 123456789999998754 33
Q ss_pred Hh-------cCCCEEEEcccCCCC-------CC-----------ChhHHHHHHHHHHHHHHHHHHhCC----------CC
Q 007866 81 VL-------EGASTVFYVDATDLN-------TD-----------DFYNCYMIIVQGAKNVVTACRECK----------VR 125 (586)
Q Consensus 81 ~l-------~~~D~Vih~aa~~~~-------~~-----------~~~~~~~~Nv~gt~~lleaa~~~g----------vk 125 (586)
++ .++|+|||+||.... .. +....+++|+.++.++.+++.... ..
T Consensus 74 ~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (267)
T TIGR02685 74 IIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNL 153 (267)
T ss_pred HHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCe
Confidence 32 358999999996411 11 245679999999999988764321 13
Q ss_pred EEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHH
Q 007866 126 RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLL 202 (586)
Q Consensus 126 r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l 202 (586)
+++++||..... +..+..+|+.||+..|.+.+.++.+ .|+++++++||.+..+.... ...
T Consensus 154 ~iv~~~s~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~~~ 216 (267)
T TIGR02685 154 SIVNLCDAMTDQ---------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--FEV 216 (267)
T ss_pred EEEEehhhhccC---------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--hhH
Confidence 577777653320 2245668999999999999887554 68999999999987653321 111
Q ss_pred HHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+......+ .+ ..+...+|++.+++.++.. ......|+.+.+.++..
T Consensus 217 ~~~~~~~~~-----~~---~~~~~~~~va~~~~~l~~~---~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 217 QEDYRRKVP-----LG---QREASAEQIADVVIFLVSP---KAKYITGTCIKVDGGLS 263 (267)
T ss_pred HHHHHHhCC-----CC---cCCCCHHHHHHHHHHHhCc---ccCCcccceEEECCcee
Confidence 122211111 00 1235789999999987751 12356788888877643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=144.97 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=143.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|.||..+++.|.++| .+|+++|+. .....+.......+...+.+|+.|.+++.++++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~~--------~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDVP--------AAGEALAAVANRVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCC--------ccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 488885442 111001010011134678899999988877664
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCC----CEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gv----kr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+|+... ...+++..+++|+.++.++.+++..... .++|++||.+.+..
T Consensus 280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g---------- 349 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG---------- 349 (450)
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----------
Confidence 4799999999752 2345678899999999999999876433 68999999865421
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
......|+.+|...+.+.+.++. ..|+++.++.||.+-.+.... ++.......+. . ......-
T Consensus 350 -----~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~--~------~~l~~~~ 415 (450)
T PRK08261 350 -----NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA-IPFATREAGRR--M------NSLQQGG 415 (450)
T ss_pred -----CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc-cchhHHHHHhh--c------CCcCCCC
Confidence 12346899999987777766643 268999999999875322111 11111111100 0 0111223
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
-.+|+|+++..++.. ......|+++.++++.
T Consensus 416 ~p~dva~~~~~l~s~---~~~~itG~~i~v~g~~ 446 (450)
T PRK08261 416 LPVDVAETIAWLASP---ASGGVTGNVVRVCGQS 446 (450)
T ss_pred CHHHHHHHHHHHhCh---hhcCCCCCEEEECCCc
Confidence 467999999877641 1234668888887743
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-13 Score=130.49 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=138.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----C
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----G 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~----~ 84 (586)
|+++||||+|.||+++++.|.++| ++|++.++ +.++ ........++..+.+|+.|.+++.++++ +
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~r--------~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 69 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGA--------RRDD--LEVAAKELDVDAIVCDNTDPASLEEARGLFPHH 69 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEeC--------CHHH--HHHHHHhccCcEEecCCCCHHHHHHHHHHHhhc
Confidence 479999999999999999999999 58988443 3221 0000011145788999999999888775 5
Q ss_pred CCEEEEcccCCC------------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 85 ASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 85 ~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
+|++||+|+... ...++...+++|+.++.++++++... .-.++|++||...
T Consensus 70 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~--------------- 134 (223)
T PRK05884 70 LDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP--------------- 134 (223)
T ss_pred CcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC---------------
Confidence 899999987420 12356788999999999999987642 2258999998641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
.+...|+.+|+..+.+.+.++.+ +|+++..+.||.+-.+. .+... . .+.-..
T Consensus 135 ----~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~--------~~~~~--~-----------~p~~~~ 189 (223)
T PRK05884 135 ----PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG--------YDGLS--R-----------TPPPVA 189 (223)
T ss_pred ----CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh--------hhhcc--C-----------CCCCCH
Confidence 12357999999999998877553 68999999999885432 11100 0 011268
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+|++.++..++.. ......|+++.+.++.
T Consensus 190 ~~ia~~~~~l~s~---~~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 190 AEIARLALFLTTP---AARHITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHHcCc---hhhccCCcEEEeCCCe
Confidence 9999999876541 1345677888776654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=135.10 Aligned_cols=217 Identities=16% Similarity=0.072 Sum_probs=143.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++++||||+|+||++++++|+++| ++|.+.++ +.+.. .+... ...++..+.+|+.|.+++.++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDK--------SAAGLQELEAA-HGDAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHhh-cCCceEEEEeccCCHHHHHHHHHHH
Confidence 46899999999999999999999999 59998543 32210 01111 12357889999999888776664
Q ss_pred -----CCCEEEEcccCCC---C----C-----CChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCC
Q 007866 84 -----GASTVFYVDATDL---N----T-----DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -----~~D~Vih~aa~~~---~----~-----~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++|++||+||... . . .+++..+++|+.++.++++++... .-.++|++||...+.
T Consensus 74 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------ 147 (262)
T TIGR03325 74 VAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------ 147 (262)
T ss_pred HHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec------
Confidence 4799999998631 1 1 135678999999999999988653 124788888876541
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCc-H---HH------HHHHhcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQL-V---PL------LVNLAKPGWT 211 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~-~---~~------l~~~~~~g~~ 211 (586)
+......|+.+|...+.+.+.++.+. ++++..+.||.+..+..... . +. ..+....
T Consensus 148 ---------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~--- 215 (262)
T TIGR03325 148 ---------PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS--- 215 (262)
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh---
Confidence 11234579999999999998887653 38999999999876532110 0 00 0000000
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+..-+...+|+|.+++.++... ......|+++.+.++.
T Consensus 216 ------~~p~~r~~~p~eva~~~~~l~s~~--~~~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 216 ------VLPIGRMPDAEEYTGAYVFFATRG--DTVPATGAVLNYDGGM 255 (262)
T ss_pred ------cCCCCCCCChHHhhhheeeeecCC--CcccccceEEEecCCe
Confidence 011223566899999987665410 0123567777776653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=128.33 Aligned_cols=220 Identities=14% Similarity=0.064 Sum_probs=143.5
Q ss_pred CCCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCC----CCC---CCCCCC--CCCCeEEEEccCC
Q 007866 5 EAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE----SNS---LLPDSL--SSGRAEYHQVDVR 73 (586)
Q Consensus 5 ~~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~----~~~---~~~~~l--~~~~~~~~~~Dl~ 73 (586)
..++++++||||+| .||++++++|+++|. +|.+.++.. ..|.. ... .....+ ...++..+.+|+.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~ 78 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTA---YDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLT 78 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeccc---ccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 35679999999995 799999999999994 887754321 01110 000 000001 1235778899999
Q ss_pred CHHHHHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccc
Q 007866 74 DISQIKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADV 135 (586)
Q Consensus 74 d~~~l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~v 135 (586)
|.+++.++++ ..|+|||+||... ...+.+..+++|+.+...+..++ ++.+-.++|++||...
T Consensus 79 ~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~ 158 (256)
T PRK12859 79 QNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQF 158 (256)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence 9998887764 3699999999651 12245667999999988886444 3334459999999865
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 007866 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (586)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~ 212 (586)
.. +..+...|+.+|+..+.+.+.++.+ +|++++.++||.+-.+... ...........
T Consensus 159 ~~---------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~---~~~~~~~~~~~-- 218 (256)
T PRK12859 159 QG---------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT---EEIKQGLLPMF-- 218 (256)
T ss_pred CC---------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC---HHHHHHHHhcC--
Confidence 31 2234578999999999998877643 6899999999988654321 11111111111
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+...+|+|+++..++.. ......|+.+.+.++
T Consensus 219 -------~~~~~~~~~d~a~~~~~l~s~---~~~~~~G~~i~~dgg 254 (256)
T PRK12859 219 -------PFGRIGEPKDAARLIKFLASE---EAEWITGQIIHSEGG 254 (256)
T ss_pred -------CCCCCcCHHHHHHHHHHHhCc---cccCccCcEEEeCCC
Confidence 112245689999999876541 123456777776654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=133.30 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=139.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc---
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
|+++||||+|.||+.++++|.++| ++|.+.++ +++.. ...+.+ ...++..+.+|+.|.+++.++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSR--------NEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeC--------CHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999 58888443 32210 000001 11357789999999998887664
Q ss_pred ----CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHH----HH-hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTA----CR-ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~llea----a~-~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+....+++|+.++..+..+ +. +.+-.++|++||.....
T Consensus 72 ~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~-------- 143 (259)
T PRK08340 72 ELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE-------- 143 (259)
T ss_pred HhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC--------
Confidence 5899999999641 1122344566777765544433 32 23456899999987641
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc---eEEEcCCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGSGE 219 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~---~~i~g~g~ 219 (586)
+..+...|+.+|...+.+.+.++.+ .|+++..+.||.+-.+..+..+............ ........
T Consensus 144 -------~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK08340 144 -------PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERT 216 (259)
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccC
Confidence 1234568999999999998877653 5799999999987655321111100000000000 00000001
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|+++..++.. ......|++..+.++.
T Consensus 217 p~~r~~~p~dva~~~~fL~s~---~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 217 PLKRTGRWEELGSLIAFLLSE---NAEYMLGSTIVFDGAM 253 (259)
T ss_pred CccCCCCHHHHHHHHHHHcCc---ccccccCceEeecCCc
Confidence 122356789999999876641 1245678887777764
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-12 Score=124.82 Aligned_cols=205 Identities=13% Similarity=0.049 Sum_probs=136.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh---cC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---EG 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l---~~ 84 (586)
|+|+||||+|+||++++++|.++|+ ..|.. ..|..... ....++.++.+|+.|.+++.++. .+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~--------~~~~~~~~-----~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA--------TYRHHKPD-----FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEE--------EccCCccc-----cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 5899999999999999999999862 35555 23322211 12346788999999998876644 46
Q ss_pred CCEEEEcccCCCC-----C--------CChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 85 ASTVFYVDATDLN-----T--------DDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 85 ~D~Vih~aa~~~~-----~--------~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+|+|||+||.... . ......+++|+.++.++.+++.. .+..+++++||.. +.- .
T Consensus 68 id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~-------~ 138 (235)
T PRK09009 68 LDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSI-------S 138 (235)
T ss_pred CCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccc-------c
Confidence 8999999998621 0 12456788999988888776654 3446899988742 110 0
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+. +..+...|+.+|+..+.+.+.++.+ .++++..+.||.+-.+..... ... ....
T Consensus 139 ~~---~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~--------~~~---------~~~~ 198 (235)
T PRK09009 139 DN---RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPF--------QQN---------VPKG 198 (235)
T ss_pred cC---CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcch--------hhc---------cccC
Confidence 00 1134568999999999999887632 478899999998876542210 010 1112
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+...+|+|++++.++... .+...|..+.+.++
T Consensus 199 ~~~~~~~~a~~~~~l~~~~---~~~~~g~~~~~~g~ 231 (235)
T PRK09009 199 KLFTPEYVAQCLLGIIANA---TPAQSGSFLAYDGE 231 (235)
T ss_pred CCCCHHHHHHHHHHHHHcC---ChhhCCcEEeeCCc
Confidence 3567999999999888721 12346666655443
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-13 Score=124.38 Aligned_cols=159 Identities=19% Similarity=0.116 Sum_probs=118.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC----CCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP----DSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~----~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++++||||+|+||.+++++|.++|.+.|.+. .|++...... ..+ ...++..+.+|+.+.+++.+++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLL--------SRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAAL 72 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEE--------eCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 4799999999999999999999995467773 3332211000 000 1235678899999988887765
Q ss_pred cC-------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 83 EG-------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 83 ~~-------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
+. +|+|||+++... ...+++..+++|+.++.++++++++.+.+++|++||.+....
T Consensus 73 ~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~---------- 142 (180)
T smart00822 73 AAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLG---------- 142 (180)
T ss_pred HHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcC----------
Confidence 43 699999999641 224467789999999999999998888889999999765311
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~ 191 (586)
......|+.+|...+.+++.... .+++.+.+.|+.+-
T Consensus 143 -----~~~~~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 143 -----NPGQANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred -----CCCchhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 12345799999999999976554 78999999887653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=148.76 Aligned_cols=192 Identities=16% Similarity=0.132 Sum_probs=140.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|.++++ +++.. .....+ ...++.++.+|+.|.+++.+++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 439 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVAR--------NGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTV 439 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999 59998544 32210 000000 1236888999999999888777
Q ss_pred c-------CCCEEEEcccCCC------C---CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDL------N---TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~------~---~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|+|||+||... . ..+++..+++|+.|+.++..++ ++.+.+++|++||.+.++.
T Consensus 440 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---- 515 (657)
T PRK07201 440 KDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN---- 515 (657)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----
Confidence 5 5899999999641 1 1346788999999988886665 4456779999999987732
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
......|+.||+..+.+.+.++.+ .|+++++++||.+..+..... . ..
T Consensus 516 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~-----------~---~~---- 566 (657)
T PRK07201 516 -----------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT-----------K---RY---- 566 (657)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc-----------c---cc----
Confidence 123467999999999998877543 589999999999976532110 0 00
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
.....+..+++|+.++.++.
T Consensus 567 ~~~~~~~~~~~a~~i~~~~~ 586 (657)
T PRK07201 567 NNVPTISPEEAADMVVRAIV 586 (657)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 01235679999999998876
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=127.85 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=140.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC---CCCeEEEEccCCCHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS---SGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~---~~~~~~~~~Dl~d~~~l~~ 80 (586)
++++++++|||||+-||..+++.|.++| ++|++ +.|+.++= .+...+. .-.+..+.+|+.|++++.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liL--------vaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLIL--------VARREDKLEALAKELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEE--------EeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHH
Confidence 3567899999999999999999999999 49888 66665410 0111111 2357889999999988887
Q ss_pred Hhc-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+.+ .+|++||+||.. .++.+....+++|+.+...+..+ +.+.|-.++|.++|...+-
T Consensus 74 l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~----- 148 (265)
T COG0300 74 LEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI----- 148 (265)
T ss_pred HHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC-----
Confidence 664 489999999987 24556788999999987666554 4556677999999998762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+....+.|+.||+..-.+.+... +..|+.++.+-||.+.-... +. ++..... ..
T Consensus 149 ----------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~--------~~--~~~~~~~---~~ 205 (265)
T COG0300 149 ----------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF--------DA--KGSDVYL---LS 205 (265)
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc--------cc--ccccccc---cc
Confidence 22346789999998544443332 34789999999988865432 10 1110001 01
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
...-++..+|+|++.+.+++
T Consensus 206 ~~~~~~~~~~va~~~~~~l~ 225 (265)
T COG0300 206 PGELVLSPEDVAEAALKALE 225 (265)
T ss_pred chhhccCHHHHHHHHHHHHh
Confidence 23457789999999999988
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=136.41 Aligned_cols=183 Identities=17% Similarity=0.120 Sum_probs=120.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|+||||+|+||++++++|.++| ++|.++++..+. + .. .... ...++..+.+|+.|.+++.+.+.++
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~~~~-l---~~--~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~I 246 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSNSDK-I---TL--EING--EDLPVKTLHWQVGQEAALAELLEKV 246 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-H---HH--HHhh--cCCCeEEEEeeCCCHHHHHHHhCCC
Confidence 357899999999999999999999999 489885443210 0 00 0000 1124667889999999999999999
Q ss_pred CEEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHh----CCC---C-EEEEecCccccccCCCCCCCCCCCcccC
Q 007866 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRE----CKV---R-RLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~----~gv---k-r~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
|++||+||... +..+++..+++|+.|+.++++++.. .+- + .+|.+|+... .
T Consensus 247 DiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-----------------~ 309 (406)
T PRK07424 247 DILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-----------------N 309 (406)
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-----------------c
Confidence 99999998752 2234678899999999999998753 221 2 3455544211 0
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
......|+.||...+.+........+..+..+.| ||..+.. .....+..+|+|+.
T Consensus 310 ~~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~----gp~~t~~---------------------~~~~~~spe~vA~~ 364 (406)
T PRK07424 310 PAFSPLYELSKRALGDLVTLRRLDAPCVVRKLIL----GPFKSNL---------------------NPIGVMSADWVAKQ 364 (406)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCCceEEEEe----CCCcCCC---------------------CcCCCCCHHHHHHH
Confidence 1123469999999988653322223433333333 3322111 00123678999999
Q ss_pred HHHHHH
Q 007866 234 HVCAAE 239 (586)
Q Consensus 234 i~~ale 239 (586)
++.+++
T Consensus 365 il~~i~ 370 (406)
T PRK07424 365 ILKLAK 370 (406)
T ss_pred HHHHHH
Confidence 999887
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=129.05 Aligned_cols=223 Identities=11% Similarity=-0.020 Sum_probs=145.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+|.||+++++.|+++|. +|.++++. +++. .....+ ...++..+.+|+.|.+++.++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD--------ADALEALAADLRAAHGVDVAVHALDLSSPEAREQL 75 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC--------HHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 3568999999999999999999999995 99985443 2210 000001 123578899999999998877
Q ss_pred hc---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 82 LE---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 82 l~---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++ ++|++||++|... ...+++..+++|+.+..++.+++. +.+-.++|++||.....
T Consensus 76 ~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~---------- 145 (259)
T PRK06125 76 AAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN---------- 145 (259)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC----------
Confidence 75 4899999999641 123457788999999988888763 33445899998864320
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC---CCc--eEEEcCCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP---GWT--KFIIGSGE 219 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~---g~~--~~i~g~g~ 219 (586)
+..+...|+.+|...+.+.+.++. ..|+++..+.||.+-.+.. ..+...... +.+ ........
T Consensus 146 -----~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (259)
T PRK06125 146 -----PDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRM----LTLLKGRARAELGDESRWQELLAGL 216 (259)
T ss_pred -----CCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHH----HHHHHhhhhcccCCHHHHHHHhccC
Confidence 123345789999999988887643 3689999999998875521 111100000 000 00000001
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|.+++.++.. ......|..+.+.++.
T Consensus 217 ~~~~~~~~~~va~~~~~l~~~---~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 217 PLGRPATPEEVADLVAFLASP---RSGYTSGTVVTVDGGI 253 (259)
T ss_pred CcCCCcCHHHHHHHHHHHcCc---hhccccCceEEecCCe
Confidence 112356789999998877641 1235678888887764
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=127.07 Aligned_cols=223 Identities=18% Similarity=0.142 Sum_probs=144.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+|.||+.+++.|.++|+ +|.+.++..... ..+..+. ......+ ...++..+.+|+.|.+++.++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 4578999999999999999999999995 888865532100 0000010 0000011 123567889999998887766
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC------CCEEEEecCccccc
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK------VRRLVYNSTADVVF 137 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g------vkr~I~~SS~~vyg 137 (586)
++ .+|++||+||... ...+++..+++|+.++.++.+++.. .+ -.++|++||.+.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 53 4799999999752 2345678899999999888877642 11 24899999976541
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
+......|+.+|+..+.+.+.++.+ +|+++..+.|+ +-.+ .............
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~----~~~~~~~~~~~~~---- 218 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR----MTETVFAEMMAKP---- 218 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC----cchhhHHHHHhcC----
Confidence 1123467999999999988876543 68999999997 4222 1111111111100
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
. .....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 219 -~--~~~~~~~~pedva~~~~~L~s~---~~~~itG~~i~vdgG~ 257 (286)
T PRK07791 219 -E--EGEFDAMAPENVSPLVVWLGSA---ESRDVTGKVFEVEGGK 257 (286)
T ss_pred -c--ccccCCCCHHHHHHHHHHHhCc---hhcCCCCcEEEEcCCc
Confidence 0 1111345799999999876641 1245678888887764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=127.79 Aligned_cols=220 Identities=14% Similarity=0.111 Sum_probs=142.9
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||++ -||+.++++|.++| ++|.+.++... ..+... ...... .....+.+|+.|.+++.++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~--~~~~~~--~~~~~~--g~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEA--LGKRVK--PLAESL--GSDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchH--HHHHHH--HHHHhc--CCceEEeCCCCCHHHHHHHHH
Confidence 4568999999997 99999999999999 58888543210 000000 000011 123468899999988876663
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~ 143 (586)
.+|++||+||... ...+++..+++|+.++.++.+++... .-.++|++||.+...
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~------ 151 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR------ 151 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc------
Confidence 4799999999642 12346778889999998888766532 115899999875421
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+......+ ...+...+..+
T Consensus 152 ---------~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p------- 215 (271)
T PRK06505 152 ---------VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSP------- 215 (271)
T ss_pred ---------cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCC-------
Confidence 1123457999999998888777543 68999999999987653221111 11111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 216 --~~r~~~peeva~~~~fL~s~---~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 216 --LRRTVTIDEVGGSALYLLSD---LSSGVTGEIHFVDSGY 251 (271)
T ss_pred --ccccCCHHHHHHHHHHHhCc---cccccCceEEeecCCc
Confidence 11245689999999877641 1234678888887764
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=146.78 Aligned_cols=164 Identities=17% Similarity=0.110 Sum_probs=121.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|.++|+ +|+++++ +.++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 383 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGA-EVVASDI--------DEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFA 383 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 3468999999999999999999999994 8988443 32210 000001 1235788999999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCC-CCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~g-vkr~I~~SS~~vyg~~~~~~ 143 (586)
+ .+|+|||+||... ...+.+..+++|+.|+.++.+++. +.+ -.++|++||.+.|..
T Consensus 384 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----- 458 (582)
T PRK05855 384 EWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP----- 458 (582)
T ss_pred HHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-----
Confidence 5 3799999999852 233567788899999999888753 334 258999999988742
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
..+...|+.||+..|.+.+.++. .+|++++++.||.+-.+
T Consensus 459 ----------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ----------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 13456899999998888776543 36899999999988554
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=125.42 Aligned_cols=220 Identities=16% Similarity=0.082 Sum_probs=142.8
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+ +-||.+++++|.++| ++|.+.++.. |..+. ..+...+...++..+.+|+.|.+++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGE-----RLEKEVRELADTLEGQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcc-----cchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHH
Confidence 457899999997 899999999999999 5888854321 11110 00111112346788999999998887666
Q ss_pred c-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ..|++||+||... +...+...+++|+.+..++.+++... .-.++|++||....-
T Consensus 79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----- 153 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER----- 153 (257)
T ss_pred HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc-----
Confidence 3 3799999998642 11124557788999988877776543 124899999875421
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+..... .+.........
T Consensus 154 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 215 (257)
T PRK08594 154 ----------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEER-------- 215 (257)
T ss_pred ----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhc--------
Confidence 112345799999999999887754 3589999999998865421110 00111111110
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+...+...+|+|++++.++.. ......|+.+.+.++
T Consensus 216 -~p~~r~~~p~~va~~~~~l~s~---~~~~~tG~~~~~dgg 252 (257)
T PRK08594 216 -APLRRTTTQEEVGDTAAFLFSD---LSRGVTGENIHVDSG 252 (257)
T ss_pred -CCccccCCHHHHHHHHHHHcCc---ccccccceEEEECCc
Confidence 1122356789999999877641 123466777777665
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=125.78 Aligned_cols=225 Identities=13% Similarity=0.057 Sum_probs=144.8
Q ss_pred CCCCCCCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l 78 (586)
|....+.+|+++||||++ -||+.+++.|.++| ++|.+.++... .. +....+.... .....+.+|+.|++++
T Consensus 1 ~~~~~~~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~~~--~~--~~~~~l~~~~--g~~~~~~~Dv~~~~~v 73 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQSEV--LE--KRVKPLAEEI--GCNFVSELDVTNPKSI 73 (260)
T ss_pred CCCcccCCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCchH--HH--HHHHHHHHhc--CCceEEEccCCCHHHH
Confidence 444445678999999997 79999999999999 58887443210 00 0000011111 1223578999999888
Q ss_pred HHHhc-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCcccccc
Q 007866 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFD 138 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~ 138 (586)
.++++ .+|++||+|+... +..++...+++|+.+...+++++... .-.++|++||.+...
T Consensus 74 ~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~- 152 (260)
T PRK06603 74 SNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK- 152 (260)
T ss_pred HHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc-
Confidence 77664 3799999998631 12346778999999999988876432 124899999975421
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKF 213 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~ 213 (586)
+......|+.||+..+.+.+.++. .+|+++.++.||.+-.+.... -.+...+......
T Consensus 153 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--- 215 (260)
T PRK06603 153 --------------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATA--- 215 (260)
T ss_pred --------------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcC---
Confidence 112245799999999998887754 368999999999986542110 0111111111111
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|.+++.++.. ......|+.+.+.++.
T Consensus 216 ------p~~r~~~pedva~~~~~L~s~---~~~~itG~~i~vdgG~ 252 (260)
T PRK06603 216 ------PLKRNTTQEDVGGAAVYLFSE---LSKGVTGEIHYVDCGY 252 (260)
T ss_pred ------CcCCCCCHHHHHHHHHHHhCc---ccccCcceEEEeCCcc
Confidence 112356789999999987751 1234677888887653
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-12 Score=125.20 Aligned_cols=219 Identities=13% Similarity=0.089 Sum_probs=141.2
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++|||| ++-||+++++.|.++| ++|.+.++. .|..+. ..+.... .....+.+|+.|.+++.+++
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQG-AELAFTYVV-----DKLEERVRKMAAEL--DSELVFRCDVASDDEINQVF 75 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCc-----HHHHHHHHHHHhcc--CCceEEECCCCCHHHHHHHH
Confidence 45789999997 6799999999999999 588874321 111110 0010111 23457899999999888766
Q ss_pred c-------CCCEEEEcccCCCC---------C---CChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCC
Q 007866 83 E-------GASTVFYVDATDLN---------T---DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~---------~---~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~ 140 (586)
+ ++|++||+||.... + .+++..+++|+.++..+.+++... +-.++|++||...+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~--- 152 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR--- 152 (261)
T ss_pred HHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---
Confidence 3 48999999997521 1 123455678888887777765431 225899999876531
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEE
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFII 215 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~ 215 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .+...+...+..
T Consensus 153 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 215 (261)
T PRK08690 153 ------------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHN----- 215 (261)
T ss_pred ------------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcC-----
Confidence 112346799999999988776642 3689999999999865422111 011111111111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|+++..++.. ......|+.+.+.++.
T Consensus 216 ----p~~r~~~peevA~~v~~l~s~---~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 216 ----PLRRNVTIEEVGNTAAFLLSD---LSSGITGEITYVDGGY 252 (261)
T ss_pred ----CCCCCCCHHHHHHHHHHHhCc---ccCCcceeEEEEcCCc
Confidence 122366799999999987751 1245678888887764
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=124.85 Aligned_cols=219 Identities=14% Similarity=0.109 Sum_probs=143.2
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+ +-||+.++++|+++| ++|.+.++... ..+........+ .....+.+|+.|.+++.++++
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~----~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDK----ARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChh----hHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHH
Confidence 457899999998 499999999999999 58888554321 000000011111 234578899999988876653
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~ 143 (586)
..|++||+||... +..+++..+++|+.++.++.+++... .-.++|++||.....
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------ 154 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------ 154 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 4799999998642 12346788999999999998877543 124799999864320
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... .....+...+..
T Consensus 155 ---------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK07533 155 ---------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERA-------- 217 (258)
T ss_pred ---------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcC--------
Confidence 1123457999999998888776542 689999999998865432111 111222221111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+...+...+|+|++++.++.. ......|+.+.+.++
T Consensus 218 -p~~r~~~p~dva~~~~~L~s~---~~~~itG~~i~vdgg 253 (258)
T PRK07533 218 -PLRRLVDIDDVGAVAAFLASD---AARRLTGNTLYIDGG 253 (258)
T ss_pred -CcCCCCCHHHHHHHHHHHhCh---hhccccCcEEeeCCc
Confidence 112356789999999877641 124567888877665
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=124.00 Aligned_cols=222 Identities=12% Similarity=0.075 Sum_probs=143.7
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+ +-||+.++++|.++| ++|.+.++... ..|..+. ..+... ..++..+.+|+.|.+++.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDE--KGRFEKKVRELTEP--LNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcc--cchHHHHHHHHHhc--cCcceEeecCcCCHHHHHHHH
Confidence 356899999986 799999999999999 48877433211 0111110 001000 123567899999999887766
Q ss_pred c-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|++||+||... +..+++..+++|+.++..+.+++... .-.++|++||.....
T Consensus 79 ~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~----- 153 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR----- 153 (258)
T ss_pred HHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc-----
Confidence 4 4799999999641 12345778899999998888876532 125899999975321
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+..... .+...+.....
T Consensus 154 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 215 (258)
T PRK07370 154 ----------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEK-------- 215 (258)
T ss_pred ----------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhc--------
Confidence 112346799999999999887754 3689999999999865422111 01111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+...+|++.++..++.. ......|+++.+.++.
T Consensus 216 -~p~~r~~~~~dva~~~~fl~s~---~~~~~tG~~i~vdgg~ 253 (258)
T PRK07370 216 -APLRRTVTQTEVGNTAAFLLSD---LASGITGQTIYVDAGY 253 (258)
T ss_pred -CCcCcCCCHHHHHHHHHHHhCh---hhccccCcEEEECCcc
Confidence 1122356689999999877641 1234667888876653
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-12 Score=118.19 Aligned_cols=218 Identities=20% Similarity=0.117 Sum_probs=155.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
-+.++.|+.||.|+++++...+.+| .|.. +.|+..+..+.++ ...+.++.+|.-...-+...+.++..|
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~-svgi--------lsen~~k~~l~sw--~~~vswh~gnsfssn~~k~~l~g~t~v 121 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVH-SVGI--------LSENENKQTLSSW--PTYVSWHRGNSFSSNPNKLKLSGPTFV 121 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhce-eeeE--------eecccCcchhhCC--CcccchhhccccccCcchhhhcCCccc
Confidence 3688999999999999999999997 7777 5666553323222 246778888877666567778899999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
+-|++.. .+.....++|-....+-..++.++||++|+|+|-.. ||. + +..|. .|-.+|.++|
T Consensus 122 ~e~~ggf---gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--~-----------~~i~r-GY~~gKR~AE 183 (283)
T KOG4288|consen 122 YEMMGGF---GNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--P-----------PLIPR-GYIEGKREAE 183 (283)
T ss_pred HHHhcCc---cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--C-----------Cccch-hhhccchHHH
Confidence 9988764 455778888988889999999999999999999653 211 0 22333 8999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCC-------CcHHHHHHHhcCCCc--e-EEEcCCCccccccchhHHHHHHHHHH
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDT-------QLVPLLVNLAKPGWT--K-FIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~-------~~~~~l~~~~~~g~~--~-~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
..+... ++++-+++|||.+||.+.- ..+...+.+..++-+ . .++--|.-..+.+.++++|.+.+.|+
T Consensus 184 ~Ell~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 998875 5577889999999998432 112222333322221 0 12233567789999999999999988
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHH
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~ 272 (586)
+ .|+..| .+++.||.++-.+
T Consensus 261 ~-----dp~f~G---------vv~i~eI~~~a~k 280 (283)
T KOG4288|consen 261 E-----DPDFKG---------VVTIEEIKKAAHK 280 (283)
T ss_pred c-----CCCcCc---------eeeHHHHHHHHHH
Confidence 8 454433 4666676665443
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=122.32 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=141.1
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||++ -||+.+++.|.++| ++|.+.++.. +..+ ...+... .+....+.+|+.|.+++.+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~~-----~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~ 75 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-----KLKGRVEEFAAQ--LGSDIVLPCDVAEDASIDAMF 75 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecch-----hHHHHHHHHHhc--cCCceEeecCCCCHHHHHHHH
Confidence 4578999999985 89999999999999 4888754321 0000 0001111 124567889999999888766
Q ss_pred c-------CCCEEEEcccCCCC------------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~------------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~ 141 (586)
+ .+|++||+||.... ..+++..+++|+.+...+.+++... .-.++|++||.+...
T Consensus 76 ~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~---- 151 (262)
T PRK07984 76 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 151 (262)
T ss_pred HHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----
Confidence 3 37999999996421 1134566788999888887776432 124799999875320
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g 216 (586)
+......|+.||...+.+.+.++. .+|+++.++-||.+-.+.... -.....+...+..
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (262)
T PRK07984 152 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT------ 214 (262)
T ss_pred -----------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcC------
Confidence 112235799999999999887764 368999999999886431110 0111111111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|.+++.++.. ......|+.+.+.++.
T Consensus 215 ---p~~r~~~pedva~~~~~L~s~---~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 215 ---PIRRTVTIEDVGNSAAFLCSD---LSAGISGEVVHVDGGF 251 (262)
T ss_pred ---CCcCCCCHHHHHHHHHHHcCc---ccccccCcEEEECCCc
Confidence 112356789999999877651 1235677888877663
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-12 Score=126.00 Aligned_cols=197 Identities=13% Similarity=0.097 Sum_probs=129.9
Q ss_pred eEEEEcCCCchHHHHHHHHHh----cCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 10 TCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~----~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.++||||+|.||.+++++|.+ .| ++|.+++ |+.+.. .+.......++..+.+|+.|.+++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~--------r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~ 72 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSA--------RNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQ 72 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEE--------cCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHH
Confidence 589999999999999999997 68 5888844 332210 01110112357889999999998877
Q ss_pred HhcC-----------CCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHHHhC-----C-CCEEEEecCc
Q 007866 81 VLEG-----------ASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC-----K-VRRLVYNSTA 133 (586)
Q Consensus 81 ~l~~-----------~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa~~~-----g-vkr~I~~SS~ 133 (586)
+++. .|+|||+||.... ..+.+..+++|+.++..+.+++... + -.++|++||.
T Consensus 73 ~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~ 152 (256)
T TIGR01500 73 LLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL 152 (256)
T ss_pred HHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCH
Confidence 6632 2599999996411 1235678999999988777665432 2 2589999998
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----HHHHHH
Q 007866 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----PLLVNL 205 (586)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-----~~l~~~ 205 (586)
+.+. +......|+.||...+.+.+.++.+ .|+.+.++.||.+-.+...... +.....
T Consensus 153 ~~~~---------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 217 (256)
T TIGR01500 153 CAIQ---------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKG 217 (256)
T ss_pred HhCC---------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHH
Confidence 6541 1123467999999999998876443 6899999999988544211000 000000
Q ss_pred hcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
..+. .....+...+|+|.+++.+++
T Consensus 218 ~~~~---------~~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 218 LQEL---------KAKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred HHHH---------HhcCCCCCHHHHHHHHHHHHh
Confidence 1000 011225678999999998876
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=123.79 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=142.5
Q ss_pred CCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+|+++||||+ +-||+.++++|.++| ++|.+.++... .. .........+. .. ..+.+|+.|.+++.++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~--~~--~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEA--LK--KRVEPIAQELG-SD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHH--HH--HHHHHHHHhcC-Cc-eEEEecCCCHHHHHHHHHH
Confidence 46899999997 799999999999999 58888544310 00 00000111111 12 578899999988877653
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
.+|++||+||... ...+++..+++|+.++.++.+++... .-.++|++||.+...
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~------- 149 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK------- 149 (274)
T ss_pred HHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-------
Confidence 4799999999641 12346778999999998888876542 125899999875321
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.||+..+.+.+.++.+ +|+++.++.||.+-.+....... ......... .
T Consensus 150 --------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 212 (274)
T PRK08415 150 --------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEIN---------A 212 (274)
T ss_pred --------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhh---------C
Confidence 1122457999999999888877643 68999999999886542111000 000000000 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|.+++.++... .....|+.+.+.++.
T Consensus 213 pl~r~~~pedva~~v~fL~s~~---~~~itG~~i~vdGG~ 249 (274)
T PRK08415 213 PLKKNVSIEEVGNSGMYLLSDL---SSGVTGEIHYVDAGY 249 (274)
T ss_pred chhccCCHHHHHHHHHHHhhhh---hhcccccEEEEcCcc
Confidence 1123567899999998776511 235678888887764
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=127.35 Aligned_cols=205 Identities=22% Similarity=0.231 Sum_probs=128.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCC-CCCCCCeEEEEccCCCHHH-HHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPD-SLSSGRAEYHQVDVRDISQ-IKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~-~l~~~~~~~~~~Dl~d~~~-l~~~l 82 (586)
..+++|+|+||||.+|+-+++.|+++| +.|++ +.|+.++.. +.. .........+..|.....+ +..+.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra--------~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~ 147 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG-FSVRA--------LVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLV 147 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC-Ceeee--------eccChhhhhhhhcccccccccceeeeccccccchhhhhh
Confidence 356799999999999999999999999 69999 777765321 111 1223445555655544322 22333
Q ss_pred c----CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 83 E----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 83 ~----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+ +..+|+-+++..+...+...-+.+...|++|+++||+.+|++|++++||.+.- .. +...+ ......
T Consensus 148 ~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~---~~-----~~~~~-~~~~~~ 218 (411)
T KOG1203|consen 148 EAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT---KF-----NQPPN-ILLLNG 218 (411)
T ss_pred hhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc---cc-----CCCch-hhhhhh
Confidence 2 34567777666543323344557889999999999999999999999887652 10 11000 001122
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
.+-.+|..+|.++++ .|++.+++||+...-...... + .......-...+++.. -.+...|+|+..++++
T Consensus 219 ~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~--~~i~r~~vael~~~al 287 (411)
T KOG1203|consen 219 LVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQR-E----VVVDDEKELLTVDGGA--YSISRLDVAELVAKAL 287 (411)
T ss_pred hhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCcc-e----ecccCccccccccccc--eeeehhhHHHHHHHHH
Confidence 344788888888886 799999999998874322110 0 0000111011112111 3566889999999988
Q ss_pred H
Q 007866 239 E 239 (586)
Q Consensus 239 e 239 (586)
.
T Consensus 288 l 288 (411)
T KOG1203|consen 288 L 288 (411)
T ss_pred h
Confidence 7
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=120.82 Aligned_cols=218 Identities=14% Similarity=0.044 Sum_probs=140.9
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++|||| ++-||.+++++|.++| ++|++.++.. .++. ......+ ..++..+.+|+.|.+++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~------~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGR------ALRLTERIAKRL-PEPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCcc------chhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHH
Confidence 45689999999 8999999999999999 5888854321 0110 0011111 125678999999998887665
Q ss_pred c-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|++||+||... +..+....+++|+.++.++.+++... .-.++|++||....
T Consensus 77 ~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------ 150 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------ 150 (256)
T ss_pred HHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc------
Confidence 3 4899999999752 11234557899999998888776542 12478888754221
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
.......|+.||+..+.+.+.++.+ +|+++.++.||.+-.+..... .....+...+..+.
T Consensus 151 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----- 215 (256)
T PRK07889 151 ----------AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL----- 215 (256)
T ss_pred ----------cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc-----
Confidence 1122456999999999888776543 689999999998865432111 01111111111110
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+.+...+|+|++++.++.. ......|+.+.+.++
T Consensus 216 ---~~~~~~p~evA~~v~~l~s~---~~~~~tG~~i~vdgg 250 (256)
T PRK07889 216 ---GWDVKDPTPVARAVVALLSD---WFPATTGEIVHVDGG 250 (256)
T ss_pred ---ccccCCHHHHHHHHHHHhCc---ccccccceEEEEcCc
Confidence 01356789999999977651 123456777777665
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=122.22 Aligned_cols=220 Identities=14% Similarity=0.064 Sum_probs=143.2
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+ +-||..+++.|.++| ++|.+.++... . . +....+.+.+ .....+.+|+.|.+++.++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~r~~~--~-~-~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTYQGDA--L-K-KRVEPLAAEL--GAFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCchH--H-H-HHHHHHHHhc--CCceEEecCCCCHHHHHHHHH
Confidence 346899999997 799999999999999 58887432110 0 0 0000011111 234568999999988887664
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~ 143 (586)
..|++||+||... ...+++..+++|+.++.++++++... +-.++|++||.+...
T Consensus 81 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------ 154 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK------ 154 (272)
T ss_pred HHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc------
Confidence 3799999999642 12346788999999999999877653 225899999864320
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..... ............
T Consensus 155 ---------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 217 (272)
T PRK08159 155 ---------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA-------- 217 (272)
T ss_pred ---------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCC--------
Confidence 1123457999999998888776543 689999999998865321100 000001000011
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..-+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 218 -p~~r~~~peevA~~~~~L~s~---~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 218 -PLRRTVTIEEVGDSALYLLSD---LSRGVTGEVHHVDSGY 254 (272)
T ss_pred -cccccCCHHHHHHHHHHHhCc---cccCccceEEEECCCc
Confidence 111246789999999887751 1245678888888764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-11 Score=121.24 Aligned_cols=219 Identities=11% Similarity=0.033 Sum_probs=142.4
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++|||| ++-||..++++|.++| ++|.+.++. .|..+. ..+...+ .....+.+|+.|++++.+++
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVG-----DRFKDRITEFAAEF--GSDLVFPCDVASDEQIDALF 75 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccc-----hHHHHHHHHHHHhc--CCcceeeccCCCHHHHHHHH
Confidence 45689999996 6799999999999999 588875432 111110 0010111 12346889999999888776
Q ss_pred c-------CCCEEEEcccCCCC------------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~------------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~ 141 (586)
+ ..|++||+||.... ..+++..+++|+.++..+.+++... +-.++|++||.+..-
T Consensus 76 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~---- 151 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER---- 151 (260)
T ss_pred HHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc----
Confidence 4 47999999987421 1245567899999999888877653 235899999875420
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g 216 (586)
+......|+.||+..+.+.+.++. .+|+++..+.||.+-.+..... .....+......
T Consensus 152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 214 (260)
T PRK06997 152 -----------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNA------ 214 (260)
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcC------
Confidence 112245799999999988887654 3689999999998865421111 011111111110
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+...+|+|+++..++.. ......|+++.+.++.
T Consensus 215 ---p~~r~~~pedva~~~~~l~s~---~~~~itG~~i~vdgg~ 251 (260)
T PRK06997 215 ---PLRRNVTIEEVGNVAAFLLSD---LASGVTGEITHVDSGF 251 (260)
T ss_pred ---cccccCCHHHHHHHHHHHhCc---cccCcceeEEEEcCCh
Confidence 112356789999999987751 1245678888876653
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-12 Score=137.65 Aligned_cols=215 Identities=19% Similarity=0.154 Sum_probs=143.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++++||||++.||..++++|.++| ++|.+++ |+.++. .....+ ..++..+.+|+.|++++.++++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~--------r~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~ 73 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVAD--------RNVERARERADSL-GPDHHALAMDVSDEAQIREGFEQL 73 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHHHh-CCceeEEEeccCCHHHHHHHHHHH
Confidence 46899999999999999999999999 5998844 332210 000111 2356779999999988877664
Q ss_pred -----CCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHHHHhC----CCC-EEEEecCccccccCCCCCC
Q 007866 84 -----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----KVR-RLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~lleaa~~~----gvk-r~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||.. .+..+++..+++|+.++.++.+++... +-. ++|++||......
T Consensus 74 ~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~------ 147 (520)
T PRK06484 74 HREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVA------ 147 (520)
T ss_pred HHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCC------
Confidence 489999999862 123346789999999999998877653 333 8999999865421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHH--H-HHHhcCCCceEEEcCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPL--L-VNLAKPGWTKFIIGSG 218 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~--l-~~~~~~g~~~~i~g~g 218 (586)
......|+.+|+..+.+.+.++.+ .|++++++.|+.+-.+........ . ....... +
T Consensus 148 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~---- 210 (520)
T PRK06484 148 ---------LPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSR----I---- 210 (520)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhc----C----
Confidence 123457999999999988876543 579999999998865532111000 0 0000000 0
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
....+...+|+|+++..++.. ......|+.+.+.++
T Consensus 211 -~~~~~~~~~~va~~v~~l~~~---~~~~~~G~~~~~~gg 246 (520)
T PRK06484 211 -PLGRLGRPEEIAEAVFFLASD---QASYITGSTLVVDGG 246 (520)
T ss_pred -CCCCCcCHHHHHHHHHHHhCc---cccCccCceEEecCC
Confidence 111245689999998876641 123445666665543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=127.07 Aligned_cols=178 Identities=12% Similarity=0.021 Sum_probs=118.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++++||||++.||.+++++|+++|.++|.+.+ |+.++. ...+.+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~--------r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 73 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMAC--------RDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQ 73 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEe--------CCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3679999999999999999999999933888843 332210 000111 12357788999999988776653
Q ss_pred -------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHH----hCC--CCEEEEecCccccccCCCC
Q 007866 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACR----ECK--VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~----~~g--vkr~I~~SS~~vyg~~~~~ 142 (586)
+.|++||+||.... ..+.+..+++|+.++..+..++. +.+ -.|+|++||...+......
T Consensus 74 ~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~ 153 (314)
T TIGR01289 74 QFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAG 153 (314)
T ss_pred HHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCC
Confidence 48999999996421 23457788999999877765543 332 3699999999876321000
Q ss_pred --CCCCCCC----------------cccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCccc
Q 007866 143 --IHNGDET----------------LTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (586)
Q Consensus 143 --~~~~~E~----------------~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G 192 (586)
..+.+.+ ...+..+...|+.||+....+.+.++++ .|+.+++++||.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 225 (314)
T TIGR01289 154 NVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD 225 (314)
T ss_pred cCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence 0000000 0012345678999999977777666432 479999999999853
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.4e-12 Score=128.72 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=129.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC--HHH---HHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQ---IKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d--~~~---l~~~ 81 (586)
.+++++||||||.||++++++|.++| ++|.++++..+. +... ...+.......++..+.+|+.+ .+. +.+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~-l~~~--~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~ 127 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDK-LKDV--SDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKET 127 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHH-HHHH--HHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHH
Confidence 36899999999999999999999999 489985443210 0000 0001011112356778899974 333 3344
Q ss_pred hcC--CCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 82 LEG--ASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 82 l~~--~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+.+ +|++||+||... +..+.+..+++|+.|+.++.+++. +.+..++|++||.+.+..+
T Consensus 128 ~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~------- 200 (320)
T PLN02780 128 IEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP------- 200 (320)
T ss_pred hcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-------
Confidence 444 569999999752 122346789999999999888764 4566799999998764210
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+......|+.||+..+.+.+.++.+ .|++++++.||.+-.+... .... . ..
T Consensus 201 ------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~---------~~~~----------~-~~ 254 (320)
T PLN02780 201 ------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS---------IRRS----------S-FL 254 (320)
T ss_pred ------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc---------ccCC----------C-CC
Confidence 0122568999999999988877543 5899999999988644211 0000 0 11
Q ss_pred ccchhHHHHHHHHHHH
Q 007866 224 FTYVENVAHAHVCAAE 239 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale 239 (586)
....+++|+.++.++.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 3468899999887775
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-11 Score=116.31 Aligned_cols=204 Identities=13% Similarity=0.030 Sum_probs=135.6
Q ss_pred HHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----CCCEEEEcccCCCCCC
Q 007866 24 LVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----GASTVFYVDATDLNTD 99 (586)
Q Consensus 24 lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~----~~D~Vih~aa~~~~~~ 99 (586)
++++|+++| ++|+++| |...+. ...+++.+|+.|.+++.++++ ++|+|||+||.. ...
T Consensus 1 ~a~~l~~~G-~~Vv~~~--------r~~~~~--------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~-~~~ 62 (241)
T PRK12428 1 TARLLRFLG-ARVIGVD--------RREPGM--------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVP-GTA 62 (241)
T ss_pred ChHHHHhCC-CEEEEEe--------CCcchh--------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCC-CCC
Confidence 468899999 4999844 433211 113567899999999988876 489999999976 345
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCc--------------ccCCCCCChHHHH
Q 007866 100 DFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETL--------------TCCWKFQDLMCDL 163 (586)
Q Consensus 100 ~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~--------------p~~~~p~~~Y~~s 163 (586)
+++..+++|+.++.++++++... +-.++|++||...|+... ..+..|.. ..+..+..+|+.|
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s 140 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQ--RLELHKALAATASFDEGAAWLAAHPVALATGYQLS 140 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcccc--chHHHHhhhccchHHHHHHhhhccCCCcccHHHHH
Confidence 68899999999999999988754 225999999999885321 11111110 0123456789999
Q ss_pred HHHHHHHHHhhc----CCCCceEEEEeCCCcccCCCCCcHHHHH-HHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 164 KAQAEALVLFAN----NIDGLLTCALRPSNVFGPGDTQLVPLLV-NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 164 K~~~E~~l~~~~----~~~gl~~~ilRp~~v~G~~~~~~~~~l~-~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
|...+.+.+.++ ..+|+++.+++||.+.++.......... ....+ . ..+...+...+|+|++++.++
T Consensus 141 K~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~pe~va~~~~~l~ 212 (241)
T PRK12428 141 KEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVDS-D-------AKRMGRPATADEQAAVLVFLC 212 (241)
T ss_pred HHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhhhh-c-------ccccCCCCCHHHHHHHHHHHc
Confidence 999999887776 4468999999999998874322111000 00000 0 011123567899999998766
Q ss_pred HHhhcccccCCCcEEEEeCC
Q 007866 239 EALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~ 258 (586)
.. ......|+...+.++
T Consensus 213 s~---~~~~~~G~~i~vdgg 229 (241)
T PRK12428 213 SD---AARWINGVNLPVDGG 229 (241)
T ss_pred Ch---hhcCccCcEEEecCc
Confidence 41 123456777777654
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=122.03 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=109.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~--~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+.+|.|+||||+.-||.+++.+|.++|. .+..+-. ..|..+. ..+.+.+...++..+++|+.|.+++.+++
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar-----~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~ 82 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGA-KLVLVAR-----RARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFV 82 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeeh-----hhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHH
Confidence 35679999999999999999999999995 4443111 1121110 11122222236999999999999888654
Q ss_pred -------cCCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 83 -------EGASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 -------~~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
.++|++||.||.. .+..+.+..+++|+.|+..+..++. +.+-.++|.+||..-+-
T Consensus 83 ~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~------- 155 (282)
T KOG1205|consen 83 EWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM------- 155 (282)
T ss_pred HHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc-------
Confidence 4689999999987 1234457789999999988877764 44556999999986541
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID 178 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~ 178 (586)
+....+.|..||.+.+.+.+.+..+.
T Consensus 156 --------~~P~~~~Y~ASK~Al~~f~etLR~El 181 (282)
T KOG1205|consen 156 --------PLPFRSIYSASKHALEGFFETLRQEL 181 (282)
T ss_pred --------CCCcccccchHHHHHHHHHHHHHHHh
Confidence 12233489999999999988776543
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-10 Score=112.35 Aligned_cols=186 Identities=16% Similarity=0.072 Sum_probs=123.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
|+++||||++.||..++++|. +| ++|.+. .|++++. ...+.+ ....+..+.+|+.|.+++.++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~--------~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLA--------ARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEE--------eCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 579999999999999999998 58 588884 3432210 000011 11247789999999988876653
Q ss_pred ------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHH----HHhCC-CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTA----CRECK-VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~llea----a~~~g-vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+.|++||+||.... ..+.....++|+.+..+++.+ ..+.+ -.++|++||...+-
T Consensus 71 ~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~-------- 142 (246)
T PRK05599 71 TQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR-------- 142 (246)
T ss_pred HHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc--------
Confidence 47999999997521 112335567788777665544 33333 35899999975431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|+..+.+.+.++. ..|+++.++.||.+..+.... ..+ ...
T Consensus 143 -------~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~-----------~~~-------~~~- 196 (246)
T PRK05599 143 -------ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG-----------MKP-------APM- 196 (246)
T ss_pred -------CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC-----------CCC-------CCC-
Confidence 112345799999998888776644 258999999999886542110 000 000
Q ss_pred cccchhHHHHHHHHHHH
Q 007866 223 DFTYVENVAHAHVCAAE 239 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale 239 (586)
....+|+|++++.+++
T Consensus 197 -~~~pe~~a~~~~~~~~ 212 (246)
T PRK05599 197 -SVYPRDVAAAVVSAIT 212 (246)
T ss_pred -CCCHHHHHHHHHHHHh
Confidence 1468999999999887
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-11 Score=105.70 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=124.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+.+|..+|.||||-.|+.+++++++.+.+ .|++ +.|.+. ...-....+.....|....+++...++|
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~--------i~RR~~----~d~at~k~v~q~~vDf~Kl~~~a~~~qg 83 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYA--------ILRREL----PDPATDKVVAQVEVDFSKLSQLATNEQG 83 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEE--------EEeccC----CCccccceeeeEEechHHHHHHHhhhcC
Confidence 45789999999999999999999999854 4777 444321 0111234677888999888999999999
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
+|+.+-+-|........+-.|++...-...++++|++.|+++|+.+||.++- ....-.|-..|
T Consensus 84 ~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd-----------------~sSrFlY~k~K 146 (238)
T KOG4039|consen 84 PDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD-----------------PSSRFLYMKMK 146 (238)
T ss_pred CceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC-----------------cccceeeeecc
Confidence 9999999887743333556677777778889999999999999999999662 23345688899
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ 197 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~ 197 (586)
-+.|+-+.+..= =.++|+|||.+.|.+...
T Consensus 147 GEvE~~v~eL~F---~~~~i~RPG~ll~~R~es 176 (238)
T KOG4039|consen 147 GEVERDVIELDF---KHIIILRPGPLLGERTES 176 (238)
T ss_pred chhhhhhhhccc---cEEEEecCcceecccccc
Confidence 999998888621 258999999999987654
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=112.62 Aligned_cols=160 Identities=9% Similarity=0.016 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||++-||+.++++|.++|+ +|.+. .|+.++. ...+.+ ...++..+.+|+.|.+++.++++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~--------~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILC--------DQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFD 74 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEE--------cCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999994 88884 3432210 000000 12356778899999988876652
Q ss_pred --------CCCEEEEcccCCC---C--C---CChhHHHHHHHHHHHHHHHHH----HhCC-CCEEEEecCccccccCCCC
Q 007866 84 --------GASTVFYVDATDL---N--T---DDFYNCYMIIVQGAKNVVTAC----RECK-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 --------~~D~Vih~aa~~~---~--~---~~~~~~~~~Nv~gt~~lleaa----~~~g-vkr~I~~SS~~vyg~~~~~ 142 (586)
++|++||+||... . + .+....+++|..++..+..++ ++.+ -.++|++||...+
T Consensus 75 ~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------ 148 (227)
T PRK08862 75 AIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------ 148 (227)
T ss_pred HHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC------
Confidence 5899999997431 1 1 233445667877776665443 3333 3589999985421
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
.+...|+.+|+..+.+.+..+. .+|+++..+.||.+-.+
T Consensus 149 ------------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ------------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 1245799999999988877654 36899999999988655
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=120.01 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=112.6
Q ss_pred EEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-----
Q 007866 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE----- 83 (586)
Q Consensus 12 lVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~----- 83 (586)
+||||++.||.+++++|.++|+++|++. .|+.++. .....+ ...++..+.+|+.|.+++.++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 72 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMA--------CRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRS 72 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEE--------eCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhc
Confidence 5999999999999999999994488884 3332210 000111 12357788999999998876653
Q ss_pred --CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCC--CCEEEEecCcccccc---C--CCC
Q 007866 84 --GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECK--VRRLVYNSTADVVFD---G--SHD 142 (586)
Q Consensus 84 --~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~g--vkr~I~~SS~~vyg~---~--~~~ 142 (586)
++|++||+||... ...+.+..+++|+.|+.++.+++ ++.+ ..|+|++||...+-. + .+.
T Consensus 73 ~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~ 152 (308)
T PLN00015 73 GRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPK 152 (308)
T ss_pred CCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCc
Confidence 4799999999741 12345688999999977776554 3343 469999999865411 0 000
Q ss_pred --CC-------CC-CCCc-----ccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCccc
Q 007866 143 --IH-------NG-DETL-----TCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (586)
Q Consensus 143 --~~-------~~-~E~~-----p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G 192 (586)
.. +. ++.. .....+...|+.||+..+.+.+.++++ .|+.++++.||.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~ 221 (308)
T PLN00015 153 ANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT 221 (308)
T ss_pred cchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence 00 00 0000 001234567999999866665555432 589999999999964
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-11 Score=112.48 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=110.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc---
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
|+++||||+|-||+.++++|+++|.++|.++.+... .+....+...+ ...++.++.+|+.+.+++.++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~-----~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSED-----SEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCH-----HHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccc-----ccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999997567888433200 01000010111 23578999999999988887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
..|++||+||... ...+.+..+++|+.+...+.+++...+-.++|++||....-
T Consensus 76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 140 (167)
T PF00106_consen 76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR--------------- 140 (167)
T ss_dssp HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS---------------
T ss_pred cccccccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc---------------
Confidence 4799999999873 13446789999999999999988886667999999987641
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcC
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANN 176 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~ 176 (586)
+......|+.+|...+.+.+.++.
T Consensus 141 ~~~~~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 141 GSPGMSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp SSTTBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 223456899999999999988754
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=108.11 Aligned_cols=195 Identities=14% Similarity=0.077 Sum_probs=137.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
-.+..||||||++-+|+.++.+++++|. .+.+.|+.... ..+........ .++..+.||+.|.+++.+..+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~---~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQG---NEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccc---hHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHH
Confidence 3578999999999999999999999995 88888876531 11111111111 368899999999988776553
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHH----HHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVV----TACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~ll----eaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
.+|++||.||.. .+++.-+.++++|+.|..... -.+.+.+-.++|-++|..-+.
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~---------- 178 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF---------- 178 (300)
T ss_pred HHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc----------
Confidence 489999999987 234556889999999876654 445555566999998886542
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhc------CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFAN------NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~------~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
......+|..||..+.-..+++. +..|++++.+-|+.+= ++.+. . .. .-..+
T Consensus 179 -----g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~----Tgmf~----~-~~--------~~~~l 236 (300)
T KOG1201|consen 179 -----GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN----TGMFD----G-AT--------PFPTL 236 (300)
T ss_pred -----CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc----ccccC----C-CC--------CCccc
Confidence 22446789999999877666553 3357888888777662 11111 1 11 11345
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
.+.+..+.+|+.++.+++
T Consensus 237 ~P~L~p~~va~~Iv~ai~ 254 (300)
T KOG1201|consen 237 APLLEPEYVAKRIVEAIL 254 (300)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 788899999999999887
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=110.96 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc---cCCCCCCCCCCCCCC--CCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ---LDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~---l~r~~~~~~~~~~l~--~~~~~~~~~Dl~d~~~l~~ 80 (586)
+.+|+++||||++.||.+++++|++.| ++|.+.++..... ..+.+......+.+. ..++..+.+|+.|.+++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 457899999999999999999999999 5888855432100 000000000001111 2346788999999988876
Q ss_pred Hhc-------CCCEEEEcc-cCC------C-----CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccc
Q 007866 81 VLE-------GASTVFYVD-ATD------L-----NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVF 137 (586)
Q Consensus 81 ~l~-------~~D~Vih~a-a~~------~-----~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg 137 (586)
+++ +.|++||+| +.. . ...+....+++|+.++..+..++.. .+-.++|++||.....
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 653 479999999 631 1 1123456678899888887766643 3335899999864321
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCccc
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFG 192 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G 192 (586)
.. . +......|+.+|...+.+.+.++.+ .|+++.++.||.+-.
T Consensus 165 ~~----------~--~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 165 NA----------T--HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRS 210 (305)
T ss_pred cC----------c--CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCcccc
Confidence 00 0 1123457999999999888766543 579999999987743
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=109.37 Aligned_cols=223 Identities=9% Similarity=-0.017 Sum_probs=136.9
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcccccCCC---CCCCCCC--CCCC----CCCeEEEEccC--
Q 007866 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS---ESNSLLP--DSLS----SGRAEYHQVDV-- 72 (586)
Q Consensus 6 ~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~---~~~~~~~--~~l~----~~~~~~~~~Dl-- 72 (586)
..+|+++|||| +.-||..+++.|.+.|. +|.+. +.... +... -...... .... ......+.+|+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILVG-TWVPA-LNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEEE-eCcch-hhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 67899999999 79999999999999995 77762 11000 0000 0000000 0001 11235677888
Q ss_pred CCH------------------HHHHHHhc-------CCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHH
Q 007866 73 RDI------------------SQIKKVLE-------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTA 118 (586)
Q Consensus 73 ~d~------------------~~l~~~l~-------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~llea 118 (586)
.+. +++.++++ ++|++||+||.. ....+++..+++|+.+..++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 222 24444432 479999999632 12346788999999999988887
Q ss_pred HHhC--CCCEEEEecCccccccCCCCCCCCCCCcccCCCC-C-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCc
Q 007866 119 CREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-Q-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNV 190 (586)
Q Consensus 119 a~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~-~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v 190 (586)
+... .-.++|++||....- ..| . ..|+.||+..+.+.+.++.+ +|+++..+-||.+
T Consensus 164 ~~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v 227 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPL 227 (303)
T ss_pred HHHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCc
Confidence 6543 115899999976531 112 2 36999999999998877642 5899999999988
Q ss_pred ccCCCCCc--HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 191 FGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 191 ~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
-.+..... .+.......... ....+...+|++.+++.++.. ......|+.+.+.++.
T Consensus 228 ~T~~~~~~~~~~~~~~~~~~~~---------pl~r~~~peevA~~~~fLaS~---~a~~itG~~l~vdGG~ 286 (303)
T PLN02730 228 GSRAAKAIGFIDDMIEYSYANA---------PLQKELTADEVGNAAAFLASP---LASAITGATIYVDNGL 286 (303)
T ss_pred cCchhhcccccHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCc---cccCccCCEEEECCCc
Confidence 65432110 111111111110 112245689999999877641 1235677888776653
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=105.15 Aligned_cols=155 Identities=22% Similarity=0.206 Sum_probs=110.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCC---CCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLP---DSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~---~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+++||||+|-||..+++.|.++|..++++ +.|+.. ..... +.+ ...++.++.+|+.|++++.++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il--------~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~ 73 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLIL--------LGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALA 73 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEE--------EESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEE--------eccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHH
Confidence 58999999999999999999999778888 455521 10000 011 23478899999999999999986
Q ss_pred C-------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 G-------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ~-------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
. ++.|||+|+... ...+.+.....-+.|+.+|.++.....++.||.+||.+....
T Consensus 74 ~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G----------- 142 (181)
T PF08659_consen 74 QLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLG----------- 142 (181)
T ss_dssp TSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-----------
T ss_pred HHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhcc-----------
Confidence 4 489999999861 233466778888999999999999999999999999986521
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCC
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~ 188 (586)
...+..|+..-...+.+.+.... .|.+++++.-+
T Consensus 143 ----~~gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg 176 (181)
T PF08659_consen 143 ----GPGQSAYAAANAFLDALARQRRS-RGLPAVSINWG 176 (181)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-
T ss_pred ----CcchHhHHHHHHHHHHHHHHHHh-CCCCEEEEEcc
Confidence 13457899999999988887655 68888887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=113.70 Aligned_cols=188 Identities=15% Similarity=0.064 Sum_probs=126.9
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
|.+....|+||.|+|++|.||+.++..|..++. ++++++|+. ...... -.+.+.. ......+..|+++..
T Consensus 1 ~~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~----~~~g~a-~Dl~~~~----~~~~v~~~td~~~~~ 71 (321)
T PTZ00325 1 MRPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV----GAPGVA-ADLSHID----TPAKVTGYADGELWE 71 (321)
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC----CCcccc-cchhhcC----cCceEEEecCCCchH
Confidence 666667889999999999999999999986553 489998872 111111 0111111 123344555655556
Q ss_pred HHhcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 80 KVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 80 ~~l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+.++|+|+||++||... +..+.......|+..++++++++++++++++|+++|.-+-....-......+.. ...|..
T Consensus 72 ~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~s--g~p~~~ 149 (321)
T PTZ00325 72 KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAG--VYDPRK 149 (321)
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhcc--CCChhh
Confidence 78999999999999863 345678899999999999999999999999999999877532211000011222 346677
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVP 200 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-~~~~ 200 (586)
.||.+-.-.-++-...++..+++...++ +.++|.... ..++
T Consensus 150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd~s~v~ 191 (321)
T PTZ00325 150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSGVTIVP 191 (321)
T ss_pred eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCCccccc
Confidence 7887644444444445566778877887 778887544 3444
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-09 Score=109.50 Aligned_cols=177 Identities=14% Similarity=0.070 Sum_probs=125.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
..+++++|||||.-||.+.++.|.++| .+|+. ..|+..++ .+.......++.++++|+.|.+++.+
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~--------~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRG-AHVVL--------ACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCC-CEEEE--------EeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHH
Confidence 456899999999999999999999999 58888 45544211 11122334578889999999988876
Q ss_pred Hhc-------CCCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
..+ ..|+.|+.||.+. ..+..+.++.+|..|...+.+. ++.....|+|++||..- +. ..+..
T Consensus 104 fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~-~~~~~ 181 (314)
T KOG1208|consen 104 FAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GG-KIDLK 181 (314)
T ss_pred HHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cC-ccchh
Confidence 654 3699999999882 2345799999999988776654 44444479999999865 11 11111
Q ss_pred CC-CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCC
Q 007866 145 NG-DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPG 194 (586)
Q Consensus 145 ~~-~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~ 194 (586)
.. .|... .......|+.||........++.++. |+.+..+.||.+-..+
T Consensus 182 ~l~~~~~~-~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 182 DLSGEKAK-LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG 233 (314)
T ss_pred hccchhcc-CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence 11 11110 02223359999999888887776653 6999999999998774
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-09 Score=95.32 Aligned_cols=217 Identities=15% Similarity=0.122 Sum_probs=147.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
+.+.++||||+.-||+++++.|.++| ++|.+.|++.. .-....+.+ -...+-..+.||+.+..++...++
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~~---~A~ata~~L---~g~~~h~aF~~DVS~a~~v~~~l~e~~ 85 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDSA---AAEATAGDL---GGYGDHSAFSCDVSKAHDVQNTLEEME 85 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcC-cEEEEeecchh---hHHHHHhhc---CCCCccceeeeccCcHHHHHHHHHHHH
Confidence 45789999999999999999999999 59988776542 110111111 122355678999999877766554
Q ss_pred ----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC----CC--CEEEEecCccccccCCCCCCCC
Q 007866 84 ----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC----KV--RRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~----gv--kr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.++++++|||.. -...+++..+.+|..|+-.+-+++.+. +- -++|.+||.- |- -
T Consensus 86 k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV--Gk--i----- 156 (256)
T KOG1200|consen 86 KSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV--GK--I----- 156 (256)
T ss_pred HhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh--cc--c-----
Confidence 379999999987 246678999999999988777766543 21 2899999873 21 0
Q ss_pred CCCcccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~----~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..-.++.|+.+|.- .....++.++ .++++.++-||.|-.|.....-+...+.+....|....|+
T Consensus 157 ------GN~GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~----- 224 (256)
T KOG1200|consen 157 ------GNFGQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGE----- 224 (256)
T ss_pred ------ccccchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCC-----
Confidence 11234456555543 1222333333 4899999999999888766666677777777665544444
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+|+|..+..+.. ....-..|..+.++++
T Consensus 225 ----~EevA~~V~fLAS---~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 225 ----AEEVANLVLFLAS---DASSYITGTTLEVTGG 253 (256)
T ss_pred ----HHHHHHHHHHHhc---cccccccceeEEEecc
Confidence 8899998875542 1134466778888775
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=102.76 Aligned_cols=226 Identities=9% Similarity=-0.001 Sum_probs=133.6
Q ss_pred CCCCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccC-CCCCCCCCC--------C------C--CC--C
Q 007866 4 DEAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLD-PSESNSLLP--------D------S--LS--S 62 (586)
Q Consensus 4 ~~~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~-r~~~~~~~~--------~------~--l~--~ 62 (586)
....+|+++||||+ .-||+++++.|.++| ++|.+.|........ +..+.+... . . +. -
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 82 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF 82 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence 34578999999995 899999999999999 688885532100000 110000000 0 0 00 0
Q ss_pred CCeEEEEccCCC--------HHHHHHHh-------cCCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHH
Q 007866 63 GRAEYHQVDVRD--------ISQIKKVL-------EGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTA 118 (586)
Q Consensus 63 ~~~~~~~~Dl~d--------~~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~llea 118 (586)
...+-+.+|+++ .+++.+++ .+.|++||+||.. ....+++..+++|+.|..++.++
T Consensus 83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a 162 (299)
T PRK06300 83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH 162 (299)
T ss_pred CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 112233333333 11233333 3589999999753 12335678889999999999887
Q ss_pred HHhC--CCCEEEEecCccccccCCCCCCCCCCCcccCCCC-C-ChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCc
Q 007866 119 CREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-Q-DLMCDLKAQAEALVLFANN----IDGLLTCALRPSNV 190 (586)
Q Consensus 119 a~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~-~~Y~~sK~~~E~~l~~~~~----~~gl~~~ilRp~~v 190 (586)
+... .-.++|.+||....- ..| . ..|+.||+..+.+.+.++. ++|+++.++.||.+
T Consensus 163 ~~p~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v 226 (299)
T PRK06300 163 FGPIMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPL 226 (299)
T ss_pred HHHHhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCc
Confidence 7653 124788888765431 112 2 3699999999888877653 24899999999988
Q ss_pred ccCCCCCc--HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 191 FGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 191 ~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
-.+..... .+..........+ ...+...+|++.++..++.. ......|+++.+.++
T Consensus 227 ~T~~~~~~~~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~---~~~~itG~~i~vdGG 284 (299)
T PRK06300 227 ASRAGKAIGFIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSP---LASAITGETLYVDHG 284 (299)
T ss_pred cChhhhcccccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCC
Confidence 65432110 1111111111110 11245689999999876641 123567888888765
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-09 Score=103.90 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=113.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCCCC----CCeEEEEccCCC-HHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSLSS----GRAEYHQVDVRD-ISQI 78 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l~~----~~~~~~~~Dl~d-~~~l 78 (586)
+.+++|+||||++-||..+++.|.++|+ +|++. .|..... ........ ..+....+|+.+ .+++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~-~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v 73 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGA-RVVVA--------ARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESV 73 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEE--------cCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHH
Confidence 3578999999999999999999999994 76663 3222110 00000011 357778899998 7776
Q ss_pred HHHhc-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCC
Q 007866 79 KKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~ 142 (586)
..+++ +.|++||+||... ...+.+..+++|+.|...+.+++...- .+++|++||.... ..
T Consensus 74 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~--- 149 (251)
T COG1028 74 EALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG--- 149 (251)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC---
Confidence 65553 3899999999742 234678899999999988887443321 1189999998653 21
Q ss_pred CCCCCCCcccCCCC-CChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcc
Q 007866 143 IHNGDETLTCCWKF-QDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVF 191 (586)
Q Consensus 143 ~~~~~E~~p~~~~p-~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~ 191 (586)
.+ ...|+.||+..+.+.+.++. .+|+.+..+-||.+-
T Consensus 150 ------------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 150 ------------PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 12 47899999999888887763 368999999999443
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=105.25 Aligned_cols=228 Identities=16% Similarity=0.078 Sum_probs=144.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh--
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-- 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l-- 82 (586)
...+|.++||||+.-||+.++++|.+.|. +|++.++..+. ................++..+.+|+.+.++..+++
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEER--LEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHH
Confidence 35689999999999999999999999995 88884443210 00000000001112356889999999876655443
Q ss_pred ------cCCCEEEEcccCCC--------CCCChhHHHHHHHHH-HHHHHHHHHhC----CCCEEEEecCccccccCCCCC
Q 007866 83 ------EGASTVFYVDATDL--------NTDDFYNCYMIIVQG-AKNVVTACREC----KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ------~~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~g-t~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~ 143 (586)
.+.|++|+.||... +...++...++|+.| ...+..++..+ +-..++++||..-+...
T Consensus 82 ~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~---- 157 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG---- 157 (270)
T ss_pred HHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC----
Confidence 24899999999862 345678899999995 66666655443 34578888888654211
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-Cc----HHHHHHHhcCCCceEEE
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QL----VPLLVNLAKPGWTKFII 215 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~-~~----~~~l~~~~~~g~~~~i~ 215 (586)
...+ ..|+.+|...+++.+..+. ++|+++.++-||.+..+... .. ...+.+.... +. .+
T Consensus 158 ---------~~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~-~~-~~- 224 (270)
T KOG0725|consen 158 ---------PGSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDS-KG-AV- 224 (270)
T ss_pred ---------CCCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcc-cc-cc-
Confidence 1122 7899999999999887754 37899999999998877511 11 1122221000 00 11
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-.+...+|++.++...... +..-..|+...+.++.
T Consensus 225 ----p~gr~g~~~eva~~~~fla~~---~asyitG~~i~vdgG~ 261 (270)
T KOG0725|consen 225 ----PLGRVGTPEEVAEAAAFLASD---DASYITGQTIIVDGGF 261 (270)
T ss_pred ----ccCCccCHHHHHHhHHhhcCc---ccccccCCEEEEeCCE
Confidence 112345588999888765430 0114566666666653
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=96.60 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=115.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+.+||||||+.-||..+++++.+.|+ +|++ ..|+.. .+.+.. ..+.+.-..||+.|.++.+++.+
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi--------~gR~e~--~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewL 72 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVII--------CGRNEE--RLAEAKAENPEIHTEVCDVADRDSRRELVEWL 72 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEE--------ecCcHH--HHHHHHhcCcchheeeecccchhhHHHHHHHH
Confidence 468999999999999999999999997 8887 566544 121111 23567788999999887766654
Q ss_pred -----CCCEEEEcccCCC------C---CCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCC
Q 007866 84 -----GASTVFYVDATDL------N---TDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -----~~D~Vih~aa~~~------~---~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
..+++|++||... . -.+..+.+++|..++.+|..+...+ .-..+|.+||.-.+-
T Consensus 73 kk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv-------- 144 (245)
T COG3967 73 KKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV-------- 144 (245)
T ss_pred HhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC--------
Confidence 3699999999871 1 1124677889999999888776544 344799999986651
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhh---cCCCCceEEEEeCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFA---NNIDGLLTCALRPSNVFG 192 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~---~~~~gl~~~ilRp~~v~G 192 (586)
|......|..+|+..-.+-.+. .+..+++++=+-|+.|=-
T Consensus 145 -------Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t 187 (245)
T COG3967 145 -------PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDT 187 (245)
T ss_pred -------cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceec
Confidence 1223345999999877664444 344578888888888754
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-08 Score=93.57 Aligned_cols=203 Identities=16% Similarity=0.069 Sum_probs=135.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC--C-CCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--L-PDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~--~-~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.++.|+||||+--||-.|+++|++...-++.+. ..|.+++.. + ......++++.++.|+++.+++.++.+
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iia-------t~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~ 74 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIA-------TARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQ 74 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEE-------ecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHH
Confidence 346799999999999999999998643355442 344444321 1 111246789999999999887776653
Q ss_pred ---------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCC-----------CEEEEec
Q 007866 84 ---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKV-----------RRLVYNS 131 (586)
Q Consensus 84 ---------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gv-----------kr~I~~S 131 (586)
|.|.+|++||... +....-.++++|+.|+..+.+++ +++.- ..+|++|
T Consensus 75 ~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinis 154 (249)
T KOG1611|consen 75 EVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINIS 154 (249)
T ss_pred HHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEee
Confidence 5699999999861 12225678999999887776543 22222 2688898
Q ss_pred CccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC
Q 007866 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP 208 (586)
Q Consensus 132 S~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~ 208 (586)
|.+.- .... ...+...|..||++.-...++.+- +.++-++.+-||.|=-..
T Consensus 155 S~~~s---------~~~~---~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDM-------------- 208 (249)
T KOG1611|consen 155 SSAGS---------IGGF---RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDM-------------- 208 (249)
T ss_pred ccccc---------cCCC---CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCC--------------
Confidence 87542 1111 335678999999998888877642 357888888888774211
Q ss_pred CCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 209 g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
.+.-.-+.+++-+.-++..+..+ .++..|.-||-
T Consensus 209 ----------gg~~a~ltveeSts~l~~~i~kL---~~~hnG~ffn~ 242 (249)
T KOG1611|consen 209 ----------GGKKAALTVEESTSKLLASINKL---KNEHNGGFFNR 242 (249)
T ss_pred ----------CCCCcccchhhhHHHHHHHHHhc---CcccCcceEcc
Confidence 11223455888888888877765 45666665554
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=99.19 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=134.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+|+||||+.-+|..++.++..+|+ .|++ ..|+..+. .+.-.-....+.+..+|+.|.+++..++
T Consensus 33 ~~hi~itggS~glgl~la~e~~~~ga-~Vti--------~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~ 103 (331)
T KOG1210|consen 33 RRHILITGGSSGLGLALALECKREGA-DVTI--------TARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVI 103 (331)
T ss_pred cceEEEecCcchhhHHHHHHHHHccC-ceEE--------EeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHH
Confidence 36899999999999999999999996 8888 56654421 1111112233778999999999988777
Q ss_pred cC-------CCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCccccccCCCCC
Q 007866 83 EG-------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~~-------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~-----gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ +|.+|+|||.. .+....+...++|..|+.|++.++... ...+++.+||.....
T Consensus 104 ~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~------ 177 (331)
T KOG1210|consen 104 EELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML------ 177 (331)
T ss_pred hhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc------
Confidence 53 69999999986 234456888999999999999877543 133888888876531
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+....+.|+.+|...-.+..... .++|+.++..-|+.+--|+-.. ....+.....+...+.
T Consensus 178 ---------~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~------En~tkP~~t~ii~g~s- 241 (331)
T KOG1210|consen 178 ---------GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFER------ENKTKPEETKIIEGGS- 241 (331)
T ss_pred ---------CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccc------ccccCchheeeecCCC-
Confidence 23445667777766554444332 2368999999999888776321 0001111112222222
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
+.+-.+++|.+++.-+.
T Consensus 242 --s~~~~e~~a~~~~~~~~ 258 (331)
T KOG1210|consen 242 --SVIKCEEMAKAIVKGMK 258 (331)
T ss_pred --CCcCHHHHHHHHHhHHh
Confidence 33779999999986655
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-10 Score=111.96 Aligned_cols=210 Identities=17% Similarity=0.097 Sum_probs=140.8
Q ss_pred cCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh--------cC
Q 007866 15 NGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--------EG 84 (586)
Q Consensus 15 Gat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l--------~~ 84 (586)
|++ +-||+.++++|+++| .+|.+.++.... . ...........+.+.+.+|+.|++++.+++ .+
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEK---L---ADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHH---H---HHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHH---H---HHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCC
Confidence 566 999999999999999 599995554320 0 000111111123457999999998887664 34
Q ss_pred CCEEEEcccCCCC-----------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 85 ASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 85 ~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
+|++||+++.... ..++...+++|+.+...+.+++... .-.++|++||.....
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~-------------- 139 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR-------------- 139 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS--------------
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc--------------
Confidence 7999999987632 1246788899999999998877543 125899999886531
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcC---C-CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANN---I-DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~---~-~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.+|...+.+.+.++. . +|+++.++.||.+-.+.... ..+.+.+...+..+ ..-+.
T Consensus 140 -~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~p---------l~r~~ 209 (241)
T PF13561_consen 140 -PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIP---------LGRLG 209 (241)
T ss_dssp -BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHST---------TSSHB
T ss_pred -cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhc---------cCCCc
Confidence 123344899999999999887643 3 68999999999887543111 12333333333222 12345
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..+|+|.++..++.- ......|+++.+.+|
T Consensus 210 ~~~evA~~v~fL~s~---~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 210 TPEEVANAVLFLASD---AASYITGQVIPVDGG 239 (241)
T ss_dssp EHHHHHHHHHHHHSG---GGTTGTSEEEEESTT
T ss_pred CHHHHHHHHHHHhCc---cccCccCCeEEECCC
Confidence 799999999977751 123578888888775
|
... |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-09 Score=96.02 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=117.7
Q ss_pred CCCeEEEEcC-CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNG-RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGa-tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..++|||||+ .|-||.+|++++.+.| +.|++ ..|+.+ .+.+.-...++.....|+.+++++.+..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~A--------taR~~e--~M~~L~~~~gl~~~kLDV~~~~~V~~v~~ev 74 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG-YLVYA--------TARRLE--PMAQLAIQFGLKPYKLDVSKPEEVVTVSGEV 74 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC-eEEEE--------Eccccc--hHhhHHHhhCCeeEEeccCChHHHHHHHHHH
Confidence 4688999975 5889999999999999 79999 555544 22222234578899999999998876653
Q ss_pred ------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
..|+++|.||.. ....+-+.++++|+-|..+..++.... ....+|++.|..+|-
T Consensus 75 r~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v---------- 144 (289)
T KOG1209|consen 75 RANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV---------- 144 (289)
T ss_pred hhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe----------
Confidence 259999999987 123346788999999988887776543 234899999999884
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVF 191 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~ 191 (586)
+....+.|..||++.-.+.+.+.- -+|++++.+-+|.|-
T Consensus 145 -----pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~ 186 (289)
T KOG1209|consen 145 -----PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVA 186 (289)
T ss_pred -----ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEeccccee
Confidence 334567899999998887776532 256666666666553
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=125.07 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=123.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc------cc--cC----------------CCCCCCCCCC----
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS------LQ--LD----------------PSESNSLLPD---- 58 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~------~~--l~----------------r~~~~~~~~~---- 58 (586)
.++++|||||+|-||..++++|.+++..+|.++++... +. .. +.+.......
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 46799999999999999999999984358888665410 00 00 0000000000
Q ss_pred ------------CC--CCCCeEEEEccCCCHHHHHHHhc------CCCEEEEcccCCC-------CCCChhHHHHHHHHH
Q 007866 59 ------------SL--SSGRAEYHQVDVRDISQIKKVLE------GASTVFYVDATDL-------NTDDFYNCYMIIVQG 111 (586)
Q Consensus 59 ------------~l--~~~~~~~~~~Dl~d~~~l~~~l~------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g 111 (586)
.+ ....+.++.+|++|.+++.++++ ++|.|||+||... ...+++..+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00 12357889999999998887774 4799999999751 234678899999999
Q ss_pred HHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCc
Q 007866 112 AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNV 190 (586)
Q Consensus 112 t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~-gl~~~ilRp~~v 190 (586)
+.++++++.....+++|++||...+.. ......|+.+|...+.+.+.++.+. ++++.++.||.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G---------------~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~w 2220 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYG---------------NTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPW 2220 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCC---------------CCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCee
Confidence 999999998877789999999876421 1235679999999888877766543 578888888876
Q ss_pred ccC
Q 007866 191 FGP 193 (586)
Q Consensus 191 ~G~ 193 (586)
-|+
T Consensus 2221 dtg 2223 (2582)
T TIGR02813 2221 DGG 2223 (2582)
T ss_pred cCC
Confidence 543
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=98.56 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=119.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
..+-|+|||+-.-.|+.++.+|.++| ++|.+-.... ... ..+.....+++...++.|+++++++.++.+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~------~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~ 99 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTE------EGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVK 99 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecC------chH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHH
Confidence 45779999999999999999999999 5888743221 111 112122226788889999999999988764
Q ss_pred ------CCCEEEEcccCC--------CCCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
|--.|||+||.. ...+++....++|..|+.++..+.... --.|+|++||.+- ..
T Consensus 100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G----R~----- 170 (322)
T KOG1610|consen 100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG----RV----- 170 (322)
T ss_pred HhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc----Cc-----
Confidence 347999999955 124467889999999998887766432 2349999999842 11
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
+.....+|..||+..|........ .+|+++.++-|| +|-.
T Consensus 171 ------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 171 ------ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred ------cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 234567899999999998776643 379999999999 5533
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.1e-09 Score=105.12 Aligned_cols=176 Identities=14% Similarity=0.021 Sum_probs=122.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
...||+|||++|.+|+.++..|...+. .+++++|+.. .....-.+.+. .......|+.+.+++.+++.++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~a~Dl~~~----~~~~~i~~~~~~~d~~~~l~~a 87 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGVAADVSHI----NTPAQVRGFLGDDQLGDALKGA 87 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCeeEchhhhC----CcCceEEEEeCCCCHHHHcCCC
Confidence 357999999999999999999997654 3799988753 11100011111 1111233433344467889999
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|+|||+||... +..+.....+.|+..++++.+.+++++.+++|+++|--+-+...--........ ...|...||.++
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s--~~p~~~viG~~~ 165 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAG--VYDPKKLFGVTT 165 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcC--CCCcceEEEEec
Confidence 99999999863 355678999999999999999999999999999998744210000000001111 456788899999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCC
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPG 194 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~ 194 (586)
.-.+++-..++++.|++...++ +.++|..
T Consensus 166 LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 166 LDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred chHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 9999998888888899888885 5566654
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=94.44 Aligned_cols=217 Identities=15% Similarity=0.058 Sum_probs=138.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
.+|++++|||.|-||..+..+|+++|...+.+.|+-. ..+....+.....+..+-++++|+.+..+++++++.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E-----n~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE-----NPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh-----CHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 5899999999999999999999999964445522211 111122344555667899999999999888888763
Q ss_pred -----CCEEEEcccCCCCCCChhHHHHHHHHHHHH----HHHHHHhC--CC-CEEEEecCccccccCCCCCCCCCCCccc
Q 007866 85 -----ASTVFYVDATDLNTDDFYNCYMIIVQGAKN----VVTACREC--KV-RRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 85 -----~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~----lleaa~~~--gv-kr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
.|++||-||.. .+.|.+.++.+|..|..| .+....+. |- .-+|..||. +|-.
T Consensus 79 ~~fg~iDIlINgAGi~-~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv--~GL~------------- 142 (261)
T KOG4169|consen 79 ATFGTIDILINGAGIL-DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV--AGLD------------- 142 (261)
T ss_pred HHhCceEEEEcccccc-cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc--cccC-------------
Confidence 69999999997 477899999999876554 44444332 22 247888876 3321
Q ss_pred CCCCCChHHHHHHHHHHHHHh-----hcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcC-CCceEEEcCC----Cccc
Q 007866 153 CWKFQDLMCDLKAQAEALVLF-----ANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP-GWTKFIIGSG----ENMS 222 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~-----~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~-g~~~~i~g~g----~~~~ 222 (586)
|..-...|+.||+..=..-++ +..+.|++...+-||.+-- .+...+.. +... -.++. -...
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t--------~l~~~~~~~~~~~-e~~~~~~~~l~~~ 213 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRT--------DLAENIDASGGYL-EYSDSIKEALERA 213 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchH--------HHHHHHHhcCCcc-cccHHHHHHHHHc
Confidence 223345799999875444333 2334788888887775521 11111211 1110 00000 0001
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+--...+++.-++.++|. ...|.+|-++.+.
T Consensus 214 ~~q~~~~~a~~~v~aiE~------~~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 214 PKQSPACCAINIVNAIEY------PKNGAIWKVDSGS 244 (261)
T ss_pred ccCCHHHHHHHHHHHHhh------ccCCcEEEEecCc
Confidence 123467889999999983 4567788888764
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-08 Score=87.35 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=141.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++.|++||+.--||+.++..|.+.|. +|++ ..|.+. .+.+.. ....++.+.+|+.+-+.+.+++..
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViA--------vaR~~a--~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~ 74 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIA--------VARNEA--NLLSLVKETPSLIIPIVGDLSAWEALFKLLVP 74 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCC-EEEE--------EecCHH--HHHHHHhhCCcceeeeEecccHHHHHHHhhcc
Confidence 578999999999999999999999995 9999 566554 121111 123488999999998888888864
Q ss_pred ---CCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh----CCC-CEEEEecCccccccCCCCCCCCCCC
Q 007866 85 ---ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKV-RRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 85 ---~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~----~gv-kr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
.|..++.||.. -.+.+++.++++|+.+..++.+...+ .++ ..++.+||.+..-
T Consensus 75 v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R------------ 142 (245)
T KOG1207|consen 75 VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR------------ 142 (245)
T ss_pred cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc------------
Confidence 59999999976 12456777889999988887776332 233 3699999986531
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
+....+.|..+|++.+.+-+..+-+ +++++..+.|..+.-...+..+ -+-.++++.+ +.-+.--|.-
T Consensus 143 ---~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnW---SDP~K~k~mL----~riPl~rFaE 212 (245)
T KOG1207|consen 143 ---PLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNW---SDPDKKKKML----DRIPLKRFAE 212 (245)
T ss_pred ---ccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccccc---CCchhccchh----hhCchhhhhH
Confidence 3345678999999988877666543 4588888888888754221111 0111111111 1222344667
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
++.++.|+...+. .+.....|....+-+
T Consensus 213 V~eVVnA~lfLLS---d~ssmttGstlpveG 240 (245)
T KOG1207|consen 213 VDEVVNAVLFLLS---DNSSMTTGSTLPVEG 240 (245)
T ss_pred HHHHHhhheeeee---cCcCcccCceeeecC
Confidence 8888888775543 112334455554444
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=88.42 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=72.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
|+++||||||++|. +++.|.++| ++|++.+ |++++. .+...+ ...++..+.+|+.|.+++.+++++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~--------R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l 70 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIA--------RREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI 70 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEE--------CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999998876 999999999 5998844 332210 000001 124678889999999998877753
Q ss_pred -----CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC----EEEEecCc
Q 007866 85 -----ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR----RLVYNSTA 133 (586)
Q Consensus 85 -----~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk----r~I~~SS~ 133 (586)
.|.+|+.. ++.++.++.++|++.|++ ||+|+=.+
T Consensus 71 ~~~g~id~lv~~v---------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 71 EKNGPFDLAVAWI---------------HSSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred HHcCCCeEEEEec---------------cccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 46666543 445688999999999999 89977543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-07 Score=95.36 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
||+|+|.|+ |+||+.++..|.++|..+|++ .+|+.+++.........+++....|+.|.+++.+++++.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~i--------AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTI--------ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEE--------EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCE
Confidence 589999988 999999999999999679999 45554422111112234799999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
|||++.+.. ..+++++|.++|+ +++
T Consensus 72 VIn~~p~~~---------------~~~i~ka~i~~gv-~yv 96 (389)
T COG1748 72 VINAAPPFV---------------DLTILKACIKTGV-DYV 96 (389)
T ss_pred EEEeCCchh---------------hHHHHHHHHHhCC-CEE
Confidence 999997631 2368999999998 344
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=89.11 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+|+||||+|++|++++..|+..+. ++++++|+... +....+...+. .. -......|+....++.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~----~~~~~g~~~Dl-~d-~~~~~~~~~~~~~~~~~~ 75 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA----LKALEGVVMEL-QD-CAFPLLKSVVATTDPEEA 75 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc----cccccceeeeh-hh-ccccccCCceecCCHHHH
Confidence 46899999999999999999998552 38999777431 00000000000 00 000122355445566788
Q ss_pred hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEecC
Q 007866 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNST 132 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~SS 132 (586)
++++|+|||+||... ...+....++.|+.-.+.+.+...++. -+ .+|.+|.
T Consensus 76 l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 76 FKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred hCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999999999999873 345568899999999999998888873 23 4666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.6e-06 Score=80.21 Aligned_cols=163 Identities=10% Similarity=0.041 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+.+.|||||++--||..++..+.+.+...++.. ..|.... +.+.... .....+..+|+.+...+.+..+
T Consensus 4 ~~r~villTGaSrgiG~~~v~~i~aed~e~~r~g-------~~r~~a~~~~L~v~~-gd~~v~~~g~~~e~~~l~al~e~ 75 (253)
T KOG1204|consen 4 NMRKVILLTGASRGIGTGSVATILAEDDEALRYG-------VARLLAELEGLKVAY-GDDFVHVVGDITEEQLLGALREA 75 (253)
T ss_pred ccceEEEEecCCCCccHHHHHHHHhcchHHHHHh-------hhcccccccceEEEe-cCCcceechHHHHHHHHHHHHhh
Confidence 3457899999999999999999998875333331 1121110 0010011 1233445566666554444432
Q ss_pred ------CCCEEEEcccCC----------CCCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCC
Q 007866 84 ------GASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~ 142 (586)
+-|.|||.||.. .+...++.+++.|..+...+...+... . .+-+|++||.+..-
T Consensus 76 ~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~----- 150 (253)
T KOG1204|consen 76 PRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR----- 150 (253)
T ss_pred hhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc-----
Confidence 259999999976 234457899999999988887755443 2 35789999987751
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcc
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVF 191 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~ 191 (586)
|...-..|+.+|++-+.+.+..+.+. ++.+..++||.+=
T Consensus 151 ----------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvD 191 (253)
T KOG1204|consen 151 ----------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVD 191 (253)
T ss_pred ----------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCccc
Confidence 33455689999999999999886553 7888999998774
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=88.27 Aligned_cols=191 Identities=11% Similarity=0.028 Sum_probs=126.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCC-C-CCCeEEEEccCCCHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l-~-~~~~~~~~~Dl~d~~~l~ 79 (586)
++||.|+|++|.+|+.++..|...|.. ++.++|+........... -.+.+.. . ..++... . .| .
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a-~Dl~~~~~~~~~~~~i~-~--~~----~ 73 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA-MELEDCAFPLLAEIVIT-D--DP----N 73 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee-hhhhhccccccCceEEe-c--Cc----H
Confidence 479999999999999999999987743 689988754210111110 0111111 0 0122221 1 12 4
Q ss_pred HHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCC-C-EEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 80 KVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-R-RLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 80 ~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gv-k-r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
+.++++|+||.+||.. .+..+.....+.|+.-.+.+.+...+++- . .+|.+|-..-. -....-...+ ...+
T Consensus 74 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-----~t~~~~k~sg-~~p~ 147 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT-----NALIAMKNAP-DIPP 147 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH-----HHHHHHHHcC-CCCh
Confidence 6788999999999986 34446678899999999999999988763 3 56666532200 0000001110 1456
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~ 212 (586)
...||.++...+++-..+++..|++...+|..+|||+.....++.+......|+++
T Consensus 148 ~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl 203 (322)
T cd01338 148 DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPA 203 (322)
T ss_pred HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeH
Confidence 77899999999999999999899999999998999997656666566655566543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-06 Score=78.04 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh----
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l---- 82 (586)
.++.++||||+|.||..+++.|.++| ++|.+.|+.... .. .....+. -.......+.+|+.|.+++.+++
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~-~~--~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~v~~~~ 88 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQES-GQ--ATVEEIT--NLGGEALFVSYDMEKQGDWQRVISITL 88 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHH-HH--HHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599886543210 00 0000000 01234667899999988877654
Q ss_pred ---cCCCEEEEcccCCC----CCC-ChhHHHHHHHHH----HHHHHHHHHhC-------CCCEEEEecCccc
Q 007866 83 ---EGASTVFYVDATDL----NTD-DFYNCYMIIVQG----AKNVVTACREC-------KVRRLVYNSTADV 135 (586)
Q Consensus 83 ---~~~D~Vih~aa~~~----~~~-~~~~~~~~Nv~g----t~~lleaa~~~-------gvkr~I~~SS~~v 135 (586)
.++|++||+||... .+. ........|+.+ ++.+.....+. +..||-.+||.++
T Consensus 89 ~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 89 NAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred HHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 25899999999751 111 111222333333 33333333332 3457888888765
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-06 Score=78.63 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=133.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+-..+||||..-+|+..++.|.+.|. .|..+|+-.+ .... ..+. -..++.+..+|++.++++..++.
T Consensus 9 glvalvtggasglg~ataerlakqga-sv~lldlp~s---kg~~----vake-lg~~~vf~padvtsekdv~aala~ak~ 79 (260)
T KOG1199|consen 9 GLVALVTGGASGLGKATAERLAKQGA-SVALLDLPQS---KGAD----VAKE-LGGKVVFTPADVTSEKDVRAALAKAKA 79 (260)
T ss_pred CeeEEeecCcccccHHHHHHHHhcCc-eEEEEeCCcc---cchH----HHHH-hCCceEEeccccCcHHHHHHHHHHHHh
Confidence 45689999999999999999999995 9999887542 1111 1111 23578899999999988888775
Q ss_pred ---CCCEEEEcccCC-------------CCCCChhHHHHHHHHHHHHHHHHHHh-C-------CCCE--EEEecCccccc
Q 007866 84 ---GASTVFYVDATD-------------LNTDDFYNCYMIIVQGAKNVVTACRE-C-------KVRR--LVYNSTADVVF 137 (586)
Q Consensus 84 ---~~D~Vih~aa~~-------------~~~~~~~~~~~~Nv~gt~~lleaa~~-~-------gvkr--~I~~SS~~vyg 137 (586)
..|+.++|||.. ..-.+++..+++|+.||-|+++.... . +=.| +|.+-|...+.
T Consensus 80 kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd 159 (260)
T KOG1199|consen 80 KFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD 159 (260)
T ss_pred hccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec
Confidence 269999999975 11235678889999999999875431 1 1123 44444444431
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH----HHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhc---CCC
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL----VLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGW 210 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~----l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~---~g~ 210 (586)
..-.+..|+.||...--+ .+.++. .|++++.+-|+..=-| ++..+....+ ...
T Consensus 160 ---------------gq~gqaaysaskgaivgmtlpiardla~-~gir~~tiapglf~tp----llsslpekv~~fla~~ 219 (260)
T KOG1199|consen 160 ---------------GQTGQAAYSASKGAIVGMTLPIARDLAG-DGIRFNTIAPGLFDTP----LLSSLPEKVKSFLAQL 219 (260)
T ss_pred ---------------CccchhhhhcccCceEeeechhhhhccc-CceEEEeecccccCCh----hhhhhhHHHHHHHHHh
Confidence 113456788888764333 445554 5899888888755333 2222222221 111
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
++.+. -.-|..+.++.+...+| +|-.+|++.-+.+
T Consensus 220 -ipfps------rlg~p~eyahlvqaiie-----np~lngevir~dg 254 (260)
T KOG1199|consen 220 -IPFPS------RLGHPHEYAHLVQAIIE-----NPYLNGEVIRFDG 254 (260)
T ss_pred -CCCch------hcCChHHHHHHHHHHHh-----CcccCCeEEEecc
Confidence 22222 13345667777777777 6788888877755
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-06 Score=82.41 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=54.9
Q ss_pred CCCeEEEEcCC----------------CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGR----------------GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGat----------------G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~ 70 (586)
.+|+||||+|. ||+|++++++|+++|+ +|+++|... ...+. ..........+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-~V~li~g~~----~~~~~-----~~~~~~~~~~V~s 71 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-HVIYLHGYF----AEKPN-----DINNQLELHPFEG 71 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-eEEEEeCCC----cCCCc-----ccCCceeEEEEec
Confidence 47899999886 9999999999999994 898865321 00111 0001123445666
Q ss_pred cCCCHHHHHHHhc--CCCEEEEcccCC
Q 007866 71 DVRDISQIKKVLE--GASTVFYVDATD 95 (586)
Q Consensus 71 Dl~d~~~l~~~l~--~~D~Vih~aa~~ 95 (586)
|....+.+.++++ ++|+|||+||..
T Consensus 72 ~~d~~~~l~~~~~~~~~D~VIH~AAvs 98 (229)
T PRK09620 72 IIDLQDKMKSIITHEKVDAVIMAAAGS 98 (229)
T ss_pred HHHHHHHHHHHhcccCCCEEEECcccc
Confidence 4444567888884 689999999996
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=82.02 Aligned_cols=162 Identities=11% Similarity=0.089 Sum_probs=107.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----CCCCCCCCCCCeEEEEccCCCHHH----
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----SLLPDSLSSGRAEYHQVDVRDISQ---- 77 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-----~~~~~~l~~~~~~~~~~Dl~d~~~---- 77 (586)
.+...+|||||.-||++.+++|.++| .+|++ ..|+.++ .++.+. .+-.+..+..|..+.+.
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG-~nvvL--------IsRt~~KL~~v~kEI~~~-~~vev~~i~~Dft~~~~~ye~ 117 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRG-FNVVL--------ISRTQEKLEAVAKEIEEK-YKVEVRIIAIDFTKGDEVYEK 117 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcC-CEEEE--------EeCCHHHHHHHHHHHHHH-hCcEEEEEEEecCCCchhHHH
Confidence 35789999999999999999999999 69999 6776552 011111 11357788899886554
Q ss_pred HHHHhcC--CCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCC
Q 007866 78 IKKVLEG--ASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 78 l~~~l~~--~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+.+.+.+ +.++||++|...+ ....+..+.+|+.++..+.+ -+.+.+-.-+|++||.+-.-
T Consensus 118 i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~----- 192 (312)
T KOG1014|consen 118 LLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLI----- 192 (312)
T ss_pred HHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccc-----
Confidence 5666665 5689999998731 11234556667766544444 33344455689999875320
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
+..-.+.|+.||...+..-..... .+|+.+-.+-|..|-++
T Consensus 193 ----------p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 193 ----------PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred ----------cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 233457899999976655443332 25888888877777654
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=77.93 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=70.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+|||+||||. |+.+++.|.++| ++|.+ ..+++... ..+...+...+..+..|.+++.+.++ ++|
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~--------s~~t~~~~---~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~ 67 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILV--------TVTTSEGK---HLYPIHQALTVHTGALDPQELREFLKRHSID 67 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEE--------EEccCCcc---ccccccCCceEEECCCCHHHHHHHHHhcCCC
Confidence 68999999999 999999999999 48888 55555422 11222234456677778888888885 499
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
+|||.+.+. . ...+.|+.++|++.|++-+=
T Consensus 68 ~VIDAtHPf------A------~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 68 ILVDATHPF------A------AQITTNATAVCKELGIPYVR 97 (256)
T ss_pred EEEEcCCHH------H------HHHHHHHHHHHHHhCCcEEE
Confidence 999987553 1 24478899999999986333
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=79.92 Aligned_cols=118 Identities=19% Similarity=0.080 Sum_probs=80.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-cCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLE-LGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~-~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|||+|.||+|.+|++++..|.. .+. ++++++|+... +... ..+.........+.+ .+.+++.+.++++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~----~~g~---alDl~~~~~~~~i~~--~~~~d~~~~l~~~D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV----TPGV---AVDLSHIPTAVKIKG--FSGEDPTPALEGAD 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC----Ccce---ehhhhcCCCCceEEE--eCCCCHHHHcCCCC
Confidence 6899999999999999988854 221 47888665421 1000 001001011122333 11233456778999
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
+||.++|.. .+..+.......|....+++++++++++.+++|.+.|-=+
T Consensus 72 iVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 72 VVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 999999986 3344678889999999999999999999999988887533
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=76.55 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC--HHHHHHHhcCCCEEEEcc
Q 007866 15 NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVLEGASTVFYVD 92 (586)
Q Consensus 15 GatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d--~~~l~~~l~~~D~Vih~a 92 (586)
.+||++|++++++|+++| ++|++++ |..... .....+++++.++-.+ .+.+.+.++++|+|||+|
T Consensus 23 ~SSG~iG~aLA~~L~~~G-~~V~li~--------r~~~~~----~~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~A 89 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAG-HEVTLVT--------TKTAVK----PEPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSM 89 (229)
T ss_pred ccchHHHHHHHHHHHhCC-CEEEEEE--------Cccccc----CCCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCC
Confidence 458999999999999999 5999844 221110 0012356666654322 345666777899999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHh
Q 007866 93 ATDLNTDDFYNCYMIIVQGAKNVVTACRE 121 (586)
Q Consensus 93 a~~~~~~~~~~~~~~Nv~gt~~lleaa~~ 121 (586)
|.... ......-..+...+.++.+.+++
T Consensus 90 Avsd~-~~~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 90 AVSDY-TPVYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ccCCc-eehhhhhhhhhhhhhhhhhhhcc
Confidence 98631 11122223344445556666653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.7e-06 Score=86.42 Aligned_cols=95 Identities=29% Similarity=0.353 Sum_probs=66.8
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (586)
|+|.|| |++|+.+++.|.+++.. +|.+.|+.... . ..+...+...+++.+.+|+.|.+++.++++++|+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~----~---~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEK----A---ERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHH----H---HHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHH----H---HHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEE
Confidence 789999 99999999999999855 78886654321 0 001111134689999999999999999999999999
Q ss_pred EcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
||+++. . ...++++|.++|+ ++|=
T Consensus 73 n~~gp~---~------------~~~v~~~~i~~g~-~yvD 96 (386)
T PF03435_consen 73 NCAGPF---F------------GEPVARACIEAGV-HYVD 96 (386)
T ss_dssp E-SSGG---G------------HHHHHHHHHHHT--EEEE
T ss_pred ECCccc---h------------hHHHHHHHHHhCC-Ceec
Confidence 999874 1 2358889999987 5665
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=1e-05 Score=61.44 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.8
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
....|.+||+++|||+|+++++++|+++.+|++++..+
T Consensus 24 ~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 24 HLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp EE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTTT
T ss_pred hhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 45679999999999999999999999999999987654
|
... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=75.72 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=74.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH--------
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-------- 75 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-------- 75 (586)
||.||||+|.+|+.++..|...|.. +++++|+... ... .+-...|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~--~~~---------------~~g~~~Dl~d~~~~~~~~~ 64 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA--MKA---------------LEGVVMELQDCAFPLLKGV 64 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc--cCc---------------cceeeeehhhhcccccCCc
Confidence 7999999999999999999976532 5889777541 000 11111222221
Q ss_pred ---HHHHHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEec
Q 007866 76 ---SQIKKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNS 131 (586)
Q Consensus 76 ---~~l~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~S 131 (586)
....+.++++|+|||+||.. .+..+.....+.|+.-.+.+....++++ -. .+|.+|
T Consensus 65 ~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 65 VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 23467889999999999987 3445678889999999999999998883 44 455555
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=73.58 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=74.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH-------
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS------- 76 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~------- 76 (586)
+|.|+|++|.+|++++..|...|.. +++++|+...... .+-...|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~-----------------a~g~~~Dl~d~~~~~~~~~ 63 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKV-----------------LEGVVMELMDCAFPLLDGV 63 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccc-----------------cceeEeehhcccchhcCce
Confidence 5899999999999999999986543 5889776432100 111122222211
Q ss_pred ----HHHHHhcCCCEEEEcccCCCC-CCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEecC
Q 007866 77 ----QIKKVLEGASTVFYVDATDLN-TDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNST 132 (586)
Q Consensus 77 ----~l~~~l~~~D~Vih~aa~~~~-~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~SS 132 (586)
...+.++++|+|||+||.... ..+.....+.|+.-.+.+.+...+++ -+ .+|.+|-
T Consensus 64 ~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 64 VPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred eccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 235678999999999998733 34478899999999999999999884 43 5555553
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00012 Score=70.04 Aligned_cols=175 Identities=15% Similarity=0.099 Sum_probs=108.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-----CCCCCC--CCCeEEEEccCCCHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-----LPDSLS--SGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-----~~~~l~--~~~~~~~~~Dl~d~~~l~ 79 (586)
+.|.++|||++..+|-.++.+|++..+.+|+..-.- ..|+-++.+ +..... ..+++++.+|+.+..++.
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~l----tcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~ 77 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCL----TCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVF 77 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEE----EeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHH
Confidence 446799999999999999999999764322211000 233322110 111111 346889999999976665
Q ss_pred HHh-------cCCCEEEEcccCCCC----------------------------------CCChhHHHHHHHHHHHHHHHH
Q 007866 80 KVL-------EGASTVFYVDATDLN----------------------------------TDDFYNCYMIIVQGAKNVVTA 118 (586)
Q Consensus 80 ~~l-------~~~D~Vih~aa~~~~----------------------------------~~~~~~~~~~Nv~gt~~llea 118 (586)
++- +..|.|+-.||.... .++-.++++.||-|.-.+++.
T Consensus 78 ~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~ 157 (341)
T KOG1478|consen 78 RASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRE 157 (341)
T ss_pred HHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhh
Confidence 544 457999999987611 223477889999998877765
Q ss_pred HHhC----CCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc
Q 007866 119 CREC----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF 191 (586)
Q Consensus 119 a~~~----gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~ 191 (586)
.... .-.++|.+||..+= .. ..+=++-.......+|..||...+.+-.+..++ .|+.--++.||...
T Consensus 158 l~pll~~~~~~~lvwtSS~~a~----kk--~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~t 231 (341)
T KOG1478|consen 158 LEPLLCHSDNPQLVWTSSRMAR----KK--NLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFT 231 (341)
T ss_pred hhhHhhcCCCCeEEEEeecccc----cc--cCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceee
Confidence 5432 23489999998651 11 111111113456678999999998876665543 24544555555443
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=73.73 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH-HhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~-~l~~~ 85 (586)
++|+|.|.||||++|..+++.|.++.+.++..+ .+..+.+.. +..........|..+.+.++. .++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l--------~s~~saG~~---i~~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVM--------TADRKAGQS---FGSVFPHLITQDLPNLVAVKDADFSDV 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEE--------EChhhcCCC---chhhCccccCccccceecCCHHHhcCC
Confidence 457999999999999999999999966688884 332222111 000111122234333322222 25889
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
|+||-+.+.. .+.+++.++ +.| .++|-.||..-+
T Consensus 106 DvVf~Alp~~---------------~s~~i~~~~-~~g-~~VIDlSs~fRl 139 (381)
T PLN02968 106 DAVFCCLPHG---------------TTQEIIKAL-PKD-LKIVDLSADFRL 139 (381)
T ss_pred CEEEEcCCHH---------------HHHHHHHHH-hCC-CEEEEcCchhcc
Confidence 9999866431 355666665 356 489999998765
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0028 Score=60.21 Aligned_cols=214 Identities=16% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|++||+|-.- .|+..+++.|.++|. ++...-..+. +..+.. .+.+.+ ...-.+.||+.+.++++++|+
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~fTy~~e~--l~krv~--~la~~~--~s~~v~~cDV~~d~~i~~~f~ 76 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAFTYQGER--LEKRVE--ELAEEL--GSDLVLPCDVTNDESIDALFA 76 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCC-EEEEEeccHH--HHHHHH--HHHhhc--cCCeEEecCCCCHHHHHHHHH
Confidence 4689999999655 699999999999995 6555211110 110000 111111 124568999999988888775
Q ss_pred -------CCCEEEEcccCCCC-----------CCChhHHHHHHHHHHHHHHHHHHhC---C--CCEEEEecCccccccCC
Q 007866 84 -------GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC---K--VRRLVYNSTADVVFDGS 140 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~lleaa~~~---g--vkr~I~~SS~~vyg~~~ 140 (586)
+.|.++|+.|..+. ..++....++-.-+...++++++.. | +-.+-|..|..+.
T Consensus 77 ~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~v---- 152 (259)
T COG0623 77 TIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVV---- 152 (259)
T ss_pred HHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeec----
Confidence 47999999998721 1123333344444444455555432 1 1122233333221
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCc
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWT 211 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~ 211 (586)
+..+..|..|+..|.-++..+.. .|+++-.+-- ||-.+ ..+..++......-
T Consensus 153 --------------PnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISA----GPIrTLAasgI~~f~~~l~~~e~~a- 213 (259)
T COG0623 153 --------------PNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISA----GPIRTLAASGIGDFRKMLKENEANA- 213 (259)
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecc----cchHHHHhhccccHHHHHHHHHhhC-
Confidence 23458899999999988877643 3555544432 33211 11233333322222
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+.+.-+..+|++.....++--+ .....|++.++.+|-+
T Consensus 214 --------Pl~r~vt~eeVG~tA~fLlSdL---ssgiTGei~yVD~G~~ 251 (259)
T COG0623 214 --------PLRRNVTIEEVGNTAAFLLSDL---SSGITGEIIYVDSGYH 251 (259)
T ss_pred --------CccCCCCHHHhhhhHHHHhcch---hcccccceEEEcCCce
Confidence 2233455888888766555433 3578899999987654
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0015 Score=67.89 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCCCchHHH--HHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCCC--CCCeEEEEccCCCHH
Q 007866 6 AIPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSLS--SGRAEYHQVDVRDIS 76 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~--lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l~--~~~~~~~~~Dl~d~~ 76 (586)
..+|++|||||++-+|.+ ++++| +.| ..|.+++......-.+..+.+ ....... ...+..+.+|+.+.+
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 346899999999999999 89999 999 477775432110000000000 0111111 123567899999988
Q ss_pred HHHHHhc-------CCCEEEEcccCC
Q 007866 77 QIKKVLE-------GASTVFYVDATD 95 (586)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~ 95 (586)
++.++++ ++|++||.+|..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 8776653 489999999986
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=72.67 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=54.9
Q ss_pred CCCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEE
Q 007866 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (586)
Q Consensus 6 ~~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~ 69 (586)
+.+++|+|||| +|.+|.+++++|.++|. +|++++ +..+. . ...+ ...
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~--------~~~~~---~---~~~~--~~~ 248 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVS--------GPVNL---P---TPAG--VKR 248 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeC--------CCccc---c---CCCC--cEE
Confidence 46799999999 99999999999999995 998844 32210 0 0112 346
Q ss_pred ccCCCHHHHHHHh----cCCCEEEEcccCC
Q 007866 70 VDVRDISQIKKVL----EGASTVFYVDATD 95 (586)
Q Consensus 70 ~Dl~d~~~l~~~l----~~~D~Vih~aa~~ 95 (586)
+|+.+.+++.+.+ .++|++||+||..
T Consensus 249 ~dv~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 249 IDVESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred EccCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 7999987777665 3589999999986
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00014 Score=74.61 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+||||+|+||+.++++|.++ |...++++ .|+..+. . .+. .++..+|+. .+.+++.+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--------~R~~~rl--~-~La---~el~~~~i~---~l~~~l~~ 215 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--------ARQQERL--Q-ELQ---AELGGGKIL---SLEEALPE 215 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--------cCCHHHH--H-HHH---HHhccccHH---hHHHHHcc
Confidence 35689999999999999999999865 54578883 4432211 0 000 011123433 45678899
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+|||+++..
T Consensus 216 aDiVv~~ts~~ 226 (340)
T PRK14982 216 ADIVVWVASMP 226 (340)
T ss_pred CCEEEECCcCC
Confidence 99999999875
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00039 Score=66.29 Aligned_cols=80 Identities=26% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++|+||+|.+|+.+++.|.+.|+ +|+++ .|+.++. .+...+. ..+.+...+|..+.+++.+.+.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~--------~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLV--------GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEE--------cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 3568999999999999999999999994 89984 4432210 0000011 1234566778889999999999
Q ss_pred CCCEEEEcccC
Q 007866 84 GASTVFYVDAT 94 (586)
Q Consensus 84 ~~D~Vih~aa~ 94 (586)
++|+||++.+.
T Consensus 97 ~~diVi~at~~ 107 (194)
T cd01078 97 GADVVFAAGAA 107 (194)
T ss_pred cCCEEEECCCC
Confidence 99999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00046 Score=69.36 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=66.7
Q ss_pred eEEEEcCCCchHHHHHHHHHh----cCCcEEEEecCCcccccCCCCCCCCCCCCC---------CCCCeEEEEccCCCHH
Q 007866 10 TCVVLNGRGFVGRSLVLRLLE----LGKCIVRVTDSTQSLQLDPSESNSLLPDSL---------SSGRAEYHQVDVRDIS 76 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~----~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l---------~~~~~~~~~~Dl~d~~ 76 (586)
-++|.|||||.|.++++++.+ .| ..+-+ ..|++.+ +.+.+ .-....++.+|..|++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slav--------AGRn~~K--L~~vL~~~~~k~~~~ls~~~i~i~D~~n~~ 75 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAV--------AGRNEKK--LQEVLEKVGEKTGTDLSSSVILIADSANEA 75 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEE--------ecCCHHH--HHHHHHHHhhccCCCcccceEEEecCCCHH
Confidence 578999999999999999998 45 35555 3454331 11000 0022338899999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 007866 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (586)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gv 124 (586)
++.+..+.+.+|+||+|+...-.+ +++.+|.+.|.
T Consensus 76 Sl~emak~~~vivN~vGPyR~hGE-------------~VVkacienG~ 110 (423)
T KOG2733|consen 76 SLDEMAKQARVIVNCVGPYRFHGE-------------PVVKACIENGT 110 (423)
T ss_pred HHHHHHhhhEEEEeccccceecCc-------------HHHHHHHHcCC
Confidence 999999999999999999733332 38899999986
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0062 Score=62.42 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=75.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCC--CeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSG--RAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~--~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|++|++|..++..|...|+. +|+++|+........... -.+.+.+... ..++... .|. +.+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~-~dl~d~~~~~~~~~~i~~~--~d~----~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLR-LDIYDALAAAGIDAEIKIS--SDL----SDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccccccccc-chhhhchhccCCCcEEEEC--CCH----HHhCCC
Confidence 68999999999999999999999863 589977743100111000 0111111111 1111111 122 348899
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
|+||-+++... ...+.....+.|..-.+.+++...+.+-+ .+|.+|+..
T Consensus 74 DiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 74 DIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 99999999763 33344778889999999999988777533 677777643
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00051 Score=68.50 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=54.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
...++|-||+||.|..++++|..+|+ +-.+ ..|+..+ +...-..-+.+.-..++.+++.+++.++++++
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~-~~aL--------AgRs~~k--l~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~V 74 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGL-TAAL--------AGRSSAK--LDALRASLGPEAAVFPLGVPAALEAMASRTQV 74 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCC-chhh--------ccCCHHH--HHHHHHhcCccccccCCCCHHHHHHHHhcceE
Confidence 45799999999999999999999996 5433 3554431 11110111233334455568999999999999
Q ss_pred EEEcccCC
Q 007866 88 VFYVDATD 95 (586)
Q Consensus 88 Vih~aa~~ 95 (586)
|+||+|+.
T Consensus 75 VlncvGPy 82 (382)
T COG3268 75 VLNCVGPY 82 (382)
T ss_pred EEeccccc
Confidence 99999997
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00052 Score=60.04 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=55.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCC-eEEEEccCCCHHHHHHHhcCCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGR-AEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~-~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
||.|+||||++|+.+++.|.++.+.++..+ ..++.+.+ .+..... ... ......| .+.+ .+.++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~D 68 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVAL-------VSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPE----ELSDVD 68 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEE-------EESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGH----HHTTES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEe-------eeeccccCCeeehhccccccccceeEee-cchh----HhhcCC
Confidence 689999999999999999999876665542 22222111 1111111 011 1222222 2333 348899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
+||.|.+. ..+..+...+.+.|+ ++|=.|+..
T Consensus 69 vvf~a~~~---------------~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 69 VVFLALPH---------------GASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp EEEE-SCH---------------HHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred EEEecCch---------------hHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 99998643 123456667778887 666666553
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00057 Score=61.52 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=74.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|++|.+|++++..|...+. .+++++|+.... ..... -.+.+. ....+..... .+ .+.++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~i~~---~~----~~~~~~a 70 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDK--AEGEA-LDLSHASAPLPSPVRITS---GD----YEALKDA 70 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHH--HHHHH-HHHHHHHHGSTEEEEEEE---SS----GGGGTTE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccc--ceeee-hhhhhhhhhccccccccc---cc----ccccccc
Confidence 6899999999999999999998863 479998876421 00000 000000 0001122222 22 3457899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+||.. .+..+.....+.|..-.+.+.+...+.+-+ .++.+|
T Consensus 71 Divvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 71 DIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred cEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 9999999986 345567888899999999999999888743 344443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0041 Score=64.57 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~--~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|++|+|.||||++|+.+++.|.++||. +++. +.+..+.+.... + .+.+....|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~--------l~s~~~~g~~l~-~--~g~~i~v~d~~~~-----~~~~v 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRL--------LASARSAGKELS-F--KGKELKVEDLTTF-----DFSGV 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEE--------EEccccCCCeee-e--CCceeEEeeCCHH-----HHcCC
Confidence 479999999999999999999998752 4566 333322211111 1 1234555566432 34689
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||-+++.. .+..+++...+.|+ .+|=.||..
T Consensus 65 DvVf~A~g~g---------------~s~~~~~~~~~~G~-~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFSAGGS---------------VSKKYAPKAAAAGA-VVIDNSSAF 97 (334)
T ss_pred CEEEECCChH---------------HHHHHHHHHHhCCC-EEEECCchh
Confidence 9999877542 13445566666776 566666653
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=66.28 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=56.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|++|.|+||||++|..+++.|.+++| .+++.+.. ..+.+. .+...+. ..++.+.+.. .++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s--------~~~aG~---~l~~~~~---~l~~~~~~~~--~~~~v 67 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS--------SESAGH---SVPFAGK---NLRVREVDSF--DFSQV 67 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC--------cccCCC---eeccCCc---ceEEeeCChH--HhcCC
Confidence 57999999999999999999997765 23444211 111111 1111111 2233222211 25789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
|+||-+.+.. ....+++.+.++|+ ++|=.||..-
T Consensus 68 D~vFla~p~~---------------~s~~~v~~~~~~G~-~VIDlS~~fR 101 (336)
T PRK05671 68 QLAFFAAGAA---------------VSRSFAEKARAAGC-SVIDLSGALP 101 (336)
T ss_pred CEEEEcCCHH---------------HHHHHHHHHHHCCC-eEEECchhhc
Confidence 9999876421 12347777778887 5777777654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0084 Score=57.26 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--C--CC------------CCCCCCCCCeEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--N--SL------------LPDSLSSGRAEYH 68 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~--~~------------~~~~l~~~~~~~~ 68 (586)
...+|+|.|+.| +|.++++.|...|..+++++|.+. ..++.|..- . .. +.+..+.-+++.+
T Consensus 18 ~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~ 96 (198)
T cd01485 18 RSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV 96 (198)
T ss_pred hhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 357899998877 999999999999977899988773 333444310 0 00 0111122244555
Q ss_pred EccCCC-HHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 69 QVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 69 ~~Dl~d-~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
..++.+ .+...+.++++|+||.+... .. ....+-+.|++.++ .+|++++.+.||.
T Consensus 97 ~~~~~~~~~~~~~~~~~~dvVi~~~d~------~~--------~~~~ln~~c~~~~i-p~i~~~~~G~~G~ 152 (198)
T cd01485 97 EEDSLSNDSNIEEYLQKFTLVIATEEN------YE--------RTAKVNDVCRKHHI-PFISCATYGLIGY 152 (198)
T ss_pred ecccccchhhHHHHHhCCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEeecCEEE
Confidence 555542 34456778899999976321 22 22335678999887 6999998888764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=61.15 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCC-C-CCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l-~-~~~~~~~~~Dl~d~~~l 78 (586)
+++||.|+|++|.+|+.++..|...|.. ++.++|+........... -.+.+.. . ..++.. .. ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a-~Dl~~~~~~~~~~~~i-~~------~~ 74 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVV-MELDDCAFPLLAGVVI-TD------DP 74 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceee-hhhhhhhhhhcCCcEE-ec------Ch
Confidence 4679999999999999999998876532 688988743210011100 0111111 0 012222 11 12
Q ss_pred HHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecC
Q 007866 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNST 132 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS 132 (586)
.+.++++|+||-+||.. .+..+.....+.|+.-.+.+.+...++. -..+|.+|-
T Consensus 75 y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 46788999999999976 3455678889999999999999998843 345666663
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=59.97 Aligned_cols=117 Identities=18% Similarity=0.104 Sum_probs=78.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|||.|+|++|.+|++++-.|...|. .++.++|+.. .+... -.+.+.. ......... . .+++.+.++++|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~----a~g~a-lDL~~~~--~~~~i~~~~-~-~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN----TPGVA-ADLSHIN--TPAKVTGYL-G-PEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc----cceee-hHhHhCC--CcceEEEec-C-CCchHHhcCCCCE
Confidence 5899999999999999999988774 3799988751 11110 0111111 111222110 1 1224567899999
Q ss_pred EEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 88 VFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 88 Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
||-+||.. .+..+.....+.|..-.+.+.+..++++.+ .+|.+|-+.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99999986 345567889999999999999999888754 455555443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0037 Score=65.07 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEE-EccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYH-QVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~-~~Dl~d~~~l~~~l~~~ 85 (586)
|++|+|.||||++|+.+++.|.+....++.++ .+..+.+ ...... ++.... ..++.+.+.. .+.++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v--------~~~~~~g~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~v 69 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAV--------TSRSSAGKPLSDVH--PHLRGLVDLVLEPLDPE--ILAGA 69 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEE--------ECccccCcchHHhC--cccccccCceeecCCHH--HhcCC
Confidence 58999999999999999999998855676652 2211111 011100 111111 1123333322 45779
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
|+||-+.... ....++.++.++|+ ++|=.|+..-+
T Consensus 70 D~Vf~alP~~---------------~~~~~v~~a~~aG~-~VID~S~~fR~ 104 (343)
T PRK00436 70 DVVFLALPHG---------------VSMDLAPQLLEAGV-KVIDLSADFRL 104 (343)
T ss_pred CEEEECCCcH---------------HHHHHHHHHHhCCC-EEEECCcccCC
Confidence 9999866331 12345666666775 78888877554
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0082 Score=61.74 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-c-----EEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-C-----IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~-----~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
++.||.|+|++|.+|++++..|...|. . ++.++|+........... -.+.+.. ...+... .. ..
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a-~Dl~~~~~~~~~~~~i-~~------~~ 73 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA-MELEDCAFPLLAGVVA-TT------DP 73 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH-HHHhhccccccCCcEE-ec------Ch
Confidence 357999999999999999999998874 2 688888743110011100 0111111 0011211 11 12
Q ss_pred HHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCC-C-EEEEec
Q 007866 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV-R-RLVYNS 131 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gv-k-r~I~~S 131 (586)
.+.++++|+||.+||.. .+..+.....+.|+.-.+.+.+.+.+++- + .++.+|
T Consensus 74 ~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred HHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 46788999999999986 34556788999999999999999998864 4 455554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.021 Score=57.91 Aligned_cols=113 Identities=18% Similarity=0.086 Sum_probs=75.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCC-CeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~-~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+||.|+|+ |.+|+.++-.|..++.. +++++|+... ..... .-.+.+..... .-..+.+| .| .+.++++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~--~~~G~-a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~aD 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEE--KAEGV-ALDLSHAAAPLGSDVKITGD-GD----YEDLKGAD 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccc--cccch-hcchhhcchhccCceEEecC-CC----hhhhcCCC
Confidence 58999999 99999999999887654 8999888632 11110 01111111111 11223333 22 45678999
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
+|+-+||.. .+........+.|..-.+.+.+...+.+-+-++.+
T Consensus 72 iVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV 116 (313)
T COG0039 72 IVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV 116 (313)
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 999999987 34446678899999999999999988876544433
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0032 Score=61.50 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=42.8
Q ss_pred cCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh-------cCCCE
Q 007866 15 NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-------EGAST 87 (586)
Q Consensus 15 GatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l-------~~~D~ 87 (586)
.++|.||++++++|.++| ++|++.+ +... ... . ....+|+.+.++..+++ .++|+
T Consensus 22 ~SSGgIG~AIA~~la~~G-a~Vvlv~--------~~~~---l~~----~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDi 83 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAG-HEVTLVT--------TKRA---LKP----E--PHPNLSIREIETTKDLLITLKELVQEHDI 83 (227)
T ss_pred CcccHHHHHHHHHHHHCC-CEEEEEc--------Chhh---ccc----c--cCCcceeecHHHHHHHHHHHHHHcCCCCE
Confidence 348999999999999999 5888843 2111 000 0 01347888876665443 35899
Q ss_pred EEEcccCC
Q 007866 88 VFYVDATD 95 (586)
Q Consensus 88 Vih~aa~~ 95 (586)
+||+||..
T Consensus 84 LVnnAgv~ 91 (227)
T TIGR02114 84 LIHSMAVS 91 (227)
T ss_pred EEECCEec
Confidence 99999975
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=58.78 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=75.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
||.|+|++|.+|++++-.|...+. .++.++|+... . ...-.+.+.. ......... +.+++.+.++++|+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a---~--g~a~DL~~~~--~~~~i~~~~--~~~~~~~~~~daDiv 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA---A--GVAADLSHIP--TAASVKGFS--GEEGLENALKGADVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC---c--EEEchhhcCC--cCceEEEec--CCCchHHHcCCCCEE
Confidence 689999999999999999988774 47999887531 0 1100111111 111222101 012245688999999
Q ss_pred EEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Q 007866 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (586)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr-~I~~S 131 (586)
|-+||.. .+..+.....+.|+.-.+.+.+...+++.+- +|.+|
T Consensus 72 vitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 72 VIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred EEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999986 3455677889999999999999998887543 44444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0037 Score=54.89 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=53.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~---~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|||.|.|++|-.|+.+++.+.+....++.+. ..|.++.. ...... ...++.. .+.+.++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~-------v~~~~~~~~g~d~g~~~~~~~~~~~v-------~~~l~~~~~ 66 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGA-------VDRKPSAKVGKDVGELAGIGPLGVPV-------TDDLEELLE 66 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEE-------EETTTSTTTTSBCHHHCTSST-SSBE-------BS-HHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEE-------EecCCcccccchhhhhhCcCCccccc-------chhHHHhcc
Confidence 5899999999999999999999543565542 23332100 000000 0111111 144567777
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
.+|+||++.. ..++...++.|.++|+ .+|.-+|
T Consensus 67 ~~DVvIDfT~---------------p~~~~~~~~~~~~~g~-~~ViGTT 99 (124)
T PF01113_consen 67 EADVVIDFTN---------------PDAVYDNLEYALKHGV-PLVIGTT 99 (124)
T ss_dssp H-SEEEEES----------------HHHHHHHHHHHHHHT--EEEEE-S
T ss_pred cCCEEEEcCC---------------hHHhHHHHHHHHhCCC-CEEEECC
Confidence 7999999862 2345567888888887 4554443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=61.91 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
++++|+|+||||++|+.+++.|.+..+.++.++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 468999999999999999999998876688885
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0062 Score=64.17 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEE
Q 007866 6 AIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69 (586)
Q Consensus 6 ~~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~ 69 (586)
..+++|+|||| ||.+|..++++|.++| .+|++ +.+..... .... ...
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~--------~~g~~~~~------~~~~--~~~ 245 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTL--------ITGPVSLL------TPPG--VKS 245 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEE--------eCCCCccC------CCCC--cEE
Confidence 56799999999 4789999999999999 58888 34332210 1112 246
Q ss_pred ccCCCHHHH-HHHh----cCCCEEEEcccCC
Q 007866 70 VDVRDISQI-KKVL----EGASTVFYVDATD 95 (586)
Q Consensus 70 ~Dl~d~~~l-~~~l----~~~D~Vih~aa~~ 95 (586)
.|+.+.+++ .+++ .++|++|++||..
T Consensus 246 ~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavs 276 (390)
T TIGR00521 246 IKVSTAEEMLEAALNELAKDFDIFISAAAVA 276 (390)
T ss_pred EEeccHHHHHHHHHHhhcccCCEEEEccccc
Confidence 788888777 4444 3589999999987
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.01 Score=61.58 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCCC----------------CCCCCCCCCCeEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNS----------------LLPDSLSSGRAEYH 68 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~~----------------~~~~~l~~~~~~~~ 68 (586)
...+|+|.|+ |.+|++++..|.+.|.-+++++|.+. ..++.|+.-.. .+.+....-+++.+
T Consensus 23 ~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 4578999976 99999999999999976899988864 22344431100 00011112245566
Q ss_pred EccCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 69 ~~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
..|+. .+.+.++++++|+||.+... + ..-..+-++|.+.++ .+|+.|+.+.||.
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~Dn------~--------~~r~~ln~~~~~~~i-P~i~~~~~g~~G~ 155 (339)
T PRK07688 102 VQDVT-AEELEELVTGVDLIIDATDN------F--------ETRFIVNDAAQKYGI-PWIYGACVGSYGL 155 (339)
T ss_pred eccCC-HHHHHHHHcCCCEEEEcCCC------H--------HHHHHHHHHHHHhCC-CEEEEeeeeeeeE
Confidence 66764 45667788999999998532 2 222346678888886 6999998888764
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0091 Score=61.90 Aligned_cols=115 Identities=10% Similarity=0.118 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-----C-----------CCCCCCCCCCeEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-----S-----------LLPDSLSSGRAEYH 68 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~-----~-----------~~~~~l~~~~~~~~ 68 (586)
..++|+|.|+ |-+|+++++.|.+.|.-+++++|.+. ..++.|..-- + .+.+....-+++.+
T Consensus 23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4678999976 77999999999999976899988875 2234443110 0 00011122345666
Q ss_pred EccCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 69 ~~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
..|+. .+.+.++++++|+||.+... ++. -..+-++|.+.|+ .+|+.+..+.+|.
T Consensus 102 ~~~~~-~~~~~~~~~~~DlVid~~D~------~~~--------r~~in~~~~~~~i-p~i~~~~~g~~G~ 155 (338)
T PRK12475 102 VTDVT-VEELEELVKEVDLIIDATDN------FDT--------RLLINDLSQKYNI-PWIYGGCVGSYGV 155 (338)
T ss_pred eccCC-HHHHHHHhcCCCEEEEcCCC------HHH--------HHHHHHHHHHcCC-CEEEEEecccEEE
Confidence 67774 45678889999999998632 211 1224568888887 5888888777763
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.027 Score=57.84 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCC-CCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~-~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++||.|+|+ |.+|+.++-.|...|.. ++.++|+.... ... ....+.+.... .++... . .+ .+.+++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~--~~g-~~~Dl~~~~~~~~~~~i~-~--~~----~~~~~~ 73 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEK--AEG-DAMDLSHAVPFTSPTKIY-A--GD----YSDCKD 73 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCch--hHH-HHHHHHhhccccCCeEEE-e--CC----HHHhCC
Confidence 3579999998 99999999999988843 79998875421 100 00011111110 123333 2 22 235789
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+||-+||.. .+..+.....+.|..-.+.+++.+++++.+ .++.+|
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99999999986 344566788999999999999999887654 445444
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=58.14 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~-~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+++|.|+|++|.+|+.+++.+.+.+..++.+ +|... +... .. -..++...+++.++++++|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~--------~~~~--~~--------~~~~i~~~~dl~~ll~~~D 62 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG--------SPLV--GQ--------GALGVAITDDLEAVLADAD 62 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC--------cccc--cc--------CCCCccccCCHHHhccCCC
Confidence 4799999999999999999988754346554 33322 1100 00 1113323344566677899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
+||+++.+. ....+++.|.++|+ ++|
T Consensus 63 vVid~t~p~---------------~~~~~~~~al~~G~-~vv 88 (257)
T PRK00048 63 VLIDFTTPE---------------ATLENLEFALEHGK-PLV 88 (257)
T ss_pred EEEECCCHH---------------HHHHHHHHHHHcCC-CEE
Confidence 999998432 12346677777786 444
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.02 Score=55.99 Aligned_cols=93 Identities=18% Similarity=0.101 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC---CCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~---~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|+||.|.|++|-.|+.+++.+.+.++.++.+. +.|.++... ..... +......-+.|. +.....
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa-------~~~~~~~~~g~d~ge~~---g~~~~gv~v~~~--~~~~~~ 68 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAA-------FDRPGSLSLGSDAGELA---GLGLLGVPVTDD--LLLVKA 68 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEE-------EecCCccccccchhhhc---cccccCceeecc--hhhccc
Confidence 368999999999999999999999876565542 333322100 00000 111111111111 344456
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCE
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr 126 (586)
++|++|.+..+ .++...++.|.+++++-
T Consensus 69 ~~DV~IDFT~P---------------~~~~~~l~~~~~~~~~l 96 (266)
T COG0289 69 DADVLIDFTTP---------------EATLENLEFALEHGKPL 96 (266)
T ss_pred CCCEEEECCCc---------------hhhHHHHHHHHHcCCCe
Confidence 78999998755 24566788888888643
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=61.31 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEe-cCCcccccCCCCCCCC-CCCCCCCCCeEEE-EccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT-DSTQSLQLDPSESNSL-LPDSLSSGRAEYH-QVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~-d~~~~~~l~r~~~~~~-~~~~l~~~~~~~~-~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|.||||++|..+++.|.+....++..+ +... +.+. +.... +.+... ..++.+.+ ..++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~--------sagk~~~~~~--~~l~~~~~~~~~~~~-~~~~~~~~ 69 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE--------SAGKPVSEVH--PHLRGLVDLNLEPID-EEEIAEDA 69 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch--------hcCCChHHhC--ccccccCCceeecCC-HHHhhcCC
Confidence 5899999999999999999998865677742 3221 1111 11001 111111 11122111 12333579
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
|+||-+.... ....++..+.++| +++|=.|+..-+
T Consensus 70 DvVf~alP~~---------------~s~~~~~~~~~~G-~~VIDlS~~fR~ 104 (346)
T TIGR01850 70 DVVFLALPHG---------------VSAELAPELLAAG-VKVIDLSADFRL 104 (346)
T ss_pred CEEEECCCch---------------HHHHHHHHHHhCC-CEEEeCChhhhc
Confidence 9999877442 2455677777778 488988887554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0091 Score=56.20 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=44.2
Q ss_pred CCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~ 70 (586)
.+++||||+| ||-.|..|++++..+|+ +|+. +.+... . -.+.+++.+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga-~V~l--------i~g~~~---~---~~p~~~~~i~v 66 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA-EVTL--------IHGPSS---L---PPPPGVKVIRV 66 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEE--------EE-TTS----------TTEEEEE-
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC-EEEE--------EecCcc---c---cccccceEEEe
Confidence 4688888866 79999999999999995 8877 333211 0 01235666665
Q ss_pred cCCC--HHHHHHHhcCCCEEEEcccCC
Q 007866 71 DVRD--ISQIKKVLEGASTVFYVDATD 95 (586)
Q Consensus 71 Dl~d--~~~l~~~l~~~D~Vih~aa~~ 95 (586)
+-.+ .+.+.+.+.++|++||+||..
T Consensus 67 ~sa~em~~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 67 ESAEEMLEAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp SSHHHHHHHHHHHGGGGSEEEE-SB--
T ss_pred cchhhhhhhhccccCcceeEEEecchh
Confidence 4221 233445556789999999997
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0072 Score=70.74 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcE-------------EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCI-------------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~-------------V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~ 73 (586)
.+++|+|.|+ |++|+..++.|.+.+..+ |.+.|.... +.. .+... .++++.+..|+.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~----~a~---~la~~--~~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK----DAK---ETVEG--IENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH----HHH---HHHHh--cCCCceEEeecC
Confidence 4679999986 999999999998865333 676554421 100 01110 135678999999
Q ss_pred CHHHHHHHhcCCCEEEEcccC
Q 007866 74 DISQIKKVLEGASTVFYVDAT 94 (586)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~ 94 (586)
|.+++.++++++|+||.+...
T Consensus 638 D~e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 638 DSESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred CHHHHHHhhcCCCEEEECCCc
Confidence 999999999999999999865
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=57.06 Aligned_cols=96 Identities=23% Similarity=0.255 Sum_probs=66.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHH-hcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKV-LEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~-l~~~D 86 (586)
|+++|. |.|-+|+++++.|.+.|| +|.+.|..... .. .... ......+.+|-.|++.|.++ ++++|
T Consensus 1 m~iiIi-G~G~vG~~va~~L~~~g~-~Vv~Id~d~~~--~~--------~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIII-GAGRVGRSVARELSEEGH-NVVLIDRDEER--VE--------EFLADELDTHVVIGDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEE-CCcHHHHHHHHHHHhCCC-ceEEEEcCHHH--HH--------HHhhhhcceEEEEecCCCHHHHHhcCCCcCC
Confidence 577777 569999999999999996 88886665431 11 1011 24678899999999999988 78999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
+|+=+.+.. +.|...+ .-++++.|++++|-
T Consensus 69 ~vva~t~~d----------~~N~i~~---~la~~~~gv~~via 98 (225)
T COG0569 69 AVVAATGND----------EVNSVLA---LLALKEFGVPRVIA 98 (225)
T ss_pred EEEEeeCCC----------HHHHHHH---HHHHHhcCCCcEEE
Confidence 999766542 2233221 12334478887773
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.05 Score=56.09 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
..+||.|.| +|.+|+.++..+...|...++++|+.......+.-+... .............. .|. +.++++|
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~-~~~~~~~~~~I~~~--~d~----~~l~~aD 76 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISH-SNVIAGSNSKVIGT--NNY----EDIAGSD 76 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHh-hhhccCCCeEEEEC--CCH----HHhCCCC
Confidence 347999999 599999999999988865799988876421000000000 00011112233221 222 3578999
Q ss_pred EEEEcccCCC-CCC-----ChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 87 TVFYVDATDL-NTD-----DFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 87 ~Vih~aa~~~-~~~-----~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
+||.+++... +.. +.......|..-.+.+.+.+.+.+-+ .+|.+|-+.
T Consensus 77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 9999998762 222 45667788999899999988888755 677777543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.034 Score=53.02 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCCC---------CCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNSL---------LPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~-----~~~~---------~~~~l~~~~~~~~~~ 70 (586)
...+|+|.|+.| +|.++++.|...|..+++++|.+. ..++.|.- +-+. +.+..+.-+++.+..
T Consensus 20 ~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 357899998766 999999999999977899988774 22333321 0000 011112223444555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
.+.+ ...+.++++|+||.+... +.. -..+-+.|++.++ .+|++++.+.+|.
T Consensus 99 ~~~~--~~~~~~~~~dvVi~~~~~------~~~--------~~~ln~~c~~~~i-p~i~~~~~G~~G~ 149 (197)
T cd01492 99 DISE--KPEEFFSQFDVVVATELS------RAE--------LVKINELCRKLGV-KFYATGVHGLFGF 149 (197)
T ss_pred Cccc--cHHHHHhCCCEEEECCCC------HHH--------HHHHHHHHHHcCC-CEEEEEecCCEEE
Confidence 5542 235567899999976422 222 2335578899987 6899998887753
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.014 Score=60.56 Aligned_cols=92 Identities=16% Similarity=0.251 Sum_probs=56.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcE--EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~--V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|.||||++|+.|++.|.+++|.. +.. +.+..+.+.. +...+......|+. ...+.++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~--------~as~~~~g~~---~~~~~~~~~~~~~~-----~~~~~~~D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL--------LASDRSAGRK---VTFKGKELEVNEAK-----IESFEGIDI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE--------EeccccCCCe---eeeCCeeEEEEeCC-----hHHhcCCCE
Confidence 58999999999999999999987632 223 2222222111 11123456666664 223578999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
||-+++.. -+..++..+.+.|+ ++|=.||.
T Consensus 65 v~~a~g~~---------------~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 65 ALFSAGGS---------------VSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred EEECCCHH---------------HHHHHHHHHHHCCC-EEEECCHH
Confidence 99988653 13345555666787 46655654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.065 Score=47.69 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=75.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCC------------CCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPD------------SLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~~------------~l~~~~~~~~~~D 71 (586)
.++|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|..- ...... ..+.-+++.+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 36899985 599999999999999977899988775 234455321 000000 0122345666667
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
+ +.+...+.++++|+||.+... ......+.+.|++.+. .+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~~~~d~vi~~~d~--------------~~~~~~l~~~~~~~~~-p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDYDIVIDCVDS--------------LAARLLLNEICREYGI-PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTSSEEEEESSS--------------HHHHHHHHHHHHHTT--EEEEEEEETTEE
T ss_pred c-ccccccccccCCCEEEEecCC--------------HHHHHHHHHHHHHcCC-CEEEEEeecCEE
Confidence 7 556678888999999997533 1223346778999887 799888776654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.054 Score=55.81 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+||.|+|| |.+|+.++..|...|..+++++|+.........- .+... ........ .+ -.|. + .++++
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~l---Dl~~~~~~~~~~~~i-~~-~~d~---~-~l~~A 74 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKAL---DLKHFSTLVGSNINI-LG-TNNY---E-DIKDS 74 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHH---HHhhhccccCCCeEE-Ee-CCCH---H-HhCCC
Confidence 579999997 9999999999888884579998886532110000 01111 01111122 21 1232 3 67899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE-EEEecCc
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNSTA 133 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr-~I~~SS~ 133 (586)
|+||-+++.. ............|..-.+.+.+.+.+.+-+. +|.+|-+
T Consensus 75 DiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP 124 (319)
T PTZ00117 75 DVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124 (319)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 9999999876 2344567788889988899999888886554 6666643
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.047 Score=56.73 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..++|.|.||||++|..+++.|.+++| .++..+.. .|+..+. . ...+......++. . +.+++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las------~rsaGk~-~----~~~~~~~~v~~~~-~----~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS------ARSAGKK-V----TFEGRDYTVEELT-E----DSFDG 69 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc------cCCCCCe-e----eecCceeEEEeCC-H----HHHcC
Confidence 457999999999999999999999775 23444211 2222211 1 1112233333442 2 23578
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+|+||.+++.. .+..++..+.+.|+ ++|=.|+..-+
T Consensus 70 ~D~vf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~fR~ 105 (344)
T PLN02383 70 VDIALFSAGGS---------------ISKKFGPIAVDKGA-VVVDNSSAFRM 105 (344)
T ss_pred CCEEEECCCcH---------------HHHHHHHHHHhCCC-EEEECCchhhc
Confidence 99999877542 13335555556675 67777776543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0073 Score=61.99 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
+|+|.|+| +|.+|..++..|+++|+ +|+++|+..
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 46899998 89999999999999995 999977754
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.053 Score=55.44 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=72.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CC-CCCeEEEEccCCCHHHHHHHhcCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LS-SGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~-~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
||.|.|+ |.+|+.++..|+.+|. .++.++|+.... .+... -.+.+. +. ..++....+| .+.++++
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~--a~g~a-~DL~~~~~~~~~~~~~i~~~~-------y~~~~~a 69 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGV--AEGEA-LDFHHATALTYSTNTKIRAGD-------YDDCADA 69 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcch--hhHHH-HHHHhhhccCCCCCEEEEECC-------HHHhCCC
Confidence 5889998 9999999999998874 379998875431 11110 011111 11 1234444333 3567899
Q ss_pred CEEEEcccCCC-CCCC--hhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 86 STVFYVDATDL-NTDD--FYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~--~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
|+||-+||... +..+ .....+.|+.-.+.+.+...+++.+-++.
T Consensus 70 DivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~i 116 (307)
T cd05290 70 DIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVII 116 (307)
T ss_pred CEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 99999999862 2222 47888999999999999999987554443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.028 Score=60.03 Aligned_cols=181 Identities=10% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc---CCc---EEEEecCCcccccCCCCCCCCCCCCC-C-CCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL---GKC---IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~---g~~---~V~~~d~~~~~~l~r~~~~~~~~~~l-~-~~~~~~~~~Dl~d~~~l 78 (586)
.+-+|+||||+|.||.+|+..+.+- |.. .++++|+.+.....+...- .+.+.. . ..++... .| +
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~am-DL~D~a~pll~~v~i~-~~--~---- 193 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVM-EVEDLAFPLLRGISVT-TD--L---- 193 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHH-HHHHhHHhhcCCcEEE-EC--C----
Confidence 3468999999999999999998862 422 3667665321001110000 000000 0 0123332 22 2
Q ss_pred HHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCCCCCcccCCC
Q 007866 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~ 155 (586)
.+.++++|+||-+||.. .+..+.....+.|..-.+.+.++..+++- .+++.+.|-=+= ......-...| ...
T Consensus 194 ~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~ap-giP 268 (452)
T cd05295 194 DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAP-SIP 268 (452)
T ss_pred HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcC-CCC
Confidence 46789999999999986 34456788899999999999999988865 566665542110 00000000000 011
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHH
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVP 200 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~ 200 (586)
+....|.+....-++....+++.|+++..++-..|+|.....-++
T Consensus 269 ~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvp 313 (452)
T cd05295 269 RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYI 313 (452)
T ss_pred HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceee
Confidence 222223322333333333455567777777777888875544444
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.038 Score=57.53 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~---V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|++|.|.||||++|+.+++.|+++.+.. ++.+... ...+... .+. +-.....++.|.+. +.+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~--------~sg~~~~-~f~--g~~~~v~~~~~~~~----~~~ 65 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS--------QAGGAAP-SFG--GKEGTLQDAFDIDA----LKK 65 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch--------hhCCccc-ccC--CCcceEEecCChhH----hcC
Confidence 3789999999999999999777765555 5552221 1111111 111 11223334444432 468
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
+|+||.+++.. .+..+...+.++|++ .+|=.||..
T Consensus 66 ~Divf~a~~~~---------------~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 66 LDIIITCQGGD---------------YTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred CCEEEECCCHH---------------HHHHHHHHHHhCCCCeEEEECChHH
Confidence 99999887542 244566677778864 456555554
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0061 Score=61.93 Aligned_cols=83 Identities=7% Similarity=0.124 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~--~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+++++|+|| |-+|+.++..|.+.|..+|+++++.... ..|. ..+.+.+. ...+....+|+.+.+++.+.++.
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~-~~~a---~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDF-YERA---EQTAEKIKQEVPECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchH-HHHH---HHHHHHHhhcCCCceeEEechhhhhHHHhhhcc
Confidence 4689999998 8999999999999996459985543200 0000 00101111 12334556777777777777777
Q ss_pred CCEEEEcccC
Q 007866 85 ASTVFYVDAT 94 (586)
Q Consensus 85 ~D~Vih~aa~ 94 (586)
+|+|||+...
T Consensus 200 ~DilINaTp~ 209 (289)
T PRK12548 200 SDILVNATLV 209 (289)
T ss_pred CCEEEEeCCC
Confidence 7887776544
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.04 Score=54.50 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-----C---------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-----S---------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~-----~---------~~~~~l~~~~~~~~~~ 70 (586)
...+|+|.|+ |-+|+++++.|...|.-+++++|.+. ..++.|+.-. + .+.+....-+++.+..
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 4579999987 99999999999999966788887765 2234342110 0 0001111224455555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
.+. .+.+.+.++++|+||.+... ++ .-..+-++|+++++ .+|+.++.+-+
T Consensus 110 ~i~-~~~~~~~~~~~DiVi~~~D~------~~--------~r~~ln~~~~~~~i-p~v~~~~~g~~ 159 (245)
T PRK05690 110 RLD-DDELAALIAGHDLVLDCTDN------VA--------TRNQLNRACFAAKK-PLVSGAAIRME 159 (245)
T ss_pred cCC-HHHHHHHHhcCCEEEecCCC------HH--------HHHHHHHHHHHhCC-EEEEeeeccCC
Confidence 554 45567788999999998632 21 12235678888886 68877665444
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.063 Score=55.02 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=73.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++|.|.|+ |.+|+.++..|+..|. +++.++|+.... ..... ..+.+.. ...+.... . .+. +.+.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~--~~~~a-~dL~~~~~~~~~~~~i~-~--~~~----~~l~~a 69 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEK--AEGEA-LDLEDALAFLPSPVKIK-A--GDY----SDCKDA 69 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcch--hhHhH-hhHHHHhhccCCCeEEE-c--CCH----HHhCCC
Confidence 47999985 9999999999999984 289997775421 11000 0111110 01122222 2 232 246899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||.+++.. .+..+.....+.|..-.+.+.+..++++-+ .+|.+|
T Consensus 70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999999986 344466788999999999999999988644 455555
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.13 Score=46.29 Aligned_cols=142 Identities=18% Similarity=0.066 Sum_probs=79.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---------HHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---------ISQI 78 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---------~~~l 78 (586)
..+|+|-||-|-+|+..++.+.+++ |.|.-+|... ++.. . .-+.+|-++ .+++
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~e------Ne~A----------d-~sI~V~~~~swtEQe~~v~~~v 64 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSE------NEQA----------D-SSILVDGNKSWTEQEQSVLEQV 64 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeecc------cccc----------c-ceEEecCCcchhHHHHHHHHHH
Confidence 4689999999999999999999999 6777766532 1110 1 112233322 1334
Q ss_pred HHHhc--CCCEEEEcccCCC--C------CCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCC
Q 007866 79 KKVLE--GASTVFYVDATDL--N------TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 79 ~~~l~--~~D~Vih~aa~~~--~------~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
.+.++ ++|+||-.||--. . ..|.+..++-.+-...--...+.++ +..-++....+..--
T Consensus 65 g~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl---------- 134 (236)
T KOG4022|consen 65 GSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAAL---------- 134 (236)
T ss_pred HHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccccc----------
Confidence 44554 4899999988641 1 1223333333332222112222222 222333333222210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-CCce
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLL 181 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-~gl~ 181 (586)
+ +...--.||..|....++.++.+.+ .|+|
T Consensus 135 ~----gTPgMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 135 G----GTPGMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred C----CCCcccchhHHHHHHHHHHHHhcccccCCC
Confidence 0 2233567999999999999988654 4554
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.023 Score=58.27 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC--CCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS--SGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~--~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
||||.|.|| |.+|..++..+...|..+|+++|+..+. .+.... .+.+... ...... ... .|. +.++++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~--~~~~~~-dl~~~~~~~~~~~~i-~~~-~d~----~~~~~a 71 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGV--PQGKAL-DIAEAAPVEGFDTKI-TGT-NDY----EDIAGS 71 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCch--hHHHHH-HHHhhhhhcCCCcEE-EeC-CCH----HHHCCC
Confidence 589999998 9999999999998873389998885532 111000 0001100 011121 111 122 347899
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecC
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS 132 (586)
|+||-+++... ...+.......|..-.+.+++...+.+-+ .+|.+|-
T Consensus 72 DiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 72 DVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998752 33344566678888888888888777544 3666553
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.1 Score=51.49 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
+|++|+|.|||+ =|+.+++.|.+.| +.|.+. .-.+... .....+....+-+.|.+++.+.++ +
T Consensus 1 ~~~~IlvlgGT~-egr~la~~L~~~g-~~v~~S--------vat~~g~-----~~~~~~~v~~G~l~~~~~l~~~l~~~~ 65 (248)
T PRK08057 1 MMPRILLLGGTS-EARALARALAAAG-VDIVLS--------LAGRTGG-----PADLPGPVRVGGFGGAEGLAAYLREEG 65 (248)
T ss_pred CCceEEEEechH-HHHHHHHHHHhCC-CeEEEE--------EccCCCC-----cccCCceEEECCCCCHHHHHHHHHHCC
Confidence 367899999986 5999999999999 576662 2222111 123466788888889999999996 6
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
++.||+..-+ +. ..-+.|+.++|++.|++-+=
T Consensus 66 i~~VIDATHP------fA------~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 66 IDLVIDATHP------YA------AQISANAAAACRALGIPYLR 97 (248)
T ss_pred CCEEEECCCc------cH------HHHHHHHHHHHHHhCCcEEE
Confidence 9999996533 22 23467899999999986333
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.021 Score=61.90 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=55.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
|+|+|+|+ |.+|+++++.|.+.|+ +|+++|... +.. .......+++.+.+|..+.+.+.++ ++++|+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~-~v~vid~~~--------~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN-DVTVIDTDE--------ERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-cEEEEECCH--------HHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCE
Confidence 58999987 9999999999999995 888855433 210 0000113678999999999999888 788999
Q ss_pred EEEccc
Q 007866 88 VFYVDA 93 (586)
Q Consensus 88 Vih~aa 93 (586)
||-+..
T Consensus 69 vi~~~~ 74 (453)
T PRK09496 69 LIAVTD 74 (453)
T ss_pred EEEecC
Confidence 987753
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.084 Score=51.64 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCCC--CCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNS--LLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~~--~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+++++.|...|.-+++++|.+. ..++.|..--. ... +....-+++.+..
T Consensus 20 ~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 457899996 699999999999999977888887765 22344421100 000 0011124555555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
++ +.+.+.+.++++|+||.+... +. .-..+-++|.+.++ .+|+++..+.+|
T Consensus 99 ~i-~~~~~~~~~~~~DvVi~~~d~------~~--------~r~~l~~~~~~~~i-p~i~~g~~g~~g 149 (228)
T cd00757 99 RL-DAENAEELIAGYDLVLDCTDN------FA--------TRYLINDACVKLGK-PLVSGAVLGFEG 149 (228)
T ss_pred ee-CHHHHHHHHhCCCEEEEcCCC------HH--------HHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 55 356677888999999998643 11 12346678888886 688888776554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=63.10 Aligned_cols=77 Identities=22% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+.+++|+|+|+++ +|..+++.|+++| ++|++.|......+.+ ....+...++.++.+|..+ +...++
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~~~------~~~~l~~~~~~~~~~~~~~-----~~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQLKE------ALEELGELGIELVLGEYPE-----EFLEGV 69 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHH------HHHHHHhcCCEEEeCCcch-----hHhhcC
Confidence 3568999999888 9999999999999 5999977643110100 0011222356777888765 235679
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||+.++..
T Consensus 70 d~vv~~~g~~ 79 (450)
T PRK14106 70 DLVVVSPGVP 79 (450)
T ss_pred CEEEECCCCC
Confidence 9999988864
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=53.42 Aligned_cols=106 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|+|.|.|+ |.+|..++..|..+|. .+|.++|+.... .+... ..+.+.. .......... |. +.++++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~--~~g~a-~dl~~~~~~~~~~~i~~~---d~----~~l~~aD 69 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAK--AEGEA-MDLAHGTPFVKPVRIYAG---DY----ADCKGAD 69 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchh--hhhHH-HHHHccccccCCeEEeeC---CH----HHhCCCC
Confidence 57999987 9999999999999984 479998876431 11100 0011110 0012222222 32 3478999
Q ss_pred EEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
+||-+++... ...+.......|+.-.+.+.+..++.+-+
T Consensus 70 iViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~ 109 (308)
T cd05292 70 VVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPD 109 (308)
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999862 34456677888999999999988887644
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.17 Score=45.38 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=69.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCC------------CCCCCCCCeEEEEccCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLL------------PDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~------------~~~l~~~~~~~~~~Dl~ 73 (586)
+|+|.|+ |-+|+++++.|...|..+++++|.+. ..++.|..-- ... .+..+.-+++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5889875 99999999999999976899988764 2223332110 000 00011223444555554
Q ss_pred CHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
+. ...+.+.++|+||.+... + .....+.+.|++.++ .+|.+++....|
T Consensus 80 ~~-~~~~~~~~~diVi~~~d~------~--------~~~~~l~~~~~~~~i-~~i~~~~~g~~g 127 (143)
T cd01483 80 ED-NLDDFLDGVDLVIDAIDN------I--------AVRRALNRACKELGI-PVIDAGGLGLGG 127 (143)
T ss_pred hh-hHHHHhcCCCEEEECCCC------H--------HHHHHHHHHHHHcCC-CEEEEcCCCcEE
Confidence 33 336677899999998643 1 223457788999886 588887776443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.048 Score=55.64 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++.+|.|.|||||+|..|++.|.++.+.++.. +.++... |+.+. .+.+.++|
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~--------~~s~~~~-----------------~~~~~---~~~~~~~D 52 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLS--------IPEAKRK-----------------DAAAR---RELLNAAD 52 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEE--------EecCCCC-----------------cccCc---hhhhcCCC
Confidence 36799999999999999999999998545555 2222110 11111 23557899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
+||-+.... ....++..+.+.|+ ++|=.|+..
T Consensus 53 vvFlalp~~---------------~s~~~~~~~~~~g~-~VIDlSadf 84 (313)
T PRK11863 53 VAILCLPDD---------------AAREAVALIDNPAT-RVIDASTAH 84 (313)
T ss_pred EEEECCCHH---------------HHHHHHHHHHhCCC-EEEECChhh
Confidence 999876321 13345555556676 577777654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.058 Score=51.67 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CC---------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NS---------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~-----~~---------~~~~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+++++.|...|.-+++++|.+. ..++.|+.- -+ .+.+....-+++.+..
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 457899996 799999999999999966899988774 223333210 00 0001111123344444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
++ +.+.+.+.++++|+||.+... ++ .-..+-+.|+++++ .+|+.++.+.+|
T Consensus 99 ~i-~~~~~~~~~~~~D~Vi~~~d~------~~--------~r~~l~~~~~~~~i-p~i~~~~~g~~G 149 (202)
T TIGR02356 99 RV-TAENLELLINNVDLVLDCTDN------FA--------TRYLINDACVALGT-PLISAAVVGFGG 149 (202)
T ss_pred cC-CHHHHHHHHhCCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEeccCeE
Confidence 44 345677888999999997632 11 12335678888886 688888776664
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.072 Score=55.01 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..++|.|.||||++|..+++.|.++ ...+++.+... + +.+.... +....+.+. |+ + ...+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~------~--saG~~~~-~~~~~~~v~--~~---~--~~~~~~ 66 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE------E--SAGETLR-FGGKSVTVQ--DA---A--EFDWSQ 66 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc------C--cCCceEE-ECCcceEEE--eC---c--hhhccC
Confidence 4579999999999999999999985 44466663221 1 1111111 111112221 32 2 123468
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+|+||.+++.. .+..++..+.+.|+ ++|=.|+..-+
T Consensus 67 ~Dvvf~a~p~~---------------~s~~~~~~~~~~g~-~VIDlS~~fRl 102 (336)
T PRK08040 67 AQLAFFVAGRE---------------ASAAYAEEATNAGC-LVIDSSGLFAL 102 (336)
T ss_pred CCEEEECCCHH---------------HHHHHHHHHHHCCC-EEEECChHhcC
Confidence 99999877442 13446666666777 57777766543
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.099 Score=51.28 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+-||.|.||.|-||+.|...|.... ..+...+|+... ..- ...+.+. +-........-.+++++++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~---~GV--aaDlSHI----~T~s~V~g~~g~~~L~~al~~ 96 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANT---PGV--AADLSHI----NTNSSVVGFTGADGLENALKG 96 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccC---Ccc--ccccccc----CCCCceeccCChhHHHHHhcC
Confidence 346799999999999999987666543 134667776531 110 0111111 112223344446789999999
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+|+-=||.. .+.-..+..+++|..-.+.|.+++.++-.+ ++.++|
T Consensus 97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 99999999987 233345678899999999999998887543 444554
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.1 Score=54.30 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
++|.|+|++|++|+++++.|.++++.++..+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEE
Confidence 5899999999999999999988875566664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=52.65 Aligned_cols=97 Identities=15% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~---V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++|.|.||||++|+.+++.|.++.+.. ++.+... |+. +... .+......+. ++ |++ .+.+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~------~sa--Gk~~-~~~~~~l~v~--~~-~~~----~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK------RSA--GKTV-QFKGREIIIQ--EA-KIN----SFEG 68 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc------ccC--CCCe-eeCCcceEEE--eC-CHH----HhcC
Confidence 4799999999999999999999655455 5553221 111 1111 1111122222 22 333 2468
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+|+||.+++.. .+..+...+.+.|. .+|=.||..-+
T Consensus 69 ~Divf~a~~~~---------------~s~~~~~~~~~~G~-~VID~Ss~fR~ 104 (347)
T PRK06728 69 VDIAFFSAGGE---------------VSRQFVNQAVSSGA-IVIDNTSEYRM 104 (347)
T ss_pred CCEEEECCChH---------------HHHHHHHHHHHCCC-EEEECchhhcC
Confidence 99999877442 13446666667775 56766666543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.12 Score=54.11 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-----C---------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-----S---------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~-----~---------~~~~~l~~~~~~~~~~ 70 (586)
...+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|+.-- + .+.+....-+++.+..
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 4578999965 89999999999999977888888775 2234443110 0 0001112223455555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+. .+...+.++++|+||.+... +. .-..+-++|.+.++ .+|+.++.+.+|
T Consensus 106 ~i~-~~~~~~~~~~~DvVvd~~d~------~~--------~r~~~n~~c~~~~i-p~v~~~~~g~~g 156 (355)
T PRK05597 106 RLT-WSNALDELRDADVILDGSDN------FD--------TRHLASWAAARLGI-PHVWASILGFDA 156 (355)
T ss_pred ecC-HHHHHHHHhCCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEEecCeE
Confidence 654 45566788999999998633 11 11225568888887 599888776664
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=51.08 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|+.-. .... +....-+++.+..
T Consensus 23 ~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 23 KASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred hCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 356899985 589999999999999977888888765 2234443110 0000 0011223444444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+ +.+.+.+.++++|+||.+... ++ ....+-++|.+.++ .+|+.++.+.+|
T Consensus 102 ~i-~~~~~~~~~~~~DlVvd~~D~------~~--------~r~~ln~~~~~~~i-p~v~~~~~g~~G 152 (240)
T TIGR02355 102 KL-DDAELAALIAEHDIVVDCTDN------VE--------VRNQLNRQCFAAKV-PLVSGAAIRMEG 152 (240)
T ss_pred cC-CHHHHHHHhhcCCEEEEcCCC------HH--------HHHHHHHHHHHcCC-CEEEEEecccEe
Confidence 44 345677888999999997633 22 12335578888887 588877665554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.21 Score=52.06 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=73.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+||.|+|+ |.+|+.++-.|+..|. .++.++|+.... ..... -.+.+... ..... +.++ .|. +.++++|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~--~~g~a-~DL~~~~~~~~~~~-i~~~-~dy----~~~~daD 107 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDK--LRGEM-LDLQHAAAFLPRTK-ILAS-TDY----AVTAGSD 107 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCch--hhHHH-HHHHhhhhcCCCCE-EEeC-CCH----HHhCCCC
Confidence 69999996 9999999999988774 379998875421 11100 01111110 11222 2221 122 3478999
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+||-+||.. .+..+.......|+.-.+.+.+..++++-+ .+|.+|
T Consensus 108 iVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 108 LCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999986 234456788899999999999999888654 455555
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=53.67 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=73.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCC-C-CCCeEEEEccCCCHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQI 78 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l-~-~~~~~~~~~Dl~d~~~l 78 (586)
++-||.|+|++|.+|++++-.|...|.. .++++|++.......... -.+.+.. . ..++.. .. .|
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a-~DL~d~a~~~~~~v~i-~~--~~---- 114 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVA-MELEDSLYPLLREVSI-GI--DP---- 114 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHH-HHHHHhhhhhcCceEE-ec--CC----
Confidence 3569999999999999999999987643 244543321100111000 0011100 0 012221 12 12
Q ss_pred HHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEecC
Q 007866 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNST 132 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~SS 132 (586)
.+.++++|+||-+||.. .+..+.....+.|+.-.+.+.....++. .. ++|.+|-
T Consensus 115 y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 115 YEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 45688999999999987 3445678899999999999999998843 33 5666663
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.22 Score=48.82 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CCC----------CCCCCCCCCeEEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NSL----------LPDSLSSGRAEYHQ 69 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~-----~~~----------~~~~l~~~~~~~~~ 69 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.- -+. +......-.++.+.
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 356899985 588999999999999977888888664 223444311 000 00001122344455
Q ss_pred ccCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 70 ~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
..+ +.+.+.+.++++|+||.+.... . .-..+-++|++.++ .+|+.++.+.+|.
T Consensus 105 ~~~-~~~~~~~~l~~~D~Vid~~d~~------~--------~r~~l~~~~~~~~i-p~i~g~~~g~~G~ 157 (231)
T PRK08328 105 GRL-SEENIDEVLKGVDVIVDCLDNF------E--------TRYLLDDYAHKKGI-PLVHGAVEGTYGQ 157 (231)
T ss_pred ccC-CHHHHHHHHhcCCEEEECCCCH------H--------HHHHHHHHHHHcCC-CEEEEeeccCEEE
Confidence 555 4455777889999999976331 1 11234567888886 6899888887764
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.069 Score=54.63 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=71.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEE-EccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYH-QVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~-~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|.|+ |++|..++..|..+|+.+|+++|+.... .+.... .+.+ .......... ..| .+ + +.++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l--~~g~a~-d~~~~~~~~~~~~~i~~t~d---~~---~-~~~a 70 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGI--PQGKAL-DMYEASPVGGFDTKVTGTNN---YA---D-TANS 70 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCCh--hHHHHH-hhhhhhhccCCCcEEEecCC---HH---H-hCCC
Confidence 68999986 9999999999999885479998885431 110000 0000 0000011121 123 22 2 6889
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecC
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS 132 (586)
|.||-+++... ...+.....+.|..-.+.+++...+++-+ .+|.+|-
T Consensus 71 DiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 71 DIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999999763 23345567888999999999988877533 4555553
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=50.23 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-CCC------------CCCCCCCCeEEEEcc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-SLL------------PDSLSSGRAEYHQVD 71 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~-~~~------------~~~l~~~~~~~~~~D 71 (586)
...+|+|.| .|-+|+.++..|...|.-++++.|.+. ..++.|..-. ... ......-+++.+...
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 457899997 599999999999999976799988874 2344444110 000 001112244455555
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVF 137 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg 137 (586)
+.+ +.+.+.++++|+||.+... + .....+.+.|.+. ++ .+|+.|...-|+
T Consensus 106 i~~-~~~~~~~~~~DvVI~a~D~------~--------~~r~~l~~~~~~~~~~-p~I~~~~~~~~~ 156 (212)
T PRK08644 106 IDE-DNIEELFKDCDIVVEAFDN------A--------ETKAMLVETVLEHPGK-KLVAASGMAGYG 156 (212)
T ss_pred cCH-HHHHHHHcCCCEEEECCCC------H--------HHHHHHHHHHHHhCCC-CEEEeehhhccC
Confidence 544 5566788999999998422 2 1223456677777 65 688876555443
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.17 Score=51.60 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG 32 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g 32 (586)
+++|.|.||||.+|+.+++.|.++.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~ 25 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH 25 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC
Confidence 4789999999999999999999963
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.035 Score=56.47 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
+|+||.|.||+||.|..|++.|..+.+.++...
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ 33 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILI 33 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEe
Confidence 368999999999999999999999987776664
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.21 Score=51.06 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=73.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCCC---------CCCCCCCCCeEEEEccCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNSL---------LPDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~-----~~~~---------~~~~l~~~~~~~~~~Dl~ 73 (586)
+|+|.|+ |-+|.++++.|...|.-.++++|.+. ..++.|+- +-+. +.+....-+++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5889975 99999999999999977899988765 22333331 0000 000112234666777777
Q ss_pred CHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 74 d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
+...-.+.++++|+||.+... ...-..+-+.|++.++ .+|..++.+.+|.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~Dn--------------~~ar~~in~~c~~~~i-p~I~~gt~G~~G~ 129 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDN--------------LAARRHVNKMCLAADV-PLIESGTTGFLGQ 129 (312)
T ss_pred CccchHHHHhcCCEEEECCCC--------------HHHHHHHHHHHHHCCC-CEEEEecCcceeE
Confidence 643345678899999987532 2223446678888886 5888888877654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.081 Score=56.52 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=74.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc-------CC-cEEEEecCCcccccCCCCCCCCCCCCC-C-CCCeEEEEccCCCHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL-------GK-CIVRVTDSTQSLQLDPSESNSLLPDSL-S-SGRAEYHQVDVRDISQ 77 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~-------g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l-~-~~~~~~~~~Dl~d~~~ 77 (586)
.-||.|+|++|.+|.+++-.|... |. .++..+|..... ..... -.+.+.. . ..++.+ .. .|
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~--a~G~a-mDL~daa~~~~~~v~i-~~--~~--- 170 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQA--LEGVA-MELEDSLYPLLREVSI-GI--DP--- 170 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcch--hHHHH-HHHHHhhhhhcCceEE-ec--CC---
Confidence 468999999999999999999987 42 257775654321 11000 0111111 0 012221 12 22
Q ss_pred HHHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHh-CCCC-EEEEecC
Q 007866 78 IKKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRE-CKVR-RLVYNST 132 (586)
Q Consensus 78 l~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~-~gvk-r~I~~SS 132 (586)
.+.++++|+||-+||.. .+..+.....+.|+.-.+.+.+...+ ++-. .+|.+|-
T Consensus 171 -ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 171 -YEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred -HHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 35678999999999986 34556788999999999999999998 5543 4565553
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.24 Score=50.86 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+||.|+|+ |.+|+.++..|...|. .++.++|+.... ..... -.+.+... ......... .|.+ .++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~--~~g~a-~Dl~~~~~~~~~~~v~~~--~dy~----~~~~a 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDK--LKGEA-MDLQHGSAFLKNPKIEAD--KDYS----VTANS 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccH--HHHHH-HHHHHhhccCCCCEEEEC--CCHH----HhCCC
Confidence 469999996 9999999999988764 369998875421 11100 01111110 011122221 1332 47899
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+||... +..+.....+.|..-.+.+.+..++++-+ .+|.+|
T Consensus 73 divvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 73 KVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 99999999863 33456778899999999999999988644 455555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=50.40 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=71.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcC--C-cEEEEecCCcccccCCCCCCCCCCCCCCCC-CeEEEEccCCCHHHHHHHhcCCC
Q 007866 11 CVVLNGRGFVGRSLVLRLLELG--K-CIVRVTDSTQSLQLDPSESNSLLPDSLSSG-RAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g--~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~-~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|.|+||+|.+|..++..|+..| . .++.++|+.... +..... .+.+..... ..+.... +++.+.++++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~-l~~~~~--dl~~~~~~~~~~~i~~~-----~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEK-LKGVAM--DLQDAVEPLADIKVSIT-----DDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCccc-chHHHH--HHHHhhhhccCcEEEEC-----CchHHHhCCCC
Confidence 5789999999999999999887 2 389998876521 111000 111111110 1122211 12356789999
Q ss_pred EEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
.||-+++... ...........|+.-.+.+++..++.+-+ .+|..|
T Consensus 73 iVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 73 VVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999998862 33345667888999999999999887644 344443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.16 Score=53.63 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCCC--------------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNS--------------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~~--------------~~~~~l~~~~~~~~~~ 70 (586)
...+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|+.-.. .+.+....-+++.+..
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4578999955 88999999999999976899988873 22344432100 0000011123344444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+. .+.+.+.++++|+||++... +. .-..+-++|++.++ .+|+.+..+.+|
T Consensus 213 ~~~-~~~~~~~~~~~D~Vv~~~d~------~~--------~r~~ln~~~~~~~i-p~i~~~~~g~~g 263 (376)
T PRK08762 213 RVT-SDNVEALLQDVDVVVDGADN------FP--------TRYLLNDACVKLGK-PLVYGAVFRFEG 263 (376)
T ss_pred cCC-hHHHHHHHhCCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEeccCEE
Confidence 443 45667788999999998643 21 11235678888886 688887665543
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.14 Score=52.05 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
-+|.|.||+||.|..|++.|.++++.++..+ ..... .+-.+ ..++++++|+|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l--------~s~~~-----------------~~~~~---~~~~~~~~D~v 53 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSI--------APDRR-----------------KDAAE---RAKLLNAADVA 53 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEE--------ecccc-----------------cCcCC---HhHhhcCCCEE
Confidence 4799999999999999999999986566652 11110 01112 23456789999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|-+.... .+..++..+.+.|+ ++|=.|+..
T Consensus 54 Flalp~~---------------~s~~~~~~~~~~g~-~VIDlSadf 83 (310)
T TIGR01851 54 ILCLPDD---------------AAREAVSLVDNPNT-CIIDASTAY 83 (310)
T ss_pred EECCCHH---------------HHHHHHHHHHhCCC-EEEECChHH
Confidence 9876331 13345555556676 577777654
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.053 Score=62.34 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=107.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCCCCCCeEE--EEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSLSSGRAEY--HQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l~~~~~~~--~~~Dl~d~~~l~~~ 81 (586)
.+..+|+||-|-.|-.|++.|..+|...++. ..|+.-+. ..-......++.. -.-|+...+.-.++
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVL--------tSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~L 1839 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVL--------TSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGL 1839 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEE--------eccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHH
Confidence 4789999999999999999999999644555 34433211 1111112223333 33456555555566
Q ss_pred hcC------CCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCC
Q 007866 82 LEG------ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 82 l~~------~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++. +-.|||+|+.. ....+++..-+.-+.||.||=.+.++. -.+-||..||.+. |-|
T Consensus 1840 i~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-GRG------- 1911 (2376)
T KOG1202|consen 1840 IEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-GRG------- 1911 (2376)
T ss_pred HHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-cCC-------
Confidence 653 57899999975 224455666667778899998888876 3678999998865 221
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v 190 (586)
...++-||.+-...|+++++-.. +|+|-+.+.-|.|
T Consensus 1912 -------N~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1912 -------NAGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred -------CCcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 24467899999999999987544 6888777765544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.11 Score=56.28 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
.+++|+|.|+ |.+|+.+++.|.+.|+ +|+++|.+... .. .+.. ...++..+.+|..+.+.+.++ ++++
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~-~v~vid~~~~~--~~-----~~~~--~~~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGY-SVKLIERDPER--AE-----ELAE--ELPNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHHH--HH-----HHHH--HCCCCeEEECCCCCHHHHHhcCCccC
Confidence 4689999987 9999999999999995 89996655320 00 0000 013577899999999988654 4789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||-+... + +.|.. +...|++.+.++++......
T Consensus 299 ~~vi~~~~~-----~-----~~n~~----~~~~~~~~~~~~ii~~~~~~ 333 (453)
T PRK09496 299 DAFIALTND-----D-----EANIL----SSLLAKRLGAKKVIALVNRP 333 (453)
T ss_pred CEEEECCCC-----c-----HHHHH----HHHHHHHhCCCeEEEEECCc
Confidence 999855422 1 23443 23355666777777655443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=47.28 Aligned_cols=111 Identities=9% Similarity=0.027 Sum_probs=67.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCCC-CC------------CCCCCCCCeEEEEccCCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNS-LL------------PDSLSSGRAEYHQVDVRD 74 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~~-~~------------~~~l~~~~~~~~~~Dl~d 74 (586)
+|+|.| .|-+|++++..|.+.|..++++.|.+. ..++.|..... .. .+....-+++.+...+.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 578887 599999999999999966799988875 12344432100 00 001112244455555543
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccc
Q 007866 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVF 137 (586)
Q Consensus 75 ~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg 137 (586)
+.+.+.++++|+||.+... ++ .-..+.+.+.+. ++ .+|+.+...-||
T Consensus 80 -~~~~~~l~~~DlVi~~~d~------~~--------~r~~i~~~~~~~~~i-p~i~~~~~~~~~ 127 (174)
T cd01487 80 -NNLEGLFGDCDIVVEAFDN------AE--------TKAMLAESLLGNKNK-PVVCASGMAGFG 127 (174)
T ss_pred -hhHHHHhcCCCEEEECCCC------HH--------HHHHHHHHHHHHCCC-CEEEEehhhccC
Confidence 5567788999999998422 11 112355666665 65 577776554443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.13 Score=54.26 Aligned_cols=68 Identities=26% Similarity=0.379 Sum_probs=51.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|++|+|.|| |.+|+-++..+.+.| ++|.++|.... .+. .. ---..+.+|..|.+.+.++.+.+|+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG-~~v~~~d~~~~-----~pa-----~~---~ad~~~~~~~~D~~~l~~~a~~~dv 66 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLG-YKVIVLDPDPD-----SPA-----AQ---VADEVIVADYDDVAALRELAEQCDV 66 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCCCC-----Cch-----hH---hCceEEecCCCCHHHHHHHHhcCCE
Confidence 578999987 899999999999999 59999665321 000 00 0124667899999999999999998
Q ss_pred EEE
Q 007866 88 VFY 90 (586)
Q Consensus 88 Vih 90 (586)
|..
T Consensus 67 it~ 69 (372)
T PRK06019 67 ITY 69 (372)
T ss_pred EEe
Confidence 753
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.38 Score=54.77 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCc--ccccCCCCCC-CCC------------CCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQ--SLQLDPSESN-SLL------------PDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~--~~~l~r~~~~-~~~------------~~~l~~~~~~~~~~ 70 (586)
...+|+|.|. | +|++++..|...|. -+++++|.+. ..|+.|.... ... ......-+++.+..
T Consensus 106 ~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 106 GRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred hcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3578999999 8 99999999999983 4788888765 3355553110 000 00112235666666
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
.+. .+.+.++++++|+||.|.-. + ..-..+-++|.+.|+ .+|+.|+.
T Consensus 184 ~i~-~~n~~~~l~~~DlVvD~~D~------~--------~~R~~ln~~a~~~~i-P~i~~~~~ 230 (722)
T PRK07877 184 GLT-EDNVDAFLDGLDVVVEECDS------L--------DVKVLLREAARARRI-PVLMATSD 230 (722)
T ss_pred cCC-HHHHHHHhcCCCEEEECCCC------H--------HHHHHHHHHHHHcCC-CEEEEcCC
Confidence 665 67788999999999998632 1 112234568888887 57777753
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.18 Score=51.58 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=71.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCC-CCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~-~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|.|.|+ |++|..++..|+..|. .++.++|+..+. .... ...+.+.... .......+ .| .+.++++|+|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~--~~g~-~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiV 70 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEK--AKGD-ALDLSHASAFLATGTIVRG--GD----YADAADADIV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccH--HHHH-HHhHHHhccccCCCeEEEC--CC----HHHhCCCCEE
Confidence 457775 8999999999998883 379998876431 1100 0011111111 12222221 22 2468899999
Q ss_pred EEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|.+++.. .+..+.......|+.-.+.+.+..++++-+ .+|.+|
T Consensus 71 Iitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 71 VITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9999986 234466788889999999999999988644 455554
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.13 Score=54.38 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.+++|.|.||.|.+|..++..|.++|+ .|+++|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeC
Confidence 458999999999999999999999995 899954
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.74 Score=46.30 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.-. .... +....-+++.+..
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 356899995 588999999999999977899888774 3345554210 0010 0112224455555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
.+. .+...++++++|+||.+... + +...-..+-++|++.++ .+|+.|...-.
T Consensus 105 ~l~-~~n~~~ll~~~DlVvD~~D~------~------~~~~r~~ln~~c~~~~i-P~V~~~~~g~~ 156 (287)
T PRK08223 105 GIG-KENADAFLDGVDVYVDGLDF------F------EFDARRLVFAACQQRGI-PALTAAPLGMG 156 (287)
T ss_pred ccC-ccCHHHHHhCCCEEEECCCC------C------cHHHHHHHHHHHHHcCC-CEEEEeccCCe
Confidence 554 34567788999999976522 1 01112345678899986 68887765544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.22 Score=44.05 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++|++.| +| -|.+++..|.+.|+ +|++.|+.+. ..+ ......++.+.+|+.+++ .+.-+++|
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~-~ViaIDi~~~----aV~-------~a~~~~~~~v~dDlf~p~--~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGF-DVIVIDINEK----AVE-------KAKKLGLNAFVDDLFNPN--LEIYKNAK 79 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCC-EEEEEECCHH----HHH-------HHHHhCCeEEECcCCCCC--HHHHhcCC
Confidence 357899996 56 89999999999995 9999888753 100 011235789999999877 55668899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
.|+-+= .|.+. ...+++.|++.++.-+|.
T Consensus 80 liysir-------pp~el-------~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 80 LIYSIR-------PPRDL-------QPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEEeC-------CCHHH-------HHHHHHHHHHcCCCEEEE
Confidence 998653 22222 345889999999865553
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.045 Score=49.77 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|+|+ |.+|+.+++.|.+.|.++|.++|+.. ++. .+...+ +...+..+..+. .+.+++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~--------~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~ 81 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTL--------EKAKALAERF---GELGIAIAYLDL---EELLAE 81 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH--------HHHHHHHHHH---hhcccceeecch---hhcccc
Confidence 34689999987 99999999999998634898855432 210 000001 111011233333 334788
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||.+....
T Consensus 82 ~Dvvi~~~~~~ 92 (155)
T cd01065 82 ADLIINTTPVG 92 (155)
T ss_pred CCEEEeCcCCC
Confidence 99999998775
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.31 Score=51.21 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCC------------CCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLL------------PDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~------------~~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.-- ... .+....-+++.+..
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 456899995 588999999999999966899988774 3345554210 000 01111224555555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+. .+.+.++++++|+||.|... + ..-..+-++|.+.++ .+|+.+..+-+|
T Consensus 119 ~i~-~~~~~~~~~~~DlVid~~Dn------~--------~~r~~in~~~~~~~i-P~v~~~~~g~~G 169 (370)
T PRK05600 119 RLT-AENAVELLNGVDLVLDGSDS------F--------ATKFLVADAAEITGT-PLVWGTVLRFHG 169 (370)
T ss_pred ecC-HHHHHHHHhCCCEEEECCCC------H--------HHHHHHHHHHHHcCC-CEEEEEEecCEE
Confidence 554 45667889999999998643 2 122234567888886 588887766654
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.41 Score=50.87 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.- ..... +....-+++.+..
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 356899995 588999999999999976888888764 234444321 00010 0011123444555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
.+. .+...+.++++|+||.+... +. .-..+-++|.+.++ .+|+.++.+.+|.
T Consensus 120 ~i~-~~~~~~~~~~~D~Vvd~~d~------~~--------~r~~ln~~~~~~~~-p~v~~~~~g~~G~ 171 (392)
T PRK07878 120 RLD-PSNAVELFSQYDLILDGTDN------FA--------TRYLVNDAAVLAGK-PYVWGSIYRFEGQ 171 (392)
T ss_pred cCC-hhHHHHHHhcCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEeccCEEE
Confidence 654 34567788999999987532 21 12235568888886 5999988887763
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.65 Score=45.92 Aligned_cols=94 Identities=27% Similarity=0.306 Sum_probs=64.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~-~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
|+|||.|||+ =|+.+++.|.++|. |.+ +-.. ... .... ......+...+-+.|.+++.+.++ ++
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~--v~~sv~t~----~g~-----~~~~-~~~~~~~v~~G~lg~~~~l~~~l~~~~i 67 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY--VIVSVATS----YGG-----ELLK-PELPGLEVRVGRLGDEEGLAEFLRENGI 67 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC--EEEEEEhh----hhH-----hhhc-cccCCceEEECCCCCHHHHHHHHHhCCC
Confidence 7999999986 59999999999994 332 1000 011 0100 012356788888889999999995 69
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEE
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~ 127 (586)
+.||+..-+ +. .+-+.|+.++|++.|+.-+
T Consensus 68 ~~vIDATHP------fA------~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 68 DAVIDATHP------FA------AEISQNAIEACRELGIPYL 97 (249)
T ss_pred cEEEECCCc------hH------HHHHHHHHHHHhhcCcceE
Confidence 999996533 22 2346789999999998633
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.47 Score=51.56 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=93.0
Q ss_pred CCeEEEEcCC-CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGR-GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGat-G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+..+||||+ |.||..+++.|+.-|. +|++....... .|.+....+. +.-.....-.+..+......++.+++
T Consensus 396 d~valVTGA~~gSIaa~Vv~~LL~gGA-tVI~TTS~~s~--~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIew 472 (866)
T COG4982 396 DKVALVTGASKGSIAAAVVARLLAGGA-TVIATTSRLSE--ERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEW 472 (866)
T ss_pred cceEEEecCCCcchHHHHHHHHHhCCc-EEEEEcccccH--HHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHH
Confidence 4679999976 7899999999999995 88885443210 0100000000 00011223445555555444444432
Q ss_pred --------------------CCCEEEEcccCCC----CCCCh--hHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 84 --------------------GASTVFYVDATDL----NTDDF--YNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 84 --------------------~~D~Vih~aa~~~----~~~~~--~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
..|.+|-+|++.- ...++ +...++-.....+++-..+..|-.|=|= +-..|.-
T Consensus 473 Ig~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~-~R~hVVL 551 (866)
T COG4982 473 IGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVD-TRLHVVL 551 (866)
T ss_pred hccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcc-cceEEEe
Confidence 1478888888861 12222 3333444445556666555554221010 0011221
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC----ceEEEEeCCCcccCC
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG----LLTCALRPSNVFGPG 194 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~g----l~~~ilRp~~v~G~~ 194 (586)
+++++.. .......||.+|...|.++..++.+.+ +..|.-++|.+-|-+
T Consensus 552 PgSPNrG--------~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 552 PGSPNRG--------MFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred cCCCCCC--------ccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 2222111 123456899999999999999877653 345555555555544
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.62 Score=45.64 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=72.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCCC---------CCCCCCCCCeEEEEccCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNSL---------LPDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~-----~~~~---------~~~~l~~~~~~~~~~Dl~ 73 (586)
+|+|.| .|-+|.++++.|...|.-+++++|.+. ..++.|+- +-+. +.+....-+++.+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 578886 689999999999999976788888765 23444431 1000 001112234666777775
Q ss_pred CHHHH-HHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 74 DISQI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 74 d~~~l-~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
+.+.+ .+.++++|+||.+... ...-+.+-+.|.+.++ .+|..++.+-+|.
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn--------------~~aR~~ln~~c~~~~i-plI~~g~~G~~G~ 130 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDN--------------IIARRYVNGMLIFLIV-PLIESGTEGFKGN 130 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEcccCCceE
Confidence 54333 4567899999987422 2334456678888886 6888888776653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.91 Score=43.36 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC-CCCC------------CCCCCCCeEEEEcc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN-SLLP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~-~~~~------------~~l~~~~~~~~~~D 71 (586)
..++|+|.|+ |-+|+.++..|.+.|.-+++++|.+. ..++.|.... .... ......+++.+..+
T Consensus 20 ~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 20 EQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred hCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 4578999976 77999999999999965799999882 2345553210 0010 00111245555566
Q ss_pred CCCHHHHHHHhcCCCEEEEc
Q 007866 72 VRDISQIKKVLEGASTVFYV 91 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~ 91 (586)
+. .+.+.++++++|+||.+
T Consensus 99 i~-~~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 99 IT-EENIDKFFKDADIVCEA 117 (200)
T ss_pred CC-HhHHHHHhcCCCEEEEC
Confidence 64 46678889999999997
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.2 Score=46.45 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|+.+.+|..+++.|.++|. +|++ ..|. .+++.+.+.++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v--------~~r~------------------------~~~l~~~l~~a 88 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTV--------CHSK------------------------TKNLKEHTKQA 88 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEE--------EECC------------------------chhHHHHHhhC
Confidence 4679999999977899999999999995 7887 3332 13556788899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||.+.+..
T Consensus 89 DiVIsat~~~ 98 (168)
T cd01080 89 DIVIVAVGKP 98 (168)
T ss_pred CEEEEcCCCC
Confidence 9999988764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.61 Score=46.57 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=66.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--C------------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--S------------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~------------~~~~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+++++.|.+.|.-+++++|.+. ..++.|.-.. . .+.+.....++..+.
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~- 106 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD- 106 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe-
Confidence 457899995 589999999999999966888888764 2233332210 0 000001111233332
Q ss_pred cCCCHHHHHHHhc-CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 71 DVRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 71 Dl~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
+..+++.+.+.+. ++|+||.+.... ..-..+.+.|++.++ .+|.+..+
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~~--------------~~k~~L~~~c~~~~i-p~I~~gGa 155 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDSV--------------RPKAALIAYCRRNKI-PLVTTGGA 155 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHcCC-CEEEECCc
Confidence 3334566667774 699999986432 123357888999887 56655444
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.57 Score=50.07 Aligned_cols=116 Identities=10% Similarity=0.066 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCC-----CCCCC---------CCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPS-----ESNSL---------LPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~-----~~~~~---------~~~~l~~~~~~~~~~ 70 (586)
...+|+|.|++| +|..+++.|...|--.++++|.+. ..++.|. .+-+. +.+....-+++++..
T Consensus 19 ~~s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e 97 (425)
T cd01493 19 ESAHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE 97 (425)
T ss_pred hhCeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec
Confidence 356899998665 999999999999976789988763 1122221 00000 001111123345554
Q ss_pred cCCCH-HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 71 DVRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 71 Dl~d~-~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
++.+. +.-.+.+.++|+||-+.. +.. ....+.+.|++.++ .+|+++|.+.||.
T Consensus 98 ~~~~ll~~~~~f~~~fdiVI~t~~------~~~--------~~~~L~~~c~~~~i-PlI~~~s~G~~G~ 151 (425)
T cd01493 98 SPEALLDNDPSFFSQFTVVIATNL------PES--------TLLRLADVLWSANI-PLLYVRSYGLYGY 151 (425)
T ss_pred ccchhhhhHHHHhcCCCEEEECCC------CHH--------HHHHHHHHHHHcCC-CEEEEecccCEEE
Confidence 44331 122456788999985321 111 12346688888887 6999999999974
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.26 Score=42.28 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=50.0
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCEEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGASTVF 89 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~Vi 89 (586)
|+|.|. |-+|+.+++.|.+.+ +.|+++|..+.. . ..+...++..+.+|..|++.+.++ +++++.|+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~d~~~--~---------~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDRDPER--V---------EELREEGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHH--H---------HHHHHTTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEECCcHH--H---------HHHHhcccccccccchhhhHHhhcCccccCEEE
Confidence 567765 799999999999966 589997665421 0 111223578999999999998874 57889888
Q ss_pred Eccc
Q 007866 90 YVDA 93 (586)
Q Consensus 90 h~aa 93 (586)
=+..
T Consensus 68 ~~~~ 71 (116)
T PF02254_consen 68 ILTD 71 (116)
T ss_dssp EESS
T ss_pred EccC
Confidence 7653
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.42 Score=48.83 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=67.4
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|.|.|+ |.+|..++..|...|..+|+++|+.... .+.... .+.+.. ........ .. .|. +.++++|+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~--~~g~~~-dl~~~~~~~~~~~~I~-~t-~d~----~~l~dADiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGL--PQGKAL-DISQAAPILGSDTKVT-GT-NDY----EDIAGSDVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcH--HHHHHH-HHHHhhhhcCCCeEEE-Ec-CCH----HHhCCCCEE
Confidence 468888 9999999999988873389998887532 110000 000110 01112221 11 122 347899999
Q ss_pred EEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 89 FYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 89 ih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|.+++... ...+.......|..-.+.+++...+..-+ .+|.+|
T Consensus 71 Iit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 71 VITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99998762 33334456677888888888888887644 345554
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.42 Score=55.56 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|+.-. .... +....-+++.+..
T Consensus 331 ~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 331 LRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred hcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 357899997 688999999999999976788888765 2344453210 0000 0111224555555
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
.+ +.+.+.+.++++|+||.+.... ....-+.+.+.|.+.|+ .+|+.++.+-+
T Consensus 410 ~I-~~en~~~fl~~~DiVVDa~D~~------------~~~~rr~l~~~c~~~~I-P~I~ag~~G~~ 461 (989)
T PRK14852 410 GV-AAETIDAFLKDVDLLVDGIDFF------------ALDIRRRLFNRALELGI-PVITAGPLGYS 461 (989)
T ss_pred CC-CHHHHHHHhhCCCEEEECCCCc------------cHHHHHHHHHHHHHcCC-CEEEeeccccC
Confidence 55 5567788899999999876332 01122456778888887 58887775544
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.54 Score=45.98 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|+++++.|.+.|.-+++++|.+. ..++.|.... .... +....-+++.+..
T Consensus 10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 357899995 689999999999999977899988765 2233333110 0000 0011123444444
Q ss_pred cCCCHHHHHHHhc-CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 71 DVRDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 71 Dl~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
.+. ++.+.+.+. ++|+||.+... ...-..+.+.|++.++ .+|.+.+.
T Consensus 89 ~i~-~~~~~~l~~~~~D~VvdaiD~--------------~~~k~~L~~~c~~~~i-p~I~s~g~ 136 (231)
T cd00755 89 FLT-PDNSEDLLGGDPDFVVDAIDS--------------IRAKVALIAYCRKRKI-PVISSMGA 136 (231)
T ss_pred ecC-HhHHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHhCC-CEEEEeCC
Confidence 443 455566664 69999998533 1223457789999886 46655443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.22 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
+|+|.|. |.|++|..++..|.++|| +|+++|+.+
T Consensus 3 ~~kI~VI-GlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVI-GLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred ccEEEEE-CcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 5789999 569999999999999995 999988765
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.8 Score=41.40 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~ 85 (586)
..+|+|-|-||.+|+.+.+.|+..|-..|.+ . ....... . ...+.-..++.++-+. +
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~--V------~p~~~~~---------~----v~G~~~y~sv~dlp~~~~~ 64 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGG--V------TPGKGGT---------T----VLGLPVFDSVKEAVEETGA 64 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEE--E------CCCCCcc---------e----ecCeeccCCHHHHhhccCC
Confidence 4689999999999999999999988433333 1 1111000 0 1122233444444444 7
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
|.++-+... .....+++.|.+.|++..|.+|+.
T Consensus 65 Dlavi~vpa---------------~~v~~~l~e~~~~Gvk~avIis~G 97 (286)
T TIGR01019 65 NASVIFVPA---------------PFAADAIFEAIDAGIELIVCITEG 97 (286)
T ss_pred CEEEEecCH---------------HHHHHHHHHHHHCCCCEEEEECCC
Confidence 888876533 123447778888899998888875
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.56 Score=53.16 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~------------~~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..|+.|+.- .... .+.....+++.+..
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 357899996 789999999999999976788887664 334555321 0001 01112235666777
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
.+. .+.+.+.++++|+||.+.... . ...-..+.+.|++.++. +|+.+.
T Consensus 121 ~i~-~~n~~~~l~~~DvVid~~D~~----~--------~~~r~~l~~~c~~~~iP-~i~~g~ 168 (679)
T PRK14851 121 GIN-ADNMDAFLDGVDVVLDGLDFF----Q--------FEIRRTLFNMAREKGIP-VITAGP 168 (679)
T ss_pred CCC-hHHHHHHHhCCCEEEECCCCC----c--------HHHHHHHHHHHHHCCCC-EEEeec
Confidence 775 566788899999999876321 0 11123466788888874 676553
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.067 Score=47.68 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++++|.|+ |-.|+.++..|.+.|..+|+++ .|+.++. .+.+.+....++.+ ++. ++.+.+.+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~--------nRt~~ra~~l~~~~~~~~~~~~--~~~---~~~~~~~~ 75 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIV--------NRTPERAEALAEEFGGVNIEAI--PLE---DLEEALQE 75 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEE--------ESSHHHHHHHHHHHTGCSEEEE--EGG---GHCHHHHT
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEE--------ECCHHHHHHHHHHcCcccccee--eHH---HHHHHHhh
Confidence 45789999987 8899999999999997669994 4443311 11111111233333 332 33467788
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||++.+..
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998765
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.2 Score=52.08 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..++.|||.||+|-+|+..++.....|...|.+ .++.++.++...+. .-...|..+++..++..+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t---------~~s~e~~~l~k~lG----Ad~vvdy~~~~~~e~~kk~~ 222 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVT---------ACSKEKLELVKKLG----ADEVVDYKDENVVELIKKYT 222 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEE---------EcccchHHHHHHcC----CcEeecCCCHHHHHHHHhhc
Confidence 357899999999999999999999988324555 33333222222221 123457777555554444
Q ss_pred --CCCEEEEcccCC
Q 007866 84 --GASTVFYVDATD 95 (586)
Q Consensus 84 --~~D~Vih~aa~~ 95 (586)
++|+|++|.+..
T Consensus 223 ~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGS 236 (347)
T ss_pred CCCccEEEECCCCC
Confidence 599999999985
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.33 Score=50.52 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=56.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcE---EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCI---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~---V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|.||||.+|+.+++.|.+..++. ++.+... |+..+ . ..+. +.....-++.+. +.+.++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~------~s~g~--~-~~f~--~~~~~v~~~~~~----~~~~~v 65 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS------QLGQA--A-PSFG--GTTGTLQDAFDI----DALKAL 65 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch------hhCCC--c-CCCC--CCcceEEcCccc----ccccCC
Confidence 479999999999999999999443243 4442221 11111 0 1111 112233344332 245789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
|+|+.+++.. -++.+...++++|.. .+|=.||..
T Consensus 66 Divffa~g~~---------------~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 66 DIIITCQGGD---------------YTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred CEEEEcCCHH---------------HHHHHHHHHHhCCCCeEEEECChhh
Confidence 9999988652 245577788888853 455555553
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.46 Score=49.43 Aligned_cols=102 Identities=9% Similarity=0.019 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC-Ccccc--cCC-CCCC--CCCCCC---CCCCCeEEEEccCCCHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS-TQSLQ--LDP-SESN--SLLPDS---LSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~-~~~~~--l~r-~~~~--~~~~~~---l~~~~~~~~~~Dl~d~~~l 78 (586)
|+||.|.|. |-+|+.+++.+.+....++.++.- ..... +.. ...+ ...... +...++ .+..| .
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i-~V~~~------~ 72 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGI-PVAGT------I 72 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCce-EEcCC------h
Confidence 478999998 999999999998876567665321 11000 000 0000 000000 000011 11122 3
Q ss_pred HHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 79 KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
.++++++|+||.+++.. .+...++.+.++| +++|+.|+.
T Consensus 73 ~el~~~vDVVIdaT~~~---------------~~~e~a~~~~~aG-k~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGG---------------VGAKNKELYEKAG-VKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCch---------------hhHHHHHHHHHCC-CEEEEcCCC
Confidence 44567899999998653 1234567788889 678888775
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.4 Score=49.29 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+++|.|.|| |.+|+-++.+-.+.| +.|+++|.... .+. ..-.-..+.++..|.+.+.++.+++|+
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG-~~v~vLdp~~~-----~PA--------~~va~~~i~~~~dD~~al~ela~~~DV 65 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLG-IKVIVLDPDAD-----APA--------AQVADRVIVAAYDDPEALRELAAKCDV 65 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcC-CEEEEecCCCC-----Cch--------hhcccceeecCCCCHHHHHHHHhhCCE
Confidence 478999965 999999999999999 59999664431 010 011235677888899999999999998
Q ss_pred EEE
Q 007866 88 VFY 90 (586)
Q Consensus 88 Vih 90 (586)
|=.
T Consensus 66 iT~ 68 (375)
T COG0026 66 ITY 68 (375)
T ss_pred EEE
Confidence 854
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.77 E-value=6 Score=40.09 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
+..+|+|-|-||-+|+.+.+.|++.|...++. ..+..... . ...+....++.++-+.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~p--------Vnp~~~~~---------~----v~G~~~y~sv~dlp~~~~ 65 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGG--------VTPGKGGT---------T----VLGLPVFNTVAEAVEATG 65 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEE--------ECCCCCCC---------e----EeCeeccCCHHHHhhccC
Confidence 45789999999999999999999987324444 22221000 0 1122223334444444
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
+|.++-+... .....+++.|.+.|+|..|.+|+.
T Consensus 66 ~DlAvi~vp~---------------~~v~~~l~e~~~~gvk~avI~s~G 99 (291)
T PRK05678 66 ANASVIYVPP---------------PFAADAILEAIDAGIDLIVCITEG 99 (291)
T ss_pred CCEEEEEcCH---------------HHHHHHHHHHHHCCCCEEEEECCC
Confidence 7888775432 223457788888999988888875
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.2 Score=43.45 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
+|+|+|.|||+- ++.|++.|...+. .+.+... ..+... +..+......+-..+.+.+.+.++ ++
T Consensus 2 ~~~ilvlGGT~D-ar~la~~L~~~~~-~~~~ss~-----t~~g~~-------l~~~~~~~~~~G~l~~e~l~~~l~e~~i 67 (257)
T COG2099 2 MMRILLLGGTSD-ARALAKKLAAAPV-DIILSSL-----TGYGAK-------LAEQIGPVRVGGFLGAEGLAAFLREEGI 67 (257)
T ss_pred CceEEEEeccHH-HHHHHHHhhccCc-cEEEEEc-----cccccc-------chhccCCeeecCcCCHHHHHHHHHHcCC
Confidence 578999999874 8999999999884 3333111 122211 111223366777788999999985 69
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
|.||+..-+ +. .+-+.|.+++|++.|+..+-
T Consensus 68 ~llIDATHP------yA------a~iS~Na~~aake~gipy~r 98 (257)
T COG2099 68 DLLIDATHP------YA------ARISQNAARAAKETGIPYLR 98 (257)
T ss_pred CEEEECCCh------HH------HHHHHHHHHHHHHhCCcEEE
Confidence 999985432 22 34478899999999996444
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.42 Score=51.55 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEE
Q 007866 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (586)
Q Consensus 5 ~~~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~ 68 (586)
+..+++||||+| ||-.|..|++++..+|. +|++ +....+ +. .+.+++.+
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~Vtl--------I~Gp~~---~~---~p~~v~~i 317 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTL--------ISGPVD---LA---DPQGVKVI 317 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEE--------EeCCcC---CC---CCCCceEE
Confidence 357899999976 79999999999999995 8877 332211 10 22355655
Q ss_pred EccCCCHHHHHHHhc---CCCEEEEcccCC
Q 007866 69 QVDVRDISQIKKVLE---GASTVFYVDATD 95 (586)
Q Consensus 69 ~~Dl~d~~~l~~~l~---~~D~Vih~aa~~ 95 (586)
.+ .+.+++.++++ .+|++|+.||..
T Consensus 318 ~V--~ta~eM~~av~~~~~~Di~I~aAAVa 345 (475)
T PRK13982 318 HV--ESARQMLAAVEAALPADIAIFAAAVA 345 (475)
T ss_pred Ee--cCHHHHHHHHHhhCCCCEEEEecccc
Confidence 44 34555544443 379999999987
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.33 Score=48.99 Aligned_cols=56 Identities=13% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|++|.+|+.++..|+++|. +|+++ .|. ...+.+.++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~--------~~~------------------------t~~L~~~~~~a 203 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTIC--------HSR------------------------TQNLPELVKQA 203 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEE--------eCC------------------------chhHHHHhccC
Confidence 4678999999999999999999999995 88883 221 12355666889
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||++.|.
T Consensus 204 DIvI~AtG~ 212 (283)
T PRK14192 204 DIIVGAVGK 212 (283)
T ss_pred CEEEEccCC
Confidence 999999864
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=92.35 E-value=4 Score=44.21 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=56.9
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGat---G~IG~~lv~~L~~~g~~--~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+++|.|.|++ |-+|..+++.|++.| + .|+.+ .+... . ..++.-..++.++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~V--------np~~~--~-------------i~G~~~~~sl~~l 61 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPV--------NPKAG--E-------------ILGVKAYPSVLEI 61 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEE--------CCCCC--c-------------cCCccccCCHHHC
Confidence 46899999998 678999999999988 4 57763 22111 0 0011222333333
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
-+.+|.++-+... ..+..+++.|.+.|++.+|.+||.
T Consensus 62 p~~~Dlavi~vp~---------------~~~~~~l~e~~~~gv~~~vi~s~g 98 (447)
T TIGR02717 62 PDPVDLAVIVVPA---------------KYVPQVVEECGEKGVKGAVVITAG 98 (447)
T ss_pred CCCCCEEEEecCH---------------HHHHHHHHHHHhcCCCEEEEECCC
Confidence 3567888765432 224457888888999999888875
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.3 Score=46.29 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC---CCCCCC----------CC--CCCCeEEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES---NSLLPD----------SL--SSGRAEYHQ 69 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~---~~~~~~----------~l--~~~~~~~~~ 69 (586)
...+|+|.| .|-+|++++..|.+.|.-+++++|-+. ..++.|... ...... .+ ...++..+.
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 356899995 588999999999999977899988774 445666641 111111 00 123455555
Q ss_pred ccCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 70 ~Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
..+ +++.+. .+.++|+||.|... ..+-..+.++|.+.++. +|.++
T Consensus 254 ~~I-~~~n~~-~L~~~DiV~dcvDn--------------~~aR~~ln~~a~~~gIP-~Id~G 298 (393)
T PRK06153 254 EYI-DEDNVD-ELDGFTFVFVCVDK--------------GSSRKLIVDYLEALGIP-FIDVG 298 (393)
T ss_pred ecC-CHHHHH-HhcCCCEEEEcCCC--------------HHHHHHHHHHHHHcCCC-EEEee
Confidence 555 555554 67899999998743 22233456788888873 66544
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.69 Score=43.53 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhc
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLE 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~ 83 (586)
+..+++|+|.|.+.-+|+.++..|+++| .+|+.+|+..-+...+... .........| ...+.+.++
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~-AtVti~~~~~~~~~~~~~~------------~~hs~t~~~~~~~~l~~~~~ 125 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDG-ARVYSVDINGIQVFTRGES------------IRHEKHHVTDEEAMTLDCLS 125 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCC-CEEEEEecCcccccccccc------------cccccccccchhhHHHHHhh
Confidence 3568999999999999999999999999 5999977544211111111 1111111123 234677888
Q ss_pred CCCEEEEcccCC
Q 007866 84 GASTVFYVDATD 95 (586)
Q Consensus 84 ~~D~Vih~aa~~ 95 (586)
.+|+||-..|..
T Consensus 126 ~ADIVIsAvG~~ 137 (197)
T cd01079 126 QSDVVITGVPSP 137 (197)
T ss_pred hCCEEEEccCCC
Confidence 999999988875
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.47 Score=51.37 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-CC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-~~ 85 (586)
.+++|+|||++| +|...++.|.+.| ++|.+.|.... ...+. ...+...+++...++-. .. .+. ++
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~---~~~~~----~~~l~~~g~~~~~~~~~--~~---~~~~~~ 69 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPF---SENPE----AQELLEEGIKVICGSHP--LE---LLDEDF 69 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCc---cchhH----HHHHHhcCCEEEeCCCC--HH---HhcCcC
Confidence 468999999988 9999999999999 59999775431 11110 01122234555444321 11 233 48
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|.||..+|..
T Consensus 70 d~vV~s~gi~ 79 (447)
T PRK02472 70 DLMVKNPGIP 79 (447)
T ss_pred CEEEECCCCC
Confidence 9999998875
|
|
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.5 Score=48.57 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=87.1
Q ss_pred cccceeeeccccCcchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccccccCCCC-----CCCCCCc-e
Q 007866 382 GKVADILLWKDEKKTFTYFLVLVLLFYWFFLGGSTLTSSAAKFLLLLSAVLFGYGILPSNIFGFNV-----KRISPSC-F 455 (586)
Q Consensus 382 g~~~~~~~w~~~~~s~~~~~~~~~~~~l~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~ 455 (586)
...-.+..|+||.+|.++++..+.+ ..-.|.+|.|-++ |+.+++..+|... ..-.++++ +..|+++ +
T Consensus 504 ~~~~~l~~We~P~kt~~Fl~~~~~i-I~r~wl~Y~~p~~-----Ll~~a~~Ml~~r~-~~~~g~~~~~v~V~~pP~~nTv 576 (683)
T PF04842_consen 504 KWLQKLASWEEPLKTLVFLALFLYI-IYRGWLGYIFPAF-----LLFSAVFMLWLRY-QGRLGKSFGEVTVRDPPPKNTV 576 (683)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHh-hhccCCccceEEecCCCCccHH
Confidence 3456778999999999888877544 1223666655433 3444444555444 11223322 1222212 1
Q ss_pred e--eCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhH
Q 007866 456 E--LSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFKVAGSLYLSKLM--LQSFTWSIGLALVFAFTAFF 525 (586)
Q Consensus 456 ~--~~e~~~~~~~~~~~~~~n~~~~~~~~l~~~~d~~~~lk~~~~l~~ls~v--~~~~~tl~~~~~~~~~t~p~ 525 (586)
+ +.-...-.-+.......|-++-.+|.|.+-..-.-.-+|++.|-.+..+ .+-+=-++.+.++-.||-..
T Consensus 577 EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~ 650 (683)
T PF04842_consen 577 EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRES 650 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 2222222334567788999999999999999999999999999999888 66666666677777777543
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.57 Score=40.69 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
+|.|+|++|.+|..+++.|.+..+.++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 578999999999999999999644677764
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.41 Score=49.47 Aligned_cols=96 Identities=13% Similarity=-0.011 Sum_probs=64.5
Q ss_pred CCCEEEEcccCCCC-CC-ChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 84 GASTVFYVDATDLN-TD-DFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 84 ~~D~Vih~aa~~~~-~~-~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+++.+|.+-|.... .. .......+..+-+..++.+.. +.+.|++|.++|...- .....
T Consensus 203 ~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~~----------------~~s~~ 266 (410)
T PF08732_consen 203 DIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNNN----------------AISSM 266 (410)
T ss_pred hhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCcc----------------hhhhh
Confidence 34667776666521 11 112222444455556666666 6789999999997442 23456
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCC
Q 007866 158 DLMCDLKAQAEALVLFANNIDGL-LTCALRPSNVFGPGDT 196 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl-~~~ilRp~~v~G~~~~ 196 (586)
.+|..+|...|+-+...-. ..+ ..+|+|||-+.|...+
T Consensus 267 f~Yfk~K~~LE~dl~~~l~-~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 267 FPYFKTKGELENDLQNLLP-PKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhhhHHHHHHHHHHHhhcc-cccceEEEecCccccCCCCC
Confidence 7899999999999988754 223 5899999999997654
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.95 Score=48.02 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCC------------CCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLP------------DSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~------------~~l~~~~~~~~~~ 70 (586)
...+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.- ..... +....-+++.+..
T Consensus 37 ~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 37 KAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 356899995 588999999999999977888888774 334555321 00010 1112224555655
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+.. +...+.+.++|+||.+... +. .-..+-++|.+.++ .+|+.+..+-+|
T Consensus 116 ~~~~-~~~~~~~~~~D~Vvd~~d~------~~--------~r~~ln~~~~~~~~-p~v~~~~~g~~g 166 (390)
T PRK07411 116 RLSS-ENALDILAPYDVVVDGTDN------FP--------TRYLVNDACVLLNK-PNVYGSIFRFEG 166 (390)
T ss_pred ccCH-HhHHHHHhCCCEEEECCCC------HH--------HHHHHHHHHHHcCC-CEEEEEEccCEE
Confidence 5554 4556788999999998643 22 11224467788885 688887776665
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.5 Score=47.51 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|+|+++.+|+.++..|.++| .+|+.+ .+.+ ..+.+.+.++
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~--------~s~t------------------------~~l~~~~~~A 202 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTIL--------HSRS------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEE--------eCCc------------------------hhHHHHHhhC
Confidence 468999999999999999999999999 488883 2211 2356778899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||...+..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999988774
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.24 Score=48.12 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
|+|.|+||+|.+|+.++..|.+.|| +|.+.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~-~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN-KIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC-EEEEEEc
Confidence 5899999999999999999999995 8888544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.34 Score=50.30 Aligned_cols=119 Identities=22% Similarity=0.158 Sum_probs=64.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCC---CCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESN---SLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~--~l~r~~~~---~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|||.|. |+||+|-....-|.+.|| +|+++|+++.. .+.+...+ ..+.+.+... .. .+=++-.....++++
T Consensus 1 MkI~vi-GtGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~-~~--~gRl~fTtd~~~a~~ 75 (414)
T COG1004 1 MKITVI-GTGYVGLVTGACLAELGH-EVVCVDIDESKVELLNKGISPIYEPGLEELLKEN-LA--SGRLRFTTDYEEAVK 75 (414)
T ss_pred CceEEE-CCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc-cc--cCcEEEEcCHHHHHh
Confidence 688888 689999999999999997 99999998753 11111110 0011111100 00 000111122356778
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccc
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVF 137 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg 137 (586)
++|++|-+-|....+... .+......+++...++-.+ ++|.+=|+-..|
T Consensus 76 ~adv~fIavgTP~~~dg~-----aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG 125 (414)
T COG1004 76 DADVVFIAVGTPPDEDGS-----ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG 125 (414)
T ss_pred cCCEEEEEcCCCCCCCCC-----ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence 899999888876332211 1222233344443333222 666666665443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.16 Score=51.38 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++++|+|. |.+|+.+++.|...|. +|+++++. +++. ... ...+... .+.+.+.+.++++
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~-~V~v~~R~--------~~~~--~~~-~~~g~~~-----~~~~~l~~~l~~a 210 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA-RVFVGARS--------SADL--ARI-TEMGLIP-----FPLNKLEEKVAEI 210 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC-EEEEEeCC--------HHHH--HHH-HHCCCee-----ecHHHHHHHhccC
Confidence 45789999977 8899999999999995 99995443 2210 000 0011121 1245567788899
Q ss_pred CEEEEccc
Q 007866 86 STVFYVDA 93 (586)
Q Consensus 86 D~Vih~aa 93 (586)
|+||++..
T Consensus 211 DiVint~P 218 (287)
T TIGR02853 211 DIVINTIP 218 (287)
T ss_pred CEEEECCC
Confidence 99999763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.61 Score=46.62 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCC-eEEEEccCCCHHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGR-AEYHQVDVRDISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~-~l~~~~-~~~~~~Dl~d~~~l~~~l- 82 (586)
.++.+++|+||+|-+|+...+.-.-+|+ +|++ ....+++..+.. .+.... +.+..-|+ .+.|.++.
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVG--------iaGg~eK~~~l~~~lGfD~~idyk~~d~--~~~L~~a~P 217 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVG--------IAGGAEKCDFLTEELGFDAGIDYKAEDF--AQALKEACP 217 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCC-eEEE--------ecCCHHHHHHHHHhcCCceeeecCcccH--HHHHHHHCC
Confidence 3578999999999999999988778894 9998 566555443321 122221 22222222 24445544
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-C-CCEEEEecCccccc
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-K-VRRLVYNSTADVVF 137 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-g-vkr~I~~SS~~vyg 137 (586)
+|+|+-|.+-|-. +++++... + -.|++.|+-++-|.
T Consensus 218 ~GIDvyfeNVGg~-------------------v~DAv~~~ln~~aRi~~CG~IS~YN 255 (340)
T COG2130 218 KGIDVYFENVGGE-------------------VLDAVLPLLNLFARIPVCGAISQYN 255 (340)
T ss_pred CCeEEEEEcCCch-------------------HHHHHHHhhccccceeeeeehhhcC
Confidence 4789999887763 44544332 2 24899999999994
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.19 Score=47.74 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
||++.| ||+|.||..++++|.+.|| +|..
T Consensus 1 m~~~~i-~GtGniG~alA~~~a~ag~-eV~i 29 (211)
T COG2085 1 MMIIAI-IGTGNIGSALALRLAKAGH-EVII 29 (211)
T ss_pred CcEEEE-eccChHHHHHHHHHHhCCC-eEEE
Confidence 355655 7899999999999999997 6666
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.53 Score=47.62 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|.|.|.+|.+|+.++..|+++| ++|++++ +... .+.++.+.+
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~--------~~t~------------------------~l~e~~~~A 203 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH-CSVTVVH--------SRST------------------------DAKALCRQA 203 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEC--------CCCC------------------------CHHHHHhcC
Confidence 468999999999999999999999999 5999833 2110 245666789
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-+.+..
T Consensus 204 DIVIsavg~~ 213 (301)
T PRK14194 204 DIVVAAVGRP 213 (301)
T ss_pred CEEEEecCCh
Confidence 9999988774
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.72 Score=46.96 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.++|.| ||||-+|+.+++.|.+++. .+++.+.... ++.. +.+...+-++..-++.+. .|+++
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~-----~s~g-----k~i~f~g~~~~V~~l~~~-----~f~~v 66 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEP-----FGEE-----QGIRFNNKAVEQIAPEEV-----EWADF 66 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeeccccc-----ccCC-----CEEEECCEEEEEEECCcc-----CcccC
Confidence 468999 9999999999999998872 1355533320 1111 111111223333344332 46889
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
|+++. ++.. ..+.....+.++|. .+|=.||..-+
T Consensus 67 Dia~f-ag~~---------------~s~~~ap~a~~aG~-~VIDnSsa~Rm 100 (322)
T PRK06901 67 NYVFF-AGKM---------------AQAEHLAQAAEAGC-IVIDLYGICAA 100 (322)
T ss_pred CEEEE-cCHH---------------HHHHHHHHHHHCCC-EEEECChHhhC
Confidence 99999 6552 23456667778886 57777776554
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.66 Score=49.26 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
.|+|+|+|+ |..|+.++..+.+.| ++|.++|..+. .+. ... .-..+..|..|.+.+.++.+ ++
T Consensus 12 ~~~ilIiG~-g~~~~~~~~a~~~~G-~~v~~~~~~~~-----~~~-----~~~---ad~~~~~~~~d~~~l~~~~~~~~i 76 (395)
T PRK09288 12 ATRVMLLGS-GELGKEVAIEAQRLG-VEVIAVDRYAN-----APA-----MQV---AHRSHVIDMLDGDALRAVIEREKP 76 (395)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCC-----Cch-----HHh---hhheEECCCCCHHHHHHHHHHhCC
Confidence 468999975 799999999999999 58888665431 010 000 11356778889999888887 79
Q ss_pred CEEEEc
Q 007866 86 STVFYV 91 (586)
Q Consensus 86 D~Vih~ 91 (586)
|+|+-.
T Consensus 77 d~vi~~ 82 (395)
T PRK09288 77 DYIVPE 82 (395)
T ss_pred CEEEEe
Confidence 999864
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.5 Score=47.58 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=65.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+++++.|+|+.| +|+--++.-.+-|. +|++.|.. .. ..++++..-+.+.+..-..|++.+.++.+-.|
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~-rV~vis~~--------~~--kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGM-RVTVISTS--------SK--KKEEAIKSLGADVFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCc-EEEEEeCC--------ch--hHHHHHHhcCcceeEEecCCHHHHHHHHHhhc
Confidence 679999999999 99999999889995 99995543 21 11223333456666655558887777766555
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
.++|++... ...+ ..-+++.++..| ++|+++-.
T Consensus 249 g~~~~v~~~-a~~~-----------~~~~~~~lk~~G--t~V~vg~p 281 (360)
T KOG0023|consen 249 GGIDTVSNL-AEHA-----------LEPLLGLLKVNG--TLVLVGLP 281 (360)
T ss_pred Ccceeeeec-cccc-----------hHHHHHHhhcCC--EEEEEeCc
Confidence 555555422 1111 123566777666 78887754
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.2 Score=45.39 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=70.0
Q ss_pred EcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCCCEEEE
Q 007866 14 LNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGASTVFY 90 (586)
Q Consensus 14 TGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih 90 (586)
.| +|.+|+.++..|...+. .++.++|+... ...... -.+.+. +...++... + .| .+.++++|+||-
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~--~~~g~a-~Dl~~~~~~~~~~~~i~-~--~~----~~~~~daDivVi 70 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKD--KAEGEA-MDLQHAASFLPTPKKIR-S--GD----YSDCKDADLVVI 70 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCC--hhhHHH-HHHHHhhcccCCCeEEe-c--CC----HHHHCCCCEEEE
Confidence 45 59999999999988774 36999887542 111110 011111 111223332 2 23 357889999999
Q ss_pred cccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecC
Q 007866 91 VDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (586)
Q Consensus 91 ~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS 132 (586)
+||.. .+..+.....+.|+.-.+.+.+..++++-+ .+|.+|-
T Consensus 71 tag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 71 TAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 99986 334456788999999999999999888644 4555553
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.19 Score=51.27 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++++|.|. |.+|+.++..|.+.|. +|.++|+.. .+.... ...+...+ +.+.+.+.+.++|
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga-~V~v~~r~~--------~~~~~~---~~~G~~~~-----~~~~l~~~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGA-NVTVGARKS--------AHLARI---TEMGLSPF-----HLSELAEEVGKID 212 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCH--------HHHHHH---HHcCCeee-----cHHHHHHHhCCCC
Confidence 5789999986 8899999999999995 999965542 210000 01122221 2355677888999
Q ss_pred EEEEcc
Q 007866 87 TVFYVD 92 (586)
Q Consensus 87 ~Vih~a 92 (586)
+||++.
T Consensus 213 iVI~t~ 218 (296)
T PRK08306 213 IIFNTI 218 (296)
T ss_pred EEEECC
Confidence 999975
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.5 Score=42.68 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC-----CC---------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES-----NS---------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~-----~~---------~~~~~l~~~~~~~~~~ 70 (586)
...+|||.| .|-+|..+++.|...|.-.++++|.+. ..++.|+-- -+ .+.+....-+++.+..
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 96 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG 96 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 356899995 578999999999999977899988765 112222200 00 0001111123444444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
++ + .+.+.++|+||.+.. +... ...+-++|++.++ .||.+.+.+.+|.
T Consensus 97 ~~-~----~~~l~~fdvVV~~~~------~~~~--------~~~in~~c~~~~i-pfI~a~~~G~~G~ 144 (286)
T cd01491 97 PL-T----TDELLKFQVVVLTDA------SLED--------QLKINEFCHSPGI-KFISADTRGLFGS 144 (286)
T ss_pred cC-C----HHHHhcCCEEEEecC------CHHH--------HHHHHHHHHHcCC-EEEEEeccccEEE
Confidence 42 2 245678999998753 2222 2335578888886 7999999888864
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.77 Score=48.49 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=49.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D~ 87 (586)
||+|.| +|..|..+++.+.+.| ++|+++|... .... ..+ --..+..|..|.+.+.++.+ ++|+
T Consensus 1 kililG-~g~~~~~l~~aa~~~G-~~v~~~d~~~--------~~~~--~~~---ad~~~~~~~~d~~~l~~~~~~~~id~ 65 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLG-VEVIAVDRYA--------NAPA--MQV---AHRSYVINMLDGDALRAVIEREKPDY 65 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCC--------CCch--hhh---CceEEEcCCCCHHHHHHHHHHhCCCE
Confidence 689998 5999999999999999 5888865543 1100 001 12456678899999988887 7999
Q ss_pred EEEcc
Q 007866 88 VFYVD 92 (586)
Q Consensus 88 Vih~a 92 (586)
|+-..
T Consensus 66 v~~~~ 70 (380)
T TIGR01142 66 IVPEI 70 (380)
T ss_pred EEecc
Confidence 98643
|
This enzyme is an alternative to PurN (TIGR00639) |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.62 Score=48.24 Aligned_cols=32 Identities=22% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
.+.+|+|+||+|.+|..+++.+...|. +|++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~ 182 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGS 182 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence 467999999999999999999999995 78773
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.4 Score=44.02 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
|++|.|.|++|.+|+.+++.+.+....++.+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elva 31 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVA 31 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 3699999999999999999999754346554
|
|
| >KOG1496 consensus Malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.44 Score=45.77 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc---CCc---EEEEecCCcccccCCCCCCCCCCCCCCCCCeEE-EEccCCCHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL---GKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY-HQVDVRDISQIKK 80 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~---g~~---~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~-~~~Dl~d~~~l~~ 80 (586)
+-+|+||||+|.||.+++..+.+- |.+ ....+|+.+..+.-. +... .+...-... ..++..+.+ .+
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~Le----gV~m-ELqD~a~PlL~~Vvattd~--~~ 76 (332)
T KOG1496|consen 4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLE----GVKM-ELQDCALPLLKGVVATTDE--VE 76 (332)
T ss_pred ceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHH----HHHH-HHHhhhhhHHHhhhcccCh--hh
Confidence 569999999999999999987642 211 233433322110000 0000 000000111 112222222 56
Q ss_pred HhcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 81 VLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
+|+++|+.|-..+... ..-........|+.-.+.--.+..++ .+| ++.+.-.+- .+..-..+..| ....
T Consensus 77 afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~K-VlVVgNPaN-----TNali~~k~Ap-sIP~ 149 (332)
T KOG1496|consen 77 AFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVK-VLVVGNPAN-----TNALILKKFAP-SIPE 149 (332)
T ss_pred hhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCce-EEEecCccc-----cchhHHhhhCC-CCch
Confidence 7889999999998862 22234566677776544444444443 343 443332211 11111122222 1111
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD 195 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~ 195 (586)
.+.-..++.--.+.+-+.+.+.|+++.-+..-.|+|...
T Consensus 150 kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHS 188 (332)
T KOG1496|consen 150 KNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHS 188 (332)
T ss_pred hcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccc
Confidence 233344444444444455555566666666666677543
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.39 Score=50.97 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
++|+|||||++..+|..+++.|.+.|+ +|+++|...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 479999999999999999999999995 999877653
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.4 Score=44.63 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=52.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCC--CC------------CCCCCCCeEEEEcc
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSL--LP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~--~~------------~~l~~~~~~~~~~D 71 (586)
+|+|.| .|-+|.++++.|...|.-+++++|.+. ..++.|+.- ... .. +....-+++.+...
T Consensus 1 kVLIvG-aGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLG-AGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 578885 588999999999999977899988764 234555321 000 00 00111223333322
Q ss_pred C----------------CCHHHHHHHhcCCCEEEEcc
Q 007866 72 V----------------RDISQIKKVLEGASTVFYVD 92 (586)
Q Consensus 72 l----------------~d~~~l~~~l~~~D~Vih~a 92 (586)
+ .+.+.+.++++++|+||.+.
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t 116 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT 116 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECC
Confidence 2 35677889999999999986
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.53 Score=45.05 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|| |-+|...++.|++.|+ +|++++ +...+ .+........+.+..-++. ...++++
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga-~V~VIs--------~~~~~-~l~~l~~~~~i~~~~~~~~-----~~~l~~a 71 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGA-HIVVIS--------PELTE-NLVKLVEEGKIRWKQKEFE-----PSDIVDA 71 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEc--------CCCCH-HHHHHHhCCCEEEEecCCC-----hhhcCCc
Confidence 46789999987 9999999999999995 888843 22111 1111111234555443333 2346788
Q ss_pred CEEEEcc
Q 007866 86 STVFYVD 92 (586)
Q Consensus 86 D~Vih~a 92 (586)
|.||-+.
T Consensus 72 dlViaaT 78 (202)
T PRK06718 72 FLVIAAT 78 (202)
T ss_pred eEEEEcC
Confidence 9888653
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.36 E-value=5 Score=39.03 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCCC--CCCCC----------CCCCCeEEEE-ccC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESNS--LLPDS----------LSSGRAEYHQ-VDV 72 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~--~l~r~~~~~--~~~~~----------l~~~~~~~~~-~Dl 72 (586)
..+|+|.|. |-+|++.+++|.+.|--++++.|.+.-- ++.|+-..- ...+. .-.+..+... -|.
T Consensus 30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 357899864 8899999999999997678888877511 122221100 00000 0123333332 355
Q ss_pred CCHHHHHHHhc-CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 73 RDISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 73 ~d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
-+++.+++++. ++|+||.+.- |+..-..|++.|++++. -++||.++-
T Consensus 109 ~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~ki---~vIss~Gag 156 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRNKI---PVISSMGAG 156 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHcCC---CEEeecccc
Confidence 67788888775 5999999753 34445678999999987 355776653
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.52 Score=50.48 Aligned_cols=33 Identities=36% Similarity=0.487 Sum_probs=28.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|+|.|. |.|++|..++..|.+.|| +|+++|+..
T Consensus 1 mkI~vI-GlG~~G~~lA~~La~~G~-~V~~~d~~~ 33 (411)
T TIGR03026 1 MKIAVI-GLGYVGLPLAALLADLGH-EVTGVDIDQ 33 (411)
T ss_pred CEEEEE-CCCchhHHHHHHHHhcCC-eEEEEECCH
Confidence 478898 579999999999999995 999988765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.34 Score=49.74 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+++|+|.|+ |-+|..+++.|.+.|..+|.++| |++++. .+...+ +.. ..+.+.+.+.+.++
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~--------r~~~ra~~la~~~---g~~-----~~~~~~~~~~l~~a 239 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIAN--------RTYERAEELAKEL---GGN-----AVPLDELLELLNEA 239 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEe--------CCHHHHHHHHHHc---CCe-----EEeHHHHHHHHhcC
Confidence 5789999987 99999999999987755888844 433211 111111 111 22334567778889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||.+.+..
T Consensus 240 DvVi~at~~~ 249 (311)
T cd05213 240 DVVISATGAP 249 (311)
T ss_pred CEEEECCCCC
Confidence 9999998764
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=89.88 E-value=4.8 Score=43.07 Aligned_cols=113 Identities=15% Similarity=0.055 Sum_probs=69.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-----cEEEEecCCc--ccccCCCCC--CCCCC------------CCCCCCCeEEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-----CIVRVTDSTQ--SLQLDPSES--NSLLP------------DSLSSGRAEYH 68 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-----~~V~~~d~~~--~~~l~r~~~--~~~~~------------~~l~~~~~~~~ 68 (586)
+|+|.| .|-+|..+++.|...|. -+++++|.+. ..++.|+-- ..... +....-+++.+
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 578886 68999999999999985 5888888765 223444310 00000 01112245555
Q ss_pred EccCCCH-H-HH-HHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 69 QVDVRDI-S-QI-KKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 69 ~~Dl~d~-~-~l-~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
...+... + .+ .+.+++.|+|+.+.. |+..-..+-+.|...++ .+|..++.+-+|.
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD--------------n~~aR~~vn~~C~~~~i-Pli~~gt~G~~G~ 137 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD--------------NVDARMYVDRRCVYYRK-PLLESGTLGTKGN 137 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHhCC-CEEEEecccceeE
Confidence 5555321 1 12 345678999998642 23333456778888886 5888888777654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.3 Score=40.69 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|+|.|.++.+|+.++..|.++|. +|+..+.. . ..+.+..+.+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h~~--------T------------------------~~l~~~~~~A 80 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICHSK--------T------------------------KNLQEITRRA 80 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TT--------S------------------------SSHHHHHTTS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC-eEEeccCC--------C------------------------Ccccceeeec
Confidence 4689999999999999999999999994 88883221 1 1235667889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-.+|..
T Consensus 81 DIVVsa~G~~ 90 (160)
T PF02882_consen 81 DIVVSAVGKP 90 (160)
T ss_dssp SEEEE-SSST
T ss_pred cEEeeeeccc
Confidence 9999998875
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.76 E-value=4.2 Score=33.71 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=60.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (586)
+|||.||....-..+-+.+.+.| .+... ..|... +-.....+...+.++|.||
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G-~~~~~--------hg~~~~------------------~~~~~~~l~~~i~~aD~VI 53 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYG-GKLIH--------HGRDGG------------------DEKKASRLPSKIKKADLVI 53 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcC-CEEEE--------EecCCC------------------CccchhHHHHhcCCCCEEE
Confidence 48999997778888888888999 47666 211111 1112345788889999999
Q ss_pred EcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
-+.... +-..+..+-+.|++.++ +++|+.|.++
T Consensus 54 v~t~~v------------sH~~~~~vk~~akk~~i-p~~~~~~~~~ 86 (97)
T PF10087_consen 54 VFTDYV------------SHNAMWKVKKAAKKYGI-PIIYSRSRGV 86 (97)
T ss_pred EEeCCc------------ChHHHHHHHHHHHHcCC-cEEEECCCCH
Confidence 987764 23446678889999887 6888886654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.53 Score=51.12 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQS 44 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~ 44 (586)
||+|.|. |+||+|..++..|.++|+ ++|+++|.+..
T Consensus 1 ~m~I~Vi-G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 1 MVKICCI-GAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CCEEEEE-CCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 5789999 679999999999999853 48999998764
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.34 Score=50.15 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
+.+|||+||+|-+|+..++.+.+.|. ++++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~ 172 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVA 172 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEE
Confidence 68999999999999999999999995 5544
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.46 Score=50.01 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+.+|+|+|+ |-+|...++.|...|. +|.++|+... +... ....+ + ..+..+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~----~~~~---l~~~~---g-~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINID----RLRQ---LDAEF---G-GRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHH----HHHH---HHHhc---C-ceeEeccCCHHHHHHHHccCC
Confidence 3567999976 9999999999999995 8999665421 1000 00000 1 112345567788888999999
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
+||.++..
T Consensus 233 vVI~a~~~ 240 (370)
T TIGR00518 233 LLIGAVLI 240 (370)
T ss_pred EEEEcccc
Confidence 99998755
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.58 E-value=2 Score=44.29 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
..++|.|.|+ |.+|+.++..++..| ++|+++|..+
T Consensus 6 ~i~~VaVIGa-G~MG~giA~~~a~aG-~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGS-GVIGSGWVARALAHG-LDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 3578999964 999999999999999 5999988764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.47 Score=48.09 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~ 44 (586)
+++|.|.|+ |.+|+.++..|+..|+ +|+++|..++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 468999976 9999999999999995 9999888764
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.1 Score=46.11 Aligned_cols=32 Identities=22% Similarity=-0.016 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
.+.+|+|+||+|-+|..+++.+...|. +|++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~ 169 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGA 169 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEE
Confidence 467999999999999999999999995 78873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.39 Score=49.49 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH-HHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS-QIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~-~l~~~l~~~D 86 (586)
+++||+.| +||+.+..+..|.++++.+|++ ..|...+. .......+++.+..|+.|.+ .+++.....|
T Consensus 2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtv--------a~~~~~~~--~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D 70 (445)
T KOG0172|consen 2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTV--------ASRTLKDA--EALVKGINIKAVSLDVADEELALRKEVKPLD 70 (445)
T ss_pred CcceEEec-CccccchHHHHHhhcCCceEEE--------ehhhHHHH--HHHhcCCCccceEEEccchHHHHHhhhcccc
Confidence 57899995 6999999999999998777887 34432211 12223456889999999988 8999999999
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
.|+-+-..
T Consensus 71 ~viSLlP~ 78 (445)
T KOG0172|consen 71 LVISLLPY 78 (445)
T ss_pred eeeeeccc
Confidence 99988754
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.2 Score=45.11 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=44.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.+|.+|+.++..|+++| ++|++.+. |+. .+.++.+.+
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~~-------rT~-------------------------~l~e~~~~A 202 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAHS-------RTR-------------------------DLPAVCRRA 202 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCC-CEEEEECC-------CCC-------------------------CHHHHHhcC
Confidence 468999999999999999999999999 59998321 211 135666789
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-+.+..
T Consensus 203 DIVIsavg~~ 212 (296)
T PRK14188 203 DILVAAVGRP 212 (296)
T ss_pred CEEEEecCCh
Confidence 9999888764
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.1 Score=41.65 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=60.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc--ccCCCCCCCCCCCCCCCCC-----------eEEEEccCC--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPSESNSLLPDSLSSGR-----------AEYHQVDVR-- 73 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~--~l~r~~~~~~~~~~l~~~~-----------~~~~~~Dl~-- 73 (586)
.=|+|. |.|-+|++++..|++.|...++++|.++-+ ++.|..-. .+.+ ...++ ..+.+.|-+
T Consensus 75 syVVVV-G~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~A-tl~D-VG~PK~~clkkh~skiaPw~eIdar~~ 151 (430)
T KOG2018|consen 75 SYVVVV-GAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCA-TLAD-VGTPKVMCLKKHFSKIAPWCEIDARNM 151 (430)
T ss_pred cEEEEE-ecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhh-hHhh-cCCchHHHHHHHHHhhCccceecHHHh
Confidence 346666 458899999999999997679998876521 12221000 0000 00000 122333322
Q ss_pred --CHHHHHHHhc-CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 74 --DISQIKKVLE-GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 74 --d~~~l~~~l~-~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
+.+.=++++. ++|.|+.|. .|++.-..|+++|..+|++ .+||.++
T Consensus 152 l~~~~s~edll~gnPdFvvDci--------------DNidtKVdLL~y~~~~~l~---Viss~Ga 199 (430)
T KOG2018|consen 152 LWTSSSEEDLLSGNPDFVVDCI--------------DNIDTKVDLLEYCYNHGLK---VISSTGA 199 (430)
T ss_pred hcCCCchhhhhcCCCCeEeEhh--------------hhhhhhhHHHHHHHHcCCc---eEeccCc
Confidence 2222234443 488888875 2556666799999999986 2355544
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.2 Score=49.08 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc-cccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS-LQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~-~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
..+|+|.| +|-+|++++..|++.|..+++++|.+.. .++.|-.+..+.+.. ..+++.+...|..+.+.+.+++++.|
T Consensus 129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 45899995 6888999999999999778888766542 112221110011111 13456666666677888999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCE--EEEecCccccc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR--LVYNSTADVVF 137 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr--~I~~SS~~vyg 137 (586)
.|++.+... + ....+.+-++|.+.|..- ++..++....|
T Consensus 207 iVi~vsDdy----~--------~~~Lr~lN~acvkegk~~IPai~~G~~~liG 247 (637)
T TIGR03693 207 WVLYVSDNG----D--------IDDLHALHAFCKEEGKGFIPAICLKQVGLAG 247 (637)
T ss_pred EEEEECCCC----C--------hHHHHHHHHHHHHcCCCeEEEEEcccceeec
Confidence 999987542 1 222455777888888443 34444444443
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.52 Score=44.44 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=26.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~ 44 (586)
|+|.|. |.||+|-.++..|.+.|| +|+++|+++.
T Consensus 1 M~I~Vi-GlGyvGl~~A~~lA~~G~-~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVI-GLGYVGLPLAAALAEKGH-QVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS-EEEEE-S-HH
T ss_pred CEEEEE-CCCcchHHHHHHHHhCCC-EEEEEeCChH
Confidence 789998 789999999999999995 9999998764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.8 Score=41.50 Aligned_cols=89 Identities=24% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|| |-+|..-++.|++.|. +|++++. ...+ .+.......+++++..+... ..++++
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga-~VtVvsp--------~~~~-~l~~l~~~~~i~~~~~~~~~-----~dl~~~ 70 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGA-QLRVIAE--------ELES-ELTLLAEQGGITWLARCFDA-----DILEGA 70 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCC-EEEEEcC--------CCCH-HHHHHHHcCCEEEEeCCCCH-----HHhCCc
Confidence 35789999975 9999999999999995 8888433 2211 11111123468888888763 236788
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCC
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gv 124 (586)
|.||-+.+. + +.| ..+...|++.|+
T Consensus 71 ~lVi~at~d------~----~ln----~~i~~~a~~~~i 95 (205)
T TIGR01470 71 FLVIAATDD------E----ELN----RRVAHAARARGV 95 (205)
T ss_pred EEEEECCCC------H----HHH----HHHHHHHHHcCC
Confidence 888854222 1 122 347778887775
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.55 Score=50.10 Aligned_cols=74 Identities=8% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|.|+ |-.|+.++..|.+.|..++++ ..|+.++. .+.+.+. + +.....+++.+.+..
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V--------~nRt~~ra~~La~~~~--~-----~~~~~~~~l~~~l~~ 242 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIML--------ANRTIEKAQKITSAFR--N-----ASAHYLSELPQLIKK 242 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEE--------ECCCHHHHHHHHHHhc--C-----CeEecHHHHHHHhcc
Confidence 45789999977 999999999999999657888 45553321 1111110 0 122334666788889
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||++.+..
T Consensus 243 aDiVI~aT~a~ 253 (414)
T PRK13940 243 ADIIIAAVNVL 253 (414)
T ss_pred CCEEEECcCCC
Confidence 99999998765
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.52 Score=50.62 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|.|+ |-+|..+++.|...|..+|++.++ ++++. .+...+ +. +..+.+.+.+.+.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r--------~~~ra~~la~~~---g~-----~~~~~~~~~~~l~~ 242 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANR--------TLERAEELAEEF---GG-----EAIPLDELPEALAE 242 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeC--------CHHHHHHHHHHc---CC-----cEeeHHHHHHHhcc
Confidence 35689999976 999999999999999657888444 32211 011111 11 22233556677889
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||.+.+..
T Consensus 243 aDvVI~aT~s~ 253 (423)
T PRK00045 243 ADIVISSTGAP 253 (423)
T ss_pred CCEEEECCCCC
Confidence 99999987654
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.3 Score=44.61 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=44.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.+|.+|+.++..|+++|+ +|++. . +.. ..+.+..+.+
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~--------~-s~t-----------------------~~l~~~~~~A 202 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLT--------H-SRT-----------------------RNLAEVARKA 202 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEE--------C-CCC-----------------------CCHHHHHhhC
Confidence 4689999999999999999999999994 98882 1 100 0245667889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-+.|..
T Consensus 203 DIVI~avg~~ 212 (284)
T PRK14179 203 DILVVAIGRG 212 (284)
T ss_pred CEEEEecCcc
Confidence 9999998875
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=88.24 E-value=1.8 Score=44.35 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|.|. |.|.||+.+++.|...| .+|.++|... ... +++..+ ...+++.++++++
T Consensus 134 l~g~tvgIv-G~G~IG~~vA~~l~afG-~~V~~~~~~~--------~~~--------~~~~~~----~~~~~l~e~l~~a 191 (312)
T PRK15469 134 REDFTIGIL-GAGVLGSKVAQSLQTWG-FPLRCWSRSR--------KSW--------PGVQSF----AGREELSAFLSQT 191 (312)
T ss_pred cCCCEEEEE-CCCHHHHHHHHHHHHCC-CEEEEEeCCC--------CCC--------CCceee----cccccHHHHHhcC
Confidence 457899998 68999999999999999 5999965421 100 111111 1245678899999
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+|+.+....
T Consensus 192 Dvvv~~lPlt 201 (312)
T PRK15469 192 RVLINLLPNT 201 (312)
T ss_pred CEEEECCCCC
Confidence 9999887553
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.6 Score=45.98 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=46.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|.|.| .|-||+.+++.|...| .+|.++|+... .. + .. ...++. -..+++++++.+
T Consensus 190 L~gktVGIvG-~G~IG~~vA~~l~~fG-~~V~~~dr~~~---~~--~---~~---~~~g~~-------~~~~l~ell~~a 249 (385)
T PRK07574 190 LEGMTVGIVG-AGRIGLAVLRRLKPFD-VKLHYTDRHRL---PE--E---VE---QELGLT-------YHVSFDSLVSVC 249 (385)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEECCCCC---ch--h---hH---hhcCce-------ecCCHHHHhhcC
Confidence 4578999995 5999999999999999 59999665320 00 0 00 001111 123467788999
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+|+.+...
T Consensus 250 DvV~l~lPl 258 (385)
T PRK07574 250 DVVTIHCPL 258 (385)
T ss_pred CEEEEcCCC
Confidence 999887755
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=1 Score=47.18 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDS 41 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~ 41 (586)
.++|.|.|.+|.+|..+++.|.+. | ++|+++|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-~~V~g~D~ 37 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-LEVIGHDP 37 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-CEEEEEcC
Confidence 479999999999999999999975 6 58999654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.42 Score=48.21 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
..+++++|+|+ |.+|+.++..|.+.|..+|+++++
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeC
Confidence 35689999986 999999999999999448999444
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.7 Score=40.19 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=52.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCCC---------CCCCCCCCCeEEEEccCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNSL---------LPDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~-----~~~~---------~~~~l~~~~~~~~~~Dl~ 73 (586)
+|||.| .|-+|.++++.|...|.-+++++|.+. ..++.|+- +-+. +.+....-+++.+..++.
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 588886 689999999999999977888888765 22344431 0000 001112235666777777
Q ss_pred CHHHHHHHhcCCCEEEEcc
Q 007866 74 DISQIKKVLEGASTVFYVD 92 (586)
Q Consensus 74 d~~~l~~~l~~~D~Vih~a 92 (586)
+.+ .+.++++|+||.+.
T Consensus 80 ~~~--~~f~~~fdvVi~al 96 (291)
T cd01488 80 DKD--EEFYRQFNIIICGL 96 (291)
T ss_pred chh--HHHhcCCCEEEECC
Confidence 643 56778999999854
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.55 Score=48.14 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
.+.+++|+||+|.+|..+++.+.+.| .+|.++
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~ 193 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAV 193 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEE
Confidence 35789999999999999999999999 488773
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=7.1 Score=42.23 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=67.0
Q ss_pred EEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEEEcc
Q 007866 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVFYVD 92 (586)
Q Consensus 13 VTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vih~a 92 (586)
|+||+|-+|..+++.|...| .+|+. ..+.+.+. ......++.-+..|.+..+..+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g-~~v~~--------~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~------------- 97 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLG-YDVVA--------NNDGGLTW---AAGWGDRFGALVFDATGITDPA------------- 97 (450)
T ss_pred EEccCchhHHHHHHHHhhCC-Ceeee--------cCcccccc---ccCcCCcccEEEEECCCCCCHH-------------
Confidence 88999999999999999999 48887 33222100 0111122332333333221111
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHH
Q 007866 93 ATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL 172 (586)
Q Consensus 93 a~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~ 172 (586)
.... -.......+...... .|+|+++|.... .....|+.+|...+.+.+
T Consensus 98 ----------~l~~-~~~~~~~~l~~l~~~--griv~i~s~~~~------------------~~~~~~~~akaal~gl~r 146 (450)
T PRK08261 98 ----------DLKA-LYEFFHPVLRSLAPC--GRVVVLGRPPEA------------------AADPAAAAAQRALEGFTR 146 (450)
T ss_pred ----------HHHH-HHHHHHHHHHhccCC--CEEEEEcccccc------------------CCchHHHHHHHHHHHHHH
Confidence 1100 011122223332222 489999987542 111248999999998888
Q ss_pred hhcCC--CCceEEEEeCCC
Q 007866 173 FANNI--DGLLTCALRPSN 189 (586)
Q Consensus 173 ~~~~~--~gl~~~ilRp~~ 189 (586)
..+.+ .++....+.|+.
T Consensus 147 sla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 147 SLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHhhcCCEEEEEecCC
Confidence 77654 467777776653
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=87.70 E-value=4.1 Score=48.49 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCC-----CCC---------CCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSE-----SNS---------LLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~-----~~~---------~~~~~l~~~~~~~~~~ 70 (586)
...+|||.|. |-+|.++++.|...|.-.++++|... ..++.|+- +-+ .+.+....-+++.+..
T Consensus 23 ~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~ 101 (1008)
T TIGR01408 23 AKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV 101 (1008)
T ss_pred hhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence 3468999976 56999999999999977899988664 11222210 000 0001111123444444
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEecCcccccc
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFD 138 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gv-kr~I~~SS~~vyg~ 138 (586)
++. .+.++++|+||.+.. +... ...+-++|++++. ..||++++.+.||.
T Consensus 102 ~l~-----~e~l~~fdvVV~t~~------~~~~--------~~~in~~cr~~~~~I~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 102 PFN-----EEFLDKFQCVVLTEM------SLPL--------QKEINDFCHSQCPPIAFISADVRGLFGS 151 (1008)
T ss_pred cCC-----HHHHcCCCEEEECCC------CHHH--------HHHHHHHHHHcCCCeEEEEEeecceEEE
Confidence 443 346789999998632 2222 2346679999982 16999999988874
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=87.52 E-value=1.6 Score=45.59 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=47.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (586)
+|.|.|| |.+|+.+++++.+.| ++|+++|.... .+. ..+ .-+.+.+|..|.+.+.++.+.+|+|.
T Consensus 1 ~igiiG~-gql~~~l~~aa~~lG-~~v~~~d~~~~-----~p~-----~~~---ad~~~~~~~~d~~~i~~~a~~~dvit 65 (352)
T TIGR01161 1 TVGILGG-GQLGRMLALAARPLG-IKVHVLDPDAN-----SPA-----VQV---ADHVVLAPFFDPAAIRELAESCDVIT 65 (352)
T ss_pred CEEEECC-CHHHHHHHHHHHHcC-CEEEEECCCCC-----CCh-----hHh---CceeEeCCCCCHHHHHHHHhhCCEEE
Confidence 4789987 899999999999999 58998655321 011 000 12345789999999999999999763
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.6 Score=50.07 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=48.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|.|+ |-+|..+++.|.+.|..+|+++++ +.++. .+...+ +...+ +.+++.+.+.+
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~r--------s~~ra~~la~~~---g~~~i-----~~~~l~~~l~~ 240 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANR--------TYERAEDLAKEL---GGEAV-----KFEDLEEYLAE 240 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeC--------CHHHHHHHHHHc---CCeEe-----eHHHHHHHHhh
Confidence 35689999986 999999999999999558888444 33211 011111 11111 23456778889
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||.+.+..
T Consensus 241 aDvVi~aT~s~ 251 (417)
T TIGR01035 241 ADIVISSTGAP 251 (417)
T ss_pred CCEEEECCCCC
Confidence 99999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.3 Score=37.40 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
..++|-|.|+ |-+|++|.+.|.+.|+ +|.++
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~-~v~~v 39 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH-EVVGV 39 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS-EEEEE
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC-eEEEE
Confidence 4579999977 9999999999999995 88774
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.11 E-value=1.1 Score=42.70 Aligned_cols=36 Identities=33% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
+..+|+|+|+|. |.+|+++++.|.+.|+ +|++.|+.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 356789999977 7999999999999995 88896654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.7 Score=48.88 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D 86 (586)
.++|+|.| .|-+|+.+++.|.++|+ +++++|.++. ..+ .....+...+.+|.+|++.++++ ++++|
T Consensus 400 ~~~vII~G-~Gr~G~~va~~L~~~g~-~vvvID~d~~--~v~---------~~~~~g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 400 KPQVIIVG-FGRFGQVIGRLLMANKM-RITVLERDIS--AVN---------LMRKYGYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred cCCEEEec-CchHHHHHHHHHHhCCC-CEEEEECCHH--HHH---------HHHhCCCeEEEeeCCCHHHHHhcCCccCC
Confidence 35788885 79999999999999995 8999776642 111 11224678999999999988865 57789
Q ss_pred EEEEcc
Q 007866 87 TVFYVD 92 (586)
Q Consensus 87 ~Vih~a 92 (586)
+||-+.
T Consensus 467 ~vv~~~ 472 (601)
T PRK03659 467 AIVITC 472 (601)
T ss_pred EEEEEe
Confidence 888754
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.3 Score=45.33 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.|+|.|. |+|.+|+.++..|.+.|| +|++.|
T Consensus 4 ~m~I~ii-G~G~~G~~lA~~l~~~G~-~V~~~~ 34 (308)
T PRK14619 4 PKTIAIL-GAGAWGSTLAGLASANGH-RVRVWS 34 (308)
T ss_pred CCEEEEE-CccHHHHHHHHHHHHCCC-EEEEEe
Confidence 5789999 569999999999999995 999844
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.8 Score=42.83 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+.+++|+|++|-+|..+++.+...|. +|.+.+.
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~ 199 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAG 199 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 457899999999999999999999994 8887443
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.8 Score=37.31 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=48.5
Q ss_pred CeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|.|++ +-.|..+++.|.+.| ++|+.++- ... .. .+. ....++.| .=+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp--------~~~--~i------~G~-~~y~sl~e------~p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNP--------KGG--EI------LGI-KCYPSLAE------IPEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--EEEEEST--------TCS--EE------TTE-E-BSSGGG------CSST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECC--------Cce--EE------CcE-EeeccccC------CCCCC
Confidence 579999998 779999999999999 59998432 211 00 011 12223322 11457
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
|.++-+... ..+..+++.|.+.|++.+++.++
T Consensus 57 Dlavv~~~~---------------~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 57 DLAVVCVPP---------------DKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp SEEEE-S-H---------------HHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CEEEEEcCH---------------HHHHHHHHHHHHcCCCEEEEEcc
Confidence 888776532 22445788888889988888887
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.57 E-value=4.5 Score=39.21 Aligned_cols=107 Identities=22% Similarity=0.212 Sum_probs=67.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-------C---CCCCCCCCCCCeEEEE---ccCCC-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-------N---SLLPDSLSSGRAEYHQ---VDVRD- 74 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-------~---~~~~~~l~~~~~~~~~---~Dl~d- 74 (586)
|+|-+. |-|-.|..++++|++.|| +|+++|+.+. .+.+- . ..+...+..++..++- +|+.|
T Consensus 1 M~iGmi-GLGrMG~n~v~rl~~~gh-dvV~yD~n~~---av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMI-GLGRMGANLVRRLLDGGH-DVVGYDVNQT---AVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred Ccceee-ccchhhHHHHHHHHhCCC-eEEEEcCCHH---HHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHH
Confidence 345555 579999999999999996 9999998763 11100 0 1122334556666654 45665
Q ss_pred -HHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 75 -ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 75 -~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
.+++...++.-|+||.-.-. |..-+.+-.+...+.|+ +|+=+.+++
T Consensus 76 vi~~la~~L~~GDivIDGGNS-------------~y~Ds~rr~~~l~~kgi-~flD~GTSG 122 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNS-------------NYKDSLRRAKLLAEKGI-HFLDVGTSG 122 (300)
T ss_pred HHHHHHhhcCCCCEEEECCcc-------------chHHHHHHHHHHHhcCC-eEEeccCCC
Confidence 36667777778999984311 11223344556667787 677776553
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=2.8 Score=44.17 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=24.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcC--CcEEEEe
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELG--KCIVRVT 39 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g--~~~V~~~ 39 (586)
++|.|-|. |-||+.+.+.|.+++ ..+|++.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaI 92 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAI 92 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEE
Confidence 69999999 999999999999773 3467743
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=2 Score=43.17 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.++.+|+.++..|.++| .+|+++ .+.. ..+.+.++.+
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~-atVt~~--------hs~t------------------------~~l~~~~~~A 202 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAG-ATVTIC--------HSKT------------------------RDLAAHTRQA 202 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEe--------cCCC------------------------CCHHHHhhhC
Confidence 367999999999999999999999999 488872 2110 1245677889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-.+|..
T Consensus 203 DIVV~avG~~ 212 (285)
T PRK14189 203 DIVVAAVGKR 212 (285)
T ss_pred CEEEEcCCCc
Confidence 9999988854
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=1.9 Score=43.27 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.+..+|+.++..|+++|. +|+.++. .. ..+.+..+++
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs--------~T------------------------~~l~~~~~~A 203 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHR--------FT------------------------KNLRHHVRNA 203 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEEC--------CC------------------------CCHHHHHhhC
Confidence 4589999999999999999999999994 8888322 10 1246677889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||..+|..
T Consensus 204 DIvi~avG~p 213 (285)
T PRK10792 204 DLLVVAVGKP 213 (285)
T ss_pred CEEEEcCCCc
Confidence 9999998875
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=3.3 Score=44.74 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++|+|+|+ |-.|..+++.|.++| +.|.+.|.... ..... .+.. ...++.++.++..+ ..+.++|
T Consensus 4 ~~~~~~v~G~-g~~G~~~a~~l~~~g-~~v~~~d~~~~---~~~~~--~l~~--~~~gi~~~~g~~~~-----~~~~~~d 69 (445)
T PRK04308 4 QNKKILVAGL-GGTGISMIAYLRKNG-AEVAAYDAELK---PERVA--QIGK--MFDGLVFYTGRLKD-----ALDNGFD 69 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCC---chhHH--HHhh--ccCCcEEEeCCCCH-----HHHhCCC
Confidence 4689999997 579999999999999 59999776432 10000 1110 01356666555321 2346799
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
.||.-.|..
T Consensus 70 ~vv~spgi~ 78 (445)
T PRK04308 70 ILALSPGIS 78 (445)
T ss_pred EEEECCCCC
Confidence 999988875
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=0.85 Score=50.97 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=52.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
.+|+|. |.|-+|+++++.|.++|+ +|.+.|.+++ +- +.....+.+.+.+|..|++.++++ ++++|+
T Consensus 418 ~hiiI~-G~G~~G~~la~~L~~~g~-~vvvId~d~~----~~-------~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLV-GYGRVGSLLGEKLLAAGI-PLVVIETSRT----RV-------DELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEE-CCChHHHHHHHHHHHCCC-CEEEEECCHH----HH-------HHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 578888 469999999999999995 8888776542 10 111234688999999999988764 467897
Q ss_pred EEEcc
Q 007866 88 VFYVD 92 (586)
Q Consensus 88 Vih~a 92 (586)
|+=+.
T Consensus 485 viv~~ 489 (558)
T PRK10669 485 LLLTI 489 (558)
T ss_pred EEEEc
Confidence 77543
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=86.19 E-value=2.6 Score=47.12 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++|+|.|.|| |.+|+-++++..+.| ++|.++|..+. .+. ..+ --..+.+|..|.+.+.++.+.+
T Consensus 20 ~~~k~IgIIGg-Gqlg~mla~aA~~lG-~~Vi~ld~~~~-----apa-----~~~---AD~~~v~~~~D~~~l~~~a~~~ 84 (577)
T PLN02948 20 VSETVVGVLGG-GQLGRMLCQAASQMG-IKVKVLDPLED-----CPA-----SSV---AARHVVGSFDDRAAVREFAKRC 84 (577)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCC-----Cch-----hhh---CceeeeCCCCCHHHHHHHHHHC
Confidence 56789999976 699999999999999 59999665431 010 000 1245568899999998888889
Q ss_pred CEEEE
Q 007866 86 STVFY 90 (586)
Q Consensus 86 D~Vih 90 (586)
|+|..
T Consensus 85 dvIt~ 89 (577)
T PLN02948 85 DVLTV 89 (577)
T ss_pred CEEEE
Confidence 98754
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.18 E-value=1.8 Score=42.54 Aligned_cols=33 Identities=33% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+.+|+|+|++| +|..+++.+...| .+|.+++.
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~ 166 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDR 166 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcC
Confidence 467999999999 9999999999999 58888443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.6 Score=43.71 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+.+|+|+|+ |-+|...++.+...|..+|.+.|.
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4679999986 999999999999999546877443
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.6 Score=42.38 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.+..+|+.++..|+++|. +|+.++.. ...+.+.++.+
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~--------------------------------t~~l~~~~~~A 201 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHIL--------------------------------TKDLSFYTQNA 201 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCC--------------------------------cHHHHHHHHhC
Confidence 4689999999999999999999999994 88883210 02246677889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||-..|..
T Consensus 202 DIvV~AvG~p 211 (285)
T PRK14191 202 DIVCVGVGKP 211 (285)
T ss_pred CEEEEecCCC
Confidence 9999988775
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=1 Score=48.63 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=29.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
|+|.|.||+|.+|..+++.|.+.|+ +|.++|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 5899999999999999999999995 89995543
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=85.63 E-value=16 Score=36.67 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH-HHh-cCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-KVL-EGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~-~~l-~~~ 85 (586)
..+|.|.|++|-.|+.+++.+.+.+ .++.+. +.+.+........+...++.. ....|.+++- ... +.+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~-~~Lv~~-------~~~~~~~~~~~~~~~g~~v~~--~~~~dl~~~l~~~~~~~~ 80 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAG-LQLVPV-------SFTGPAGVGVTVEVCGVEVRL--VGPSEREAVLSSVKAEYP 80 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCC-CEEEEE-------eccccccccccceeccceeee--ecCccHHHHHHHhhccCC
Confidence 3699999999999999999999966 576551 222221111110111112222 2233444333 222 248
Q ss_pred C-EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 86 S-TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 86 D-~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
| ++|.+..+ .++...++.|.++|++
T Consensus 81 ~~VvIDFT~P---------------~a~~~~~~~~~~~g~~ 106 (286)
T PLN02775 81 NLIVVDYTLP---------------DAVNDNAELYCKNGLP 106 (286)
T ss_pred CEEEEECCCh---------------HHHHHHHHHHHHCCCC
Confidence 9 89998644 2345578899999985
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 586 | ||||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 8e-08 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 5e-07 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-06 | ||
| 2c29_D | 337 | Structure Of Dihydroflavonol Reductase From Vitis V | 6e-06 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 1e-05 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 2e-04 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 2e-04 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 3e-04 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 7e-04 |
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 586 | |||
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-54 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 3e-23 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-21 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 5e-21 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-20 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 4e-20 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-19 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 8e-19 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 1e-17 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 6e-17 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 7e-16 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 7e-16 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 8e-16 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 9e-16 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 5e-15 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 8e-15 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 2e-14 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 1e-13 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 1e-13 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 3e-13 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 5e-13 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 9e-13 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-12 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 2e-12 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 2e-12 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 2e-11 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 9e-11 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 3e-10 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 5e-10 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 7e-10 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 1e-09 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 2e-09 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 3e-09 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 1e-08 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 2e-08 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 5e-08 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-07 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 2e-07 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 3e-06 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 3e-06 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 4e-06 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 4e-06 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 9e-06 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 1e-05 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 4e-05 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 5e-05 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 5e-05 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 6e-05 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-04 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 1e-04 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 1e-04 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 5e-04 |
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-54
Identities = 46/346 (13%), Positives = 93/346 (26%), Gaps = 43/346 (12%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G +G + G I R + Q L E ++ D
Sbjct: 23 GLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLE---------------PECRVAEMLD 67
Query: 75 ISQIKKVLEGASTVFYVDA-TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ +++ L G V + + + AC + +V R++Y +A
Sbjct: 68 HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDL----KAQAEALVLFANNIDGLLTCALRPSN 189
+ G E + K + +GL P
Sbjct: 128 YAMPRH-PQGLPGHE--GLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGLPVVIGIPGM 183
Query: 190 VFGPGDTQLVPL-LVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248
V G D ++ G + N + A E
Sbjct: 184 VLGELDIGPTTGRVITAIGNGEMTHYVAGQRN---VIDAAEAGRGLLMALER------GR 234
Query: 249 AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308
G + +T ++ D I E LG P + + + + +
Sbjct: 235 IGERYLLTG-HNLEMADLTRRIAELLGQPAP-QPMSMAMAR----ALATLGRLRYRVSGQ 288
Query: 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
L +++ + + D A++ +G+ +L++ + I F
Sbjct: 289 LPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 3e-23
Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 47/239 (19%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE 66
V++ GFVG +L+ L G +VR P + +
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVR----------HPEKIKIENE------HLK 49
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ DV + ++ +V +GA V N D Y+ ++ ++ ++ V R
Sbjct: 50 VKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYD---ETIKVYLTIIDGVKKAGVNR 106
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALR 186
+ A GS I G + ++++ +KA E + F +
Sbjct: 107 FLMVGGA-----GSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFS 161
Query: 187 PSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
P+ PG ++V++ VE+ A A + E
Sbjct: 162 PAADMRPGVRTGRYRLGKDDMIVDIVGNSH--------------ISVEDYAAAMIDELE 206
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 69/392 (17%), Positives = 124/392 (31%), Gaps = 100/392 (25%)
Query: 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--STQSLQLDPSESNSLLPD 58
M + +V+ G GFVG +LV RLLELG V V D + N +PD
Sbjct: 25 MNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK------IN--VPD 76
Query: 59 SLSSGRAEYHQVDVRDISQIKKVLEGASTVF----------YVD--ATDLNTDDFYNCYM 106
+ + + D + + + + VF + D +
Sbjct: 77 H---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENN------- 126
Query: 107 IIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC-DL- 163
+ + K ++++VY++ + + + D E + +
Sbjct: 127 --TLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMS 184
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP---------------GDTQLVPLLVNLAKP 208
K E ++ + L T R NV+GP + P + A
Sbjct: 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALK 244
Query: 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLS 268
G + G DF +VE+VA+ + A G + N+
Sbjct: 245 GMPLPLENGGVATRDFIFVEDVANGLIACAAD------GTPGGVY---NI---------- 285
Query: 269 IILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT----- 323
+G I L I+E G + + +L R
Sbjct: 286 ----A-----------SGKETSIADLATKINEITG--------NNTELDRLPKRPWDNSG 322
Query: 324 -RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
R A++ +G+S VS+++G+ TI+
Sbjct: 323 KRFGSPEKARRELGFSADVSIDDGLRKTIEWT 354
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 68/378 (17%), Positives = 112/378 (29%), Gaps = 92/378 (24%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+ ++ GF+G +L+ LL+L V D +T LD S
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQW---SN 82
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFY--------------VDATDLNTDDFYNCYMIIVQ 110
++ Q D+R++ G V + + + N +
Sbjct: 83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-----------ID 131
Query: 111 GAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------- 163
G N++ A R+ KV+ Y +++ G H E
Sbjct: 132 GFLNMLIAARDAKVQSFTYAASSSTY--GDHPGLPKVED----------TIGKPLSPYAV 179
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKFIIG 216
K E + G T LR NVFG D +P + G +I G
Sbjct: 180 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING 239
Query: 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGY 276
GE DF Y+EN A++ AA A + I + +GL
Sbjct: 240 DGETSRDFCYIENTVQANLLAATAGL----DARNQVYNIAVGGRTSLNQLFFALRDGLAE 295
Query: 277 QRPFIKLPTGVVWYIILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKH 334
+ + G + A ++ A K
Sbjct: 296 NGVSYHRE----------PVYRDFREGDVRHSL------------ADISK------AAKL 327
Query: 335 IGYSPVVSLEEGVSSTIQ 352
+GY+P + GV+ +
Sbjct: 328 LGYAPKYDVSAGVALAMP 345
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 46/370 (12%), Positives = 90/370 (24%), Gaps = 107/370 (28%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----AEYHQVD 71
G GF+G+ +V + G + + + EY D
Sbjct: 10 GTGFLGQYVVESIKNDGNTPIIL-------------------TRSIGNKAINDYEYRVSD 50
Query: 72 VRDISQIKKVLEGASTVFY----------VDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
I + L V + + N +N+ AC E
Sbjct: 51 YTLEDLINQ-LNDVDAVVHLAATRGSQGKISEFHDN-----------EILTQNLYDACYE 98
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVLF 173
+ +VY ST +E L K E +
Sbjct: 99 NNISNIVYASTISAY--SDETSLPWNEK----------ELPLPDLMYGVSKLACEHIGNI 146
Query: 174 ANNIDGLLTCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231
+ GL LR ++++G + A G + + +F Y ++ A
Sbjct: 147 YSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAA 206
Query: 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ + A + F I + + + ++ + I G + +
Sbjct: 207 KSVIYALKQ------EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNP------ 254
Query: 292 ILLVKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+Y D A++ + +S + V
Sbjct: 255 --------NANEGIHSSY------------------MDSSKAKELLDFSTDYNFATAVEE 288
Query: 350 TIQSFSHLAR 359
L
Sbjct: 289 IHLLMRGLDD 298
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 58/365 (15%), Positives = 100/365 (27%), Gaps = 92/365 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +G LV L E + D + ++ G ++ +DV +
Sbjct: 7 SSGQIGTELVPYLAEKYGKKNVIAS-------DIVQRDT--------GGIKFITLDVSNR 51
Query: 76 SQIKKVLE--GASTVFY----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+I + +E +F+ + A D Y + + G N++ A ++ +V ++V
Sbjct: 52 DEIDRAVEKYSIDAIFHLAGILSAKGE--KDPALAYKVNMNGTYNILEAAKQHRVEKVVI 109
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---------KAQAEALVLFANNIDGL 180
ST V F + K AE L + GL
Sbjct: 110 PSTIGV-FGPETPKNKVPSI-----------TITRPRTMFGVTKIAAELLGQYYYEKFGL 157
Query: 181 LTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
+LR + G T + A + Y+ + A
Sbjct: 158 DVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKAL 217
Query: 235 VCAAEALDSRMVS-----VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
V EA ++V V F T E S I E + K
Sbjct: 218 VDLYEADRDKLVLRNGYNVTAYTF--TPSE------LYSKIKERIPEFEIEYKED----- 264
Query: 290 YIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349
+K+ A+ + D A G+S L+ +
Sbjct: 265 --------FRDKIA----------------ATWPESLDSSEASNEWGFSIEYDLDRTIDD 300
Query: 350 TIQSF 354
I
Sbjct: 301 MIDHI 305
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 58/374 (15%), Positives = 111/374 (29%), Gaps = 111/374 (29%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR---------AEYH 68
G +G + LLE G +V + D+ ++GR +
Sbjct: 31 GQIGSHIAELLLERGDKVVGI-------------------DNFATGRREHLKDHPNLTFV 71
Query: 69 QVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ + D + + +++ V + A+ + DD+YN + G NVV A ++ V R
Sbjct: 72 EGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGR 131
Query: 127 LVYNSTADVVFDGSHDI-----HNGDET-----LTCCWKFQDLMCDLKAQAEA-LVLFAN 175
VY TA H + ++ K+ E L
Sbjct: 132 FVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAIS------------KSANEDYLEYS-- 177
Query: 176 NIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
GL R +NV GP + +P+ G F+ + DF +V+++A A
Sbjct: 178 ---GLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFV---TKARRDFVFVKDLARAT 231
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
V A + + A+ ++ + + ++E +
Sbjct: 232 VRAVDGVGHG-------AYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR--------- 275
Query: 295 VKWIHEKLG--LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI- 351
D + G L+E V++ +
Sbjct: 276 ----ELGPDDAPSIL------------------LDPSRTIQDFGKIEFTPLKETVAAAVA 313
Query: 352 --------QSFSHL 357
++HL
Sbjct: 314 YFREYGVSGGYTHL 327
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 8e-19
Identities = 72/385 (18%), Positives = 122/385 (31%), Gaps = 106/385 (27%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD--ST-QSLQLDPSESNSLLPDSLSSGR 64
P+T ++ GF+G +L+ +LL+L +V D ST LD ++ L + R
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKT---LVSTEQWSR 80
Query: 65 AEYHQVDVRDISQIKKVLEGASTVF-----------------YVDATDLNTDDFYNCYMI 107
+ + D+RD++ ++V++G V N
Sbjct: 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNAT---------N---- 127
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---- 163
+ G N++ A + +V+ Y +++ G H E
Sbjct: 128 -ITGFLNILHAAKNAQVQSFTYAASSSTY--GDHPALPKVEE----------NIGNPLSP 174
Query: 164 ----KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQL-----VPLLVNLAKPGWTKF 213
K E G T LR NVFG D +P G +
Sbjct: 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVY 234
Query: 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273
I G GE DF Y++NV ++ +A A D S + + + + I +
Sbjct: 235 INGDGETSRDFCYIDNVIQMNILSALAKD----SAKDNIYNVAVGDRTTLNELSGYIYDE 290
Query: 274 LGYQRPFIKLPTGVVWYIILL------VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327
L KL I V+ HS + D
Sbjct: 291 LNLIHHIDKLS------IKYREFRSGDVR------------HSQA--------------D 318
Query: 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352
A + Y P + + EG+ ++
Sbjct: 319 VTKAIDLLKYRPNIKIREGLRLSMP 343
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 90/349 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
VV G GF+G +V +L E + + V D+ LSSG
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE--IVVIDN------------------LSSGNEEFVN 42
Query: 65 --AEYHQVDVRDISQIKKVLEGASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTA 118
A + D+ IK L+GA V+ D ++ Y V ++ A
Sbjct: 43 EAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVRI-GAENPDEIYRNNVLATYRLLEA 100
Query: 119 CRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAE 168
R+ V R+V+ ST+ V G + E + K E
Sbjct: 101 MRKAGVSRIVFTSTSTVY--GEAKVIPTPEDYPTHPISLYGAS------------KLACE 146
Query: 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
AL+ + + R +NV G T + ++ L + I+G+GE + Y
Sbjct: 147 ALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIY 206
Query: 227 VENVAHAHVCAAEALDSRMV-------------------SVAGMAFFITNLEPIKFWD-- 265
+ + A + + + G++ + W
Sbjct: 207 ISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGD 266
Query: 266 ----FLSII-LEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309
LSI L+ LG+ +P + + V+ + E L ++H
Sbjct: 267 VPVMLLSIEKLKRLGW-KPRYNSEEA----VRMAVRDLVEDLDEEGHHH 310
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 69/268 (25%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR----- 64
+V G GF+G +V LL G + + D+L++G+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVL-------------------DNLATGKRENVP 42
Query: 65 --AEYHQVDVRDISQIKKVLEGAS--TVF------YVDATDLNTDDFYNCYMIIVQGAKN 114
+ +VD+RD +++ V V + +D + + + G N
Sbjct: 43 KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVS---VEDPVLDFEVNLLGGLN 99
Query: 115 VVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLK 164
++ ACR+ V +LV+ ST ++ + +ET + K
Sbjct: 100 LLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAAS------------K 147
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLVPLLVNLAKPGWTKFIIGS-- 217
A E + GL +LR NV+GP G+ +V + G +
Sbjct: 148 AAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKT 207
Query: 218 ---GENMSDFTYVENVAHAHVCAAEALD 242
+ D+ YV +VA AH A +L+
Sbjct: 208 PGDEGCVRDYVYVGDVAEAHALALFSLE 235
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 7e-16
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 56/234 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G +GR + RL + + I+R+ D L P + E Q D+ D
Sbjct: 11 AAGQLGRVMRERLAPMAE-ILRLAD--------------LSPLDPAGPNEECVQCDLADA 55
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135
+ + ++ G + ++ F + G N+ A R R+V+ S+
Sbjct: 56 NAVNAMVAGCDGIVHL-GGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHT 114
Query: 136 VFDGSHDIHNG-DET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ G + ++ K E L + G T
Sbjct: 115 I--GYYPQTERLGPDVPARPDGLYGVS------------KCFGENLARMYFDKFGQETAL 160
Query: 185 LRPSNVFGPGD--------------TQLVPLLVNLAKPGWTKFIIGSGENMSDF 224
+R + + L+ + G + G+ N + +
Sbjct: 161 VRIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 7e-16
Identities = 51/373 (13%), Positives = 103/373 (27%), Gaps = 44/373 (11%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCI----VRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+++ G +G SL L V + P
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------------ARRTRPAWHEDNP 49
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYV-DATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Y Q D+ D + L + V +V T N + +NV+ A
Sbjct: 50 INYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNC 109
Query: 123 -KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL---KAQAEALVLFANNID 178
++ + + + + + + + ++ +
Sbjct: 110 PNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKE 169
Query: 179 GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG----------SGENMSDFTYVE 228
GL RP N+FG ++ L+ L G + + SD + +
Sbjct: 170 GLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDAD 229
Query: 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG-----YQRPFIKL 283
+A H+ AA AF ++N + K+ F ++ E G Y+
Sbjct: 230 LIAEHHIWAAVD-----PYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLK 284
Query: 284 PTGVVWYIILLVKWIHEKLGLR--TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV 341
++ + + I + GL + + D + K G+
Sbjct: 285 LQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFR 344
Query: 342 SLEEGVSSTIQSF 354
+ + S I
Sbjct: 345 NSKNAFISWIDKA 357
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 73/374 (19%), Positives = 123/374 (32%), Gaps = 100/374 (26%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR------ 64
VV G GF+G LV +L+ELG +V V D+LSSGR
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVV-------------------DNLSSGRREFVNP 43
Query: 65 -AEYHQVDVRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAK 113
AE H D++D S + VF + F V
Sbjct: 44 SAELHVRDLKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPIV---HFNEN----VVATF 94
Query: 114 NVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDL 163
NV+ R+ VR +V+ S++ V G D+ E
Sbjct: 95 NVLEWARQTGVRTVVFASSSTVY--GDADVIPTPEEEPYKPISVYGAA------------ 140
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFII-GSGENM 221
KA E + + G+ A+R +NV GP ++ + + + G G
Sbjct: 141 KAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQR 200
Query: 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI 281
+ YV + A + A + + + +A + N++ ++ D I+ E LG +
Sbjct: 201 KSYLYVRDAVEATLAAWKKFEE--MDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIR 258
Query: 282 KLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL-ASRTRTFDCIAAQKHIGYSPV 340
+P T + + + + T+ K G+ P
Sbjct: 259 LVP--------------------STPDGRGWPGDVKYMTLAVTK------LMKLTGWRPT 292
Query: 341 VSLEEGVSSTIQSF 354
++ E V T +
Sbjct: 293 MTSAEAVKKTAEDL 306
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 9e-16
Identities = 38/254 (14%), Positives = 67/254 (26%), Gaps = 80/254 (31%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA----EYHQVD 71
G VG ++ L L VR++D + G A E D
Sbjct: 10 AAGGVGSAIRPHLGTLA-HEVRLSDI------------------VDLGAAEAHEEIVACD 50
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ D + +++ + + D N + GA N+ A R
Sbjct: 51 LADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQAN-----------IIGAYNLYEAARN 99
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDET---------LTCCWKFQDLMCDLKAQAEALVL 172
R+V+ S+ + E L+ K E L
Sbjct: 100 LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLS------------KCFGEDLAS 147
Query: 173 FANNIDGLLTCALRPSNVFGPGDT--------------QLVPLLVNLAKPGWTKFIIGSG 218
+ + T +R + F +L+ K G T + G+
Sbjct: 148 LYYHKFDIETLNIRIGSCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCT-VVYGAS 206
Query: 219 ENMSDFTYVENVAH 232
N + + A
Sbjct: 207 ANTESWWDNDKSAF 220
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 61/365 (16%), Positives = 104/365 (28%), Gaps = 83/365 (22%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 54 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 106
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 107 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIP-FLY 160
Query: 130 NSTADVVFDGSHDIHNGDETL--------TCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
S+A + D E + K + V
Sbjct: 161 ASSAATYGGRTSDFIESREYEKPLNVFGYS------------KFLFDEYVRQILPEANSQ 208
Query: 182 TCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAH 234
R NV+GP G V L G + + GS DF YV +VA +
Sbjct: 209 IVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN 268
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIIL 293
+ E S + ++ T F L + +I P
Sbjct: 269 LWFLENGVSGIFNLG------TG-RAESFQAVADATLAYHKKGQIEYIPFP--------- 312
Query: 294 LVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQS 353
+KL R + + D + P ++ EGV+ +
Sbjct: 313 ------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVTEYMAW 352
Query: 354 FSHLA 358
+ A
Sbjct: 353 LNRDA 357
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 8e-15
Identities = 62/377 (16%), Positives = 102/377 (27%), Gaps = 89/377 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G L L+ G V V D L++ P L E + D+ D+
Sbjct: 15 GAGFIGGHLARALVASG-EEVTVLDD---LRVPPMIPPEGTGKFLEKPVLELEERDLSDV 70
Query: 76 SQIKKVLEGA--STVFYVD---ATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + S N V ++++ C V ++V
Sbjct: 71 RLV--YHLASHKSVPRSFKQPLDYLDN-----------VDSGRHLLALCTSVGVPKVVVG 117
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------KAQAEALVL-FANNIDGLL 181
ST +V G D E K E +
Sbjct: 118 STCEVY--GQADTLPTPED----------SPLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 182 TCALRPSNVFGP-GDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
+R NV+GP + P L + G GE DFTY+ +V V A
Sbjct: 166 VGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWI 298
+ + + D + I+ + +
Sbjct: 226 -------RPLPSVVNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEI---------- 268
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357
+ D + IG S + +EEG+ T++ +
Sbjct: 269 ---------TEFRA--------------DTALQTRQIGERSGGIGIEEGIRLTLEWWQ-- 303
Query: 358 ARDSSLAYSRDFNEQSK 374
+RD R F E+
Sbjct: 304 SRDLDDIRQRIFQEEGA 320
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 62/370 (16%), Positives = 102/370 (27%), Gaps = 93/370 (25%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G ++V L + G + V D+ L L D + + D
Sbjct: 7 GAGFIGSNIVKALNDKGITDILVVDN-----LKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 76 SQIKKVLEGASTVF----YVDATDLNTDDFYNCYMII--VQGAKNVVTACRECKVRRLVY 129
+ +F T+ + YM+ Q +K ++ C E ++ +Y
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGK-----YMMDNNYQYSKELLHYCLEREIPF-LY 113
Query: 130 NSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVLFANNIDG 179
S+A G + + K + V
Sbjct: 114 ASSAATY--GGRTSDFIESREYEKPLNVYGYS------------KFLFDEYVRQILPEAN 159
Query: 180 LLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFII-GSGENMSDFTYVENVAH 232
R NV+GP G V L G + + GS DF YV +VA
Sbjct: 160 SQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAD 219
Query: 233 AHVCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRP-FIKLPTGVV 288
++ E S I NL F L + +I P
Sbjct: 220 VNLWFLENGVSG----------IFNLGTGRAESFQAVADATLAYHKKGQIEYIPFP---- 265
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
+KL R + + D + P ++ EGV+
Sbjct: 266 -----------DKLKGRYQAFTQA--------------DLTNLRAAGYDKPFKTVAEGVT 300
Query: 349 STIQSFSHLA 358
+ + A
Sbjct: 301 EYMAWLNRDA 310
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 64/376 (17%), Positives = 112/376 (29%), Gaps = 86/376 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D + E+H VD
Sbjct: 33 SITGAGGFIASHIARRLKHEG-HYVIASDW-----KKNEHMTEDMFCD------EFHLVD 80
Query: 72 VRDISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+R + KV EG VF ++ + YN + N++ A R
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI--MYNN----TMISFNMIEAARI 134
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMC-DL-KAQAEALVLFANN 176
++R Y S+A + W + L K E L N
Sbjct: 135 NGIKRFFYASSACIY--PEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNK 192
Query: 177 IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFII-GSGENMSDFTYVEN 229
G+ R N++GP T + A+ +F + G G FT+++
Sbjct: 193 DFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 252
Query: 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGV 287
E + S I + E + + ++L + P I P GV
Sbjct: 253 C-------VEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV 305
Query: 288 VWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGV 347
R R D ++ +G++P + L+EG+
Sbjct: 306 ----------------------------------RGRNSDNNLIKEKLGWAPNMRLKEGL 331
Query: 348 SSTIQSF-SHLARDSS 362
T + ++ +
Sbjct: 332 RITYFWIKEQIEKEKA 347
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 70/378 (18%), Positives = 128/378 (33%), Gaps = 87/378 (23%)
Query: 3 FDEAIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTD--STQSLQLDPSESNSLLPDS 59
DE +T ++ G GFVG +L E K V V D + +L + S+ +
Sbjct: 5 DDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKN 64
Query: 60 LSSGRAEYHQVDVRDISQIKKVLE-GASTVFY------VDATDLNTDDFYNCYMIIVQGA 112
L + E D+ + ++++ + +F+ + N Q
Sbjct: 65 LIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTN-----YQAF 119
Query: 113 KNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------K 164
N++ R K + ++Y S+A V G+ + K
Sbjct: 120 LNLLEIARSKKAK-VIYASSAGVY---------GNTKAP----NVVGKNESPENVYGFSK 165
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP-----GDTQLV-PLLVNLAKPGWTKFIIGSG 218
+ VL ++ + + LR NV+GP T + L A + G
Sbjct: 166 LCMDEFVL--SHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFG 223
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
E + DF Y+E+V A+V A +A S + +V + + + + +SI+ E LG +
Sbjct: 224 EQLRDFVYIEDVIQANVKAMKAQKSGVYNVG------YS-QARSYNEIVSILKEHLGDFK 276
Query: 279 P-FIKLP-TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIG 336
+IK P + H+ A +
Sbjct: 277 VTYIKNPYAF---FQ----------------KHT--------QAHIEP------TILDLD 303
Query: 337 YSPVVSLEEGVSSTIQSF 354
Y+P+ LE G+ +
Sbjct: 304 YTPLYDLESGIKDYLPHI 321
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-13
Identities = 44/263 (16%), Positives = 90/263 (34%), Gaps = 39/263 (14%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L RL G VT +S + +G + DV
Sbjct: 12 GDLGLELARRLTAQG---HEVTGLRRS------------AQPMPAG-VQTLIADVTRPDT 55
Query: 78 IKKVLEGASTVFYVDAT-DLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136
+ ++ + +D+ Y + V+G +N ++A ++ + + S+ V
Sbjct: 56 LASIVHLRPEILVYCVAASEYSDEHYR--LSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113
Query: 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT 196
+ DE +D +AEAL+ + LR S ++GPG
Sbjct: 114 GQEVEEW--LDEDTPP--IAKDFSGKRMLEAEALLA------AYSSTILRFSGIYGPGRL 163
Query: 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT 256
+++ T + ++ + ++ A A + R +V + +T
Sbjct: 164 RMIRQAQ-------TPEQWPARNAWTNRIHRDDGAAF---IAYLIQQRSHAVPERLYIVT 213
Query: 257 NLEPIKFWDFLSIILEGLGYQRP 279
+ +P+ D L + + G P
Sbjct: 214 DNQPLPVHDLLRWLADRQGIAYP 236
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G ++ LLE G V T ++ + + L +S + + D+ +
Sbjct: 11 GFLGSWIIKSLLENG-YSVNTT--IRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDS 67
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+EG +F+ A+ D + + V GA ++ AC K V+R +Y S+
Sbjct: 68 FAAAIEGCVGIFHT-ASPIDFAVSEPEE-IVTKRTVDGALGILKACVNSKTVKRFIYTSS 125
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
V D DE+ + + K AE VL F N ID ++T
Sbjct: 126 GSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID-VVT 184
Query: 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY----VENVAHAHVCAA 238
L + G +P + A ++G E + + V++VA AH+
Sbjct: 185 --LILPFIVGRFVCPKLPDSIEKAL----VLVLGKKEQIGVTRFHMVHVDDVARAHIYLL 238
Query: 239 E 239
E
Sbjct: 239 E 239
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 60/241 (24%), Positives = 100/241 (41%), Gaps = 31/241 (12%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF+G LV+RLLE G VR T + + + LL + + D+ D
Sbjct: 15 GFIGSWLVMRLLERG-YTVRAT--VRDPT-NVKKVKHLLDLPKAETHLTLWKADLADEGS 70
Query: 78 IKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYNST 132
+ ++G + VF+V AT D + D N +I ++G ++ +C K VRRLV+ S+
Sbjct: 71 FDEAIKGCTGVFHV-ATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128
Query: 133 ADVVFDGSHDIHNGDET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNIDGLLT 182
A V H + DE+ + C + K AE +A NNID +T
Sbjct: 129 AGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNID-FIT 187
Query: 183 CALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
+ P+ V GP +P ++ + I ++++ +AH+
Sbjct: 188 --IIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVH---LDDLCNAHIYLF 242
Query: 239 E 239
E
Sbjct: 243 E 243
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 48/369 (13%), Positives = 106/369 (28%), Gaps = 99/369 (26%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G L +L +L + D + N+ D ++SG + V+ D +Q
Sbjct: 12 GQIGTELTQKLRKLYGTENVIAS-------DIRKLNT---DVVNSGP--FEVVNALDFNQ 59
Query: 78 IKKVL--EGASTVF---------YVD----ATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
I+ ++ + ++ A DLN + +V+ +
Sbjct: 60 IEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN-----------MNSLFHVLNLAKAK 108
Query: 123 KVRRLVYNSTADVVFDGSHDIHNGDET----------LTCCWKFQDLMCDLKAQAEALVL 172
K++++ + S+ VF + N + ++ K E
Sbjct: 109 KIKKIFWPSSIA-VFGPTTPKENTPQYTIMEPSTVYGIS------------KQAGERWCE 155
Query: 173 FANNIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226
+ +NI G+ ++R + G T + A S E Y
Sbjct: 156 YYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMY 215
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+++ A + +A ++ + + P + + + +
Sbjct: 216 MDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFT----------- 264
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
I +K+ S + D A++ + LE
Sbjct: 265 -----ITYEPDFRQKIA----------------DSWPASIDDSQAREDWDWKHTFDLESM 303
Query: 347 VSSTIQSFS 355
I+ S
Sbjct: 304 TKDMIEHLS 312
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-12
Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 40/238 (16%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++ G IVR + + Q D+ D
Sbjct: 10 GRAGSRILEEAKNRGHEVTAIVR----------NAGKITQTHK------DINILQKDIFD 53
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
L + V + + + V ++++ RL+ A
Sbjct: 54 --LTLSDLSDQNVVVDAYGISPDEAEKH------VTSLDHLISVLNGTVSPRLLVVGGAA 105
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+ + + +AQA+ L ++ + PS +F PG
Sbjct: 106 SLQIDEDGNTLLESK---GLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPG 162
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE--ALDSRMVSVAG 250
+ + G + F +E+ A A + E + +VAG
Sbjct: 163 ERTGDYQIG-----KDHLLFGSDGNS---FISMEDYAIAVLDEIERPNHLNEHFTVAG 212
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 36/229 (15%), Positives = 72/229 (31%), Gaps = 53/229 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G + + + ++ G +VR D S S P A DV
Sbjct: 13 GQTGLTTLAQAVQAGYEVTVLVR----------DSSRLPSEGPR-----PAHVVVGDVLQ 57
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + K + G V + T + ++ +GA+N+V A + V ++V ++A
Sbjct: 58 AADVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
+++D + + Q + D + ++ + GL A+ P G
Sbjct: 114 LLWDPTKVPP----------RLQAVTDD-HIRMHKVLRES----GLKYVAVMPP-HIGDQ 157
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ G S ++ H L +
Sbjct: 158 P------------LTGAYTVTLDGRGPSRVISKHDLGH---FMLRCLTT 191
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 45/276 (16%), Positives = 74/276 (26%), Gaps = 50/276 (18%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-----------DSLS 61
V+ G G+ G + L L + + V + + L SL P +L+
Sbjct: 16 VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75
Query: 62 SGRAEYHQVDVRDISQIKKVL--EGASTVF------YVDATDLNTDDFYNCYMIIVQGAK 113
E + D+ D + + +V + ++ V G
Sbjct: 76 GKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTL 135
Query: 114 NVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL--------- 163
NV+ A +E LV T + DI G T+T + L
Sbjct: 136 NVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLS 195
Query: 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPG--------------------DTQLVPLLV 203
K + F G+ L V+G T L V
Sbjct: 196 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCV 255
Query: 204 NLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
A G + G G + + + A
Sbjct: 256 QAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA 290
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 9e-11
Identities = 32/242 (13%), Positives = 49/242 (20%), Gaps = 54/242 (22%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
++ +L G GR L+ +LE G I R L D +
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGR---------------RKLTFDEEAYK 63
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
VD + +G F T + +
Sbjct: 64 NVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGG 123
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
+ S+ G+ N K + EA V +
Sbjct: 124 CKHFNLLSSK-----GADKSSNFLYLQV------------KGEVEAKVE---ELKFDRYS 163
Query: 184 ALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
RP + LV W V V A +
Sbjct: 164 VFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGH---------SVPVVTVVRAMLNNV 214
Query: 239 EA 240
Sbjct: 215 VR 216
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-10
Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 52/235 (22%)
Query: 12 VVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+V+ G V R L+ L G +VR + + L G ++
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAMVR----------NEEQGPELRER----GASDIV 70
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
++ + V + A +I + GA + + ++R +
Sbjct: 71 VANLEE--DFSHAFASIDAVVFA-AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFI 127
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S+ G+ D G + K A+ + + L +RP
Sbjct: 128 MVSSV-----GTVDPDQGPMNMR-------HYLVAKRLADDELKRS----SLDYTIVRPG 171
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
+ T V + ++ +VA AE +D
Sbjct: 172 PLSNEESTGKVTV-------------SPHFSEITRSITRHDVAK---VIAELVDQ 210
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 5e-10
Identities = 32/256 (12%), Positives = 65/256 (25%), Gaps = 61/256 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G G ++V G +VR DP ++ L A +
Sbjct: 10 GRAGSAIVAEARRRGHEVLAVVR----------DPQKAADRL-------GATVATLVKEP 52
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + L+ V + + Y + + A ++V+ R + +A
Sbjct: 53 LVLTEADLDSVDAVVDALSVPWGSGRGY----LHLDFATHLVSLLRNSDTLAVFILGSAS 108
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-----GLLTCALRPSN 189
+ G+ D F + AL + + + PS
Sbjct: 109 LAMPGADHPMILD--------FPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSE 160
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD-----FTYVENVAHAHVCAAEALDSR 244
F G T ++ G + N+A A + E
Sbjct: 161 AFPSGPA--------------TSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEHP--- 203
Query: 245 MVSVAGMAFFITNLEP 260
+ + + +
Sbjct: 204 --TAIRDRIVVRDADL 217
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 56/368 (15%), Positives = 102/368 (27%), Gaps = 90/368 (24%)
Query: 18 GFVGRSLVLRLLELGKCI------VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
G VGR L RL++ G + D P SG + D
Sbjct: 24 GMVGRKLTQRLVKDGSLGGKPVEKFTLIDV-----FQPEAPAGF------SGAVDARAAD 72
Query: 72 VRDISQIKKVLE-GASTVF----YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR- 125
+ + +K++E +F V DF Y I + G + + A R +
Sbjct: 73 LSAPGEAEKLVEARPDVIFHLAAIVSGE--AELDFDKGYRINLDGTRYLFDAIRIANGKD 130
Query: 126 ----RLVYNSTADVVFDGSHDIHNGDETLT------CCWKFQDLMCDLKAQAEALVLFAN 175
R+V+ S+ VF DE T K +C E L+ +
Sbjct: 131 GYKPRVVFTSSI-AVFGAPLPYPIPDEFHTTPLTSYGTQK---AIC------ELLLSDYS 180
Query: 176 NIDGLLTCALRPSNVFGP------GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY--- 226
+R + + ++ G +
Sbjct: 181 RRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240
Query: 227 -VENVAHAHVCAAEAL-DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
V + H + E + R +S+ G++ T E +E L
Sbjct: 241 AVGFLIHGAMIDVEKVGPRRNLSMPGLSA--TVGE----------QIEALRKVAG----- 283
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ + L + + F+ A++ +G++ S E
Sbjct: 284 --------------EKAVALIRREPNEMIMRMC--EGWAPGFEAKRARE-LGFTAESSFE 326
Query: 345 EGVSSTIQ 352
E + I+
Sbjct: 327 EIIQVHIE 334
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 31/247 (12%), Positives = 63/247 (25%), Gaps = 63/247 (25%)
Query: 18 GFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G G+ + +L E K +VR + + A+ D+
Sbjct: 14 GRTGQIVYKKLKEGSDKFVAKGLVR----------SAQGKEKIGGE------ADVFIGDI 57
Query: 73 RDISQIKKVLEGASTVFYV----------------DATDLNTDDFYNCYMIIVQGAKNVV 116
D I +G + + + +D + G KN +
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A + V+ +V + G+ + K +AE + +
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNI----------LVWKRKAEQYLADS-- 165
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
G +R + L+ G ++ + +VA
Sbjct: 166 --GTPYTIIRAGGLLDKEGGVRELLV------GKDDELLQTDTKTVP---RADVAE---V 211
Query: 237 AAEALDS 243
+AL
Sbjct: 212 CIQALLF 218
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSG 63
+ VV G G G S+ LLE G + R + +L
Sbjct: 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-------------RLQ 51
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACREC 122
AE Q D D ++ L GA F + T+ + +C V+ K + R
Sbjct: 52 GAEVVQGDQDDQVIMELALNGAYATF------IVTNYWESCSQEQEVKQGKLLADLARRL 105
Query: 123 KVRRLVYNSTADV 135
+ +VY+ ++
Sbjct: 106 GLHYVVYSGLENI 118
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 53/227 (23%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-R 73
G VG+SL+ L R + + DV
Sbjct: 10 GRVGKSLLKSLSTTDYQIYAGAR----------KVEQVPQY-------NNVKAVHFDVDW 52
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
++ K L G + ++ + + + GA ++ A + +V+R + ST
Sbjct: 53 TPEEMAKQLHGMDAI--INVSGSGGKSLLK---VDLYGAVKLMQAAEKAEVKRFILLSTI 107
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193
I G + L K A+ + N+D ++P +
Sbjct: 108 F-SLQPEKWIGAGFDALK-------DYYIAKHFADLYLTKETNLD---YTIIQPGALTEE 156
Query: 194 GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240
T L+ + + +S + +VA
Sbjct: 157 EATGLIDI----------------NDEVSASNTIGDVADTIKELVMT 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 85/619 (13%), Positives = 182/619 (29%), Gaps = 175/619 (28%)
Query: 67 YHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---YNCYMIIVQGAKNVVTACRECK 123
+H +D + + + Y D + D F ++C + K++++ E
Sbjct: 4 HHHMDF-ETGEHQ--------YQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSK-EEID 52
Query: 124 -----------VRRLVY------NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166
RL + + I+ + + + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQP 105
Query: 167 AEALVLFANNIDGLLTC--ALRPSNVFGPGD-TQLVPLLVNLAKPGWTKFII-----GSG 218
+ ++ D L NV +L L+ L +P K ++ GSG
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPA--KNVLIDGVLGSG 162
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW---------DFLSI 269
+ A + S V M F I FW + +
Sbjct: 163 K--------------TWVALDVCLSYKV-QCKMDFKI-------FWLNLKNCNSPETVLE 200
Query: 270 ILEGLGYQ--RPFIKLPTGVVWYIILLVKWIHEKLGL---RTYNHSL------------S 312
+L+ L YQ + + + E L + Y + L +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 313 A----CYIVQLASRTRT-FDCIAAQ--KHI-------GYSPVVSLE---EGVSSTIQSFS 355
A C I+ L +R + D ++A HI +P + + Q
Sbjct: 261 AFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 356 HLARDSS-LAYS------RDFN------EQSKVEKLLGGGKVA-DILLWKDEKKTFTYFL 401
++ S RD + +KL + + ++L + +K F
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 402 VL---------VLLFYWFFLGGST----LTSSAAKFLLLLSAVLFGYGILPSNIFGFNVK 448
V +L WF + S + L+ I +I+ +K
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIY-LELK 436
Query: 449 RISPSCFELSETVI-KDSIARIAFLWNMG--------FRNI----RLLAKGDDWNTFFKV 495
+ + L +++ +I + ++ + +I + + + F
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM- 495
Query: 496 AGSLYL------SKLMLQSFTWSIGLALVFAFTAFFVYEQY----EPEIDGLAKFLFNYL 545
++L K+ S W+ +++ Y+ Y +P+ + L + ++L
Sbjct: 496 ---VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 546 KKSKASLIRNVPAPFVSFL 564
K + +LI + + L
Sbjct: 553 PKIEENLIC---SKYTDLL 568
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 69/249 (27%), Positives = 97/249 (38%), Gaps = 39/249 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVT--DSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
GFV LV LL+ G V T D D + S L + G + + D+ D
Sbjct: 19 GFVASLLVKLLLQKG-YAVNTTVRD------PDNQKKVSHLLELQELGDLKIFRADLTDE 71
Query: 76 SQIKKVLEGASTVFYVDAT--DLNTDDFYNCYMII--VQGAKNVVTACRECK-VRRLVYN 130
+ + G VF+V AT ++D N MI +QG NV+ AC K V+R++
Sbjct: 72 LSFEAPIAGCDFVFHV-ATPVHFASEDPEN-DMIKPAIQGVVNVMKACTRAKSVKRVILT 129
Query: 131 STADVVFDGSHDIHNG--DET----LTCCWKFQDLM---CDLKAQAEALVL-FA--NNID 178
S+A V D DE + + K AE FA NNID
Sbjct: 130 SSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNID 189
Query: 179 GLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTY----VENV 230
L+T + P+ + G T VP L ++L G M + VE+V
Sbjct: 190 -LIT--VIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246
Query: 231 AHAHVCAAE 239
AH+ AE
Sbjct: 247 CRAHIFVAE 255
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 27/279 (9%), Positives = 67/279 (24%), Gaps = 66/279 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
+GFVG++L L +
Sbjct: 8 AKGFVGKNLKADLTSTTDHHIFEVH------------------------------RQTKE 37
Query: 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMII-VQGAKNVVTACRECKVRRLVYNSTAD 134
+++ L A + ++ +N + + + V +V+ + + S++
Sbjct: 38 EELESALLKADFIVHLAG--VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS- 94
Query: 135 VVFDGSHDIHNGDET---LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
I + + K Q E L+ G R N+F
Sbjct: 95 --------IQATQDNPYGES------------KLQGEQLLREYAEEYGNTVYIYRWPNLF 134
Query: 192 GPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
G ++ + YV+++ A E +
Sbjct: 135 GKWCKPNYNSVIATFCYKIARNEE-IQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIE-- 191
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
+ N+ + + + ++ + +
Sbjct: 192 --NGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD 228
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 46/233 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+L G + + L LL + + + P+ + R +
Sbjct: 9 TILGAAGQIAQXLTATLLTYTDMHITL--------YGRQLKTRIPPEIIDHERVTVIEGS 60
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
++ +++ + A VF M ++V A +RR++ S
Sbjct: 61 FQNPGXLEQAVTNAEVVF-------------VGAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
A + S + E T + + QA ++ L LR + ++
Sbjct: 108 MAGL----SGEFPVALEKWTFDNLPISYVQG-ERQARNVL----RESNLNYTILRLTWLY 158
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV--ENVAHAHVCAAEALD 242
P T + + + V E V A A D
Sbjct: 159 ND--------------PEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAAD 197
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 45/319 (14%), Positives = 93/319 (29%), Gaps = 65/319 (20%)
Query: 6 AIPRTCVVL--NGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSL 60
+P +VL GFV +V +LLE G + R S+ +L
Sbjct: 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR----------SASKLANLQKRWD 56
Query: 61 SSGRAEYHQVDVRDISQ---IKKVLEGASTVFYVDATDLNTDDFYNCYMII--VQGAKNV 115
+ + V D+ + +V++GA+ V ++ A+ ++ + Y+ ++ + G N
Sbjct: 57 AKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHI-ASVVSFSNKYD-EVVTPAIGGTLNA 114
Query: 116 VTACRECK-VRRLVYNSTADVVFDGSHDIHNG--------DETLTCCWKFQDLMCDL--- 163
+ A V+R V S+ ++ E++ +
Sbjct: 115 LRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLW 174
Query: 164 -----KAQAE--ALVLFANNIDGLLTCALRPSNVFGP---------GDTQLVPLLVNLAK 207
K +AE A N A+ P+ G + + L N
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEV 234
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFL 267
+ + ++ H+ + + T + L
Sbjct: 235 SPALALMPPQY-----YVSAVDIGLLHLGCLVL-----PQIERRRVYGTA-GTFDWNTVL 283
Query: 268 SIILEGLGYQRPFIKLPTG 286
+ + P P
Sbjct: 284 ATFRK----LYPSKTFPAD 298
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 56/400 (14%), Positives = 115/400 (28%), Gaps = 100/400 (25%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDSLSSGRAE 66
+ ++L GF+G L R+LE V D T L D + R
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG-----------DLVKHERMH 72
Query: 67 YHQVDVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQG 111
+ + D+ + + A+ Y + +L+ +
Sbjct: 73 FFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELD-----------FEA 121
Query: 112 AKNVVTACRECKVRRL------VYNSTADVVFDGSHDIHNG----------DETLTCCWK 155
+V + + + VY AD FD +
Sbjct: 122 NLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACS------ 175
Query: 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNL 205
K + ++ + ++GL RP N GP G +++V +
Sbjct: 176 --------KQLMDRVI-WGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGH 226
Query: 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN-LEPIKFW 264
G ++ G FTYV++ A + E + G + I N
Sbjct: 227 IVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVAT---GKIYNIGNPNNNFSVR 283
Query: 265 DFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324
+ + +LE + V ++ + G + R
Sbjct: 284 ELANKMLELAAEFPEYADSAKRVK--LVETTSGAYYGNG--------------YQDVQNR 327
Query: 325 TFDCIAAQKHIGYSPVVSLEEGVSSTIQSF-SHLARDSSL 363
+ +G++P + ++ + +++ H+A +L
Sbjct: 328 VPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVADARAL 367
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 40/196 (20%)
Query: 18 GFVGRSLVLRLLELG----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR 73
G + R ++ +L + R P++ + P ++ DV
Sbjct: 33 GQIARHVINQLADKQTIKQTLFAR----------QPAKIHKPYPT-----NSQIIMGDVL 77
Query: 74 DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133
+ + +K+ ++G V+ L +D + A +V+ A + C V+RL++ +
Sbjct: 78 NHAALKQAMQGQDIVYAN----LTGED-------LDIQANSVIAAMKACDVKRLIFVLSL 126
Query: 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193
G +D G + + +A + + GL LRP+ +
Sbjct: 127 -----GIYDEVPGKFVEWNNAVIGEPLKP-FRRAADAIEAS----GLEYTILRPAWLTDE 176
Query: 194 GDTQLVPLLVNLAKPG 209
N G
Sbjct: 177 DIIDYELTSRNEPFKG 192
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 11/114 (9%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
G +G + + + + + + Q+D +
Sbjct: 10 GHLGTHITNQAIANHIDHFHIGVR------NVEKVPDDWRGK-----VSVRQLDYFNQES 58
Query: 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ + +G TV ++ + + + +N+V A ++ V +++
Sbjct: 59 MVEAFKGMDTVVFIPSIIHPSFKR-------IPEVENLVYAAKQSGVAHIIFIG 105
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 50/311 (16%), Positives = 83/311 (26%), Gaps = 65/311 (20%)
Query: 18 GFVGRSLVLRLLELGK------CIVRVTDSTQSLQ------LDPSESNSLLPDSLSSGRA 65
GF+GR LVL LL C+VR + + L++ R
Sbjct: 83 GFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRL 142
Query: 66 EYHQVDVR------DISQIKKVLEGASTVF----------YVDATDLNTDDFYNCYMIIV 109
E D D +++ E + Y + N V
Sbjct: 143 EVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPN-----------V 191
Query: 110 QGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------ 163
G ++ K++ Y STADV D + + +
Sbjct: 192 AGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGT 251
Query: 164 -KAQAEALVLFANNIDGLLTCALRPSNVFGPGD-------TQLVPLLVNLAK-------- 207
K E L+ AN++ L R + + V +V
Sbjct: 252 SKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRS 311
Query: 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN--LEPIKFWD 265
D V VA A A + + + N + I +
Sbjct: 312 FYEPDSEGNRQRAHFDGLPVTFVAEAIAVLG-ARVAGSSLAGFATYHVMNPHDDGIGLDE 370
Query: 266 FLSIILEGLGY 276
++ ++E GY
Sbjct: 371 YVDWLIE-AGY 380
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 35/255 (13%), Positives = 81/255 (31%), Gaps = 45/255 (17%)
Query: 18 GFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD 74
G++GR + L+LG +VR + + ++ L +S + A + D
Sbjct: 14 GYIGRHVAKASLDLGHPTFLLVR----ESTASSNSEKAQLL--ESFKASGANIVHGSIDD 67
Query: 75 ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134
+ + + ++ V + + ++ N++ A +E + + S
Sbjct: 68 HASLVEAVKNVDVVISTVGS------------LQIESQVNIIKAIKEVGTVKRFFPSE-- 113
Query: 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194
D + + ++KA+ + + SN F
Sbjct: 114 ---------FGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEG-----IPYTYVSSNCFAGY 159
Query: 195 DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS-----RMVSVA 249
+ + A P I+G G F E++ +A+D + + +
Sbjct: 160 FLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTF---TIKAVDDPRTLNKTLYLR 216
Query: 250 GMAFFITNLEPIKFW 264
A ++ E + W
Sbjct: 217 LPANTLSLNELVALW 231
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 59/351 (16%), Positives = 109/351 (31%), Gaps = 54/351 (15%)
Query: 18 GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77
GF G L L L +G V L SL + + + D+RD ++
Sbjct: 19 GFKGGWLSLWLQTMG---ATVK----GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNK 71
Query: 78 IKKVLEGA--STVFYVDATDLNTD---DFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ + + VF++ A L + Y V G ++ A R + V N T
Sbjct: 72 LLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT 131
Query: 133 ADVVFDGSHDIHNGDETL----TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCAL 185
+D +D I E + +L + F G +
Sbjct: 132 SDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATV 191
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTK--FIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
R NV G GD L ++ ++ + II + + + +V ++ A+ L +
Sbjct: 192 RAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYT 251
Query: 244 RMVSVAGMAF-FITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
A + F N + + +++ G + + HE
Sbjct: 252 DGAEYAE-GWNFGPNDADATPVKNIVEQMVKYWG----------EGASWQLDGNAHPHEA 300
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
L+ L DC A+ +G+ P +L + +
Sbjct: 301 HYLK-----L---------------DCSKAKMQLGWHPRWNLNTTLEYIVG 331
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 9e-06
Identities = 35/258 (13%), Positives = 75/258 (29%), Gaps = 34/258 (13%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+++ G G++G+ +V + LG + R + + +L G A+
Sbjct: 8 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNI------DKVQMLLYFKQLG-AKLI 60
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + D ++ L+ V A + + + +V A +E +
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHH--------ILEQLKLVEAIKEAGNIKRF 112
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
S F G F D +A A + + +
Sbjct: 113 LPSE----F-GMDPDIMEHALQPGSITFIDKRKVRRAIEAA---------SIPYTYVSSN 158
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH--AHVCAAEALDSRMV 246
G L L ++ P I G G + ++V ++ +
Sbjct: 159 MFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM 218
Query: 247 SVAGMAFFITNLEPIKFW 264
+ ++ E I+ W
Sbjct: 219 YIRPPMNILSQKEVIQIW 236
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 56/392 (14%), Positives = 114/392 (29%), Gaps = 87/392 (22%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
++L GF+G L RLL V LD + L+ + +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYG--------LDIGSDA--ISRFLNHPHFHFVEG 52
Query: 71 DVRDISQIKKVLEG-----------ASTVFY----VDATDLNTDDFYNCYMIIVQGAKNV 115
D+ S+ + A+ + Y + +L+ + +
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELD-----------FEENLRI 101
Query: 116 VTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC---------WKFQDLMC--DLK 164
+ C + + +R+++ ST++V G DE + W K
Sbjct: 102 IRYCVKYR-KRIIFPSTSEVY--GMCSDKYFDEDHSNLIVGPVNKPRW------IYSVSK 152
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGP----------GDTQLVPLLVNLAKPGWTKFI 214
+ ++ +GL RP N GP G ++ + L+ G +
Sbjct: 153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKL 212
Query: 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEG 273
I G+ FT + + A +++ G I N E + ++L
Sbjct: 213 IDGGKQKRCFTDIRDGIEALY---RIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS 269
Query: 274 LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQK 333
P + ++ S S R A +
Sbjct: 270 FEKHPLRHHFPPFAGFRVV----------------ESSSYYGKGYQDVEHRKPSIRNAHR 313
Query: 334 HIGYSPVVSLEEGVSSTIQSF-SHLARDSSLA 364
+ + P + ++E + T+ F + +
Sbjct: 314 CLDWEPKIDMQETIDETLDFFLRTVDLTDKPS 345
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 44/261 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L G +GR +V ++ G + T + ++ + D+ S + D
Sbjct: 6 LILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI--DNYQSLGVILLEGD 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + K ++ V + A ++++ ++ A +E + + S
Sbjct: 64 INDHETLVKAIKQVDIV--ICAAG----------RLLIEDQVKIIKAIKEAGNVKKFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS--- 188
D + + + KA ++ G+ L
Sbjct: 112 -----------EFGLDVDRHDAVEPVRQVFEEKASIRRVIEAE----GVPYTYLCCHAFT 156
Query: 189 NVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS----- 243
F Q + + I+G G + +V A +
Sbjct: 157 GYFLRNLAQ--LDATDPPRDKVV--ILGDGNVKGAYVTEADVGTF---TIRAANDPNTLN 209
Query: 244 RMVSVAGMAFFITNLEPIKFW 264
+ V + ++T E I W
Sbjct: 210 KAVHIRLPKNYLTQNEVIALW 230
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 27/131 (20%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+ V G +G ++ LL+ IVR + ++++L
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR----------NVEKASTLADQG----- 46
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
E D ++K G S + ++ + ++ NVV A R+ V
Sbjct: 47 VEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDNTL-------LIVQHANVVKAARDAGV 99
Query: 125 RRLVYNSTADV 135
+ + Y A
Sbjct: 100 KHIAYTGYAFA 110
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 26/133 (19%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
+T V+ G G SL+ +G + V + +L +
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPN 52
Query: 65 AEYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC- 122
Q + + + + + EGA F T D + K++ A +
Sbjct: 53 VTLFQGPLLNNVPLMDTLFEGAHLAFIN--TTSQAGD-------EIAIGKDLADAAKRAG 103
Query: 123 KVRRLVYNSTADV 135
++ +Y+S D
Sbjct: 104 TIQHYIYSSMPDH 116
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 179 GLLTCALRPSNVFGP-GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ +LR +NV GP +P K G F + + DF + + +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFLAIADLS 231
Query: 238 AEA 240
+
Sbjct: 232 LQE 234
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 30/134 (22%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G G +G +L+ L G I+ + D+ ++G+ E
Sbjct: 25 ITGGAGCLGSNLIEHWLPQGHEILVI-------------------DNFATGKREVLPPVA 65
Query: 67 ---YHQVDVRDISQIKKVLEGAS--TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+ V D +++ + V + A + DD+ VQG+ NV A +
Sbjct: 66 GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASK 125
Query: 122 CKVRRLVYNSTADV 135
V+RL+ TA
Sbjct: 126 AGVKRLLNFQTALC 139
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 73/385 (18%), Positives = 117/385 (30%), Gaps = 97/385 (25%)
Query: 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR 64
E + ++ G GFVG L +L+ G + V D+ +GR
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGR 64
Query: 65 A------------EYHQVDVRD-----ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMI 107
E DV + + QI + AS Y+ +
Sbjct: 65 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMY-------NPIKTLKT 117
Query: 108 IVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET---LTCCWKFQDLMCDLK 164
G N++ + R L+ ST++V G ++H E + + K
Sbjct: 118 NTIGTLNMLGLAKRVGAR-LLLASTSEVY--GDPEVHPQSEDYWGHVNPIGPRACYDEGK 174
Query: 165 AQAEALVLFANNIDGLLTCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGEN 220
AE + +G+ R N FGP D ++V + A G + GSG
Sbjct: 175 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ 234
Query: 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF 280
F YV ++ L + M S + N E +F +I +G
Sbjct: 235 TRAFQYVSDLV-------NGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEI 287
Query: 281 IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS---RTRTFDCIAAQKHIGY 337
L A + R D A+ +G+
Sbjct: 288 QFLS----------------------------------EAQDDPQKRKPDIKKAKLMLGW 313
Query: 338 SPVVSLEEGVSSTIQSFSHLARDSS 362
PVV LEEG++ I F +
Sbjct: 314 EPVVPLEEGLNKAIHYFRKELEYQA 338
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 34/134 (25%)
Query: 18 GFVGRSLVLRLLELGK-----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
G +G ++ L++ IVR +P+++ +L Q D
Sbjct: 9 GQLGHYVIESLMKTVPASQIVAIVR----------NPAKAQALAAQG-----ITVRQADY 53
Query: 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS- 131
D + + L+G + + ++++ +NV+ A + V+ + Y S
Sbjct: 54 GDEAALTSALQGVEKLLLISSSEVGQR---------APQHRNVINAAKAAGVKFIAYTSL 104
Query: 132 ----TADVVFDGSH 141
T+ + H
Sbjct: 105 LHADTSPLGLADEH 118
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 30/260 (11%), Positives = 69/260 (26%), Gaps = 43/260 (16%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
++ GF+G+ + L+ + + R S S + + +L A
Sbjct: 14 LIAGATGFIGQFVATASLDAHRPTYILARPGPR--------SPSKAKIFKALEDKGAIIV 65
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
+ + ++K+L+ V + + +V A + +
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVVSTVGGES----------ILDQIALVKAMKAVGTIKRF 115
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN--IDGLLTCALR 186
S + + + G + + L ++ N +
Sbjct: 116 LPSEFGHDVNRADPVEPGLNMYREKRRVRQL---VEESGIPFTYICCNSIASWPYYNNIH 172
Query: 187 PSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS--R 244
PS V P D I G G + F ++ + + + + +
Sbjct: 173 PSEVLPPTDFFQ---------------IYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNK 217
Query: 245 MVSVAGMAFFITNLEPIKFW 264
V + E W
Sbjct: 218 SVHFRPSCNCLNINELASVW 237
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 586 | |||
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.98 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.98 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.95 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.94 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.93 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.91 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.91 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.9 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.89 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.89 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.88 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.88 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.88 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.88 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.88 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.87 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.87 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.86 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.86 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.86 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.86 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.86 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.86 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.85 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.85 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.85 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.85 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.84 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.84 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.84 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.84 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.84 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.84 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.84 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.84 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.84 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.84 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.84 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.84 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.83 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.83 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.83 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.83 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.83 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.83 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.83 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.83 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.83 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.83 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.83 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.83 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.83 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.83 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.82 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.82 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.82 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.82 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.82 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.82 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.82 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.82 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.82 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.82 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.82 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.82 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.82 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.82 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.82 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.81 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.81 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.81 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.81 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.81 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.81 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.81 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.81 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.81 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.81 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.81 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.81 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.81 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.8 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.8 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.8 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.8 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.8 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.8 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.8 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.8 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.8 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.8 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.8 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.8 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.8 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.8 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.8 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.8 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.8 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.8 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.8 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.8 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.8 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.8 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.79 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.79 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.79 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.79 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.79 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.79 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.79 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.79 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.79 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.79 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.79 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.79 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.79 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.79 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.79 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.79 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.79 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.78 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.78 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.78 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.78 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.78 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.78 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.78 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.78 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.78 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.78 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.78 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.78 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.78 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.78 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.77 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.77 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.77 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.77 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.77 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.77 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.77 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.77 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.76 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.76 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.76 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.76 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.76 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.76 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.76 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.76 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.76 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.76 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.76 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.75 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.75 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.75 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.75 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.75 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.74 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.74 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.74 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.74 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.74 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.74 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.74 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.74 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.74 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.74 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.74 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.74 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.73 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.73 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.73 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.73 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.73 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.73 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.73 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.72 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.72 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.72 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.72 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.72 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.71 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.71 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.71 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.7 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.7 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.7 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.7 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.7 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.69 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.69 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.69 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.69 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.67 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.66 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.66 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.66 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.65 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.65 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.65 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.64 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.64 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.62 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.62 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.62 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.6 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.59 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.58 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.57 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.57 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.57 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.56 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.55 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.54 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.51 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.5 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.5 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.46 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.45 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.4 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.33 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.09 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.09 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.09 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.07 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.06 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.97 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.96 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.92 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.91 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.86 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.78 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.66 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.65 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.65 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.38 | |
| 2ko2_A | 79 | Reticulon-4; NOGO, membrane protein, peripheral, D | 98.32 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.26 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.16 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.1 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.08 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.07 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.05 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.98 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.95 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.94 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.94 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.88 | |
| 2g31_A | 60 | Reticulon-4; NOGO, helix, signaling protein; NMR { | 97.78 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.78 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.77 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.74 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.72 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.61 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.32 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.32 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.29 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.19 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.17 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.04 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.04 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.95 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.93 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.93 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.92 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.87 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.84 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 96.77 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.74 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.6 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.57 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.54 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.5 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.48 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.47 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.42 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.4 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.29 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.22 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.16 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.16 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.14 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.06 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.05 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.0 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 95.98 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.92 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.92 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 95.92 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.92 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.92 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.8 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 95.76 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.75 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.74 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.7 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.65 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 95.6 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.59 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.57 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.52 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 95.45 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.43 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.37 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.34 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.33 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.33 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.28 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.27 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.16 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.15 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.1 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.1 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.99 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 94.92 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.91 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 94.86 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.78 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.72 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.66 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.66 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.59 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 94.58 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.51 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.47 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.43 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.34 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.34 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.24 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 94.23 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 94.2 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.18 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 93.96 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.95 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 93.95 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.93 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.83 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 93.7 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 93.69 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 93.62 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.57 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 93.55 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.53 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 93.46 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 93.33 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.27 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.25 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 93.23 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 93.23 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 93.14 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.1 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.04 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.03 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.02 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.02 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.98 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 92.9 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 92.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 92.75 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 92.72 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 92.68 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.53 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 92.49 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 92.43 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.31 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.29 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 92.25 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.24 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 92.21 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 92.19 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.16 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 92.04 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 91.99 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 91.96 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 91.92 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 91.91 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 91.89 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 91.87 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 91.78 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 91.74 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.64 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 91.5 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 91.48 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.44 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 91.43 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 91.32 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 91.22 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 91.1 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 91.05 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 91.04 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 90.97 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 90.9 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 90.78 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 90.77 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 90.72 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 90.7 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 90.64 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.55 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.51 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 90.45 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 90.42 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.35 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.32 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 90.31 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 90.2 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.11 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 90.1 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 89.96 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 89.91 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 89.86 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.84 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.71 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 89.71 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 89.71 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 89.69 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 89.68 |
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=369.36 Aligned_cols=296 Identities=16% Similarity=0.156 Sum_probs=250.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|||||||||||++++++|+++| ++|+++ .|.+... . + .+++++.+|+. .+++.++++++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~--------~r~~~~~---~-~--~~~~~~~~Dl~-~~~~~~~~~~~d~ 65 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIIL--------TRSIGNK---A-I--NDYEYRVSDYT-LEDLINQLNDVDA 65 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESCCC-----------CCEEEECCCC-HHHHHHHTTTCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEE--------eCCCCcc---c-C--CceEEEEcccc-HHHHHHhhcCCCE
Confidence 5899999999999999999999999 599994 4442211 1 1 27899999999 9999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+..... ++...+++|+.++.+++++|++++++||||+||.++||.. ...+.+|+. +..|.++|+.+|..+
T Consensus 66 Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 66 VVHLAATRGSQ-GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDE--TSLPWNEKE--LPLPDLMYGVSKLAC 140 (311)
T ss_dssp EEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCG--GGCSBCTTS--CCCCSSHHHHHHHHH
T ss_pred EEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCC--CCCCCCCCC--CCCCCchhHHHHHHH
Confidence 99999987544 7888999999999999999999999999999999999743 334678877 458899999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~ 245 (586)
|++++.++.+.|++++++||+++|||+.. ..++.++..+..|+++.+++++++.++|+|++|+|++++.+++ .
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~-----~ 215 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALK-----Q 215 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTT-----C
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHh-----c
Confidence 99999998878999999999999999877 6788899999999988888999999999999999999999887 2
Q ss_pred ccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcccee
Q 007866 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325 (586)
Q Consensus 246 ~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (586)
+. .+++||+++++++|+.|+++.+.+.+|.+.+....|.+ .+ .......
T Consensus 216 ~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~----------------------~~--------~~~~~~~ 264 (311)
T 3m2p_A 216 EK-VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPN----------------------AN--------EGIHSSY 264 (311)
T ss_dssp TT-CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSS----------------------BC--------CSCCCBC
T ss_pred CC-CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCC----------------------CC--------CCcCcee
Confidence 33 78899999999999999999999999988665544321 00 0113567
Q ss_pred echhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 326 FDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 326 ~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+|++|++++|||+|+++++++++++++|+++..+.
T Consensus 265 ~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 265 MDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDV 299 (311)
T ss_dssp BCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC----
T ss_pred cCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcccC
Confidence 89999999999999999999999999999876554
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=373.46 Aligned_cols=309 Identities=17% Similarity=0.172 Sum_probs=252.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+.+|+|||||||||||++++++|+++|+ ++|++.|+... .+.. ..+......++++++.+|+.|.+++.+++++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~---~~~~--~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY---SGNL--NNVKSIQDHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCT---TCCG--GGGTTTTTCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccc---ccch--hhhhhhccCCCeEEEEcCCCCHHHHHHHHhh
Confidence 4568999999999999999999999983 37777555321 1111 1122223346899999999999999999987
Q ss_pred --CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 85 --ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 85 --~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
+|+|||+|+... ...++...+++|+.|+.+++++|+++|++||||+||.++||... ...+.+|+.| ..|.++
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~-~~~~~~E~~~--~~p~~~ 173 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLG-KTGRFTEETP--LAPNSP 173 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCC-SSCCBCTTSC--CCCCSH
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCC-cCCCcCCCCC--CCCCCh
Confidence 999999999873 34678899999999999999999999999999999999997543 3346788874 588999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
|+.+|..+|++++.++.++|++++++||+.+|||+.. ..++.++..+..|+++.+++++++.++|+|++|+|++++.+
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999998777999999999999999864 57788889899999888999999999999999999999999
Q ss_pred HHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccC-CHHHHHHHHHHHHHHHHHhccccCCCCCCcHHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL-PTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~v-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
++. + ..|++||+++++++|+.|+++.+.+.+|.+.+.+.. +.. +.
T Consensus 254 ~~~-----~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-----------------------~~----- 299 (346)
T 4egb_A 254 LHK-----G-RVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDR-----------------------LG----- 299 (346)
T ss_dssp HHH-----C-CTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC-------------------------C-----
T ss_pred Hhc-----C-CCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCC-----------------------CC-----
Confidence 983 3 378899999999999999999999999987543221 100 00
Q ss_pred HHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 317 ~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
....+.+|++|++++|||+|+++++|+|+++++||+++..
T Consensus 300 ---~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 300 ---HDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp ---CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHH
T ss_pred ---CcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 0134568999999999999999999999999999998654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=374.97 Aligned_cols=313 Identities=21% Similarity=0.248 Sum_probs=252.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCC---CCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLS---SGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~---~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++|+|||||||||||++++++|+++| ++|+++++... +.... ..+..... ..+++++.+|+.|.+++.+++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 98 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFST----GHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM 98 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS----CCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCC----CchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh
Confidence 57899999999999999999999999 59999554321 00000 00000000 057899999999999999999
Q ss_pred cCCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 83 EGASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 83 ~~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
+++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+.| ..|.++
T Consensus 99 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~--~~p~~~ 174 (351)
T 3ruf_A 99 KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHP--ALPKVEENI--GNPLSP 174 (351)
T ss_dssp TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC--CSSBCTTCC--CCCCSH
T ss_pred cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCC--CCCCccCCC--CCCCCh
Confidence 99999999999752 34567889999999999999999999999999999999997543 346788874 588999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
|+.+|..+|++++.++++.|++++++||+++|||+.. .+++.++..+.+|+++.++++|++.++|+|++|+|++
T Consensus 175 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a 254 (351)
T 3ruf_A 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQM 254 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHH
Confidence 9999999999999988777999999999999999764 4577888888888888899999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
++.+++. .+...+++||+++++++|+.|+++.+.+.+|.+......+.. ... ..+
T Consensus 255 ~~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~---------------~~~---~~~--- 309 (351)
T 3ruf_A 255 NILSALA----KDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK---------------YRE---FRS--- 309 (351)
T ss_dssp HHHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----E---------------EEC---CCT---
T ss_pred HHHHHhh----ccccCCCEEEeCCCCcccHHHHHHHHHHHhCccccccccccc---------------ccC---CCC---
Confidence 9998872 135678999999999999999999999999985443222211 000 000
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
. ......+|++|++++|||+|+++++++++++++||+++.
T Consensus 310 -~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 310 -G----DVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349 (351)
T ss_dssp -T----CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred -C----ccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 0 013567899999999999999999999999999998864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=371.15 Aligned_cols=296 Identities=20% Similarity=0.189 Sum_probs=252.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|||||||||||++++++|+++| ++|+++ .|.+.. .+++++.+|+.|.+++.++++++
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~--------~r~~~~---------~~~~~~~~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGF--------DLRPSG---------TGGEEVVGSLEDGQALSDAIMGV 78 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEE--------ESSCCS---------SCCSEEESCTTCHHHHHHHHTTC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEE--------eCCCCC---------CCccEEecCcCCHHHHHHHHhCC
Confidence 456899999999999999999999999 599994 443331 46789999999999999999999
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|+|||+|+... ...+....+++|+.++.+++++|++.+++||||+||.++||.......+.+|+. +..|.++|+.+|
T Consensus 79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~--~~~~~~~Y~~sK 156 (347)
T 4id9_A 79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDH--PLCPNSPYGLTK 156 (347)
T ss_dssp SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTS--CCCCCSHHHHHH
T ss_pred CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCC--CCCCCChHHHHH
Confidence 99999999873 333458899999999999999999999999999999999987545556788887 457899999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcc-------------cCCC-------------CCcHHHHHHHhcCCCceEEEcCC
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVF-------------GPGD-------------TQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~-------------G~~~-------------~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
..+|++++.++.+.|++++++||+++| ||+. ...++.++..+..|+++.+++++
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 999999999987789999999999999 8862 45677788888999988899999
Q ss_pred Cccccc----cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHH
Q 007866 219 ENMSDF----TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294 (586)
Q Consensus 219 ~~~~~~----i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~ 294 (586)
++.++| +|++|+|++++.+++ .+...+++||+++++++|+.|+++.+.+.+|.+.+...+|.+
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~-----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-------- 303 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALD-----HPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD-------- 303 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHH-----CGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC--------
T ss_pred CcccCCccCcEeHHHHHHHHHHHhc-----CcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc--------
Confidence 999999 999999999999998 344668999999999999999999999999987665444321
Q ss_pred HHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+ ....+|++|++++|||+|+++++++++++++|++++...
T Consensus 304 ---------------~-----------~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 304 ---------------G-----------VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp ---------------C-----------CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-
T ss_pred ---------------c-----------cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 1 146789999999999999999999999999999986543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=364.56 Aligned_cols=319 Identities=15% Similarity=0.170 Sum_probs=246.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++|+|||||||||||++++++|+++| ++|+++++ .+.+. ..+...+++++.+|+.|.+++.++++++|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r--------~~~~~---~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d 79 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHR--------PSSQI---QRLAYLEPECRVAEMLDHAGLERALRGLD 79 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEEC--------TTSCG---GGGGGGCCEEEECCTTCHHHHHHHTTTCS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec--------ChHhh---hhhccCCeEEEEecCCCHHHHHHHHcCCC
Confidence 45799999999999999999999999 59999544 33211 11122368999999999999999999999
Q ss_pred EEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCC----CChHH
Q 007866 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF----QDLMC 161 (586)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p----~~~Y~ 161 (586)
+|||+|+... ...++...+++|+.++.+++++|+++|++||||+||.++|+.......+ +|+.| ..| .++|+
T Consensus 80 ~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~~--~~p~~~~~~~Y~ 156 (342)
T 2x4g_A 80 GVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGLF--YDSLPSGKSSYV 156 (342)
T ss_dssp EEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTCC--CSSCCTTSCHHH
T ss_pred EEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCCC--CCccccccChHH
Confidence 9999999763 3457788999999999999999999999999999999999765432234 77774 466 88999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-C-CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-T-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~-~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.+|..+|.+++.++.. |++++++||+.+|||+. . . ++.++..+.+|..+.+ +++.++|+|++|+|++++.+++
T Consensus 157 ~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 157 LCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 9999999999998876 99999999999999986 3 3 6667777777876544 5678999999999999999988
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (586)
. +.. |++||+++++ +|+.|+++.+.+.+|.+.+. .+|.+.....+.+.+++....+ ..++++++....
T Consensus 232 ~-----~~~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 299 (342)
T 2x4g_A 232 R-----GRI-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSG----QLPLLDETAIEV 299 (342)
T ss_dssp H-----SCT-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC--------------------CC
T ss_pred C-----CCC-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhC----CCCCCCHHHHHH
Confidence 3 333 8899999999 99999999999999998777 8999888777776666654443 223333343333
Q ss_pred hccceeechhhHhhccCC-CCCCChHHHHHHHHHHHHHhh
Q 007866 320 ASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~-~p~~~lee~i~~~i~~~~~~~ 358 (586)
+.....+|++|++++||| +| ++++++++++++||+++.
T Consensus 300 ~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 300 MAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp TTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 345678899999999999 99 799999999999998754
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=374.71 Aligned_cols=319 Identities=16% Similarity=0.188 Sum_probs=250.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC-CHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~-d~~~l~~~l~ 83 (586)
++||+|||||||||||++++++|+++ | ++|+++++ .+.+ ........+++++.+|+. |.+.+.++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r--------~~~~--~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDM--------QTDR--LGDLVKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEES--------CCTT--TGGGGGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeC--------Chhh--hhhhccCCCeEEEeCccCCCHHHHHHHhc
Confidence 46789999999999999999999999 8 59999544 3321 112223468999999999 9999999999
Q ss_pred CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc-----CCC
Q 007866 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC-----CWK 155 (586)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~-----~~~ 155 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.| +||||+||.++||.... .+.+|+.+. ...
T Consensus 91 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~--~~~~e~~~~~~~~p~~~ 167 (372)
T 3slg_A 91 KCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCAD--EQFDPDASALTYGPINK 167 (372)
T ss_dssp HCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCC--SSBCTTTCCEEECCTTC
T ss_pred cCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCC--CCCCccccccccCCCCC
Confidence 9999999999873 235778899999999999999999999 99999999999976432 345554421 125
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----------cHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~----------~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
|.++|+.+|..+|++++.++.+ |++++++||+++|||+... +++.++..+.+|+++.++++|++.++|+
T Consensus 168 p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 246 (372)
T 3slg_A 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFT 246 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECE
T ss_pred CCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEE
Confidence 6779999999999999999887 9999999999999998642 6778888888898888999999999999
Q ss_pred chhHHHHHHHHHHHHhhccccc--CCCcEEEEeC-CCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHh
Q 007866 226 YVENVAHAHVCAAEALDSRMVS--VAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKL 302 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~--~~g~~~ni~~-~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~ 302 (586)
|++|+|++++.+++ .+. ..+++||+++ ++++|+.|+++.+.+.+|.+.+....|... .+.
T Consensus 247 ~v~Dva~a~~~~~~-----~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~------------~~~ 309 (372)
T 3slg_A 247 YVDDGISALMKIIE-----NSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRV------------KLV 309 (372)
T ss_dssp EHHHHHHHHHHHHH-----CGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTC------------CEE
T ss_pred EHHHHHHHHHHHHh-----cccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccc------------eee
Confidence 99999999999998 333 6789999999 489999999999999999775533222100 000
Q ss_pred ccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 303 GLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.. ........ .........+|++|++++|||+|+++++++|+++++||+++...
T Consensus 310 ~~---~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 363 (372)
T 3slg_A 310 ET---TSGAYYGN-GYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVAD 363 (372)
T ss_dssp EC-----------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHHH
T ss_pred ec---cccccccC-CccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00000000 00012356789999999999999999999999999999876543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=358.20 Aligned_cols=302 Identities=21% Similarity=0.220 Sum_probs=241.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
||+|||||||||||++++++|+++| +.|.+ ..|..... .....+++++.+|+.| +++.++++++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~--------~~~~~~~~----~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~ 66 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVI--------DNLSSGNE----EFVNEAARLVKADLAA-DDIKDYLKGAEE 66 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEE--------CCCSSCCG----GGSCTTEEEECCCTTT-SCCHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEE--------EcCCCCCh----hhcCCCcEEEECcCCh-HHHHHHhcCCCE
Confidence 4789999999999999999999999 46665 22222211 1123578999999999 899999999999
Q ss_pred EEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 88 VFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 88 Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|||+|+.. ....++...+++|+.++.+++++|++.+++|+||+||.++||... ..+.+|+. +..|.++|+.+|
T Consensus 67 vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~--~~~~~~~Y~~sK 142 (313)
T 3ehe_A 67 VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAK--VIPTPEDY--PTHPISLYGASK 142 (313)
T ss_dssp EEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCS--SSSBCTTS--CCCCCSHHHHHH
T ss_pred EEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCC--CCCCCCCC--CCCCCCHHHHHH
Confidence 99999975 246778999999999999999999999999999999999997543 34677877 457889999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCC-CceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
..+|.+++.++.+.|++++++||+++|||+.. ..++.++..+..+ .++.++++|++.++|+|++|+|++++.+++
T Consensus 143 ~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~--- 219 (313)
T 3ehe_A 143 LACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLR--- 219 (313)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhc---
Confidence 99999999998878999999999999999765 4566666665555 566788999999999999999999998887
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
+...+++||+++++++|+.|+++.+.+.+|.+.+....|... ..+ .. ..
T Consensus 220 ---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~~----~~----~~ 268 (313)
T 3ehe_A 220 ---GDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDR--------------------GWK----GD----VP 268 (313)
T ss_dssp ---CCSSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC---------------------------------------
T ss_pred ---cCCCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCcc--------------------CCc----cc----cc
Confidence 345678999999999999999999999999875432222100 000 00 12
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhccc
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDSS 362 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~~ 362 (586)
...+|++|++ +|||+|+++++|+|+++++|++++.....
T Consensus 269 ~~~~d~~k~~-~lG~~p~~~~~e~l~~~~~~~~~~~~~~~ 307 (313)
T 3ehe_A 269 VMLLSIEKLK-RLGWKPRYNSEEAVRMAVRDLVEDLDEEG 307 (313)
T ss_dssp -CCBCCHHHH-HHTCCCSCCHHHHHHHHHHHHHHHHHC--
T ss_pred eeccCHHHHH-HcCCCCCCCHHHHHHHHHHHHHhCccccc
Confidence 3567999996 49999999999999999999999877654
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=363.54 Aligned_cols=308 Identities=20% Similarity=0.195 Sum_probs=248.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh--cCCcEEEEecCCcccccC--CCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLE--LGKCIVRVTDSTQSLQLD--PSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~--~g~~~V~~~d~~~~~~l~--r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+|+||||||+||||++++++|++ +| ++|+++|+....... +..........+...++.++.+|+.|.+++.++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 86 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL 86 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh
Confidence 4578999999999999999999999 89 599997664320000 000000001112345679999999999999999
Q ss_pred -hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 82 -LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 82 -l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
..++|+|||+||... ...+++..+++|+.|+.+++++|++.+++ |||+||.++||.... +.+|+. +..|.++
T Consensus 87 ~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~---~~~E~~--~~~p~~~ 160 (362)
T 3sxp_A 87 EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKA---PNVVGK--NESPENV 160 (362)
T ss_dssp TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCS---SBCTTS--CCCCSSH
T ss_pred hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCC---CCCCCC--CCCCCCh
Confidence 789999999999763 46788999999999999999999999986 999999999975433 678877 4588999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
|+.||..+|.+++.++.+ ++++++||+++|||+.. ..++.++..+..|.++.++++|++.++|+|++|+|++
T Consensus 161 Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a 238 (362)
T 3sxp_A 161 YGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA 238 (362)
T ss_dssp HHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHH
Confidence 999999999999999875 89999999999999864 5677888888899988888999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
++.+++ ....| +||+++++++|+.|+++.+.+.+| +.+....|...
T Consensus 239 i~~~~~------~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~-------------------------- 284 (362)
T 3sxp_A 239 NVKAMK------AQKSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY-------------------------- 284 (362)
T ss_dssp HHHHTT------CSSCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-----------------------------
T ss_pred HHHHHh------cCCCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCC--------------------------
Confidence 999887 23456 999999999999999999999999 65544444220
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
........+|++|++++|||+|+++++++++++++|+++....
T Consensus 285 ----~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 285 ----AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp --------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred ----cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 0112356789999999999999999999999999999876544
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=358.36 Aligned_cols=305 Identities=24% Similarity=0.294 Sum_probs=242.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|||||||||||++++++|+++|+ +|++++ |.+... ......+++++.+|+.|.+ +.+++++ |+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~--------r~~~~~---~~~~~~~~~~~~~Dl~d~~-~~~~~~~-d~v 66 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVD--------NLSSGR---REFVNPSAELHVRDLKDYS-WGAGIKG-DVV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEC--------CCSSCC---GGGSCTTSEEECCCTTSTT-TTTTCCC-SEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-EEEEEe--------CCCCCc---hhhcCCCceEEECccccHH-HHhhcCC-CEE
Confidence 6899999999999999999999994 999954 433211 1112457899999999998 8888888 999
Q ss_pred EEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 89 FYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 89 ih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
||+|+.. ....++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+. +..|.++|+.+|.
T Consensus 67 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~--~~~~~~e~~--~~~p~~~Y~~sK~ 142 (312)
T 3ko8_A 67 FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDA--DVIPTPEEE--PYKPISVYGAAKA 142 (312)
T ss_dssp EECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--SSSSBCTTS--CCCCCSHHHHHHH
T ss_pred EECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCC--CCCCCCCCC--CCCCCChHHHHHH
Confidence 9999975 24567889999999999999999999999999999999999754 334677876 4578999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCC-CceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPG-WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g-~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
.+|.+++.++.+.|++++++||+++|||+.. ..+..++..+..+ ..+.+++++++.++|+|++|+|++++.+++.+.
T Consensus 143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~- 221 (312)
T 3ko8_A 143 AGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE- 221 (312)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhcc-
Confidence 9999999998777999999999999999865 4566666666555 566788999999999999999999999998421
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
.+...+++||+++++++|+.|+++.+.+.+|.+.+...+|..... .+ .+ .....
T Consensus 222 -~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~------------~~-----~~--------~~~~~ 275 (312)
T 3ko8_A 222 -EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDG------------RG-----WP--------GDVKY 275 (312)
T ss_dssp -HSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC-----------------------------------CCCSE
T ss_pred -ccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccc------------cC-----CC--------CCccc
Confidence 134667899999999999999999999999987655554432100 00 00 00124
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
..+|++|++++|||+|+++++|+++++++|++++.
T Consensus 276 ~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 276 MTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp ECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999998864
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=358.39 Aligned_cols=306 Identities=19% Similarity=0.227 Sum_probs=245.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCC---CCCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDS---LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~---l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++|+||||||+||||++++++|+++| ++|+++++ ...... .... ....++.++.+|+.|.+++.+++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADN--------LVNSKREAIARIEKITGKTPAFHETDVSDERALARIF 74 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC--------CSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEec--------CCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHH
Confidence 46899999999999999999999999 49999544 332110 0000 01346889999999999999999
Q ss_pred c--CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 83 E--GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 83 ~--~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+ ++|+|||+|+... ...++...+++|+.++.+++++|++.+++++||+||.++||.. ...+.+|+.| ..|.
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~--~~~~~~e~~~--~~~~ 150 (341)
T 3enk_A 75 DAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVP--ERSPIDETFP--LSAT 150 (341)
T ss_dssp HHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSC--SSSSBCTTSC--CBCS
T ss_pred hccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCC--CCCCCCCCCC--CCCC
Confidence 8 8999999999863 3456678999999999999999999999999999999999643 3446788774 5788
Q ss_pred ChHHHHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCC------------CCcHHHHHHHhcC-CCceEEEc------C
Q 007866 158 DLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGD------------TQLVPLLVNLAKP-GWTKFIIG------S 217 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~g-l~~~ilRp~~v~G~~~------------~~~~~~l~~~~~~-g~~~~i~g------~ 217 (586)
++|+.||..+|++++.++.+.+ ++++++||+++|||+. ..+++.+.+.... ..++.++| +
T Consensus 151 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (341)
T 3enk_A 151 NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPD 230 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTT
T ss_pred ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCC
Confidence 9999999999999999876655 9999999999999964 2345555554433 35566777 8
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~ 297 (586)
|++.++|+|++|+|++++.+++.+. +...+++||+++++++|+.|+++.+.+.+|.+.+....|...
T Consensus 231 g~~~~~~i~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------- 297 (341)
T 3enk_A 231 GTGVRDYIHVVDLARGHIAALDALE---RRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRP---------- 297 (341)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHH---HHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCT----------
T ss_pred CCeeEeeEEHHHHHHHHHHHHHhhh---cCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCC----------
Confidence 8999999999999999999988421 245688999999999999999999999999876654443110
Q ss_pred HHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.. .....+|++|++++|||+|+++++|+++++++||+++..
T Consensus 298 ----------~~-----------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 298 ----------GD-----------VAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp ----------TC-----------CSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred ----------CC-----------ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 00 124678999999999999999999999999999998754
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=361.30 Aligned_cols=303 Identities=19% Similarity=0.168 Sum_probs=250.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+||+||||||+||||++++++|+++| ++|+++++. +.... .....+++++.+|+.|.+++.++++++|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~~---~~~~~~v~~~~~Dl~d~~~~~~~~~~~d 95 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWK--------KNEHM---TEDMFCDEFHLVDLRVMENCLKVTEGVD 95 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------CCSSS---CGGGTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECC--------Cccch---hhccCCceEEECCCCCHHHHHHHhCCCC
Confidence 57899999999999999999999999 599995543 22110 1112468999999999999999999999
Q ss_pred EEEEcccCCCC----CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC---CCCCCCCCcccCCCCCCh
Q 007866 87 TVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH---DIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 87 ~Vih~aa~~~~----~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~---~~~~~~E~~p~~~~p~~~ 159 (586)
+|||+|+.... ..++...+++|+.++.+++++|++++++||||+||.++|+.... ...+.+|+.+.+..|.++
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~ 175 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 175 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCCh
Confidence 99999997632 56788999999999999999999999999999999999975322 123467776545578899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCc-eEEEcCCCccccccchhHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva~ 232 (586)
|+.+|..+|.+++.++.+.|++++++||+.+|||+... .++.++..+..+.+ +.+++++++.++|+|++|+|+
T Consensus 176 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ 255 (379)
T 2c5a_A 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVE 255 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHH
Confidence 99999999999999877679999999999999997642 56777777766665 678899999999999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+++.+++ .+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+ .
T Consensus 256 ai~~~l~-----~~--~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------------------------~- 303 (379)
T 2c5a_A 256 GVLRLTK-----SD--FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP------------------------E- 303 (379)
T ss_dssp HHHHHHH-----SS--CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC------------------------C-
T ss_pred HHHHHhh-----cc--CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC------------------------C-
Confidence 9999988 22 56799999999999999999999999987665444421 0
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
......+|++|++++|||+|+++++++++++++|++++...
T Consensus 304 -------~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 344 (379)
T 2c5a_A 304 -------GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEK 344 (379)
T ss_dssp -------CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred -------CcccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHhh
Confidence 01245789999999999999999999999999999887554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-43 Score=356.52 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=241.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG- 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~- 84 (586)
++||+|||||||||||++++++|+++|+ . .. . ....++.+.+|+.|.+++.+++++
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~----~---------~~--~--------~~~~~~~~~~D~~d~~~~~~~~~~~ 60 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG----L---------PG--E--------DWVFVSSKDADLTDTAQTRALFEKV 60 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC----C---------TT--C--------EEEECCTTTCCTTSHHHHHHHHHHS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC----c---------cc--c--------cccccCceecccCCHHHHHHHHhhc
Confidence 4679999999999999999999999994 0 00 0 001234457899999999999987
Q ss_pred -CCEEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc--CCCCC
Q 007866 85 -ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ 157 (586)
Q Consensus 85 -~D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~--~~~p~ 157 (586)
+|+|||+|+... ...++...+++|+.|+.+++++|++.+++||||+||.++||.. ...+.+|+.+. +..|.
T Consensus 61 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~--~~~~~~E~~~~~~~~~p~ 138 (319)
T 4b8w_A 61 QPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDK--TTYPIDETMIHNGPPHNS 138 (319)
T ss_dssp CCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSS--CCSSBCGGGGGBSCCCSS
T ss_pred CCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCC--CCCCccccccccCCCCCC
Confidence 999999999863 3567889999999999999999999999999999999999653 34467887643 34555
Q ss_pred C-hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHH----hcCCCceEEEcCCCccccccc
Q 007866 158 D-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNL----AKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 158 ~-~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~----~~~g~~~~i~g~g~~~~~~i~ 226 (586)
+ +|+.+|..+|++++.++++.|++++++||+++|||+.. ..++.++.. +..|+++.++++|++.++|+|
T Consensus 139 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 218 (319)
T 4b8w_A 139 NFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIY 218 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEe
Confidence 5 69999999999999988778999999999999999864 356666665 778888889999999999999
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcccc
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~ 306 (586)
++|+|++++.+++.. +...+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 219 v~Dva~a~~~~~~~~----~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-------------------- 274 (319)
T 4b8w_A 219 SLDLAQLFIWVLREY----NEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-------------------- 274 (319)
T ss_dssp HHHHHHHHHHHHHHC----CCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS--------------------
T ss_pred HHHHHHHHHHHHhcc----ccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC--------------------
Confidence 999999999999831 33457799999999999999999999999987654433210
Q ss_pred CCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+. ......+|++|++++|||+|.++++++++++++||+++..
T Consensus 275 ---~~--------~~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 275 ---SD--------GQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp ---CC--------CCSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred ---Cc--------CcccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 00 0023568999999999999999999999999999998653
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=352.72 Aligned_cols=303 Identities=19% Similarity=0.254 Sum_probs=243.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
||+||||||+||||++++++|+++| ++|+++++.. ... ...+. .+++++.+|+.|.+++.++++ ++
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~--~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 68 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQ--------TGH--EDAIT-EGAKFYNGDLRDKAFLRDVFTQENI 68 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCS--------SCC--GGGSC-TTSEEEECCTTCHHHHHHHHHHSCE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCC--------cCc--hhhcC-CCcEEEECCCCCHHHHHHHHhhcCC
Confidence 5799999999999999999999999 5999955432 110 01111 368999999999999999998 89
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+.. ...+.+|+.| ..|.++|+.
T Consensus 69 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~--~~~~~~E~~~--~~~~~~Y~~ 144 (330)
T 2c20_A 69 EAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEV--DVDLITEETM--TNPTNTYGE 144 (330)
T ss_dssp EEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSC--SSSSBCTTSC--CCCSSHHHH
T ss_pred CEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCC--CCCCCCcCCC--CCCCChHHH
Confidence 99999999863 2346788999999999999999999999999999999999753 2346788874 478899999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-----------CCcHHHHHHHhc-CCCceEEEc------CCCccccc
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLVNLAK-PGWTKFIIG------SGENMSDF 224 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~-----------~~~~~~l~~~~~-~g~~~~i~g------~g~~~~~~ 224 (586)
+|..+|++++.++.+.|++++++||+++|||+. ..+++.+.+.+. .+..+.+++ +|++.++|
T Consensus 145 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 224 (330)
T 2c20_A 145 TKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224 (330)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEee
Confidence 999999999999877899999999999999963 234555665554 344566776 67889999
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
+|++|+|++++.+++... ....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 225 v~v~Dva~a~~~~~~~~~---~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------------------ 283 (330)
T 2c20_A 225 IHVEDLVAAHFLGLKDLQ---NGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRR------------------ 283 (330)
T ss_dssp EEHHHHHHHHHHHHHHHH---TTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCC------------------
T ss_pred EeHHHHHHHHHHHHhccc---cCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC------------------
Confidence 999999999999988421 11246899999999999999999999999987654433311
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCC-ChHHHHHHHHHHHHHhhhc
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~~~~~~~~~ 360 (586)
. ..+ ....+|++|++++|||+|++ +++++++++++|++++...
T Consensus 284 ~--~~~-----------~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~~~ 327 (330)
T 2c20_A 284 A--GDP-----------ARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNG 327 (330)
T ss_dssp S--SCC-----------SEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCSSC
T ss_pred C--Ccc-----------cccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhhhc
Confidence 0 001 24678999999999999999 9999999999999886543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=361.73 Aligned_cols=303 Identities=22% Similarity=0.297 Sum_probs=241.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+|+|||||||||||++++++|+++| + +|++++ |..... ...+ ...+++++.+|+.|.+++.++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~--------r~~~~~--~~~l~~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVVD--------NLLSAE--KINVPDHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEC--------CCTTCC--GGGSCCCTTEEEECSCTTCHHHHHHCCS
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc-eEEEEE--------CCCCCc--hhhccCCCceEEEECCCCCHHHHHHHhh
Confidence 456899999999999999999999999 6 999944 433211 0111 14578999999999999999999
Q ss_pred CCCEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCC--CCccc-CC-C
Q 007866 84 GASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGD--ETLTC-CW-K 155 (586)
Q Consensus 84 ~~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~--E~~p~-~~-~ 155 (586)
++|+|||+|+.... ..++...+++|+.++.+++++|+++ +++||||+||.++||... ..+.+ |+.+. +. .
T Consensus 99 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~--~~~~~~~E~~~~~~~~~ 176 (377)
T 2q1s_A 99 EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKT--FDDAKATEETDIVSLHN 176 (377)
T ss_dssp CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC----------------CCCCCCCSSC
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCC--CCCcCcccccccccccC
Confidence 99999999998632 3467889999999999999999999 999999999999997532 23455 66521 23 6
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC---------------CCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 156 FQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD---------------TQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~---------------~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
|.++|+.+|..+|.+++.++.+.|++++++||+.+|||+. ...++.++..+.+|+++.+++++++
T Consensus 177 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~ 256 (377)
T 2q1s_A 177 NDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA 256 (377)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCe
Confidence 7889999999999999998766799999999999999986 3457778888888888778888999
Q ss_pred cccccchhHHHHH-HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHA-HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (586)
Q Consensus 221 ~~~~i~v~Dva~a-i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~ 299 (586)
.++|+|++|+|++ ++.+++ .+. .| +||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~-----~~~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------------- 316 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAAD-----GTP-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPKR------------- 316 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHH-----CCT-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC-------------
T ss_pred EEeeEEHHHHHHHHHHHHHh-----cCC-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC-------------
Confidence 9999999999999 999888 233 56 99999999999999999999999987654444310
Q ss_pred HHhccccCCCCCCcHHHHHHhcc-ceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 300 EKLGLRTYNHSLSACYIVQLASR-TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+ . ... ...+|++|++++|||+|+++++|+++++++|++++..
T Consensus 317 ----------~----~----~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 359 (377)
T 2q1s_A 317 ----------P----W----DNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLA 359 (377)
T ss_dssp ----------G----G----GCC-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTHH
T ss_pred ----------c----c----ccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 0 0 012 5678999999999999999999999999999987643
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=348.74 Aligned_cols=307 Identities=21% Similarity=0.203 Sum_probs=244.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++|+||||||+||||++++++|+++| .++|+++|+... .+.. ..+.......+++++.+|+.|.+++.+++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~---~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY---GSNP--ANLKDLEDDPRYTFVKGDVADYELVKELVRKV 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCT---TCCG--GGGTTTTTCTTEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcc---cCch--hHHhhhccCCceEEEEcCCCCHHHHHHHhhCC
Confidence 35789999999999999999999997 258999665321 0000 01111112357899999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gv-kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
|+|||+|+... ...++...+++|+.|+.+++++|.++++ +||||+||.++||... ..+.+|+.| ..|.++|+
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~~--~~~~~~Y~ 152 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL--KGSFTENDR--LMPSSPYS 152 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS--SSCBCTTBC--CCCCSHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC--CCCcCCCCC--CCCCCccH
Confidence 99999999863 2346788999999999999999998875 7999999999997543 236778774 46789999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.+|..+|.+++.++.+.|++++++||+++|||+.. .+++.++..+.+++.+.+++++++.++|+|++|+|++++.+++
T Consensus 153 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~ 232 (336)
T 2hun_A 153 ATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLL 232 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHh
Confidence 99999999999988778999999999999999864 4567778888888888888999999999999999999999887
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (586)
. ...|++||+++++++|+.|+++.+.+.+|.+.+.+... . ..+.
T Consensus 233 ~------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~~-------- 276 (336)
T 2hun_A 233 K------GESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELV------------------E----DRPG-------- 276 (336)
T ss_dssp H------CCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEE------------------C----CCTT--------
T ss_pred C------CCCCCEEEeCCCCcccHHHHHHHHHHHhCCCccccccc------------------C----CCCC--------
Confidence 2 34678999999999999999999999999865422210 0 0010
Q ss_pred hccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 320 ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
......+|++|++++|||+|+++++++++++++|++++.
T Consensus 277 ~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 315 (336)
T 2hun_A 277 HDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNE 315 (336)
T ss_dssp CCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTH
T ss_pred chhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 012356799999999999999999999999999998763
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=351.33 Aligned_cols=297 Identities=18% Similarity=0.137 Sum_probs=244.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
.+|+||||||+||||++++++|+++| ++|+++++ .+... . + +++++.+|+.|.+++.+++++
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~---~-l---~~~~~~~Dl~d~~~~~~~~~~~~ 74 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSR--------NNEAK---L-P---NVEMISLDIMDSQRVKKVISDIK 74 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES--------CTTCC---C-T---TEEEEECCTTCHHHHHHHHHHHC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCC-CEEEEEec--------CCccc---c-c---eeeEEECCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 59999544 33211 1 1 688999999999999999986
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
+|+|||+|+... ...++...+++|+.|+.+++++|++. +++|+||+||.++||.......+.+|+.| ..|.++|
T Consensus 75 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~--~~~~~~Y 152 (321)
T 2pk3_A 75 PDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQ--LRPMSPY 152 (321)
T ss_dssp CSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSC--CBCCSHH
T ss_pred CCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCC--CCCCCcc
Confidence 999999999863 34578899999999999999999876 68999999999999754213446788874 4788999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC--cHHHHHHHhcC---C--CceEEEcCCCccccccchhHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKP---G--WTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~---g--~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
+.+|..+|.+++.++.++|++++++||+++|||+... .++.++..+.+ | +++..++++++.++|+|++|+|++
T Consensus 153 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 153 GVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHH
Confidence 9999999999999877679999999999999998753 56666666555 6 566788899999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
++.+++. + ..|++||+++++++|+.|+++.+.+.+|.+.+....|.. . .+ .
T Consensus 233 ~~~~~~~-----~-~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------------~------~~-~- 283 (321)
T 2pk3_A 233 YWLLSQY-----G-KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ---------------L------RP-S- 283 (321)
T ss_dssp HHHHHHH-----C-CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGG---------------C------CS-S-
T ss_pred HHHHHhC-----C-CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeecccc---------------C------CC-c-
Confidence 9999882 2 467899999999999999999999999987554444321 0 00 0
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
......+|++|++++|||+|+++++|+++++++|+++
T Consensus 284 ------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 284 ------EVPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp ------CCSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHT
T ss_pred ------ccchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhc
Confidence 0135678999999999999999999999999999975
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=351.32 Aligned_cols=311 Identities=22% Similarity=0.238 Sum_probs=247.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC---CCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS---SGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~---~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+|||||||||||++++++|+++| ++|+++++... ........+...+. ..+++++.+|+.|.+++.+++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 100 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFAT---GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNAC 100 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS---CCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCc---cchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHh
Confidence 357899999999999999999999999 59999554321 00000000000000 247899999999999999999
Q ss_pred cCCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 83 EGASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 83 ~~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
+++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++|+... ..+.+|+.| ..|.++
T Consensus 101 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~--~~~~~E~~~--~~~~~~ 176 (352)
T 1sb8_A 101 AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHP--GLPKVEDTI--GKPLSP 176 (352)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC--CSSBCTTCC--CCCCSH
T ss_pred cCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCC--CCCCCCCCC--CCCCCh
Confidence 99999999999763 23567889999999999999999999999999999999997543 236778774 478899
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
|+.+|..+|.+++.++.+.|++++++||+.+|||+.. ..++.++..+.+|+++.+++++++.++|+|++|+|++
T Consensus 177 Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a 256 (352)
T 1sb8_A 177 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQA 256 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHH
Confidence 9999999999999987667999999999999999754 3466777777788887888999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHc---CCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCC
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL---GYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHS 310 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~---g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
++.+++. .+...+++||+++++++|+.|+++.+.+.+ |.+.+.. |.. .. ..+
T Consensus 257 ~~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~--~~~----------------~~---~~~ 311 (352)
T 1sb8_A 257 NLLAATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHRE--PVY----------------RD---FRE 311 (352)
T ss_dssp HHHHHTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCC--CEE----------------EC---CCT
T ss_pred HHHHHhc----cccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCC--cee----------------cC---CCc
Confidence 9988872 124568899999999999999999999999 8765421 100 00 000
Q ss_pred CCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
. ......+|++|++++|||+|+++++|+++++++||+++
T Consensus 312 ~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 350 (352)
T 1sb8_A 312 G--------DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 350 (352)
T ss_dssp T--------CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred c--------chhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 0 01245689999999999999999999999999999865
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=347.54 Aligned_cols=293 Identities=22% Similarity=0.313 Sum_probs=240.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+||||||+||||++++++|+++| ++|+++|+. .... ...+ ..+++++.+|++|.+++.++++ ++|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~--------~~~~--~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d 68 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNL--------ATGK--RENV-PKGVPFFRVDLRDKEGVERAFREFRPT 68 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECCC--------SSCC--GGGS-CTTCCEECCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECC--------CcCc--hhhc-ccCeEEEECCCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999999 499995442 1100 0111 1367889999999999999998 899
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-cccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA-DVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~-~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
+|||+|+... ...++...+++|+.|+.+++++|++++++|+||+||. ++||... ...+.+|+.| ..|.++|+.
T Consensus 69 ~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~-~~~~~~E~~~--~~~~~~Y~~ 145 (311)
T 2p5y_A 69 HVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVP-EGERAEETWP--PRPKSPYAA 145 (311)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCC-TTCCBCTTSC--CCCCSHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCC-CCCCcCCCCC--CCCCChHHH
Confidence 9999999763 2356788999999999999999999999999999999 8996422 2235677763 467889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEE-----cCCCccccccchhHHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFII-----GSGENMSDFTYVENVAH 232 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-----~~~~l~~~~~~g~~~~i~-----g~g~~~~~~i~v~Dva~ 232 (586)
||..+|.+++.++.+.|++++++||+++|||+... .++.++..+.++.++.++ +++.+.++|+|++|+|+
T Consensus 146 sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ 225 (311)
T 2p5y_A 146 SKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225 (311)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHH
Confidence 99999999999877679999999999999997642 466677777778877777 88899999999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+++.+++. + +++||+++++++|+.|+++.+.+.+|.+.+....|... ..
T Consensus 226 a~~~~~~~-----~---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------------------~~--- 274 (311)
T 2p5y_A 226 AHALALFS-----L---EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRP--------------------GD--- 274 (311)
T ss_dssp HHHHHHHH-----C---CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TC---
T ss_pred HHHHHHhC-----C---CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCc--------------------cc---
Confidence 99999872 2 78999999999999999999999999876544333110 00
Q ss_pred cHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
.....+|++|+++ |||+|+++++|+++++++|+++
T Consensus 275 --------~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 275 --------LERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp --------CSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHHT
T ss_pred --------hhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHHh
Confidence 0246789999999 9999999999999999999975
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=349.35 Aligned_cols=310 Identities=16% Similarity=0.203 Sum_probs=243.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCC---CCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSL---SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l---~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|+||||||+||||++++++|+++| ++|+++|+... -.|++.... ....+ ...+++++.+|+.|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~--~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHN--AFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFK 78 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSS--SCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCc--ccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHH
Confidence 5899999999999999999999999 49999665421 011110000 00000 12468899999999999999998
Q ss_pred --CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCC-C
Q 007866 84 --GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-Q 157 (586)
Q Consensus 84 --~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~ 157 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||.. ...+.+|+.| ..| .
T Consensus 79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~--~~~~~~E~~~--~~p~~ 154 (348)
T 1ek6_A 79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNP--QYLPLDEAHP--TGGCT 154 (348)
T ss_dssp HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSC--SSSSBCTTSC--CCCCS
T ss_pred hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCC--CCCCcCCCCC--CCCCC
Confidence 8999999999763 2356788999999999999999999999999999999999753 3346788774 356 7
Q ss_pred ChHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCC------------CCcHHHHHHHhc-CCCceEEEc------C
Q 007866 158 DLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------S 217 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~------------~~~~~~l~~~~~-~g~~~~i~g------~ 217 (586)
++|+.+|..+|.+++.++.+ .+++++++||+++|||+. ..+++.+.+.+. .+..+.+++ +
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 234 (348)
T 1ek6_A 155 NPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTED 234 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSS
T ss_pred CchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCC
Confidence 89999999999999998754 249999999999999852 235666666666 677777776 6
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCC-cEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAG-MAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g-~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~ 296 (586)
|++.++|+|++|+|++++.+++.. ....| ++||+++++++|+.|+++.+.+.+|.+.+...+|...
T Consensus 235 g~~~~~~i~v~Dva~a~~~~~~~~----~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~--------- 301 (348)
T 1ek6_A 235 GTGVRDYIHVVDLAKGHIAALRKL----KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARRE--------- 301 (348)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHH----TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCT---------
T ss_pred CceEEeeEEHHHHHHHHHHHHhcc----cccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCC---------
Confidence 788999999999999999998832 11344 8999999999999999999999999876544333110
Q ss_pred HHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.. .....+|++|++++|||+|+++++++++++++|++++..
T Consensus 302 -----------~~-----------~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 302 -----------GD-----------VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp -----------TC-----------CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred -----------cc-----------chhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 00 024578999999999999999999999999999987643
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=348.84 Aligned_cols=305 Identities=18% Similarity=0.214 Sum_probs=246.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
||+||||||+||||++++++|+++ | ++|+++|+... ..... .. ..+...+++++.+|+.|.+++.++++++
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~---~~~~~--~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 76 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTY---AGNKA--NL-EAILGDRVELVVGDIADAELVDKLAAKA 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCT---TCCGG--GT-GGGCSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCC---CCChh--HH-hhhccCCeEEEECCCCCHHHHHHHhhcC
Confidence 689999999999999999999999 7 59999655321 00000 11 1122357899999999999999999999
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC----------CCCCCCCCccc
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH----------DIHNGDETLTC 152 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~----------~~~~~~E~~p~ 152 (586)
|+|||+|+... ...+++..+++|+.|+.+++++|.++++ ||||+||.++||.... ...+.+|+.|
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~- 154 (348)
T 1oc2_A 77 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN- 154 (348)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC-
T ss_pred CEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCC-
Confidence 99999999863 2346788999999999999999999998 9999999999975421 1146677764
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHH
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (586)
..|.++|+.+|..+|.+++.++.+.|++++++||+.+|||+.. ..++.++..+..|+++.+++++.+.++|+|++|+
T Consensus 155 -~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 233 (348)
T 1oc2_A 155 -YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 233 (348)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHH
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHH
Confidence 4678999999999999999987767999999999999999864 4567777777778877888999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCC
Q 007866 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHS 310 (586)
Q Consensus 231 a~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
|++++.+++. ...|++||+++++++|+.|+++.+.+.+|.+.+.+... . ..+
T Consensus 234 a~~~~~~~~~------~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~ 285 (348)
T 1oc2_A 234 STGVWAILTK------GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------------------T----DRA 285 (348)
T ss_dssp HHHHHHHHHH------CCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------------------C----CCT
T ss_pred HHHHHHHhhC------CCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccC------------------C----CCC
Confidence 9999999872 34678999999999999999999999999875422110 0 011
Q ss_pred CCcHHHHHHhccceeechhhHhhccCCCCCCC-hHHHHHHHHHHHHHhh
Q 007866 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSFSHLA 358 (586)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~-lee~i~~~i~~~~~~~ 358 (586)
. ......+|++|++++|||+|+++ ++++++++++|++++.
T Consensus 286 ~--------~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 286 G--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp T--------CCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred C--------cccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 0 01235689999999999999998 9999999999998754
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=347.18 Aligned_cols=305 Identities=20% Similarity=0.234 Sum_probs=245.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc---CC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL---GK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~---g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|+|||||||||||++++++|+++ |. ++|+++++... .+... .+.......+++++.+|+.|.+++.+++.
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~---~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 75 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY---AGNRA--NLAPVDADPRLRFVHGDIRDAGLLARELR 75 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCT---TCCGG--GGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCc---cCchh--hhhhcccCCCeEEEEcCCCCHHHHHHHhc
Confidence 58999999999999999999996 61 38999655321 00100 11111123578999999999999999999
Q ss_pred CCCEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 84 GASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 84 ~~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
++|+|||+|+.... ..+++..+++|+.++.+++++|.+.+++||||+||.++||... ..+.+|+.| ..|.++|
T Consensus 76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~--~~~~~~Y 151 (337)
T 1r6d_A 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID--SGSWTESSP--LEPNSPY 151 (337)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS--SSCBCTTSC--CCCCSHH
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCC--CCCCCCCCC--CCCCCch
Confidence 99999999997631 3467889999999999999999999999999999999997543 246677763 4788999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
+.+|..+|.+++.++.+.|++++++||+.+|||+.. ..++.++..+..++++.+++++++.++|+|++|+|++++.++
T Consensus 152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 231 (337)
T 1r6d_A 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHH
Confidence 999999999999987767999999999999999864 456777888888888788899999999999999999999988
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHH
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (586)
+. ...|++||+++++++|+.|+++.+.+.+|.+.+.+... . ..+.
T Consensus 232 ~~------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~------------------~----~~~~------- 276 (337)
T 1r6d_A 232 AG------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------------------A----DRKG------- 276 (337)
T ss_dssp HH------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------------------C----CCTT-------
T ss_pred hC------CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceec------------------C----CCCC-------
Confidence 72 24678999999999999999999999999764322110 0 0010
Q ss_pred HhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
....+.+|++|++++|||+|+++++++++++++|++++.
T Consensus 277 -~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~ 315 (337)
T 1r6d_A 277 -HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENR 315 (337)
T ss_dssp -CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCH
T ss_pred -CcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhch
Confidence 012346799999999999999999999999999998754
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=349.97 Aligned_cols=317 Identities=17% Similarity=0.162 Sum_probs=244.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~~~D 86 (586)
|+|||||||||||++++++|+++ | ++|+++++. ..+ ........+++++.+|+.| .+.+.++++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~--------~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d 69 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIG--------SDA--ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCD 69 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESC--------CGG--GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCC--------cch--HHHhhcCCCeEEEeccccCcHHHHHhhccCCC
Confidence 68999999999999999999998 7 599995543 221 1111233578999999998 467888899999
Q ss_pred EEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc-----CCCCCC
Q 007866 87 TVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC-----CWKFQD 158 (586)
Q Consensus 87 ~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~-----~~~p~~ 158 (586)
+|||+|+.... ..++...+++|+.++.+++++|++.+ +||||+||.++||... ..+.+|+.+. ...|.+
T Consensus 70 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~--~~~~~e~~~~~~~~~~~~~~~ 146 (345)
T 2bll_A 70 VVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKPRW 146 (345)
T ss_dssp EEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCC--CSSBCTTTCCCBCCCTTCGGG
T ss_pred EEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCC--CCCcCCcccccccCcccCccc
Confidence 99999997632 34678899999999999999999999 8999999999997543 2346666532 114566
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC----------cHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~----------~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
.|+.+|..+|++++.++.+.|++++++||+.+|||+... .++.++..+.+|+++.+++++++.++|+|++
T Consensus 147 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 226 (345)
T 2bll_A 147 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHH
Confidence 999999999999999877679999999999999998632 4566777777888877888899999999999
Q ss_pred HHHHHHHHHHHHhhccccc--CCCcEEEEeCCC-CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 229 NVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~--~~g~~~ni~~~~-~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
|+|++++.+++ .+. ..|++||+++++ ++|+.|+++.+.+.+|.+.+.+.+|.+....... .....+
T Consensus 227 Dva~a~~~~~~-----~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~-- 295 (345)
T 2bll_A 227 DGIEALYRIIE-----NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE----SSSYYG-- 295 (345)
T ss_dssp HHHHHHHHHHH-----CGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------------
T ss_pred HHHHHHHHHHh-----hccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCcccccccccc----chhhcc--
Confidence 99999999988 232 568899999986 8999999999999999876555555321000000 000000
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
... .......+|++|++++|||+|+++++++++++++|++++...
T Consensus 296 ---------~~~-~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 296 ---------KGY-QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp ---------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred ---------ccc-cchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 000 001356789999999999999999999999999999876543
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=346.96 Aligned_cols=293 Identities=17% Similarity=0.198 Sum_probs=236.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
++|+||||||+||||++++++|+++|+ +|++ +.|.. .+|+.|.+++.++++ +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~--------~~r~~-----------------~~D~~d~~~~~~~~~~~~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGD-VELV--------LRTRD-----------------ELNLLDSRAVHDFFASER 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEE--------CCCTT-----------------TCCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCC-eEEE--------EecCc-----------------cCCccCHHHHHHHHHhcC
Confidence 358999999999999999999999995 8888 44431 269999999999998 9
Q ss_pred CCEEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc--CCCCC-
Q 007866 85 ASTVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC--CWKFQ- 157 (586)
Q Consensus 85 ~D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~--~~~p~- 157 (586)
+|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||... ..+.+|+.+. +..|.
T Consensus 56 ~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~p~~ 133 (321)
T 1e6u_A 56 IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA--KQPMAESELLQGTLEPTN 133 (321)
T ss_dssp CSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC--CSSBCGGGTTSSCCCGGG
T ss_pred CCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCC--CCCcCccccccCCCCCCC
Confidence 999999999863 23567889999999999999999999999999999999997532 3356777632 23453
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcC----C-CceEEEcCCCccccccc
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKP----G-WTKFIIGSGENMSDFTY 226 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~----g-~~~~i~g~g~~~~~~i~ 226 (586)
++|+.+|..+|++++.++.+.|++++++||+.+|||+.. .+++.++..+.. | .++.+++++++.++|+|
T Consensus 134 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~ 213 (321)
T 1e6u_A 134 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH 213 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEE
Confidence 599999999999999987767999999999999999865 456777776653 3 56677899999999999
Q ss_pred hhHHHHHHHHHHHHhhcc---cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 227 VENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~---~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
++|+|++++.+++..... .+...+++||+++++++|+.|+++.+.+.+|.+.+....|.
T Consensus 214 v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------------------ 275 (321)
T 1e6u_A 214 VDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------------ 275 (321)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT------------------
T ss_pred HHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC------------------
Confidence 999999999999831100 00123679999999999999999999999998754333221
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.+. ......+|++|+++ |||+|+++++++++++++|++++..
T Consensus 276 -----~~~--------~~~~~~~d~~k~~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 276 -----KPD--------GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp -----SCC--------CCSBCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred -----CCC--------CcccccCCHHHHHh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 010 01346789999999 9999999999999999999987643
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=352.80 Aligned_cols=309 Identities=21% Similarity=0.237 Sum_probs=241.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~ 85 (586)
||+|||||||||||++++++|+++| ++|+++|+.. |..............+++++.+|+.|.+++.+++++ +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~-----~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLS-----RKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCC-----STTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCC-----ccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 4799999999999999999999999 5999965521 111000000000123588999999999999999988 9
Q ss_pred CEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCC--------------CCCC
Q 007866 86 STVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDI--------------HNGD 147 (586)
Q Consensus 86 D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~--------------~~~~ 147 (586)
|+|||+|+.... ..++...+++|+.|+.+++++|++.+++ ||||+||.++||...... .+.+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~ 154 (347)
T 1orr_A 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154 (347)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBC
T ss_pred CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcc
Confidence 999999998632 3467889999999999999999999986 999999999997532211 1245
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----CcHHHHHHHhcCCC-----ceEEEcC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGW-----TKFIIGS 217 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-----~~~~~l~~~~~~g~-----~~~i~g~ 217 (586)
|+. +..|.++|+.+|..+|.+++.++.+.|++++++||+.+|||+.. ..++.++..+..+. ++.++++
T Consensus 155 e~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (347)
T 1orr_A 155 EST--QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGN 232 (347)
T ss_dssp TTS--CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred ccC--CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecC
Confidence 555 34678899999999999999987767999999999999999753 24566666555554 5678899
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC--CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~--~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~ 295 (586)
|++.++|+|++|+|++++.+++. .+...|++||+++++ ++|+.|+++.+.+.+|.+.+...+|..
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~----~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------- 299 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALAN----VSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR--------- 299 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHT----HHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC---------
T ss_pred CcceEeeEEHHHHHHHHHHHHhc----cccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCC---------
Confidence 99999999999999999998872 123567899999986 499999999999999987655444310
Q ss_pred HHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+. ......+|++|++++|||+|+++++|+++++++|++++..
T Consensus 300 --------------~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 300 --------------ES--------DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp --------------SS--------CCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred --------------CC--------CcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 00 0124568999999999999999999999999999988654
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=348.11 Aligned_cols=297 Identities=19% Similarity=0.203 Sum_probs=238.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.++|+|||||||||||++++++|+++| ++|+++++..... ......+.......+++++.+|+. ++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~----------~~ 70 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPP---MIPPEGTGKFLEKPVLELEERDLS----------DV 70 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCC---SSCCTTSSEEECSCGGGCCHHHHT----------TE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCccc---ccchhhhhhhccCCCeeEEeCccc----------cC
Confidence 357899999999999999999999999 4999955433100 000111112222345666666665 79
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|+|||+|+... ...++...++ |+.++.+++++|+++|++||||+||.++||.. ...+.+|+. +..|.++|+.
T Consensus 71 d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~--~~~~~~E~~--~~~p~~~Y~~ 145 (321)
T 3vps_A 71 RLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQA--DTLPTPEDS--PLSPRSPYAA 145 (321)
T ss_dssp EEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--SSSSBCTTS--CCCCCSHHHH
T ss_pred CEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCC--CCCCCCCCC--CCCCCChhHH
Confidence 99999999863 2456667778 99999999999999999999999999999754 334678877 4578999999
Q ss_pred HHHHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 163 LKAQAEALVLFANNIDGL-LTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl-~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
+|..+|++++.++.++|+ +++++||+++|||+.. ..++.++..+..++++.+++++++.++|+|++|+|++++.+++
T Consensus 146 sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 146 SKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999999888899 9999999999999865 4678888888888888899999999999999999999999887
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (586)
.+ ..| +||+++++++|+.|+++.+. .+|.+.+....|... .
T Consensus 226 -----~~-~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~--------------------~----------- 266 (321)
T 3vps_A 226 -----RP-LPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRP--------------------N----------- 266 (321)
T ss_dssp -----SC-CCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCT--------------------T-----------
T ss_pred -----cC-CCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCC--------------------C-----------
Confidence 23 336 99999999999999999999 999876655444210 0
Q ss_pred hccceeechhhHhhccCCCC-CCChHHHHHHHHHHHHHhhhc
Q 007866 320 ASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p-~~~lee~i~~~i~~~~~~~~~ 360 (586)
......+|++|++++|||+| +++++++++++++||+++...
T Consensus 267 ~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~~ 308 (321)
T 3vps_A 267 EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLD 308 (321)
T ss_dssp CCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCTT
T ss_pred CcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCCc
Confidence 01356789999999999999 889999999999999886543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=344.54 Aligned_cols=306 Identities=17% Similarity=0.143 Sum_probs=240.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC---CCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~---~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.++|+||||||+||||++++++|+++| ++|+++++. +.... +.......+++++.+|+.|.+++.+++
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 82 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVAR--------RSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAV 82 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC--------CSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCC--------CccccccchhhccccCceEEEECCCCCHHHHHHHH
Confidence 467999999999999999999999999 599995543 22100 000001346889999999999999999
Q ss_pred cC--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 83 EG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 83 ~~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gv-kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
++ +|+|||+|+... ...++...+++|+.++.+++++|++.++ +||||+||.++||... ..+.+|+.| ..|
T Consensus 83 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~--~~~~~E~~~--~~p 158 (335)
T 1rpn_A 83 IKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ--AERQDENTP--FYP 158 (335)
T ss_dssp HHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS--SSSBCTTSC--CCC
T ss_pred HHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC--CCCCCcccC--CCC
Confidence 85 699999999763 2567889999999999999999999996 8999999999997543 236778774 478
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEEcCCCccccccchhHH
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dv 230 (586)
.++|+.+|..+|.+++.++.+++++++++||+++|||+... . +..++..+..|+ ....++++++.++|+|++|+
T Consensus 159 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dv 238 (335)
T 1rpn_A 159 RSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDY 238 (335)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHH
Confidence 89999999999999999887679999999999999997542 2 445555666666 33467889999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhccccCCC
Q 007866 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (586)
Q Consensus 231 a~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~-~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (586)
|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+ .+.++... ..
T Consensus 239 a~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------------~~ 291 (335)
T 1rpn_A 239 VEAMWLMLQ-----QDK--ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAF--------------------FR 291 (335)
T ss_dssp HHHHHHHHH-----SSS--CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGG--------------------CC
T ss_pred HHHHHHHHh-----cCC--CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccc--------------------cC
Confidence 999999998 232 479999999999999999999999997632 11111100 00
Q ss_pred CCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+ . ......+|++|++++|||+|+++++|+++++++|++++..
T Consensus 292 ~-~-------~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 292 P-A-------EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp S-S-------CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred C-C-------cchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 0 0 0124567999999999999999999999999999988653
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=348.56 Aligned_cols=313 Identities=19% Similarity=0.201 Sum_probs=241.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hcCCcEEEEecCCcccccCCCCC---CCCC----CCCCC---CCC---eEEEEccCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSES---NSLL----PDSLS---SGR---AEYHQVDVR 73 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~-~~g~~~V~~~d~~~~~~l~r~~~---~~~~----~~~l~---~~~---~~~~~~Dl~ 73 (586)
+|+||||||+||||++++++|+ ++| ++|+++++..... ..... ...+ ..... ..+ ++++.+|+.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTH-GKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTT-TCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCccc-ccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 4699999999999999999999 999 5999966542100 00000 0000 00000 124 889999999
Q ss_pred CHHHHHHHhc--C-CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC-----C
Q 007866 74 DISQIKKVLE--G-ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH-----D 142 (586)
Q Consensus 74 d~~~l~~~l~--~-~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~-----~ 142 (586)
|.+++.++++ + +|+|||+|+... ...++...+++|+.++.+++++|++.+++||||+||.++||.... .
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~ 159 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN 159 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccc
Confidence 9999999997 7 999999999863 235678899999999999999999999999999999999975431 1
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-----------CCcHHHHH----HHhc
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-----------TQLVPLLV----NLAK 207 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~-----------~~~~~~l~----~~~~ 207 (586)
..+.+|+.| ..|.++|+.+|..+|.+++.++.+.|++++++||+++|||+. ..+++.++ ..+.
T Consensus 160 ~~~~~E~~~--~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 1gy8_A 160 AEPIDINAK--KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (397)
T ss_dssp CCCBCTTSC--CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred ccCcCccCC--CCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 346788774 478899999999999999998876799999999999999963 23455555 1333
Q ss_pred CCC------------ceEEEc------CCCccccccchhHHHHHHHHHHHHhhcccccCC-----C---cEEEEeCCCCc
Q 007866 208 PGW------------TKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSRMVSVA-----G---MAFFITNLEPI 261 (586)
Q Consensus 208 ~g~------------~~~i~g------~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~-----g---~~~ni~~~~~~ 261 (586)
.+. .+.+++ +|++.++|+|++|+|++++.+++.. ... + ++||+++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~-----~~~~~~~~~~~~~~~ni~~~~~~ 312 (397)
T 1gy8_A 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYV-----EKLGPNDKSKYFSVFNLGTSRGY 312 (397)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHH-----HTCCTTTGGGSEEEEEESCSCCE
T ss_pred hcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcc-----cccccccccCCCcEEEeCCCCcc
Confidence 443 456776 7889999999999999999998842 222 3 79999999999
Q ss_pred CHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCC
Q 007866 262 KFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVV 341 (586)
Q Consensus 262 t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~ 341 (586)
|+.|+++.+.+.+|.+.+....|.. . ..+ ....+|++|++++|||+|++
T Consensus 313 s~~e~~~~i~~~~g~~~~~~~~~~~-------------------~-~~~-----------~~~~~d~~k~~~~lG~~p~~ 361 (397)
T 1gy8_A 313 SVREVIEVARKTTGHPIPVRECGRR-------------------E-GDP-----------AYLVAASDKAREVLGWKPKY 361 (397)
T ss_dssp EHHHHHHHHHHHHCCCCCEEEECCC-------------------T-TCC-----------SEECBCCHHHHHHTCCCCSC
T ss_pred cHHHHHHHHHHHhCCCCCeeeCCCC-------------------C-Ccc-----------cccccCHHHHHHHhCCCCCc
Confidence 9999999999999987654333310 0 001 24678999999999999999
Q ss_pred -ChHHHHHHHHHHHHHhhhc
Q 007866 342 -SLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 342 -~lee~i~~~i~~~~~~~~~ 360 (586)
+++++++++++|++++...
T Consensus 362 ~~l~e~l~~~~~~~~~~~~~ 381 (397)
T 1gy8_A 362 DTLEAIMETSWKFQRTHPNG 381 (397)
T ss_dssp CSHHHHHHHHHHHHHTCTTT
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 9999999999999886543
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=342.90 Aligned_cols=301 Identities=21% Similarity=0.232 Sum_probs=240.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+.+|+|||||||||||++++++|+++| ++|+++++... +... .........+++++.+|+.|. .+.++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~~--~~~~~~~~~~~~~~~~D~~~~-----~~~~~ 92 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFT----GRKR--NVEHWIGHENFELINHDVVEP-----LYIEV 92 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS----CCGG--GTGGGTTCTTEEEEECCTTSC-----CCCCC
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCc----cchh--hhhhhccCCceEEEeCccCCh-----hhcCC
Confidence 457899999999999999999999999 59999665321 0000 111122245789999999875 36789
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc---cCCCCCCh
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDL 159 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p---~~~~p~~~ 159 (586)
|+|||+|+... ...++...+++|+.++.+++++|++.|+ |+||+||.++||... ..+.+|+.+ .+..|.++
T Consensus 93 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~--~~~~~E~~~~~~~~~~~~~~ 169 (343)
T 2b69_A 93 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPE--VHPQSEDYWGHVNPIGPRAC 169 (343)
T ss_dssp SEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCS--SSSBCTTCCCBCCSSSTTHH
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCC--CCCCcccccccCCCCCCCCc
Confidence 99999999863 2457788999999999999999999987 999999999997543 235666642 24466788
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (586)
|+.+|..+|.+++.++.+.|++++++||+++|||+.. ..++.++..+.+++.+.+++++++.++|+|++|+|++++
T Consensus 170 Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 249 (343)
T 2b69_A 170 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV 249 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHH
Confidence 9999999999999887767999999999999999753 456777777777887788999999999999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
.+++ .+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|... ..+
T Consensus 250 ~~~~-----~~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~--------------------~~~----- 297 (343)
T 2b69_A 250 ALMN-----SN--VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ--------------------DDP----- 297 (343)
T ss_dssp HHHT-----SS--CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TCC-----
T ss_pred HHHh-----cC--CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC--------------------CCC-----
Confidence 8876 22 367999999999999999999999999876655444210 001
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
....+|++|++++|||+|+++++|+++++++|++++..
T Consensus 298 ------~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 298 ------QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 335 (343)
T ss_dssp ------CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ------ceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 24567999999999999999999999999999987653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=343.15 Aligned_cols=312 Identities=22% Similarity=0.250 Sum_probs=245.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
|+||||||+||||++++++|++. | ++|+++|+... .... ..+.......+++++.+|+.|.+++.++++ ++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~---~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTY---AGNL--ESLSDISESNRYNFEHADICDSAEITRIFEQYQP 74 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCT---TCCG--GGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCC---CCch--hhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCC
Confidence 57999999999999999999998 6 59999665321 0000 011111123578999999999999999998 89
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC--CCC-------EEEEecCccccccCCCCC--------CC
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC--KVR-------RLVYNSTADVVFDGSHDI--------HN 145 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~--gvk-------r~I~~SS~~vyg~~~~~~--------~~ 145 (586)
|+|||+|+... ...+++..+++|+.|+.+++++|.++ +++ ||||+||.++||...... .+
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~ 154 (361)
T 1kew_A 75 DAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL 154 (361)
T ss_dssp SEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCC
Confidence 99999999863 23467889999999999999999998 887 999999999997543111 15
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
.+|+.| ..|.++|+.+|..+|.+++.++.+.|++++++||+.+|||+.. ..++.++..+.+++.+.+++++.+.++
T Consensus 155 ~~E~~~--~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (361)
T 1kew_A 155 FTETTA--YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRD 232 (361)
T ss_dssp BCTTSC--CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred CCCCCC--CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence 677763 4788999999999999999987767999999999999999864 456777777777877788899999999
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
|+|++|+|++++.+++. ...|++||+++++++|+.|+++.+.+.+|.+.+... |.. +...
T Consensus 233 ~i~v~Dva~a~~~~~~~------~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~-------------~~~~ 292 (361)
T 1kew_A 233 WLYVEDHARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYR-------------EQIT 292 (361)
T ss_dssp EEEHHHHHHHHHHHHHH------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGG-------------GGEE
T ss_pred eEEHHHHHHHHHHHHhC------CCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-ccc-------------ccee
Confidence 99999999999999872 346889999999999999999999999987543221 211 0000
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
... ..+. ......+|++|++++|||+|+++++++++++++|++++
T Consensus 293 ~~~-~~~~--------~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 293 YVA-DRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp EEC-CCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ecC-CCCc--------ccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 000 0110 01245789999999999999999999999999999875
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=343.83 Aligned_cols=311 Identities=17% Similarity=0.168 Sum_probs=244.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+||||||+||||++++++|+++|+ +|+++++.. ... .....+ ...+++++.+|+.|.+++.++++
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 77 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA--------PTVPSLFETARVADGMQSEIGDIRDQNKLLESIR 77 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC--------SSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHH
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCC--------cccchhhHhhccCCceEEEEccccCHHHHHHHHH
Confidence 3468999999999999999999999995 999955432 211 000000 13478999999999999999998
Q ss_pred C--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 84 G--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 84 ~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+ +|+|||+|+... ...++...+++|+.|+.+++++|.+.+ ++||||+||.++||.... ..+.+|+.| ..|.
T Consensus 78 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~~--~~~~ 154 (357)
T 1rkx_A 78 EFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENEA--MGGY 154 (357)
T ss_dssp HHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTSC--BCCS
T ss_pred hcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCCC--CCCC
Confidence 6 899999999642 245678899999999999999999887 899999999999975432 235677663 4678
Q ss_pred ChHHHHHHHHHHHHHhhcCCC---------CceEEEEeCCCcccCCCC---CcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 158 DLMCDLKAQAEALVLFANNID---------GLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~---------gl~~~ilRp~~v~G~~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
++|+.+|..+|++++.++.+. |++++++||+.+|||++. .+++.++..+.+|+++.+ +++++.++|+
T Consensus 155 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v 233 (357)
T 1rkx_A 155 DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII-RNPHAIRPWQ 233 (357)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEEC-SCTTCEECCE
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEE-CCCCCeeccE
Confidence 999999999999999886533 899999999999999863 567888888888887544 5678899999
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCC--CCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~--~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
|++|+|++++.+++.... .+...+++||++++ +++|+.|+++.+.+.+|.+.+. ..+..
T Consensus 234 ~v~Dva~a~~~~~~~~~~-~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~----------------- 294 (357)
T 1rkx_A 234 HVLEPLSGYLLLAQKLYT-DGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASW-QLDGN----------------- 294 (357)
T ss_dssp ETHHHHHHHHHHHHHHHH-TCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCE-EC--------------------
T ss_pred eHHHHHHHHHHHHHhhhh-cCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCcc-ccCCC-----------------
Confidence 999999999998874211 11245789999974 6899999999999999976543 22210
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+ .+ .......+|++|++++|||+|+++++|+++++++|++++...
T Consensus 295 ------~--~~----~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 295 ------A--HP----HEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp ----------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred ------C--CC----cCcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 0 00 012356789999999999999999999999999999887654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=346.81 Aligned_cols=314 Identities=15% Similarity=0.122 Sum_probs=241.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccccc------CCCCCCC----CCCC--CCCCCCeEEEEccCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQL------DPSESNS----LLPD--SLSSGRAEYHQVDVRD 74 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l------~r~~~~~----~~~~--~l~~~~~~~~~~Dl~d 74 (586)
.+++|||||||||||++++++|+++| ++|+++|+...... .+-.... .... .....+++++.+|+.|
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 57899999999999999999999999 59999765321000 0000000 0000 0012468899999999
Q ss_pred HHHHHHHhcC--CCEEEEcccCCC---CCCChh---HHHHHHHHHHHHHHHHHHhCCC-CEEEEecCccccccCCCCCCC
Q 007866 75 ISQIKKVLEG--ASTVFYVDATDL---NTDDFY---NCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 75 ~~~l~~~l~~--~D~Vih~aa~~~---~~~~~~---~~~~~Nv~gt~~lleaa~~~gv-kr~I~~SS~~vyg~~~~~~~~ 145 (586)
.+++.+++++ +|+|||+||... ...++. ..+++|+.|+.+++++|+++++ +||||+||.++||... .+
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~---~~ 165 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN---ID 165 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---SC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC---CC
Confidence 9999999987 999999999762 122343 4789999999999999999988 5999999999997543 24
Q ss_pred CCCCc------------ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----------------
Q 007866 146 GDETL------------TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------------- 196 (586)
Q Consensus 146 ~~E~~------------p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----------------- 196 (586)
.+|+. +.+..|.++|+.||..+|.+++.++.+.|++++++||+++|||+..
T Consensus 166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 245 (404)
T 1i24_A 166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245 (404)
T ss_dssp BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccc
Confidence 55542 1255778999999999999999887667999999999999999762
Q ss_pred --CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCC--cEEEEeCCCCcCHHHHHHHHHH
Q 007866 197 --QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAG--MAFFITNLEPIKFWDFLSIILE 272 (586)
Q Consensus 197 --~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g--~~~ni~~~~~~t~~ei~~~i~~ 272 (586)
..++.++..+..|+++.++++|++.++|+|++|+|++++.+++ .+...| ++||+++ +++|+.|+++.+.+
T Consensus 246 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~-----~~~~~g~~~~yni~~-~~~s~~e~~~~i~~ 319 (404)
T 1i24_A 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFT-EQFSVNELASLVTK 319 (404)
T ss_dssp TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECS-EEEEHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHh-----CcccCCCceEEEECC-CCCcHHHHHHHHHH
Confidence 4577788888888887788999999999999999999999998 344446 7999998 88999999999999
Q ss_pred H---cCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHH
Q 007866 273 G---LGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSS 349 (586)
Q Consensus 273 ~---~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~ 349 (586)
. +|.+.+...+|.+. . ........+|++|++ +|||+|++++++++++
T Consensus 320 ~~~~~g~~~~~~~~p~~~----------------------~-------~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~ 369 (404)
T 1i24_A 320 AGSKLGLDVKKMTVPNPR----------------------V-------EAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDS 369 (404)
T ss_dssp HHHTTTCCCCEEEECCSS----------------------C-------SCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHH
T ss_pred HHHhhCCCccccccCccc----------------------C-------ccccceEecCHHHHH-HcCCCcCcCHHHHHHH
Confidence 8 77765544444210 0 000123567999998 6999999999999999
Q ss_pred HHHHHHHhhhc
Q 007866 350 TIQSFSHLARD 360 (586)
Q Consensus 350 ~i~~~~~~~~~ 360 (586)
+++|++.....
T Consensus 370 ~~~~~~~~~~~ 380 (404)
T 1i24_A 370 LLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhhhhc
Confidence 99999876544
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=330.69 Aligned_cols=276 Identities=18% Similarity=0.192 Sum_probs=233.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|+|||||||||||++++++|+++| ++|++ +.|. .+|+.|.+++.++++ ++|
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~------------------~~D~~d~~~~~~~~~~~~~d 58 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEE-YDIYP--------FDKK------------------LLDITNISQVQQVVQEIRPH 58 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTT-EEEEE--------ECTT------------------TSCTTCHHHHHHHHHHHCCS
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CEEEE--------eccc------------------ccCCCCHHHHHHHHHhcCCC
Confidence 499999999999999999999999 59999 5551 379999999999998 799
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+|+... ...++...+++|+.++.+++++|++.|+ |+||+||.++|+... ..+.+|+. +..|.++|+.+
T Consensus 59 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~--~~~~~E~~--~~~p~~~Y~~s 133 (287)
T 3sc6_A 59 IIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDR--PEGYDEFH--NPAPINIYGAS 133 (287)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCC--SSCBCTTS--CCCCCSHHHHH
T ss_pred EEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCC--CCCCCCCC--CCCCCCHHHHH
Confidence 9999999873 3467899999999999999999999998 799999999996533 34678887 45889999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|++++.++. +++++||+.+|||+...+++.++..+..+.++.+.++ +.++|+|++|+|++++.+++
T Consensus 134 K~~~E~~~~~~~~----~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~---- 203 (287)
T 3sc6_A 134 KYAGEQFVKELHN----KYFIVRTSWLYGKYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIH---- 203 (287)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhCC----CcEEEeeeeecCCCCCcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHh----
Confidence 9999999999854 5799999999999888888999999998988777764 88999999999999999987
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
.+. +++||+++++++|+.|+++.+++.+|.+.+...+|.... .... ..+ ..
T Consensus 204 -~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~~~~-~~~-----------~~ 254 (287)
T 3sc6_A 204 -TSL--YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEF--------------GAAA-ARP-----------KY 254 (287)
T ss_dssp -SCC--CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHH--------------CCSS-CCC-----------SB
T ss_pred -CCC--CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhc--------------Cccc-CCC-----------Cc
Confidence 233 779999999999999999999999998876666664321 1000 111 24
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
..+|++|++ +|||+|.++++++++++++|+++
T Consensus 255 ~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 255 SIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp CCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred ccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 568999999 79999999999999999999864
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=339.07 Aligned_cols=295 Identities=14% Similarity=0.120 Sum_probs=232.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+|+|||||||||||++++++|+++ | ++|+++++ .+..... ..+++++.+|+.|.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r--------~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDI--------RKLNTDV-----VNSGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEES--------CCCSCHH-----HHSSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcC--------CCccccc-----cCCCceEEecCCCHHHHHHHHhhc
Confidence 578999999999999999999999 7 59999544 3221100 1256789999999999999998
Q ss_pred CCCEEEEcccCCC--CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 84 GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 84 ~~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.|++||||+||.++|+.... ..+.+|+. +..|.++|+
T Consensus 68 ~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~--~~~~~~~Y~ 144 (312)
T 2yy7_A 68 KITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTP-KENTPQYT--IMEPSTVYG 144 (312)
T ss_dssp TCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSC-SSSBCSSC--BCCCCSHHH
T ss_pred CCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCC-CCCccccC--cCCCCchhH
Confidence 8999999999862 235678899999999999999999999999999999999975432 23566766 457889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------C-cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (586)
.+|..+|.+++.++.++|++++++||+.+||++.. . ..+.+.+.+..+. +..++++++.++|+|++|+|+++
T Consensus 145 ~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 145 ISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKK-YECFLSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSE-EEESSCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCC-eEEecCCCceeeeeeHHHHHHHH
Confidence 99999999999987767999999999999997532 1 3444555555554 56778889999999999999999
Q ss_pred HHHHHHhhcccccC---CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 235 VCAAEALDSRMVSV---AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 235 ~~ale~~~~~~~~~---~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
+.+++. +.. .+++||+++ +++|+.|+++.+.+.+|.. .....| .
T Consensus 224 ~~~~~~-----~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~~-~i~~~~--------------------------~ 270 (312)
T 2yy7_A 224 INIMKA-----PVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPEF-TITYEP--------------------------D 270 (312)
T ss_dssp HHHHHS-----CGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTTC-EEEECC--------------------------C
T ss_pred HHHHhC-----cccccccCceEEeCC-CccCHHHHHHHHHHHCCCC-ceEecc--------------------------C
Confidence 999983 322 248999997 8899999999999998831 111111 0
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
...... ...+..+|++|++++|||+|+++++|+++++++||+
T Consensus 271 -~~~~~~-~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 271 -FRQKIA-DSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp -THHHHH-TTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred -cccccc-ccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 111110 112457899999999999999999999999999984
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.80 Aligned_cols=307 Identities=19% Similarity=0.224 Sum_probs=234.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
|+||||||+||||++++++|+++|+ +|+++|+... +... .... .....++.++.+|+.|.+++.++++ +
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCN----SKRS--VLPVIERLGGKHPTFVEGDIRNEALMTEILHDHA 73 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS----CCTT--HHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCC----cchh--HHHHHHhhcCCcceEEEccCCCHHHHHHHhhccC
Confidence 5899999999999999999999994 9999664321 1000 0000 0012357889999999999999886 5
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||+||... ...++...+++|+.++.+++++|++.+++|+||+||.++||.. ...+.+|+.|. ..+.++|+
T Consensus 74 ~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~--~~~~~~e~~~~-~~~~~~Y~ 150 (338)
T 1udb_A 74 IDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDN--PKIPYVESFPT-GTPQSPYG 150 (338)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSC--CSSSBCTTSCC-CCCSSHHH
T ss_pred CCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCC--CCCCcCcccCC-CCCCChHH
Confidence 999999999752 2345678899999999999999999999999999999999753 23456777642 12378999
Q ss_pred HHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCC------------CCcHHHHHHHhc-CCCceEEEc------CCCcc
Q 007866 162 DLKAQAEALVLFANNID-GLLTCALRPSNVFGPGD------------TQLVPLLVNLAK-PGWTKFIIG------SGENM 221 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~-gl~~~ilRp~~v~G~~~------------~~~~~~l~~~~~-~g~~~~i~g------~g~~~ 221 (586)
.||..+|.+++.++.+. |++++++||+++|||.. ..+++.+.+... .+..+.+++ +|++.
T Consensus 151 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~ 230 (338)
T 1udb_A 151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230 (338)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCcee
Confidence 99999999999987655 89999999999999842 123555555544 455555655 57788
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~ 301 (586)
++|+|++|+|++++.+++... ....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 231 ~~~i~v~Dva~a~~~~l~~~~---~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--------------- 292 (338)
T 1udb_A 231 RDYIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR--------------- 292 (338)
T ss_dssp ECEEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCC---------------
T ss_pred eeeEEHHHHHHHHHHHHhhhh---ccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCC---------------
Confidence 999999999999999987421 11223799999999999999999999999987554333210
Q ss_pred hccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
. ..+ ....+|++|++++|||+|+++++|+++++++|++++..
T Consensus 293 ---~--~~~-----------~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 293 ---E--GDL-----------PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp ---T--TCC-----------SBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred ---C--Cch-----------hhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhccc
Confidence 0 000 23567999999999999999999999999999987643
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=334.21 Aligned_cols=279 Identities=17% Similarity=0.160 Sum_probs=225.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC-C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG-A 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~-~ 85 (586)
++|+||||| +||||++++++|+++|+ +|++ +.|.+.. ...+++++.+|+.|.+++.+++++ +
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~-~V~~--------~~r~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~~~ 64 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGH-EVTG--------LRRSAQP-------MPAGVQTLIADVTRPDTLASIVHLRP 64 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTC-CEEE--------EECTTSC-------CCTTCCEEECCTTCGGGCTTGGGGCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCC-EEEE--------EeCCccc-------cccCCceEEccCCChHHHHHhhcCCC
Confidence 468999999 59999999999999994 9999 4444332 135789999999999999999988 9
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
|+|||+|+.. ..++...+++|+.++.+++++|++.+++||||+||.++||.. ...+.+|+. +..|.++|+.+|.
T Consensus 65 d~vih~a~~~--~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK~ 138 (286)
T 3gpi_A 65 EILVYCVAAS--EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQE--VEEWLDEDT--PPIAKDFSGKRML 138 (286)
T ss_dssp SEEEECHHHH--HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCC--CSSEECTTS--CCCCCSHHHHHHH
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCC--CCCCCCCCC--CCCCCChhhHHHH
Confidence 9999999974 345677889999999999999999999999999999999754 334668877 4578999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccc
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~ 245 (586)
.+|++ +.+ ++++++||+++|||+.. .++..+.+ +. .+++++..++|+|++|+|++++.+++...
T Consensus 139 ~~E~~-~~~-----~~~~ilR~~~v~G~~~~----~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~--- 202 (286)
T 3gpi_A 139 EAEAL-LAA-----YSSTILRFSGIYGPGRL----RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRS--- 202 (286)
T ss_dssp HHHHH-GGG-----SSEEEEEECEEEBTTBC----HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHT---
T ss_pred HHHHH-Hhc-----CCeEEEecccccCCCch----hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhc---
Confidence 99999 664 89999999999999875 34455555 33 34778899999999999999999998321
Q ss_pred ccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcccee
Q 007866 246 VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRT 325 (586)
Q Consensus 246 ~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (586)
....+++||+++++++|+.|+++.+.+.+|.+.+....| .......
T Consensus 203 ~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----------------------------------~~~~~~~ 248 (286)
T 3gpi_A 203 HAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----------------------------------PVQGNKK 248 (286)
T ss_dssp TSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----------------------------------CBCSSCE
T ss_pred cCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----------------------------------ccCCCeE
Confidence 146688999999999999999999999999876543211 0123567
Q ss_pred echhhHhhccCCCCCC-ChHHHHHHHHHHHHHhhh
Q 007866 326 FDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 326 ~d~~ka~~~LG~~p~~-~lee~i~~~i~~~~~~~~ 359 (586)
+|++|++ +|||+|++ +++|+++++++|+.....
T Consensus 249 ~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 249 LSNARLL-ASGYQLIYPDYVSGYGALLAAMREGHH 282 (286)
T ss_dssp ECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC---
T ss_pred eeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhcccc
Confidence 8999998 89999999 699999999999976543
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=339.29 Aligned_cols=297 Identities=18% Similarity=0.155 Sum_probs=237.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+|||||||||||++++++|+++|.++|+++++.. ..... ..+ .++. +.+|+.|.+.+.++++
T Consensus 45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~--------~~~~~-~~~--~~~~-~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLK--------DGTKF-VNL--VDLN-IADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCS--------SGGGG-GGT--TTSC-CSEEEEHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCC--------Ccchh-hcc--cCce-EeeecCcHHHHHHHHhhcc
Confidence 4589999999999999999999999944899955432 21101 011 1233 6789999999999987
Q ss_pred --CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 84 --GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 84 --~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.++ ||||+||.++||... ..+.+|+. +..|.++|
T Consensus 113 ~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~--~~~~~E~~--~~~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRT--SDFIESRE--YEKPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCS--SCCCSSGG--GCCCSSHH
T ss_pred cCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCC--CCCcCCcC--CCCCCChh
Confidence 5999999999864 3567889999999999999999999999 999999999997533 33678877 45788999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCc-cccccchhHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHA 233 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~a 233 (586)
+.+|..+|.+++.++.+.|++++++||+++|||+.. ..++.++..+.+++.+.+++++++ .++|+|++|+|++
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 267 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV 267 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHH
Confidence 999999999999998878999999999999999864 466778888888888788888888 9999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCC-CCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~-~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
++.+++. +. +++||+++++++|+.|+++.+.+.+|.+ ...+..|.+. .+
T Consensus 268 i~~~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~~--------- 317 (357)
T 2x6t_A 268 NLWFLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL--------------KG--------- 317 (357)
T ss_dssp HHHHHHH-----CC--CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCGGG--------------TT---------
T ss_pred HHHHHhc-----CC--CCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCccc--------------cc---------
Confidence 9999983 33 8899999999999999999999999987 2223333210 00
Q ss_pred cHHHHHHhccceeechhhHhhccCC-CCCCChHHHHHHHHHHHHHh
Q 007866 313 ACYIVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 313 ~~~~~~~~~~~~~~d~~ka~~~LG~-~p~~~lee~i~~~i~~~~~~ 357 (586)
.......+|++|+++ ||| .|.++++|+++++++|++++
T Consensus 318 ------~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 318 ------RYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp ------SCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred ------ccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 011235678999986 999 78889999999999999653
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=337.98 Aligned_cols=321 Identities=17% Similarity=0.126 Sum_probs=246.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC----cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK----CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~----~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|+|||||||||||++++++|+++|. ++|+++++. +.... ....+++++.+|+.|.+++.++++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~--------~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~ 68 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR--------TRPAW----HEDNPINYVQCDISDPDDSQAKLS 68 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESS--------CCCSC----CCSSCCEEEECCTTSHHHHHHHHT
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCC--------CCccc----cccCceEEEEeecCCHHHHHHHHh
Confidence 37899999999999999999999992 389995543 32211 123578999999999999999999
Q ss_pred C---CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEE-------EecCccccccCCCCCCCCCCCcc
Q 007866 84 G---ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLV-------YNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 ~---~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I-------~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
+ +|+|||+|+.. ..++...+++|+.++.+++++|+++ +++|+| |+||.++||.......+.+|+.|
T Consensus 69 ~~~~~d~vih~a~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 69 PLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp TCTTCCEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred cCCCCCEEEECCCCC--cchHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 8 99999999986 3568899999999999999999998 899998 89999999865433446788775
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCCCCc----HHH-HHHHh--cCCCceEEEcCCC---c
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQL----VPL-LVNLA--KPGWTKFIIGSGE---N 220 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~~g-l~~~ilRp~~v~G~~~~~~----~~~-l~~~~--~~g~~~~i~g~g~---~ 220 (586)
.. .+.+.| ..+|++++++++++| ++++++||+++|||++... ++. +.+.+ .+|.++.++++++ .
T Consensus 147 ~~-~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 221 (364)
T 2v6g_A 147 RL-KYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDG 221 (364)
T ss_dssp CC-SSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHS
T ss_pred CC-ccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccc
Confidence 31 235678 458999999887677 9999999999999986532 233 34444 3677666778774 4
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHH---HH
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIIL---LV 295 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i--~vp~~~~~~~~~---~~ 295 (586)
..+++|++|+|++++.+++ .+...|++||+++++++|+.|+++.+.+.+|.+.+.+ .+|.+++..++. ..
T Consensus 222 ~~~~~~v~Dva~a~~~~~~-----~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~ 296 (364)
T 2v6g_A 222 YSDCSDADLIAEHHIWAAV-----DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVW 296 (364)
T ss_dssp CBCCEEHHHHHHHHHHHHH-----CGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHh-----CCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHH
Confidence 4777888999999999998 3445788999999999999999999999999887666 788877766655 33
Q ss_pred HHHHHHhccccCCCCCCcHHHH-------HHhccc-eeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 296 KWIHEKLGLRTYNHSLSACYIV-------QLASRT-RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
+.+....+. .+ ...... ..+..+ ..+|++|+++ |||+|.++++|+++++++|++++.
T Consensus 297 ~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 297 EEIVRENGL----TP-TKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHHHHHTTC----CC-CCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCC----Cc-cccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 333222221 11 111111 112245 5899999988 999998999999999999998753
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=332.78 Aligned_cols=294 Identities=18% Similarity=0.154 Sum_probs=217.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC-----
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG----- 84 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~----- 84 (586)
+|||||||||||++++++|+++|.++|+++++. +...... .+ .++. +.+|+.|.+.+.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~--------~~~~~~~-~~--~~~~-~~~d~~~~~~~~~~~~~~~~~~ 68 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL--------KDGTKFV-NL--VDLN-IADYMDKEDFLIQIMAGEEFGD 68 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC--------SSGGGGH-HH--HTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC--------CCCchhh-hc--Ccce-eccccccHHHHHHHHhccccCC
Confidence 589999999999999999999993489985443 2211000 00 1223 67899999999999975
Q ss_pred CCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|+|||+|+... ...++...+++|+.++.+++++|+++|+ |+||+||.++||... ..+.+|+. +..|.++|+.+
T Consensus 69 ~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~--~~~~~E~~--~~~p~~~Y~~s 143 (310)
T 1eq2_A 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRT--SDFIESRE--YEKPLNVYGYS 143 (310)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCC--SCBCSSGG--GCCCSSHHHHH
T ss_pred CcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCC--CCCCCCCC--CCCCCChhHHH
Confidence 999999999874 4567889999999999999999999999 999999999997533 23678877 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCc-cccccchhHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVC 236 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~ai~~ 236 (586)
|..+|.+++.++.+.|++++++||+.+|||+.. ..++.+++.+.+++++.++++|++ .++|+|++|+|++++.
T Consensus 144 K~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~ 223 (310)
T 1eq2_A 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (310)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHH
Confidence 999999999998878999999999999999864 567778888888888778888889 9999999999999999
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCC-CCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQ-RPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~-~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
+++. +. +++||+++++++|+.|+++.+.+.+|.+ ......|.+.
T Consensus 224 ~~~~-----~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~---------------------------- 268 (310)
T 1eq2_A 224 FLEN-----GV--SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKL---------------------------- 268 (310)
T ss_dssp HHHH-----CC--CEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred HHhc-----CC--CCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCChhh----------------------------
Confidence 9983 33 7899999999999999999999999876 2222222110
Q ss_pred HHHHhccceeechhhHhhccCC-CCCCChHHHHHHHHHHHHHh
Q 007866 316 IVQLASRTRTFDCIAAQKHIGY-SPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~-~p~~~lee~i~~~i~~~~~~ 357 (586)
.........+|++|+++ ||| .|.++++|+++++++||+++
T Consensus 269 -~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 269 -KGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp ----CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred -hcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 00011245678999986 999 78889999999999998653
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=328.84 Aligned_cols=291 Identities=16% Similarity=0.162 Sum_probs=232.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 4 DEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 4 ~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
....+|+||||||+||||++++++|+++| ++|+++++.. .... ....+ .+++++.+|+.|.+++.+++
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~~~~~~~l--~~v~~~~~Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFA--------TGKREVLPPV--AGLSVIEGSVTDAGLLERAF 84 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCS--------SSCGGGSCSC--TTEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCC--------ccchhhhhcc--CCceEEEeeCCCHHHHHHHH
Confidence 34567899999999999999999999999 5999955432 1100 00111 47899999999999999999
Q ss_pred c--CCCEEEEcccCCCC--CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 83 E--GASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 83 ~--~~D~Vih~aa~~~~--~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+ ++|+|||+||.... ..++. +++|+.++.+++++|.+.+++||||+||.++|+.......+.+|+. .|.+
T Consensus 85 ~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~----~~~~ 158 (330)
T 2pzm_A 85 DSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT----APFT 158 (330)
T ss_dssp HHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC----CCCS
T ss_pred hhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC----CCCC
Confidence 8 99999999998642 23344 8999999999999999999999999999999965322111566654 5778
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHH-HHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH-AHVC 236 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~-ai~~ 236 (586)
+|+.+|..+|.+++.+ +++.+++||+++|||+.. ..++.++..+..+. .+++++. .++|+|++|+|+ +++.
T Consensus 159 ~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~ 231 (330)
T 2pzm_A 159 SYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLS 231 (330)
T ss_dssp HHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCCSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHH
Confidence 9999999999999986 789999999999999863 45666777776666 4556667 899999999999 9998
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (586)
+++ .+. |++||+++++++|+.|+++.+.+.+|.+ +...+|.+ +
T Consensus 232 ~~~-----~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~-----------------------~------ 274 (330)
T 2pzm_A 232 LQE-----GRP--TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVV-----------------------A------ 274 (330)
T ss_dssp TST-----TCC--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEE-----------------------C------
T ss_pred Hhh-----cCC--CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCC-----------------------c------
Confidence 877 233 8899999999999999999999999987 44333321 0
Q ss_pred HHHhccceeechhhH-----hhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 317 VQLASRTRTFDCIAA-----QKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 317 ~~~~~~~~~~d~~ka-----~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
......+|++|+ ++ |||+|+++++++++++++|+++...
T Consensus 275 ---~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 275 ---PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp ---CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHCS
T ss_pred ---chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHHHHHHHHhhCc
Confidence 012456788888 77 9999999999999999999987643
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=331.63 Aligned_cols=322 Identities=16% Similarity=0.091 Sum_probs=241.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC------CCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL------SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l------~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+|+||||||+||||++++++|+++| ++|+++++.... .. ...+.... ...+++++.+|+.|.+++.++
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~----~~-~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 97 (375)
T 1t2a_A 24 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSS----FN-TGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKI 97 (375)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSS----CC-CTTTGGGC---------CEEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccc----cc-hhhHHHHhhhhccccCCCceEEEccCCCHHHHHHH
Confidence 3799999999999999999999999 599996654310 00 00111110 234688999999999999999
Q ss_pred hcC--CCEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCC---CEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 82 LEG--ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 82 l~~--~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gv---kr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
+++ +|+|||+|+.... ..++...+++|+.++.+++++|.+.++ +||||+||.++|+... ..+.+|+.|
T Consensus 98 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~~-- 173 (375)
T 1t2a_A 98 INEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ--EIPQKETTP-- 173 (375)
T ss_dssp HHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS--SSSBCTTSC--
T ss_pred HHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC--CCCCCccCC--
Confidence 985 6999999998632 356788999999999999999999998 8999999999997533 346778774
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEEcCCCccccccch
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTYV 227 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v 227 (586)
..|.++|+.+|..+|.+++.++.+++++++++||+++|||+... . +..++..+.+|. ....++++++.++|+|+
T Consensus 174 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v 253 (375)
T 1t2a_A 174 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHA 253 (375)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEH
Confidence 46789999999999999999887679999999999999997542 2 234444555554 33567889999999999
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhccc
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i--~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
+|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++.. .++..
T Consensus 254 ~Dva~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~----------~~~~~ 316 (375)
T 1t2a_A 254 KDYVEAMWLMLQ-----NDE--PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCK----------ETGKV 316 (375)
T ss_dssp HHHHHHHHHHHH-----SSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEET----------TTCCE
T ss_pred HHHHHHHHHHHh-----cCC--CceEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccccc----------ccccc
Confidence 999999999988 222 47999999999999999999999999864311 133221100 00000
Q ss_pred --cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 306 --TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 306 --~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
....+...+. ......+|++|++++|||+|+++++|+++++++|+++....
T Consensus 317 ~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 317 HVTVDLKYYRPT----EVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp EEEECGGGSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeecCcccCCcc----cchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 0000000000 01235679999999999999999999999999999987654
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=334.11 Aligned_cols=331 Identities=16% Similarity=0.110 Sum_probs=239.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-----CCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-----SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-----~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
||+||||||+||||++++++|+++| ++|+++++.... .. ...+.... ...+++++.+|+.|.+++.+++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 74 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASS----FN-TERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRIL 74 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC--------------------------CCEEECCCCSSCHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcc----cc-hHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH
Confidence 5899999999999999999999999 599995543210 00 00111110 1246889999999999999999
Q ss_pred cC--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCC---CEEEEecCccccccCCCCCCCCCCCcccCC
Q 007866 83 EG--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (586)
Q Consensus 83 ~~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gv---kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (586)
++ +|+|||+|+... ...++...+++|+.++.+++++|+++++ ++|||+||.++||... ..+.+|+.| .
T Consensus 75 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~--~~~~~E~~~--~ 150 (372)
T 1db3_A 75 REVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETTP--F 150 (372)
T ss_dssp HHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTSC--C
T ss_pred HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC--CCCCCccCC--C
Confidence 85 799999999763 3456788999999999999999999998 8999999999997543 336677764 4
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCCc-eEEEcCCCccccccchh
Q 007866 155 KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGWT-KFIIGSGENMSDFTYVE 228 (586)
Q Consensus 155 ~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~ 228 (586)
.|.++|+.+|..+|.+++.++.+++++++++|++++|||+... . +..++..+.+|+. ...++++++.++|+|++
T Consensus 151 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~ 230 (372)
T 1db3_A 151 YPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (372)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHH
Confidence 7789999999999999999887779999999999999997542 2 3445556666753 45678999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCcc--CCHH-HHHHHHHHHHHHHHHhcc-
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK--LPTG-VVWYIILLVKWIHEKLGL- 304 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~--vp~~-~~~~~~~~~~~~~~~~~~- 304 (586)
|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+... +|.+ ++..+. ..+......+.
T Consensus 231 Dva~a~~~~~~-----~~~--~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~ 302 (372)
T 1db3_A 231 DYVKMQWMMLQ-----QEQ--PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVT-GHDAPGVKPGDV 302 (372)
T ss_dssp HHHHHHHHTTS-----SSS--CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEEC-SSSCTTCCTTCE
T ss_pred HHHHHHHHHHh-----cCC--CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccc-cccccccccccc
Confidence 99999998876 222 479999999999999999999999987543111 1110 000000 00000000000
Q ss_pred -ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 305 -RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.........+. ......+|++|++++|||+|+++++|+++++++||+++...
T Consensus 303 ~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 355 (372)
T 1db3_A 303 IIAVDPRYFRPA----EVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (372)
T ss_dssp EEEECGGGCCCC----C-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred eeeccccccCCC----chhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhc
Confidence 00000000000 01245679999999999999999999999999999987654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=330.54 Aligned_cols=290 Identities=13% Similarity=0.043 Sum_probs=230.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~D 86 (586)
|+|||||||||||++++++|+ +| ++|++ +.|.+. .+.+|+.|.+++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~--------~~r~~~--------------~~~~D~~d~~~~~~~~~~~~~d 56 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIA--------LDVHSK--------------EFCGDFSNPKGVAETVRKLRPD 56 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEE--------ECTTCS--------------SSCCCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEE--------eccccc--------------cccccCCCHHHHHHHHHhcCCC
Confidence 589999999999999999999 89 59999 455431 246899999999999986 99
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+|+... ...++...+++|+.++.+++++|++.|+ |+||+||.++||... ..+.+|+. +..|.++|+.+
T Consensus 57 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~--~~~~~E~~--~~~p~~~Y~~s 131 (299)
T 1n2s_A 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTG--DIPWQETD--ATSPLNVYGKT 131 (299)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCT--TCCBCTTS--CCCCSSHHHHH
T ss_pred EEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCC--CCCCCCCC--CCCCccHHHHH
Confidence 9999999863 3567889999999999999999999998 899999999997543 34677877 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|++++.++. +++++||+.+|||+...+++.++..+..+.++.+.++ +.++|+|++|+|++++.+++...
T Consensus 132 K~~~E~~~~~~~~----~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~- 204 (299)
T 1n2s_A 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVAL- 204 (299)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCC----CeEEEeeeeecCCCcCcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhc-
Confidence 9999999999753 7999999999999877777888888888887666654 78999999999999999988310
Q ss_pred ccccC-CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 244 RMVSV-AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 244 ~~~~~-~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
... .+++||+++++++|+.|+++.+.+.+|.+.+.+.+|... ..... ..+... ....
T Consensus 205 --~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~-------------~~~~~--~~~~~~-----~~~~ 262 (299)
T 1n2s_A 205 --NKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELN-------------AVPTS--AYPTPA-----SRPG 262 (299)
T ss_dssp --HCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEE-------------EECST--TSCCSS-----CCCS
T ss_pred --cccccCceEEEeCCCCCCHHHHHHHHHHHhCCCcccccccccc-------------ccccc--cccCcC-----CCCC
Confidence 012 478999999999999999999999998764322211000 00000 000000 0013
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
...+|++|++++|||+|+ +++|+++++++||+++
T Consensus 263 ~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 263 NSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp BCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred ceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHhc
Confidence 567899999999999998 9999999999999864
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=321.58 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=228.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
..|+|||||||||||++++++|+++| ++|++ +.|. .+|+.|.+++.++++ +
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~------------------~~Dl~d~~~~~~~~~~~~ 63 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKN-VEVIP--------TDVQ------------------DLDITNVLAVNKFFNEKK 63 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSS-EEEEE--------ECTT------------------TCCTTCHHHHHHHHHHHC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCC-CeEEe--------ccCc------------------cCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999999999 59999 4543 279999999999998 7
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|||+|+... ...++...+++|+.++.+++++|++.|+ |+||+||.++|+... ..+.+|+.| ..|.++|+
T Consensus 64 ~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~--~~~~~E~~~--~~~~~~Y~ 138 (292)
T 1vl0_A 64 PNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEA--KEPITEFDE--VNPQSAYG 138 (292)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCC--SSCBCTTSC--CCCCSHHH
T ss_pred CCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCC--CCCCCCCCC--CCCccHHH
Confidence 999999999863 2357889999999999999999999998 999999999997532 346778774 47889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHh
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~ 241 (586)
.+|..+|.+++.++. +++++||+.+||| ...+++.++..+..+.++.+.+ ++.++|+|++|+|++++.+++.
T Consensus 139 ~sK~~~E~~~~~~~~----~~~~lR~~~v~G~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~- 210 (292)
T 1vl0_A 139 KTKLEGENFVKALNP----KYYIVRTAWLYGD-GNNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE- 210 (292)
T ss_dssp HHHHHHHHHHHHHCS----SEEEEEECSEESS-SSCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCC----CeEEEeeeeeeCC-CcChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhc-
Confidence 999999999999753 5899999999999 5567777777777777766665 4789999999999999999882
Q ss_pred hcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhc
Q 007866 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLAS 321 (586)
Q Consensus 242 ~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (586)
+ .+++||+++++++|+.|+++.+.+.+|.+.+...+|.+.. . .+.. ..
T Consensus 211 ----~--~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--------------~-----~~~~-------~~ 258 (292)
T 1vl0_A 211 ----K--NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEF--------------P-----RPAK-------RP 258 (292)
T ss_dssp ----T--CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTS--------------C-----CSSC-------CC
T ss_pred ----C--CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeecccccc--------------C-----cccC-------CC
Confidence 3 6789999999999999999999999998765444443210 0 0000 01
Q ss_pred cceeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 322 ~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
....+|++|++++|||+|+ +++++++++++||+
T Consensus 259 ~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 259 KYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 291 (292)
T ss_dssp SBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhc
Confidence 2467899999999999999 99999999999985
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.12 Aligned_cols=320 Identities=15% Similarity=0.125 Sum_probs=240.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC---CCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL---LPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~---~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+||||||+||||++++++|+++| ++|+++++ .+.+.. +.......+++++.+|+.|.+++.++++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 72 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADR--------RSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIE 72 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECS--------CCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEC--------CCcccccccHhhccccCceeEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 59999544 332110 0011112468899999999999999998
Q ss_pred C--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 84 G--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV-RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 84 ~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gv-kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+ +|+|||+||... ...++...+++|+.|+.+++++|.+.++ +||||+||.++||... ..+.+|+.| ..|.
T Consensus 73 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~e~~~--~~~~ 148 (345)
T 2z1m_A 73 KVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQ--EIPQTEKTP--FYPR 148 (345)
T ss_dssp HHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCS--SSSBCTTSC--CCCC
T ss_pred hcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC--CCCCCccCC--CCCC
Confidence 5 699999999863 2567889999999999999999999887 8999999999997543 335677764 4778
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCCc-eEEEcCCCccccccchhHHH
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGWT-KFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~~-~~i~g~g~~~~~~i~v~Dva 231 (586)
++|+.+|..+|.+++.++.+.+++++++|++++|||+... . +..++..+..|+. ...++++...++|+|++|+|
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva 228 (345)
T 2z1m_A 149 SPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYV 228 (345)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHH
Confidence 9999999999999999887678999999999999997542 2 2333444455543 34678888999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc--cCCHHHHHHHHHHHHHHHHHhccc--cC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI--KLPTGVVWYIILLVKWIHEKLGLR--TY 307 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i--~vp~~~~~~~~~~~~~~~~~~~~~--~~ 307 (586)
++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+.. .+|.+++. ...+.. ..
T Consensus 229 ~a~~~~~~-----~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~----------~~~~~~~~~~ 291 (345)
T 2z1m_A 229 EAMWLMMQ-----QPE--PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGID----------RNTGKVIVEV 291 (345)
T ss_dssp HHHHHHHT-----SSS--CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEE----------TTTCCEEEEE
T ss_pred HHHHHHHh-----CCC--CceEEEeCCCCccHHHHHHHHHHHhCCCcccccccccccccc----------cccccccccc
Confidence 99999887 222 46999999999999999999999999864321 13322110 000000 00
Q ss_pred CCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
..+...+. ......+|++|++++|||+|+++++|+++++++|+.++...
T Consensus 292 ~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 292 SEEFFRPA----EVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp CGGGSCSS----CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCC----CcceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhcc
Confidence 00000000 01235679999999999999999999999999999987654
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=333.50 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=237.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-----CC-CeEEEEccCCCHHHHHHHh
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-----SG-RAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~-----~~-~~~~~~~Dl~d~~~l~~~l 82 (586)
|+||||||+||||++++++|+++| ++|+++++.... .. ...+..... .. +++++.+|+.|.+++.+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 102 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSN----FN-TQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWI 102 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSS----CC-CTTTTTTC--------CCEEEEECCTTCHHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCcc----cc-chhhhhhhhccccccccceEEEECCCCCHHHHHHHH
Confidence 799999999999999999999999 599996554310 00 000111110 12 6889999999999999999
Q ss_pred cC--CCEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCC-----EEEEecCccccccCCCCCCCCCCCccc
Q 007866 83 EG--ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVR-----RLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 83 ~~--~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvk-----r~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
++ +|+|||+|+.... ..++...+++|+.++.+++++|.+.+++ ||||+||.++||.... +.+|+.|
T Consensus 103 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~---~~~E~~~- 178 (381)
T 1n7h_A 103 DVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP---PQSETTP- 178 (381)
T ss_dssp HHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS---SBCTTSC-
T ss_pred HhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC---CCCCCCC-
Confidence 85 6999999998632 3568889999999999999999998876 9999999999975432 6788774
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----HHHHHHHhcCCC-ceEEEcCCCccccccc
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----VPLLVNLAKPGW-TKFIIGSGENMSDFTY 226 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~~~l~~~~~~g~-~~~i~g~g~~~~~~i~ 226 (586)
..|.++|+.+|..+|.+++.++.+.|++++++|++++|||+... . +..++..+.+|. ....++++++.++|+|
T Consensus 179 -~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~ 257 (381)
T 1n7h_A 179 -FHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGF 257 (381)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEE
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEE
Confidence 47889999999999999999887678999999999999997542 2 233444455554 3346788899999999
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhccc
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLR 305 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~-~i~vp~~~~~~~~~~~~~~~~~~~~~ 305 (586)
++|+|++++.+++ .+. +++||+++++++|+.|+++.+.+.+|.+.+ .+.++...
T Consensus 258 v~Dva~a~~~~~~-----~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~------------------ 312 (381)
T 1n7h_A 258 AGDYVEAMWLMLQ-----QEK--PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRY------------------ 312 (381)
T ss_dssp HHHHHHHHHHHHT-----SSS--CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGG------------------
T ss_pred HHHHHHHHHHHHh-----CCC--CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCccc------------------
Confidence 9999999999887 222 479999999999999999999999997532 11111000
Q ss_pred cCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhcc
Q 007866 306 TYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (586)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~ 361 (586)
..+. ......+|++|++++|||+|+++++++++++++||.++....
T Consensus 313 --~~~~--------~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 358 (381)
T 1n7h_A 313 --FRPA--------EVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKRE 358 (381)
T ss_dssp --SCSS--------CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcc--------ccccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhcccc
Confidence 0000 012356799999999999999899999999999998876543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=325.92 Aligned_cols=291 Identities=17% Similarity=0.167 Sum_probs=230.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCC-CCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSS-GRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~-~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..||+|||||||||||++++++|+++| ++|+++++.. ... ...+.. .+++++.+|+.|.+++.+++++
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~--~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFA--------TGR--REHLKDHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCS--------SCC--GGGSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCC--------ccc--hhhHhhcCCceEEEEeCCCHHHHHHHHhc
Confidence 457899999999999999999999999 5999955432 110 001111 4789999999999999999988
Q ss_pred --CCEEEEcccCCCC--CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccC--CCCCCCCCCCcccCCCCC-
Q 007866 85 --ASTVFYVDATDLN--TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDG--SHDIHNGDETLTCCWKFQ- 157 (586)
Q Consensus 85 --~D~Vih~aa~~~~--~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~--~~~~~~~~E~~p~~~~p~- 157 (586)
+|+|||+|+.... ..++. +++|+.++.+++++|.+.+++||||+||.++||.. .... +.+|+. .|.
T Consensus 88 ~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~----~p~~ 160 (333)
T 2q1w_A 88 LQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR----NPAN 160 (333)
T ss_dssp HCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC----CCTT
T ss_pred cCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC----CCCC
Confidence 9999999998633 23343 89999999999999999999999999999999721 1112 567764 566
Q ss_pred ChHHHHHHHHHHHHHh-hcCCCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHH
Q 007866 158 DLMCDLKAQAEALVLF-ANNIDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~-~~~~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (586)
++|+.+|..+|.+++. ++ +++++||+++|||+.. ..++.++..+.++. .+++ +++.++++|++|+|++++
T Consensus 161 ~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~ 232 (333)
T 2q1w_A 161 SSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATV 232 (333)
T ss_dssp CHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHH
Confidence 8999999999999998 75 7899999999999842 46677777777776 3455 678899999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 236 CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
.+++ .+. |++||+++++++|+.|+++.+.+.+|.+ +...+|... ..
T Consensus 233 ~~~~-----~~~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--------------------~~------ 278 (333)
T 2q1w_A 233 RAVD-----GVG--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE--------------------LG------ 278 (333)
T ss_dssp HHHT-----TCC--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE--------------------CC------
T ss_pred HHHh-----cCC--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC--------------------cc------
Confidence 9887 233 8899999999999999999999999987 433333210 00
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
.........+|++|++++ ||+|+++++++++++++||+++.
T Consensus 279 -~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 279 -PDDAPSILLDPSRTIQDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp -TTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -cccccccccCCHHHHHhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 001124567899999998 99999999999999999998764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=323.05 Aligned_cols=294 Identities=18% Similarity=0.141 Sum_probs=230.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
+||||||+||||++++++|+++ | ++|+++|+. .... .+++++.+|+.|.+++.++++ ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~--------~~~~--------~~~~~~~~D~~d~~~~~~~~~~~~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIV--------QRDT--------GGIKFITLDVSNRDEIDRAVEKYSI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESS--------CCCC--------TTCCEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCC--------Cccc--------cCceEEEecCCCHHHHHHHHhhcCC
Confidence 5899999999999999999998 7 589995442 2211 146789999999999999998 89
Q ss_pred CEEEEcccCCC--CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 86 STVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 86 D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
|+|||+|+... ...++...+++|+.++.+++++|++++++|+||+||.++|+.... ..+.+|+. +..|.++|+.+
T Consensus 64 d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-~~~~~e~~--~~~p~~~Y~~s 140 (317)
T 3ajr_A 64 DAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETP-KNKVPSIT--ITRPRTMFGVT 140 (317)
T ss_dssp CEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSC-SSSBCSSS--CCCCCSHHHHH
T ss_pred cEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCC-CCCccccc--cCCCCchHHHH
Confidence 99999999762 235678899999999999999999999999999999999975422 23456665 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------C-cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------Q-LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~-~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
|..+|.+++.++.++|++++++||+.+||+... . ..+.+.+.+..+. +..+++++..++|+|++|+|++++.
T Consensus 141 K~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~a~~~ 219 (317)
T 3ajr_A 141 KIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREK-YKCYLAPNRALPMMYMPDALKALVD 219 (317)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCC-EEECSCTTCCEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCC-ceeecCccceeeeeEHHHHHHHHHH
Confidence 999999999887767999999999999997531 1 2344444555554 4677788889999999999999999
Q ss_pred HHHHhhcccccC---CCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 237 AAEALDSRMVSV---AGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 237 ale~~~~~~~~~---~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
+++. +.. .|++||+++ +++|+.|+++.+.+.+|.. .....|. .
T Consensus 220 ~l~~-----~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i~~~~~---------------------------~ 265 (317)
T 3ajr_A 220 LYEA-----DRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPEF-EIEYKED---------------------------F 265 (317)
T ss_dssp HHHC-----CGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCSC-CEEECCC---------------------------H
T ss_pred HHhC-----CccccccCceEecCC-ccccHHHHHHHHHHHCCcc-ccccccc---------------------------c
Confidence 9882 221 357999986 6799999999999988732 1111111 0
Q ss_pred HHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 314 CYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 314 ~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.... ....+..+|++|++++|||+|+++++++++++++|++++..
T Consensus 266 ~~~~-~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 310 (317)
T 3ajr_A 266 RDKI-AATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLG 310 (317)
T ss_dssp HHHH-HTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred chhh-ccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhc
Confidence 0000 01123567999999999999999999999999999987644
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=318.76 Aligned_cols=277 Identities=17% Similarity=0.138 Sum_probs=218.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|||+|||||| ||||++++++|+++| ++|++ +.|++.+. ..+...+++++.+|+.|.+ ++++|
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~---~~~~~~~~~~~~~D~~d~~-----~~~~d 65 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQG-WRIIG--------TSRNPDQM---EAIRASGAEPLLWPGEEPS-----LDGVT 65 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGT-CEEEE--------EESCGGGH---HHHHHTTEEEEESSSSCCC-----CTTCC
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCC-CEEEE--------EEcChhhh---hhHhhCCCeEEEecccccc-----cCCCC
Confidence 5689999998 999999999999999 59999 45543311 1112257899999999944 78999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHh--CCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE--CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~--~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
+|||+|+..... + ..+.++++++++ .+++||||+||.++||.. ...+.+|+. +..|.++|+.+|
T Consensus 66 ~vi~~a~~~~~~-~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~--~~~~~~E~~--~~~p~~~Y~~sK 131 (286)
T 3ius_A 66 HLLISTAPDSGG-D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDH--DGAWVDETT--PLTPTAARGRWR 131 (286)
T ss_dssp EEEECCCCBTTB-C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCC--TTCEECTTS--CCCCCSHHHHHH
T ss_pred EEEECCCccccc-c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCC--CCCCcCCCC--CCCCCCHHHHHH
Confidence 999999976322 1 135789999998 789999999999999754 334678877 457889999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcc
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
..+|++++.+ .|++++++||+++||++...+ ..+.+|....+.++ .+.++|+|++|+|++++.+++
T Consensus 132 ~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~----- 197 (286)
T 3ius_A 132 VMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF-----SKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMA----- 197 (286)
T ss_dssp HHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS-----TTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhh---cCCCEEEEeccceECCCchHH-----HHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHh-----
Confidence 9999999997 589999999999999986542 34556776666665 688999999999999999998
Q ss_pred cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccce
Q 007866 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTR 324 (586)
Q Consensus 245 ~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (586)
.+. .|++||+++++++|+.|+++.+.+.+|.+.+. .+|.. .....+........+.
T Consensus 198 ~~~-~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~-~~~~~----------------------~~~~~~~~~~~~~~~~ 253 (286)
T 3ius_A 198 RPD-PGAVYNVCDDEPVPPQDVIAYAAELQGLPLPP-AVDFD----------------------KADLTPMARSFYSENK 253 (286)
T ss_dssp SCC-TTCEEEECCSCCBCHHHHHHHHHHHHTCCCCC-EEEGG----------------------GSCCCHHHHHTTSCCC
T ss_pred CCC-CCCEEEEeCCCCccHHHHHHHHHHHcCCCCCc-ccchh----------------------hhccChhHHHhhcCCc
Confidence 333 67899999999999999999999999987543 22211 1112233333344678
Q ss_pred eechhhHhhccCCCCCC-ChHHHHHHHHHH
Q 007866 325 TFDCIAAQKHIGYSPVV-SLEEGVSSTIQS 353 (586)
Q Consensus 325 ~~d~~ka~~~LG~~p~~-~lee~i~~~i~~ 353 (586)
.+|++|++++|||+|++ +++|+++++++.
T Consensus 254 ~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 254 RVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp EECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred eeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 89999999999999999 799999998864
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=324.08 Aligned_cols=300 Identities=16% Similarity=0.118 Sum_probs=236.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
+++|+||||||+||||++++++|+++|+ ++|+++|+.. .... . ....+++++.+|+.|.+++.
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~--------~~~~--~-~~~~~~~~~~~Dl~d~~~~~ 80 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ--------PEAP--A-GFSGAVDARAADLSAPGEAE 80 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSC--------CCCC--T-TCCSEEEEEECCTTSTTHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccC--------Cccc--c-ccCCceeEEEcCCCCHHHHH
Confidence 4578999999999999999999999993 4899965532 1110 0 12346889999999999999
Q ss_pred HHhc-CCCEEEEcccCCC--CCCChhHHHHHHHHHHHHHHHHHHhCC-----CCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 80 KVLE-GASTVFYVDATDL--NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 80 ~~l~-~~D~Vih~aa~~~--~~~~~~~~~~~Nv~gt~~lleaa~~~g-----vkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++++ ++|+|||+|+... ...++...+++|+.|+.+++++|++.+ ++||||+||.++|+... ..+.+|+.|
T Consensus 81 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~~ 158 (342)
T 2hrz_A 81 KLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL--PYPIPDEFH 158 (342)
T ss_dssp HHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSC--CSSBCTTCC
T ss_pred HHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCC--CCCcCCCCC
Confidence 9994 8999999999863 245678899999999999999999886 89999999999997532 236788774
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCccc-CCCC-----CcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFG-PGDT-----QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G-~~~~-----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..|.++|+.+|..+|.+++.++.+.+++.+++|++.+|| |+.. .+++.++....+|++..++++++...+++
T Consensus 159 --~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T 2hrz_A 159 --TTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHA 236 (342)
T ss_dssp --CCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEE
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeE
Confidence 478899999999999999999877789999999999998 6542 24566677777888766777777778899
Q ss_pred chhHHHHHHHHHHHHhhccccc---CCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC--CccCCHHHHHHHHHHHHHHHH
Q 007866 226 YVENVAHAHVCAAEALDSRMVS---VAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHE 300 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~---~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~--~i~vp~~~~~~~~~~~~~~~~ 300 (586)
|++|+|++++.+++. +. ..+++||++ ++++|+.|+++.+.+.+|.+.+ ....|..
T Consensus 237 ~v~Dva~~~~~~~~~-----~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-------------- 296 (342)
T 2hrz_A 237 SPRSAVGFLIHGAMI-----DVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNE-------------- 296 (342)
T ss_dssp CHHHHHHHHHHHHHS-----CHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCH--------------
T ss_pred ehHHHHHHHHHHHhc-----cccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCc--------------
Confidence 999999999999872 22 256799996 4789999999999999986531 1112211
Q ss_pred HhccccCCCCCCcHHHHHHh-ccceeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 301 KLGLRTYNHSLSACYIVQLA-SRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
...... .....+|++|+++ |||+|+++++|+++++++|++
T Consensus 297 --------------~~~~~~~~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 297 --------------MIMRMCEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp --------------HHHHHHTTSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred --------------chhhhhcccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 000111 1223689999998 999999999999999999996
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=352.58 Aligned_cols=318 Identities=18% Similarity=0.179 Sum_probs=246.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHH-HHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~-l~~~l~~ 84 (586)
++|+|||||||||||++++++|+++ | ++|+++++. ... ........+++++.+|+.|.++ +.+++++
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~--------~~~--~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~ 382 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIG--------SDA--ISRFLNHPHFHFVEGDISIHSEWIEYHVKK 382 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESC--------CTT--TGGGTTCTTEEEEECCTTTCHHHHHHHHHH
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcC--------chh--hhhhccCCceEEEECCCCCcHHHHHHhhcC
Confidence 5689999999999999999999998 7 599995543 221 1112234578999999998765 7788899
Q ss_pred CCEEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc-----CCCC
Q 007866 85 ASTVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC-----CWKF 156 (586)
Q Consensus 85 ~D~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~-----~~~p 156 (586)
+|+|||+||.... ..++...+++|+.++.+++++|++++ +||||+||.++||... ..+.+|+.|. ...|
T Consensus 383 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~--~~~~~E~~~~~~~~p~~~p 459 (660)
T 1z7e_A 383 CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCS--DKYFDEDHSNLIVGPVNKP 459 (660)
T ss_dssp CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCC--SSSBCTTTCCEEECCTTCT
T ss_pred CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCC--CcccCCCccccccCcccCC
Confidence 9999999998632 35678899999999999999999999 9999999999997543 2356776642 1256
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
.+.|+.||..+|.+++.++.+.|++++++||+++|||+.. ..++.++..+.+|.++.+++++++.++|+|
T Consensus 460 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~ 539 (660)
T 1z7e_A 460 RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD 539 (660)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEE
Confidence 6789999999999999887667999999999999999753 356777777778888788888999999999
Q ss_pred hhHHHHHHHHHHHHhhccccc--CCCcEEEEeCCC-CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 227 VENVAHAHVCAAEALDSRMVS--VAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~--~~g~~~ni~~~~-~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
++|+|++++.+++ .+. ..|++||+++++ ++|+.|+++.+.+.+|.+.+.+.+|.+..... .+. ....+
T Consensus 540 v~Dva~ai~~~l~-----~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~---~~~-~~~~~ 610 (660)
T 1z7e_A 540 IRDGIEALYRIIE-----NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRV---VES-SSYYG 610 (660)
T ss_dssp HHHHHHHHHHHHH-----CGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEE---ECT-HHHHC
T ss_pred HHHHHHHHHHHHh-----CccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccc---hhc-ccccc
Confidence 9999999999988 232 468899999986 89999999999999987655444443210000 000 00000
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.. .. ......+|++|++++|||+|+++++++++++++||+++..
T Consensus 611 ~~---~~---------~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 611 KG---YQ---------DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp TT---CC---------CCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred cc---cc---------chhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 00 00 0124678999999999999999999999999999988653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=321.45 Aligned_cols=288 Identities=14% Similarity=0.120 Sum_probs=206.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--C
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~ 85 (586)
+|+|||||||||||++++++|+++| ++|++ +.|+... ++ ++.+|+.|.+++.+++++ +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~---------~~--~~~~Dl~d~~~~~~~~~~~~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVG--------CGFRRAR---------PK--FEQVNLLDSNAVHHIIHDFQP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEE--------EC-----------------------------CHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEE--------EccCCCC---------CC--eEEecCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999 59999 4443321 12 778999999999999875 9
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|+|||+|+... ...++...+++|+.++.+++++|.+.|+ |+||+||.++|+. ...+.+|+.| ..|.++|+.
T Consensus 62 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~---~~~~~~E~~~--~~~~~~Y~~ 135 (315)
T 2ydy_A 62 HVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDG---TNPPYREEDI--PAPLNLYGK 135 (315)
T ss_dssp SEEEECC-------------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCS---SSCSBCTTSC--CCCCSHHHH
T ss_pred CEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCC---CCCCCCCCCC--CCCcCHHHH
Confidence 99999999763 2467888999999999999999999887 9999999999975 2346788774 477899999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC---CcHHHHHHHhc-CCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT---QLVPLLVNLAK-PGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~---~~~~~l~~~~~-~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
+|..+|.+++.+ +++++++||+.+||+++. .+++.++..+. .+..+.+. +++.++|+|++|+|++++.++
T Consensus 136 sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~ 209 (315)
T 2ydy_A 136 TKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLA 209 (315)
T ss_dssp HHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHH
Confidence 999999999997 456799999999999876 56666777776 77765554 467899999999999999988
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCC-CccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP-FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~-~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (586)
+... .....+++||+++++++|+.|+++.+.+.+|.+.+ ...+|.. .. .....
T Consensus 210 ~~~~--~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---------------~~-~~~~~-------- 263 (315)
T 2ydy_A 210 EKRM--LDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDS---------------PV-LGAQR-------- 263 (315)
T ss_dssp HHHH--TCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSC---------------CC-SSSCC--------
T ss_pred Hhhc--cccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccc---------------cc-cccCC--------
Confidence 7310 01356789999999999999999999999998754 2233310 00 00000
Q ss_pred HHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.....+|++|++++ ||+|.++++++++++++||+++
T Consensus 264 ---~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 264 ---PRNAQLDCSKLETL-GIGQRTPFRIGIKESLWPFLID 299 (315)
T ss_dssp ---CSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHGGGCC-
T ss_pred ---CcccccchHHHHhc-CCCCCCCHHHHHHHHHHHHccc
Confidence 13467899999997 9999999999999999999775
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=346.95 Aligned_cols=317 Identities=17% Similarity=0.203 Sum_probs=238.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+++|+||||||+||||++++++|+++| ++|+++++... +... ...+ ..+...+++++.+|+.|.+++.++++
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~----~~~~~~~~l-~~~~~~~v~~v~~Dl~d~~~l~~~~~~ 82 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSN----STYDSVARL-EVLTKHHIPFYEVDLCDRKGLEKVFKE 82 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS----CCTHHHHHH-HHHHTSCCCEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCc----chHHHHHHH-hhccCCceEEEEcCCCCHHHHHHHHHh
Confidence 356899999999999999999999999 49999554321 0000 0000 00112467899999999999999998
Q ss_pred -CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC--CCCCCCCCcccCCCCC
Q 007866 84 -GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQ 157 (586)
Q Consensus 84 -~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~--~~~~~~E~~p~~~~p~ 157 (586)
++|+|||+|+... ...++...+++|+.++.+++++|++.+++|+||+||.++||.... ...+.+|+. +..|.
T Consensus 83 ~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~--~~~p~ 160 (699)
T 1z45_A 83 YKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPT 160 (699)
T ss_dssp SCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCC
T ss_pred CCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccC--CCCCC
Confidence 8999999999863 234567889999999999999999999999999999999975321 123567766 34678
Q ss_pred ChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCC------------CcHHHHHHHhc-CCCceEEEc------
Q 007866 158 DLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDT------------QLVPLLVNLAK-PGWTKFIIG------ 216 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~------------~~~~~l~~~~~-~g~~~~i~g------ 216 (586)
++|+.+|..+|++++.++.+ .|++++++||+++||++.. .+++.+.+.+. .+.++.+++
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 240 (699)
T 1z45_A 161 NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSR 240 (699)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------C
T ss_pred ChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCC
Confidence 99999999999999988654 6899999999999998532 23454544443 234455665
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcc-cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHH
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLV 295 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~-~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~ 295 (586)
+|++.++|+|++|+|++++.+++..... .....+++||+++++++|+.|+++.+++.+|.+.+....|..
T Consensus 241 ~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~--------- 311 (699)
T 1z45_A 241 DGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR--------- 311 (699)
T ss_dssp CSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------------
T ss_pred CCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCC---------
Confidence 6888999999999999999998743210 012235799999999999999999999999987553222110
Q ss_pred HHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhcc
Q 007866 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARDS 361 (586)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~~ 361 (586)
.+ + .....+|++|++++|||+|+++++|+|+++++|++++....
T Consensus 312 ------~~----~------------~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~~ 355 (699)
T 1z45_A 312 ------AG----D------------VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGY 355 (699)
T ss_dssp -------------------------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTCS
T ss_pred ------CC----c------------cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcch
Confidence 00 0 12467899999999999999999999999999998876543
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=307.18 Aligned_cols=283 Identities=16% Similarity=0.086 Sum_probs=218.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|||||||||||||++|+++|+++|| +|++ +.|++... .+..| +...+.++++|+|
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~-~V~~--------l~R~~~~~------------~~~~~----~~~~~~l~~~d~v 55 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH-EVTL--------VSRKPGPG------------RITWD----ELAASGLPSCDAA 55 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEE--------EESSCCTT------------EEEHH----HHHHHCCCSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEE--------EECCCCcC------------eeecc----hhhHhhccCCCEE
Confidence 7899999999999999999999995 9999 66654421 12222 2335667899999
Q ss_pred EEcccCC--C-----CCCChhHHHHHHHHHHHHHHHHHHhCCCC--EEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 89 FYVDATD--L-----NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 89 ih~aa~~--~-----~~~~~~~~~~~Nv~gt~~lleaa~~~gvk--r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
||+|+.. . .......+++.|+.+|.+|+++++..+++ +||++||+++||+.. ..+.+|+. +..|.+.
T Consensus 56 ihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~--~~~~~E~~--p~~~~~~ 131 (298)
T 4b4o_A 56 VNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSL--TAEYDEDS--PGGDFDF 131 (298)
T ss_dssp EECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCS--SCCBCTTC--CCSCSSH
T ss_pred EEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCC--CCcccccC--Cccccch
Confidence 9999864 1 12234678899999999999999988754 599999999997543 34667777 4577888
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
|+..+...|... .....+++++++||+.+|||++ +.+..+......|.. ..+|+|+++++|||++|+|+++..+++
T Consensus 132 ~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~ 207 (298)
T 4b4o_A 132 FSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALE 207 (298)
T ss_dssp HHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTS-HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCC-CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHh
Confidence 998888888754 3344789999999999999975 455666666667765 567999999999999999999999998
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQL 319 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (586)
++. .+++||+++++++|++|+++.+++.+|++. .+++|.++++.+..- . ....
T Consensus 208 -----~~~-~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~-~~pvP~~~~~~~~g~--~------------------~~~~ 260 (298)
T 4b4o_A 208 -----ANH-VHGVLNGVAPSSATNAEFAQTFGAALGRRA-FIPLPSAVVQAVFGR--Q------------------RAIM 260 (298)
T ss_dssp -----CTT-CCEEEEESCSCCCBHHHHHHHHHHHHTCCC-CCCBCHHHHHHHHCH--H------------------HHHH
T ss_pred -----CCC-CCCeEEEECCCccCHHHHHHHHHHHhCcCC-cccCCHHHHHHHhcc--h------------------hHHH
Confidence 344 445999999999999999999999999765 468998876653210 0 0111
Q ss_pred hccceeechhhHhhccCCCCCC-ChHHHHHHHHH
Q 007866 320 ASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQ 352 (586)
Q Consensus 320 ~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~ 352 (586)
...+.+.+++|+++ +||++++ +++++++++++
T Consensus 261 ~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 261 LLEGQKVIPRRTLA-TGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHHH
T ss_pred hhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHHH
Confidence 12345678899875 8999998 69999999887
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=312.72 Aligned_cols=300 Identities=19% Similarity=0.172 Sum_probs=211.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCC-CCCC-CCCC--CCCC--CCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP-SESN-SLLP--DSLS--SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r-~~~~-~~~~--~~l~--~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+|+||||||+||||++++++|+++|+ +|+++ .| .++. .... ..+. ..+++++.+|++|.+++.++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~-~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 71 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGY-SVNTT--------IRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAA 71 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEE--------CCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHH
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCC-EEEEE--------EeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHH
Confidence 47899999999999999999999995 99984 43 2211 0000 0011 12467889999999999999
Q ss_pred hcCCCEEEEcccCCC-CCCC-hhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCCCCcccC-----
Q 007866 82 LEGASTVFYVDATDL-NTDD-FYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETLTCC----- 153 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~-~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~----- 153 (586)
++++|+|||+|+... ...+ ...++++|+.|+.+++++|+++ +++||||+||.++++.......+.+|+.+.+
T Consensus 72 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~ 151 (322)
T 2p4h_X 72 IEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLR 151 (322)
T ss_dssp HTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHH
T ss_pred HcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhc
Confidence 999999999998642 2223 3458999999999999999998 8999999999986543322223456654321
Q ss_pred -CCCCC-hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHH---hcCCCceEEEcCCCccccccchh
Q 007866 154 -WKFQD-LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL---AKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 154 -~~p~~-~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~---~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
..|.. +|+.||..+|.+++++++++|++++++||+++|||+....++..... ...|.... .++ ...+|+|++
T Consensus 152 ~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~i~v~ 228 (322)
T 2p4h_X 152 SVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQ-IGV--TRFHMVHVD 228 (322)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGG-CCE--EEEEEEEHH
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCcc-CcC--CCcCEEEHH
Confidence 12333 69999999999999887667999999999999999765322222211 12333222 222 234899999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
|+|++++.+++ .+...| .|| ++++++|+.|+++.+.+..+.. .+|... ..+ .
T Consensus 229 Dva~a~~~~~~-----~~~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~~----~~~~~~-------------~~~----~ 280 (322)
T 2p4h_X 229 DVARAHIYLLE-----NSVPGG-RYN-CSPFIVPIEEMSQLLSAKYPEY----QILTVD-------------ELK----E 280 (322)
T ss_dssp HHHHHHHHHHH-----SCCCCE-EEE-CCCEEEEHHHHHHHHHHHCTTS----CCCCTT-------------TTT----T
T ss_pred HHHHHHHHHhh-----CcCCCC-CEE-EcCCCCCHHHHHHHHHHhCCCC----CCCCCc-------------ccc----C
Confidence 99999999887 333445 588 5668899999999999876421 122110 000 0
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.+. .....+|++|+ ++|||+|+++++++++++++|++++
T Consensus 281 ~~~---------~~~~~~d~~k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 281 IKG---------ARLPDLNTKKL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CCC---------EECCEECCHHH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCC---------CcceecccHHH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 000 02467899999 5699999999999999999999865
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=324.21 Aligned_cols=301 Identities=22% Similarity=0.202 Sum_probs=210.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CC---CCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LP---DSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~---~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++|+||||||+||||++++++|+++|+ +|++++ |+.+... .. ......+++++.+|++|.+++.+++
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 78 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGY-AVNTTV--------RDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPI 78 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEE--------SCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEE--------cCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHH
Confidence 468999999999999999999999994 998843 3322100 00 0001246889999999999999999
Q ss_pred cCCCEEEEcccCCCC-CCCh-hHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccc-cccCCC-CCCCCCCCcccCC---
Q 007866 83 EGASTVFYVDATDLN-TDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADV-VFDGSH-DIHNGDETLTCCW--- 154 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~-~~~~-~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~v-yg~~~~-~~~~~~E~~p~~~--- 154 (586)
+++|+|||+|+.... ..++ ..++++|+.|+.+++++|++++ ++||||+||.++ |+.... ...+.+|+.+.+.
T Consensus 79 ~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 158 (338)
T 2rh8_A 79 AGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFL 158 (338)
T ss_dssp TTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC---
T ss_pred cCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhc
Confidence 999999999997532 2333 3489999999999999999986 999999999984 432111 1125677653221
Q ss_pred ---CC-CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHH---hcCCCceEEEcCC------Ccc
Q 007866 155 ---KF-QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL---AKPGWTKFIIGSG------ENM 221 (586)
Q Consensus 155 ---~p-~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~---~~~g~~~~i~g~g------~~~ 221 (586)
.| ..+|+.||..+|.+++.+++++|++++++||+++|||+.....+..+.. ...|... .++++ ...
T Consensus 159 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 237 (338)
T 2rh8_A 159 TSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEF-LINGMKGMQMLSGS 237 (338)
T ss_dssp ----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSS
T ss_pred cccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcc-ccccccccccccCc
Confidence 12 2269999999999999887657999999999999999865433222221 1233321 12211 122
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~ 301 (586)
++|+|++|+|++++.+++ .+. .++.|++++ +.+|+.|+++.+.+..+.. .+|..
T Consensus 238 ~~~i~v~Dva~a~~~~~~-----~~~-~~~~~~~~~-~~~s~~e~~~~l~~~~~~~----~~~~~--------------- 291 (338)
T 2rh8_A 238 VSIAHVEDVCRAHIFVAE-----KES-ASGRYICCA-ANTSVPELAKFLSKRYPQY----KVPTD--------------- 291 (338)
T ss_dssp EEEEEHHHHHHHHHHHHH-----CTT-CCEEEEECS-EEECHHHHHHHHHHHCTTS----CCCCC---------------
T ss_pred ccEEEHHHHHHHHHHHHc-----CCC-cCCcEEEec-CCCCHHHHHHHHHHhCCCC----CCCCC---------------
Confidence 489999999999999887 233 345788876 4699999999999887531 11211
Q ss_pred hccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.+ ..+. .....+|++|+ ++|||+|+++++|+++++++|+++.
T Consensus 292 ~~----~~~~---------~~~~~~d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 292 FG----DFPP---------KSKLIISSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp CT----TSCS---------SCSCCCCCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred CC----CCCc---------CcceeechHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 00 0000 01257899999 5699999999999999999999865
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=320.10 Aligned_cols=301 Identities=16% Similarity=0.078 Sum_probs=230.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEE-EccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYH-QVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~-~~Dl~d~~~l~~ 80 (586)
+.+|+||||||+||||++++++|+++| ++|+++++.. .+. .+...+ ...+++++ .+|++|.+++.+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSA--------SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCc--------ccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 456899999999999999999999999 5999955432 110 000000 01467888 799999999999
Q ss_pred HhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHh-CCCCEEEEecCccccccCCCC--CCCCCCCccc-----
Q 007866 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTADVVFDGSHD--IHNGDETLTC----- 152 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~-~gvkr~I~~SS~~vyg~~~~~--~~~~~E~~p~----- 152 (586)
+++++|+|||+|+......++...+++|+.|+.+++++|.+ .+++|+||+||.++|+.+... ..+.+|+.+.
T Consensus 80 ~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 80 VIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID 159 (342)
T ss_dssp TTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred HHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence 99999999999998755567889999999999999999985 689999999999999643221 1356676521
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCC-----cHHHHHHHhcCCCceEEEc
Q 007866 153 ---------CWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 153 ---------~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~-----~~~~l~~~~~~g~~~~i~g 216 (586)
+..|.++|+.||..+|.+++.++.++ +++++++||+++|||.... .++.++..+.+|++..+++
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccc
Confidence 23466899999999999999886532 7899999999999997542 6777888888888765566
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHH
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~ 296 (586)
++ +.++|+|++|+|++++.+++ .+...|+.+ +++++++|+.|+++.+.+.+|.+. +..+
T Consensus 240 ~~-~~~~~v~v~Dva~a~~~~~~-----~~~~~g~~~-~~~g~~~s~~e~~~~i~~~~~~~~--~~~~------------ 298 (342)
T 1y1p_A 240 LM-PPQYYVSAVDIGLLHLGCLV-----LPQIERRRV-YGTAGTFDWNTVLATFRKLYPSKT--FPAD------------ 298 (342)
T ss_dssp TC-CSEEEEEHHHHHHHHHHHHH-----CTTCCSCEE-EECCEEECHHHHHHHHHHHCTTSC--CCCC------------
T ss_pred cC-CcCCEeEHHHHHHHHHHHHc-----CcccCCceE-EEeCCCCCHHHHHHHHHHHCCCcc--CCCC------------
Confidence 65 67899999999999999987 344456555 455678999999999999998752 1111
Q ss_pred HHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCC---CCCCChHHHHHHHHHHHH
Q 007866 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGY---SPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~---~p~~~lee~i~~~i~~~~ 355 (586)
.+.. ......+|++|+++.||| .|.++++++|+++++|++
T Consensus 299 ------------~~~~-------~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 299 ------------FPDQ-------GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp ------------CCCC-------CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred ------------CCcc-------ccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 0000 001356799999998887 566799999999999874
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=320.30 Aligned_cols=302 Identities=21% Similarity=0.230 Sum_probs=214.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC--CCC--CCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD--SLS--SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~--~l~--~~~~~~~~~Dl~d~~~l~~~ 81 (586)
++++||||||+||||++++++|+++|+ +|+++ .|+.+.. .... .+. ..+++++.+|++|.+++.++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 74 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRAT--------VRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEA 74 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEE--------ESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEE--------ECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHH
Confidence 468999999999999999999999994 99984 3332210 0000 011 12578899999999999999
Q ss_pred hcCCCEEEEcccCCCC-CCCh-hHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCC----
Q 007866 82 LEGASTVFYVDATDLN-TDDF-YNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCW---- 154 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~-~~~~-~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~---- 154 (586)
++++|+|||+|+.... ..++ ...+++|+.|+.+++++|++++ ++||||+||.++++.......+.+|+.+.+.
T Consensus 75 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~ 154 (337)
T 2c29_D 75 IKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCR 154 (337)
T ss_dssp HTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHH
T ss_pred HcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhc
Confidence 9999999999997632 2333 3589999999999999999987 9999999999855433222234567653221
Q ss_pred ---CCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHh---cCCCceEEEcCCCccccccchh
Q 007866 155 ---KFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLA---KPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 155 ---~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~---~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
.|.++|+.||..+|.+++.++..+|++++++||+++|||+....++..+... ..|... .++++. ...|+|++
T Consensus 155 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~i~v~ 232 (337)
T 2c29_D 155 AKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEA-HYSIIR-QGQFVHLD 232 (337)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGG-GHHHHT-EEEEEEHH
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCc-cccccC-CCCEEEHH
Confidence 2456899999999999998876579999999999999998654332222221 223221 122212 23499999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
|+|++++.+++ .+. .++.|++++ ..+|+.|+++.+.+.++.. .+|... . .
T Consensus 233 Dva~a~~~~~~-----~~~-~~~~~~~~~-~~~s~~e~~~~i~~~~~~~----~~~~~~---------------~----~ 282 (337)
T 2c29_D 233 DLCNAHIYLFE-----NPK-AEGRYICSS-HDCIILDLAKMLREKYPEY----NIPTEF---------------K----G 282 (337)
T ss_dssp HHHHHHHHHHH-----CTT-CCEEEEECC-EEEEHHHHHHHHHHHCTTS----CCCSCC---------------T----T
T ss_pred HHHHHHHHHhc-----Ccc-cCceEEEeC-CCCCHHHHHHHHHHHCCCc----cCCCCC---------------C----c
Confidence 99999999887 233 345776655 5689999999999987431 122100 0 0
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
.+. ......+|++|+ ++|||+|+++++|+++++++|+++..
T Consensus 283 ~~~--------~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 283 VDE--------NLKSVCFSSKKL-TDLGFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp CCT--------TCCCCEECCHHH-HHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred ccC--------CCccccccHHHH-HHcCCCcCCCHHHHHHHHHHHHHHcC
Confidence 000 113467899999 67999999999999999999998764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=318.02 Aligned_cols=291 Identities=16% Similarity=0.146 Sum_probs=214.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|||||||||||++++++|+++|+ +|++ +.|.+.+. ..+.+|+.|. +.++++++|+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~--------l~R~~~~~-----------~~v~~d~~~~--~~~~l~~~D~ 204 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQ--------LVRKEPKP-----------GKRFWDPLNP--ASDLLDGADV 204 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEE--------EESSSCCT-----------TCEECCTTSC--CTTTTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEE--------EECCCCCc-----------cceeecccch--hHHhcCCCCE
Confidence 78999999999999999999999994 9999 44543311 2256787653 3667789999
Q ss_pred EEEcccCCC----CCCChhHHHHHHHHHHHHHHHH-HHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 88 VFYVDATDL----NTDDFYNCYMIIVQGAKNVVTA-CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 88 Vih~aa~~~----~~~~~~~~~~~Nv~gt~~llea-a~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
|||+|+... ...++..++++|+.++.+++++ +++.++++|||+||+++||.. ....+.+|+.+. |.+.|+.
T Consensus 205 Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~-~~~~~~~E~~~~---~~~~y~~ 280 (516)
T 3oh8_A 205 LVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHD-RGDEILTEESES---GDDFLAE 280 (516)
T ss_dssp EEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSE-EEEEEECTTSCC---CSSHHHH
T ss_pred EEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCC-CCCCccCCCCCC---CcChHHH
Confidence 999999862 3456788999999999999999 677789999999999999732 223367787753 7889999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
+|..+|.++..... .|++++++||+++|||+. +.++.+...+..|.. ..+++|++.++|+|++|+|++++.+++
T Consensus 281 ~~~~~E~~~~~~~~-~gi~~~ilRp~~v~Gp~~-~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~--- 354 (516)
T 3oh8_A 281 VCRDWEHATAPASD-AGKRVAFIRTGVALSGRG-GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIV--- 354 (516)
T ss_dssp HHHHHHHTTHHHHH-TTCEEEEEEECEEEBTTB-SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHh-CCCCEEEEEeeEEECCCC-ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHh---
Confidence 99999988765543 699999999999999985 567777777777765 477899999999999999999999998
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhcc
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASR 322 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (586)
.+. .+++||+++++++|+.|+++.+++.+|.+. .+.+|.+..... .+..+ .......
T Consensus 355 --~~~-~~g~~ni~~~~~~s~~el~~~i~~~~g~~~-~~~~p~~~~~~~----------~g~~~---------~~~~~~~ 411 (516)
T 3oh8_A 355 --DAQ-ISGPINAVAPNPVSNADMTKILATSMHRPA-FIQIPSLGPKIL----------LGSQG---------AEELALA 411 (516)
T ss_dssp --CTT-CCEEEEESCSCCEEHHHHHHHTTC--------------------------------CC---------GGGGGGC
T ss_pred --Ccc-cCCcEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCHHHHHHH----------hCCch---------hHHHhhc
Confidence 333 456999999999999999999999999765 455665543211 11000 0112234
Q ss_pred ceeechhhHhhccCCCCCCC-hHHHHHHHHHHH
Q 007866 323 TRTFDCIAAQKHIGYSPVVS-LEEGVSSTIQSF 354 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~-lee~i~~~i~~~ 354 (586)
+...+++|++ +|||+|+++ +++++++++++.
T Consensus 412 ~~~~~~~kl~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 412 SQRTAPAALE-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp EEEECCHHHH-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred CCeechHHHH-HCCCCCCCCCHHHHHHHHhCcc
Confidence 5678899998 599999997 999999998754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=286.96 Aligned_cols=279 Identities=15% Similarity=0.145 Sum_probs=211.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|+|||||||||||++++++|+++ | ++|++++ |++.+. ..+...+++++.+|+.|++++.++++++|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~--------r~~~~~---~~l~~~~~~~~~~D~~d~~~l~~~~~~~d 68 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIV--------RNVEKA---STLADQGVEVRHGDYNQPESLQKAFAGVS 68 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEE--------SCTTTT---HHHHHTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEE--------cCHHHH---hHHhhcCCeEEEeccCCHHHHHHHHhcCC
Confidence 57999999999999999999998 8 5999944 433211 11112468899999999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~ 166 (586)
+|||+|+... . .++|+.++.+++++|+++|++||||+||.++|. ...+|+.+|..
T Consensus 69 ~vi~~a~~~~--~-----~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------------~~~~y~~~K~~ 123 (287)
T 2jl1_A 69 KLLFISGPHY--D-----NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEE------------------SIIPLAHVHLA 123 (287)
T ss_dssp EEEECCCCCS--C-----HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG------------------CCSTHHHHHHH
T ss_pred EEEEcCCCCc--C-----chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------------CCCchHHHHHH
Confidence 9999998631 1 167999999999999999999999999998861 01379999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccc
Q 007866 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (586)
Q Consensus 167 ~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~ 246 (586)
+|++++. .|++++++||+.++|+.....+ ......+.. ..+.+++.++|+|++|+|++++.+++ .+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVNEGL---RASTESGAI--VTNAGSGIVNSVTRNELALAAATVLT-----EE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSSGGG---HHHHHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHT-----SS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccchhhH---HHHhhCCce--eccCCCCccCccCHHHHHHHHHHHhc-----CC
Confidence 9999976 5899999999998886522222 223333432 35667888999999999999999987 34
Q ss_pred cCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcH----HHHHHh-c
Q 007866 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSAC----YIVQLA-S 321 (586)
Q Consensus 247 ~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~ 321 (586)
...|++||+++++++|+.|+++.+.+.+|.+.+...+|.+....... ..+ .|.... .....+ .
T Consensus 190 ~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 GHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLV-------NAG-----VPEPFTEITAAIYDAISK 257 (287)
T ss_dssp SCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHH-------HTT-----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHH-------hCC-----CCHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999987777888765432211 001 010000 000111 1
Q ss_pred cceeechhhHhhccCCCCCCChHHHHHHHHH
Q 007866 322 RTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352 (586)
Q Consensus 322 ~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~ 352 (586)
....+|++|+++.|| |.++++|+++++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 345678999999999 66699999999875
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=305.92 Aligned_cols=317 Identities=15% Similarity=0.077 Sum_probs=228.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--------CCCC-------CCCCCCeEEEEc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--------LLPD-------SLSSGRAEYHQV 70 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--------~~~~-------~l~~~~~~~~~~ 70 (586)
+.+|+|||||||||||++++++|++.| ++|+++ .|.+... .+.. .....++.++.+
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 137 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCF--------IRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG 137 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEE--------EECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEE--------ECCCChHHHHHHHHHHHHHhccccccccccCceEEEeC
Confidence 456899999999999999999999999 599994 4443200 0000 001257899999
Q ss_pred cCCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc---CCCCCCCCC
Q 007866 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD---GSHDIHNGD 147 (586)
Q Consensus 71 Dl~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~---~~~~~~~~~ 147 (586)
|+.|.+.+. .+.++|+|||+||......++...+++|+.|+.+++++|.+ ++++|||+||.++ |. ......+.+
T Consensus 138 Dl~d~~~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 138 DFECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CC---CCCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred CCCCcccCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCcccc
Confidence 999988877 77889999999998866677889999999999999999999 8899999999999 43 223344677
Q ss_pred CCccc-CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEEcC
Q 007866 148 ETLTC-CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 148 E~~p~-~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~~~~i~g~ 217 (586)
|+++. +..|.+.|+.+|+.+|.+++.+++ .|++++++||+++||+..... +..++.....+..++. ++
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SM 292 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HH
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-cc
Confidence 77653 245889999999999999999875 699999999999999976543 5667777766665433 45
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~ 297 (586)
++..++|+|++|+|++++.+++ .+. .|++||+++++++++.|+++.+.+ +| .+.+..+.|.......
T Consensus 293 ~~~~~~~v~v~DvA~ai~~~~~-----~~~-~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~---- 359 (427)
T 4f6c_A 293 AEMPVDFSFVDTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQ---- 359 (427)
T ss_dssp HTCEECCEEHHHHHHHHHHHTT-----SCC-CCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHT----
T ss_pred ccceEEEeeHHHHHHHHHHHHc-----CCC-CCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhc----
Confidence 6889999999999999999887 344 889999999999999999999998 66 3333333333221110
Q ss_pred HHHHhccccCCCCCCcHH-HHHHhccceeechhhHh---hccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 298 IHEKLGLRTYNHSLSACY-IVQLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~ka~---~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
+ .+++... ..........+|+++.. +.+||++...-++.++++++++++...
T Consensus 360 -----~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~ 415 (427)
T 4f6c_A 360 -----D-----MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 415 (427)
T ss_dssp -----T-----CHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -----C-----chhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 0000000 00112235678887776 556999875567799999999988743
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=279.78 Aligned_cols=266 Identities=17% Similarity=0.095 Sum_probs=210.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~D 86 (586)
|+|+||||+|+||++++++|++ | ++|++++ |.+.. . .+ +.+|+.|++++.+++++ +|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~--------r~~~~----~----~~---~~~Dl~~~~~~~~~~~~~~~d 59 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R-HEVIKVY--------NSSEI----Q----GG---YKLDLTDFPRLEDFIIKKRPD 59 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T-SCEEEEE--------SSSCC----T----TC---EECCTTSHHHHHHHHHHHCCS
T ss_pred CEEEEECCCChhHHHHHHHHhc-C-CeEEEec--------CCCcC----C----CC---ceeccCCHHHHHHHHHhcCCC
Confidence 5799999999999999999995 8 5999944 43321 0 12 78999999999999986 99
Q ss_pred EEEEcccCCCC---CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDLN---TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~~---~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+||.... ..+++..+++|+.++.+++++|++.++ |+||+||.++|+... .+.+|+.+ ..|.++|+.+
T Consensus 60 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~---~~~~e~~~--~~~~~~Y~~s 133 (273)
T 2ggs_A 60 VIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEK---GNYKEEDI--PNPINYYGLS 133 (273)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSS---CSBCTTSC--CCCSSHHHHH
T ss_pred EEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCC---CCcCCCCC--CCCCCHHHHH
Confidence 99999998632 357888999999999999999999987 999999999996432 26677763 4778899999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|.+++. ++++++||+.+|| .......+...+..++.+.+.++ .++++|++|+|++++.+++.
T Consensus 134 K~~~e~~~~~------~~~~~iR~~~v~G--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~--- 199 (273)
T 2ggs_A 134 KLLGETFALQ------DDSLIIRTSGIFR--NKGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLEL--- 199 (273)
T ss_dssp HHHHHHHHCC------TTCEEEEECCCBS--SSSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhC------CCeEEEecccccc--ccHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhc---
Confidence 9999999876 5679999999998 34556666677777777666654 78999999999999999882
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
+ . +++||+++ +++|+.|+++.+.+.+|.+.+... |.+. .+ ..+ . ...+
T Consensus 200 --~-~-~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~-~~~~--------------~~----~~~-~-------~~~~ 247 (273)
T 2ggs_A 200 --R-K-TGIIHVAG-ERISRFELALKIKEKFNLPGEVKE-VDEV--------------RG----WIA-K-------RPYD 247 (273)
T ss_dssp --T-C-CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEE-ESSC--------------TT----CCS-C-------CCSB
T ss_pred --C-c-CCeEEECC-CcccHHHHHHHHHHHhCCChhhcc-cccc--------------cc----ccc-C-------CCcc
Confidence 2 2 45999999 999999999999999998765321 1110 00 000 0 0135
Q ss_pred eeechhhHhhccCCCC-CCChHHHH
Q 007866 324 RTFDCIAAQKHIGYSP-VVSLEEGV 347 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p-~~~lee~i 347 (586)
..+|++|++++|||+| .+++++++
T Consensus 248 ~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 248 SSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp CCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred cccCHHHHHHHhCCCCCCccccccc
Confidence 6789999999999999 67998875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=312.08 Aligned_cols=317 Identities=15% Similarity=0.083 Sum_probs=230.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----C----CC-------CCCCCCCeEEEEcc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----L----LP-------DSLSSGRAEYHQVD 71 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~----~~-------~~l~~~~~~~~~~D 71 (586)
.+|+|||||||||||++++++|++.| ++|+++ .|.+... . +. ......+++++.+|
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l--------~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D 219 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCF--------IRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD 219 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEE--------EESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEB
T ss_pred CCCeEEEECCccchHHHHHHHHHhcC-CEEEEE--------ECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecC
Confidence 46899999999999999999999899 599994 4433210 0 00 00113579999999
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc--cccCCCCCCCCCCC
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV--VFDGSHDIHNGDET 149 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v--yg~~~~~~~~~~E~ 149 (586)
+.|++.+. +..++|+|||+|+......++...+++|+.++.+++++|++ ++++|||+||.++ |+.......+.+|+
T Consensus 220 l~d~~~l~-~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~vG~~~~~~~~~~~~~E~ 297 (508)
T 4f6l_B 220 FECMDDVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEA 297 (508)
T ss_dssp TTBCSSCC-CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCTTSEECTTCSCCEECTT
T ss_pred CcccccCC-CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhhccCCccCCcCcccccc
Confidence 99977777 77889999999998866777889999999999999999998 7789999999999 32222334466777
Q ss_pred ccc-CCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEEcCCC
Q 007866 150 LTC-CWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 150 ~p~-~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~~~~i~g~g~ 219 (586)
++. +..|.+.|+.+|+.+|++++.+.+ .|++++++||+++||++.... +..++.....+..++. ++++
T Consensus 298 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~ 375 (508)
T 4f6l_B 298 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAE 375 (508)
T ss_dssp CSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGG
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccC
Confidence 653 234789999999999999999875 699999999999999976543 6667777777765333 4578
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~ 299 (586)
..++|+|++|+|++++.+++ .+. .+++||+++++++++.|+++.+.+.. .+.+..|.|.....
T Consensus 376 ~~~~~v~v~DvA~ai~~~~~-----~~~-~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~-------- 438 (508)
T 4f6l_B 376 MPVDFSFVDTTARQIVALAQ-----VNT-PQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQ-------- 438 (508)
T ss_dssp SEEECEEHHHHHHHHHHHTT-----BCC-SCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHH--------
T ss_pred ceEEEEcHHHHHHHHHHHHh-----CCC-CCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHH--------
Confidence 89999999999999999887 344 78899999999999999999999765 33334444432211
Q ss_pred HHhccccCCCCCCcHHHH-HHhccceeechhhHh---hccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 300 EKLGLRTYNHSLSACYIV-QLASRTRTFDCIAAQ---KHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ka~---~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.. + .+++..... ........+|+++.. +++||.+...-++.++++++++++...
T Consensus 439 ---~~-~--~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 439 ---KQ-D--MYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp ---TT-C--CHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ---hc-C--CccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 10 0 000000000 012235677877766 456999886678899999999988743
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=284.13 Aligned_cols=279 Identities=14% Similarity=0.105 Sum_probs=203.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|||||||||++++++|+++ | ++|++++ |.+.+. ..+...+++++.+|+.|++++.++++++|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~--------r~~~~~---~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 68 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIV--------RNPAKA---QALAAQGITVRQADYGDEAALTSALQGVEK 68 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEE--------SCTTTC---HHHHHTTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEE--------cChHhh---hhhhcCCCeEEEcCCCCHHHHHHHHhCCCE
Confidence 5899999999999999999998 8 5999944 433211 111124688999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+... +.|+.++.+++++|+++|++|+||+||.++|. ...+|+.+|..+
T Consensus 69 vi~~a~~~~---------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~------------------~~~~y~~sK~~~ 121 (286)
T 2zcu_A 69 LLLISSSEV---------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT------------------SPLGLADEHIET 121 (286)
T ss_dssp EEECC-----------------CHHHHHHHHHHHHTCCEEEEEEETTTTT------------------CCSTTHHHHHHH
T ss_pred EEEeCCCCc---------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC------------------CcchhHHHHHHH
Confidence 999998631 25889999999999999999999999998861 113799999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|+++++ .|++++++||+.++|+.. .. +.+....+. + ..+++++.++++|++|+|++++.+++ .+.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-~~---~~~~~~~~~-~-~~~~~~~~~~~i~~~Dva~~~~~~~~-----~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-AS---APAALEHGV-F-IGAAGDGKIASATRADYAAAAARVIS-----EAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-TT---HHHHHHHTE-E-EESCTTCCBCCBCHHHHHHHHHHHHH-----SSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-HH---hHHhhcCCc-e-eccCCCCccccccHHHHHHHHHHHhc-----CCC
Confidence 999986 589999999987766432 12 222233333 2 36677889999999999999999988 344
Q ss_pred CCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc----HHHHHHhc-c
Q 007866 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA----CYIVQLAS-R 322 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~ 322 (586)
..|++||+++++++|+.|+++.+.+.+|.+.+...+|.+....... ..+ .+... ........ .
T Consensus 187 ~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 HEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALK-------SVG-----LPDGLADMLADSDVGASKG 254 (286)
T ss_dssp CTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHT-------TSS-----CCHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHH-------HcC-----CCHHHHHHHHHHHHHHhCC
Confidence 5788999999999999999999999999987777888765332110 000 01000 00111111 2
Q ss_pred ceeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 323 TRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 323 ~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
...+|++|+++.|||.| ++++|+++++++||.
T Consensus 255 ~~~~~~~~~~~~lg~~~-~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGHPT-TTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTSCC-CCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCcCC-CCHHHHHHHHHhhcC
Confidence 35668999999999755 599999999998873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=267.75 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=175.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
||+|+|||||||||++++++|+++| ++|++ +.|.+.+. .. + ..+++++.+|+.|.+++.++++++|+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~--~~-~-~~~~~~~~~Dl~d~~~~~~~~~~~d~ 70 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG-FEVTA--------VVRHPEKI--KI-E-NEHLKVKKADVSSLDEVCEVCKGADA 70 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT-CEEEE--------ECSCGGGC--CC-C-CTTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CEEEE--------EEcCcccc--hh-c-cCceEEEEecCCCHHHHHHHhcCCCE
Confidence 6899999999999999999999999 59999 45544321 11 1 25799999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+... .++ ..+++|+.++.+++++|++++++||||+||.++|+..+. ...|+. +..|.++|+.+|..+
T Consensus 71 vi~~a~~~~--~~~-~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~---~~~~~~--~~~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 71 VISAFNPGW--NNP-DIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPG---LRLMDS--GEVPENILPGVKALG 142 (227)
T ss_dssp EEECCCC---------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETT---EEGGGT--TCSCGGGHHHHHHHH
T ss_pred EEEeCcCCC--CCh-hHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCC---CccccC--CcchHHHHHHHHHHH
Confidence 999998752 222 378899999999999999999999999999998864322 122333 447889999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|.+++.++++.|++++++||+.+|||+..... ...+....+. .++. ++|+|++|+|++++.+++ .+.
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~------~~~~~~~~~~-~~~~-~~~i~~~Dva~ai~~~l~-----~~~ 209 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR------YRLGKDDMIV-DIVG-NSHISVEDYAAAMIDELE-----HPK 209 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCC------CEEESSBCCC-CTTS-CCEEEHHHHHHHHHHHHH-----SCC
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCccccc------eeecCCCccc-CCCC-CcEEeHHHHHHHHHHHHh-----Ccc
Confidence 99999998778999999999999999764211 1112221222 2222 899999999999999999 578
Q ss_pred CCCcEEEEeCCCCcCHHH
Q 007866 248 VAGMAFFITNLEPIKFWD 265 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~e 265 (586)
..|++|+++++++.++.+
T Consensus 210 ~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 210 HHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp CCSEEEEEECCSCCC---
T ss_pred ccCcEEEEEeehhcccCC
Confidence 899999999999988753
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=297.57 Aligned_cols=275 Identities=19% Similarity=0.146 Sum_probs=206.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhc---CCcEEEEecCCcccccCCCCCCC----CCCCCC--------------CCCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLEL---GKCIVRVTDSTQSLQLDPSESNS----LLPDSL--------------SSGR 64 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~---g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l--------------~~~~ 64 (586)
..+|+|||||||||||++++++|+++ | ++|+++++ .+... .+...+ ...+
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 141 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVR--------AESDEDARRRLEKTFDSGDPELLRHFKELAADR 141 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEEC--------SSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEEC--------CCCcHHHHHHHHHHHHhcchhhhhhhhhhccCc
Confidence 45799999999999999999999999 8 59999544 33210 000011 1257
Q ss_pred eEEEEccCC------CHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 65 AEYHQVDVR------DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 65 ~~~~~~Dl~------d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
++++.+|+. |.+.+.++++++|+|||+||.... .++...+++|+.|+.+++++|++.++++|||+||.++|+.
T Consensus 142 v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 142 LEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAA 220 (478)
T ss_dssp EEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTT
T ss_pred eEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCc
Confidence 999999998 778899999999999999999755 6777899999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCcccC---------CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCC-C------CcHHHH
Q 007866 139 GSHDIHNGDETLTCC---------WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGD-T------QLVPLL 202 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~---------~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~-~------~~~~~l 202 (586)
.. ..+.+|+.+.. ....+.|+.||..+|.+++.++++.|++++++||+++||++. . ..+..+
T Consensus 221 ~~--~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l 298 (478)
T 4dqv_A 221 IE--PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRM 298 (478)
T ss_dssp SC--TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHH
T ss_pred cC--CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHH
Confidence 32 23566665321 111245999999999999999876799999999999999854 1 234444
Q ss_pred HHHhc-CCCce-EEE---cC---CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC--cCHHHHHHHHHH
Q 007866 203 VNLAK-PGWTK-FII---GS---GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP--IKFWDFLSIILE 272 (586)
Q Consensus 203 ~~~~~-~g~~~-~i~---g~---g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~--~t~~ei~~~i~~ 272 (586)
+.... .|... .++ ++ ++..++|+|++|+|++++.++..... .+...+++||++++++ +|+.|+++.+.+
T Consensus 299 ~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~-~~~~~~~~ynv~~~~~~~~s~~el~~~l~~ 377 (478)
T 4dqv_A 299 VLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAG-SSLAGFATYHVMNPHDDGIGLDEYVDWLIE 377 (478)
T ss_dssp HHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC--CCCCSEEEEEESCCCCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhccc-CCCCCCceEEecCCCCCCcCHHHHHHHHHH
Confidence 44333 23321 111 12 26788999999999999999873211 1456678999999987 999999999999
Q ss_pred HcCCCCCCc-cCCHHHHHHHHHH
Q 007866 273 GLGYQRPFI-KLPTGVVWYIILL 294 (586)
Q Consensus 273 ~~g~~~~~i-~vp~~~~~~~~~~ 294 (586)
. |.+.+.+ .+|.|+.+....+
T Consensus 378 ~-g~~~~~i~~~~~w~~~l~~~~ 399 (478)
T 4dqv_A 378 A-GYPIRRIDDFAEWLQRFEASL 399 (478)
T ss_dssp T-TCSCEEESSHHHHHHHHHHHH
T ss_pred c-CCCcccCCCHHHHHHHHHHHh
Confidence 5 7776555 6777776655443
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=269.05 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=193.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
||+||||||+|+||++++++|+++| ++|++ +.|.+.+. . ..+++++.+|+.|.+++.++++++|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------~~r~~~~~-~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~ 66 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRL--------SDIVDLGA-A-----EAHEEIVACDLADAQAVHDLVKDCDG 66 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEE--------CCSSCCCC-C-----CTTEEECCCCTTCHHHHHHHHTTCSE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEE--------EeCCCccc-c-----CCCccEEEccCCCHHHHHHHHcCCCE
Confidence 5799999999999999999999999 59999 55544321 1 14678999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+.. ...++...+++|+.++.++++++++++++|+||+||.++|+..+. ..+.+|+.| ..|.++|+.+|..+
T Consensus 67 vi~~a~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~-~~~~~E~~~--~~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 67 IIHLGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPR-TTRIDTEVP--RRPDSLYGLSKCFG 142 (267)
T ss_dssp EEECCSCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBT-TSCBCTTSC--CCCCSHHHHHHHHH
T ss_pred EEECCcCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCC-CCCCCCCCC--CCCCChHHHHHHHH
Confidence 99999986 455678899999999999999999999999999999999975332 346788774 57889999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|.+++.+..++|++++++||+.+|+.. .+++..++|+|++|+|++++.+++ .+.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~---------------------~~~~~~~~~~~~~dva~~~~~~~~-----~~~ 196 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKP---------------------KDARMMATWLSVDDFMRLMKRAFV-----APK 196 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSC---------------------CSHHHHHHBCCHHHHHHHHHHHHH-----SSC
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCC---------------------CCCCeeeccccHHHHHHHHHHHHh-----CCC
Confidence 999998877789999999999999421 123456789999999999999988 344
Q ss_pred CCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeec
Q 007866 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFD 327 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 327 (586)
..+++|++.++.. ....|
T Consensus 197 ~~~~~~~~~~~~~--------------------------------------------------------------~~~~d 214 (267)
T 3ay3_A 197 LGCTVVYGASANT--------------------------------------------------------------ESWWD 214 (267)
T ss_dssp CCEEEEEECCSCS--------------------------------------------------------------SCCBC
T ss_pred CCceeEecCCCcc--------------------------------------------------------------ccccC
Confidence 4456787765321 11347
Q ss_pred hhhHhhccCCCCCCChHHHHHHHHH
Q 007866 328 CIAAQKHIGYSPVVSLEEGVSSTIQ 352 (586)
Q Consensus 328 ~~ka~~~LG~~p~~~lee~i~~~i~ 352 (586)
..++ +.+||+|+++++++++++.+
T Consensus 215 ~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 215 NDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp CGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred HHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 7788 78999999999999987654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-32 Score=279.49 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=194.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+||||||||+||++++++|+++ |+++|+++++. +.+. .+...+...+++++.+|++|.+++.++++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~--------~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRD--------ELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE 90 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESC--------HHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECC--------hhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh
Confidence 34689999999999999999999999 94489995443 2210 00011123578999999999999999999
Q ss_pred CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 84 GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 84 ~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
++|+|||+||... ...++...+++|+.|+.|++++|.++|++|+|++||..++ .|.++|
T Consensus 91 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~------------------~p~~~Y 152 (344)
T 2gn4_A 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA------------------NPINLY 152 (344)
T ss_dssp TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS------------------SCCSHH
T ss_pred cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC------------------CCccHH
Confidence 9999999999863 2356788999999999999999999999999999997664 356899
Q ss_pred HHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC-ceEEEcCCCccccccchhHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW-TKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~-~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+.||..+|.+++.++.. .|++++++||+++||++. ..++.+.+.+.+|+ ++.+ .+++..++|+|++|+|++++.
T Consensus 153 ~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-~~i~~~~~~~~~g~~~~~i-~~~~~~r~~i~v~D~a~~v~~ 230 (344)
T 2gn4_A 153 GATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-SVVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVSFVLK 230 (344)
T ss_dssp HHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-SHHHHHHHHHHHTCCCEEE-SCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-CHHHHHHHHHHcCCCceEE-eCCCeEEeeEEHHHHHHHHHH
Confidence 99999999999998753 689999999999999875 56788888888887 6555 478888999999999999999
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcC
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g 275 (586)
+++. ...|++|+++++ ++++.|+++.+.+..+
T Consensus 231 ~l~~------~~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 231 SLKR------MHGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHH------CCSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred HHhh------ccCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 9983 246789998775 6999999999986553
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-32 Score=280.74 Aligned_cols=295 Identities=12% Similarity=0.052 Sum_probs=210.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CC--CCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LL--PDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~--~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
|.+|+|||||||||||++++++|+++| ++|+++ .|.+... .. ...+...+++++.+|+.|.+++.++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l--------~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~ 78 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYIL--------ARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKI 78 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEE--------ECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEE--------ECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHH
Confidence 446799999999999999999999999 599994 4443110 00 0011235789999999999999999
Q ss_pred hc--CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 82 LE--GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 82 l~--~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
++ ++|+|||+|+.. |+.++.+++++|+++| ++|||+ | +||. ..+|+. +..|.+
T Consensus 79 ~~~~~~d~Vi~~a~~~------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~------~~~e~~--~~~p~~ 134 (346)
T 3i6i_A 79 LKEHEIDIVVSTVGGE------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH------DVNRAD--PVEPGL 134 (346)
T ss_dssp HHHTTCCEEEECCCGG------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS------CTTTCC--CCTTHH
T ss_pred HhhCCCCEEEECCchh------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC------CCCccC--cCCCcc
Confidence 99 999999999872 8889999999999999 999996 3 4542 234544 346788
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
+|+.+|..+|+++++ .|++++++||+.++|.......... .....+..+.++++|+..++|+|++|+|++++.++
T Consensus 135 ~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l 209 (346)
T 3i6i_A 135 NMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIHPS-EVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTV 209 (346)
T ss_dssp HHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHH----cCCCEEEEEecccccccCccccccc-cccCCCceEEEccCCCceEEecCHHHHHHHHHHHH
Confidence 999999999999988 5899999999999997644333221 12334555789999999999999999999999998
Q ss_pred HHhhcccccCCCcEEEEeC-CCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHH--------HHHHHHHHhccccCCC
Q 007866 239 EALDSRMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIIL--------LVKWIHEKLGLRTYNH 309 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~-~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~--------~~~~~~~~~~~~~~~~ 309 (586)
+ .+...+++|++++ ++.+|+.|+++.+.+.+|.+.+...+|...+..... +...+......
T Consensus 210 ~-----~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----- 279 (346)
T 3i6i_A 210 D-----DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIK----- 279 (346)
T ss_dssp T-----CGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTT-----
T ss_pred h-----CccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhcc-----
Confidence 7 4556688999986 489999999999999999998877788764321110 11111111100
Q ss_pred CCCcHHHHHHhccceeech-----hhHhhcc-CCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 310 SLSACYIVQLASRTRTFDC-----IAAQKHI-GYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~-----~ka~~~L-G~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+....++. .++.+.+ +++|+ +++|.++++++|++++...
T Consensus 280 -----------g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~ 324 (346)
T 3i6i_A 280 -----------GCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPT 324 (346)
T ss_dssp -----------CTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC-------
T ss_pred -----------CCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccc
Confidence 00011222 2234433 77776 9999999999999887543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=259.33 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=176.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+||+|+||||+|+||++++++|+++| ++|+++|+ .+.+. ...+++++.+|+.|.+++.++++++|
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r--------~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~~~D 66 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADL--------SPLDP------AGPNEECVQCDLADANAVNAMVAGCD 66 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEES--------SCCCC------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEec--------CCccc------cCCCCEEEEcCCCCHHHHHHHHcCCC
Confidence 46799999999999999999999999 59999544 33321 13578999999999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHH
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQ 166 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~ 166 (586)
+|||+||.. ...+++..+++|+.|+.+++++|++++++|+||+||.++||.... ..+.+|+. +..|.+.|+.||..
T Consensus 67 ~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~-~~~~~e~~--~~~~~~~Y~~sK~~ 142 (267)
T 3rft_A 67 GIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ-TERLGPDV--PARPDGLYGVSKCF 142 (267)
T ss_dssp EEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBT-TSCBCTTS--CCCCCSHHHHHHHH
T ss_pred EEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCC-CCCCCCCC--CCCCCChHHHHHHH
Confidence 999999985 566788999999999999999999999999999999999974332 34677776 45788999999999
Q ss_pred HHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccc
Q 007866 167 AEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (586)
Q Consensus 167 ~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~ 246 (586)
+|.+++.+++++|++++++||+.+||+. ++++..++|+|++|+++++..+++ .+
T Consensus 143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~~---------------------~~~~~~~~~~~~~d~a~~~~~~~~-----~~ 196 (267)
T 3rft_A 143 GENLARMYFDKFGQETALVRIGSCTPEP---------------------NNYRMLSTWFSHDDFVSLIEAVFR-----AP 196 (267)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECBCSSSC---------------------CSTTHHHHBCCHHHHHHHHHHHHH-----CS
T ss_pred HHHHHHHHHHHhCCeEEEEEeecccCCC---------------------CCCCceeeEEcHHHHHHHHHHHHh-----CC
Confidence 9999999887789999999999999862 345667899999999999999988 45
Q ss_pred cCCCcEEEEeCCC
Q 007866 247 SVAGMAFFITNLE 259 (586)
Q Consensus 247 ~~~g~~~ni~~~~ 259 (586)
...+.++++.+++
T Consensus 197 ~~~~~~~~~~s~~ 209 (267)
T 3rft_A 197 VLGCPVVWGASAN 209 (267)
T ss_dssp CCCSCEEEECCCC
T ss_pred CCCceEEEEeCCC
Confidence 5556688888755
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=283.89 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=186.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|||||||||||++++++|+++|+.+|++ ++|. .|.+++.++++++|+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~--------~d~~----------------------~d~~~l~~~~~~~d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE--------VHRQ----------------------TKEEELESALLKADFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEE--------CCTT----------------------CCHHHHHHHHHHCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEE--------ECCC----------------------CCHHHHHHHhccCCEE
Confidence 689999999999999999999999437777 3321 6789999999999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
||+|+.... .++...+++|+.++.+++++|+++|++ |+||+||.++|+ .++|+.+|..+
T Consensus 51 ih~a~~~~~-~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-------------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP-EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-------------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT-TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-------------------CSHHHHHHHHH
T ss_pred EECCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-------------------CCCchHHHHHH
Confidence 999998643 456778899999999999999999988 999999999983 46899999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|++++.++++.|++++++||+++||++.. ..++.++..+..++++.+ ++++..++|+|++|+|++++.+++
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~---- 185 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIE---- 185 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHh----
Confidence 99999998877999999999999999764 477888888888887554 578999999999999999999998
Q ss_pred ccccCC-CcEEEEeCCCCcCHHHHHHHHHHHcCCC
Q 007866 244 RMVSVA-GMAFFITNLEPIKFWDFLSIILEGLGYQ 277 (586)
Q Consensus 244 ~~~~~~-g~~~ni~~~~~~t~~ei~~~i~~~~g~~ 277 (586)
.+... +++||+++++++|+.|+++.+.+.+|.+
T Consensus 186 -~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~ 219 (369)
T 3st7_A 186 -GTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQSR 219 (369)
T ss_dssp -TCCCEETTEECCSCCEEEEHHHHHHHHHHHHHHH
T ss_pred -CCcccCCceEEeCCCCceeHHHHHHHHHHHhCCC
Confidence 33333 7899999999999999999999998865
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=258.41 Aligned_cols=274 Identities=11% Similarity=0.095 Sum_probs=196.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|+||||||||+||++++++|.++ | ++|++ +.|++++. ..+...+++++.+|+.|++++.++++++|+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~--------~~R~~~~~---~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~ 68 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHI--------GVRNVEKV---PDDWRGKVSVRQLDYFNQESMVEAFKGMDT 68 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEE--------EESSGGGS---CGGGBTTBEEEECCTTCHHHHHHHTTTCSE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEE--------EECCHHHH---HHhhhCCCEEEEcCCCCHHHHHHHHhCCCE
Confidence 57999999999999999999998 7 59999 45544321 112345799999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+.... ...|+.++++++++|+++|++||||+||.+. +++.|. .+...+..+
T Consensus 69 vi~~a~~~~~-------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~-----------~~~~~~------~~~~~~~~~ 124 (289)
T 3e48_A 69 VVFIPSIIHP-------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD-----------QHNNPF------HMSPYFGYA 124 (289)
T ss_dssp EEECCCCCCS-------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC-----------STTCCS------TTHHHHHHH
T ss_pred EEEeCCCCcc-------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC-----------CCCCCC------ccchhHHHH
Confidence 9999987521 1358999999999999999999999999532 111111 122233456
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|..+.. .|++++++||+.+||+. ...+......+. ...+.|+..++|+|++|+|++++.+++ .+.
T Consensus 125 e~~~~~----~g~~~~ilrp~~~~~~~----~~~~~~~~~~~~--~~~~~g~~~~~~i~~~Dva~~~~~~l~-----~~~ 189 (289)
T 3e48_A 125 SRLLST----SGIDYTYVRMAMYMDPL----KPYLPELMNMHK--LIYPAGDGRINYITRNDIARGVIAIIK-----NPD 189 (289)
T ss_dssp HHHHHH----HCCEEEEEEECEESTTH----HHHHHHHHHHTE--ECCCCTTCEEEEECHHHHHHHHHHHHH-----CGG
T ss_pred HHHHHH----cCCCEEEEecccccccc----HHHHHHHHHCCC--EecCCCCceeeeEEHHHHHHHHHHHHc-----CCC
Confidence 666665 58999999999999873 222333333332 345678889999999999999999998 344
Q ss_pred CCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH----HHhccc
Q 007866 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV----QLASRT 323 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 323 (586)
..|++||++ ++.+|+.|+++.+.+.+|.+.....+|...... ....+ ........ ......
T Consensus 190 ~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~p-----~~~~~~~~~~~~~~~~g~ 254 (289)
T 3e48_A 190 TWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAE---------MYDEP-----KGFGALLASMYHAGARGL 254 (289)
T ss_dssp GTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHH---------HTCCS-----TTHHHHHHHHHHHHHTTT
T ss_pred cCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHH---------HhcCC-----ccHHHHHHHHHHHHHCCC
Confidence 558899999 999999999999999999987777777653211 11100 00111111 111122
Q ss_pred eeechhhHhhccCCCCCCChHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSS 349 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~ 349 (586)
...+.+..++.+|++|+ +++|.+++
T Consensus 255 ~~~~~~~~~~~~G~~p~-~~~~~~~~ 279 (289)
T 3e48_A 255 LDQESNDFKQLVNDQPQ-TLQSFLQE 279 (289)
T ss_dssp TCCCCSHHHHHHSSCCC-CHHHHHHC
T ss_pred ccccCchHHHHhCCCCC-CHHHHHHH
Confidence 33456677888999998 88886554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-30 Score=248.59 Aligned_cols=209 Identities=16% Similarity=0.110 Sum_probs=170.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~~~D~ 87 (586)
|+|+||||||+||++++++|+++| ++|+++ .|++++. .. ..+++++.+|+.| .+++.++++++|+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~--~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~ 66 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAG--------ARKVEQV--PQ---YNNVKAVHFDVDWTPEEMAKQLHGMDA 66 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEE--------ESSGGGS--CC---CTTEEEEECCTTSCHHHHHTTTTTCSE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEE--------ECCccch--hh---cCCceEEEecccCCHHHHHHHHcCCCE
Confidence 589999999999999999999999 599994 4443311 11 1579999999999 9999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+... ...+++|+.++.+++++|++.+++|+||+||.++++.. +.+| . +..|.++|+.+|..+
T Consensus 67 vi~~ag~~~-----~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~-----~~~e-~--~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 67 IINVSGSGG-----KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE-----KWIG-A--GFDALKDYYIAKHFA 133 (219)
T ss_dssp EEECCCCTT-----SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG-----GCCS-H--HHHHTHHHHHHHHHH
T ss_pred EEECCcCCC-----CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC-----cccc-c--ccccccHHHHHHHHH
Confidence 999999863 23678899999999999999999999999998877432 3344 2 346788999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|++++. ..|++++++||+.+||+.....+ .. ++..++++|++|+|++++.+++ .+.
T Consensus 134 e~~~~~---~~~i~~~ilrp~~v~g~~~~~~~--------------~~--~~~~~~~i~~~Dva~~i~~~l~-----~~~ 189 (219)
T 3dqp_A 134 DLYLTK---ETNLDYTIIQPGALTEEEATGLI--------------DI--NDEVSASNTIGDVADTIKELVM-----TDH 189 (219)
T ss_dssp HHHHHH---SCCCEEEEEEECSEECSCCCSEE--------------EE--SSSCCCCEEHHHHHHHHHHHHT-----CGG
T ss_pred HHHHHh---ccCCcEEEEeCceEecCCCCCcc--------------cc--CCCcCCcccHHHHHHHHHHHHh-----Ccc
Confidence 999962 37999999999999998643221 12 3677899999999999999998 455
Q ss_pred CCCcEEEEeCCCCcCHHHHHHH
Q 007866 248 VAGMAFFITNLEPIKFWDFLSI 269 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~ei~~~ 269 (586)
..|++||+++++ .++.|+.+.
T Consensus 190 ~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp GTTEEEEEEECS-EEHHHHHHT
T ss_pred ccCcEEEeCCCC-ccHHHHHHH
Confidence 678999998864 888887754
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=251.18 Aligned_cols=242 Identities=18% Similarity=0.126 Sum_probs=185.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|+||||||+||++++++|+++|.++|++ +.|++++.. ...+...+++++.+|+.|++++.++++++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~--------~~R~~~~~~-~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRV--------VTRNPRKKA-AKELRLQGAEVVQGDQDDQVIMELALNGAYA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEE--------EESCTTSHH-HHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEE--------EEcCCCCHH-HHHHHHCCCEEEEecCCCHHHHHHHHhcCCE
Confidence 5899999999999999999999998339999 445433110 0111124689999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+++... ....+.|+.++.+++++|+++|++|+||+||.++|+.. +. .+..+|+.+|..+
T Consensus 76 vi~~a~~~~-----~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~--------~~-----~~~~~y~~sK~~~ 137 (299)
T 2wm3_A 76 TFIVTNYWE-----SCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLT--------AG-----RLAAAHFDGKGEV 137 (299)
T ss_dssp EEECCCHHH-----HTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHT--------TT-----SCCCHHHHHHHHH
T ss_pred EEEeCCCCc-----cccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccC--------CC-----cccCchhhHHHHH
Confidence 999997531 11245788999999999999999999999998887421 11 2457899999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce-EEEcCCCccccccchhHHHHHHHHHHHHhhcccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK-FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~-~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~ 246 (586)
|+++++ .|++++++||+.+||+....+.+ .....|+.. ...+.++..++|+|++|+|++++.+++.. +
T Consensus 138 e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~----~ 206 (299)
T 2wm3_A 138 EEYFRD----IGVPMTSVRLPCYFENLLSHFLP---QKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMP----E 206 (299)
T ss_dssp HHHHHH----HTCCEEEEECCEEGGGGGTTTCC---EECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSH----H
T ss_pred HHHHHH----CCCCEEEEeecHHhhhchhhcCC---cccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcCh----h
Confidence 999987 48999999999999975322111 112344321 22334778899999999999999998721 1
Q ss_pred cCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHH
Q 007866 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (586)
Q Consensus 247 ~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~ 288 (586)
...|++|++++ +++|+.|+++.+.+.+|.+.+...+|.+..
T Consensus 207 ~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~ 247 (299)
T 2wm3_A 207 KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDY 247 (299)
T ss_dssp HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHH
T ss_pred hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHH
Confidence 24678999987 679999999999999999877777887653
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=246.65 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=174.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCe-EEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~-~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++|+|+||||||+||++++++|+++| ++|+++ .|++++. ..+...++ +++.+|+. +++.+++.+
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~--------~R~~~~~---~~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG-HEPVAM--------VRNEEQG---PELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESSGGGH---HHHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEE--------ECChHHH---HHHHhCCCceEEEcccH--HHHHHHHcC
Confidence 467999999999999999999999999 499994 4443311 11122367 99999998 778888999
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
+|+|||+||... ..++...+++|+.++.+++++|++.+++|+||+||.+.+. .+..| .+.++|+.+|
T Consensus 85 ~D~vi~~ag~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~---------~~~~~---~~~~~Y~~sK 151 (236)
T 3e8x_A 85 IDAVVFAAGSGP-HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVD---------PDQGP---MNMRHYLVAK 151 (236)
T ss_dssp CSEEEECCCCCT-TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSC---------GGGSC---GGGHHHHHHH
T ss_pred CCEEEECCCCCC-CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCC---------CCCCh---hhhhhHHHHH
Confidence 999999999863 4678999999999999999999999999999999955431 11111 5678999999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcc
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
..+|.+++. .|++++++||+.++|+.... ......++...++++|++|+|++++.+++
T Consensus 152 ~~~e~~~~~----~gi~~~~lrpg~v~~~~~~~-------------~~~~~~~~~~~~~~i~~~Dva~~~~~~~~----- 209 (236)
T 3e8x_A 152 RLADDELKR----SSLDYTIVRPGPLSNEESTG-------------KVTVSPHFSEITRSITRHDVAKVIAELVD----- 209 (236)
T ss_dssp HHHHHHHHH----SSSEEEEEEECSEECSCCCS-------------EEEEESSCSCCCCCEEHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHH----CCCCEEEEeCCcccCCCCCC-------------eEEeccCCCcccCcEeHHHHHHHHHHHhc-----
Confidence 999999984 69999999999999986422 12344566677999999999999999987
Q ss_pred cccCCCcEEEEeCCCCcCHHHHHHHHH
Q 007866 245 MVSVAGMAFFITNLEPIKFWDFLSIIL 271 (586)
Q Consensus 245 ~~~~~g~~~ni~~~~~~t~~ei~~~i~ 271 (586)
.+...|++|+++++ ++++.|+++.++
T Consensus 210 ~~~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CGGGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred CccccCCeEEEeCC-CcCHHHHHHHhc
Confidence 45578899999887 599999998765
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=262.37 Aligned_cols=238 Identities=16% Similarity=0.123 Sum_probs=180.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEcc-CCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD-VRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~D-l~d~~~l~~~l~~~D 86 (586)
+|+|+|||||||||++++++|+++| ++|+++ .|++++..........+++++.+| +.|++++.++++++|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d 75 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQ--------VHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAH 75 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEE--------ESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEE--------ECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence 5899999999999999999999999 599994 444331100000012368899999 999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCcc--ccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTAD--VVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~--vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+++... .+.|..+ ++++++|+++| ++||||+||.+ .|+ ..+.++|+.+
T Consensus 76 ~Vi~~a~~~~--------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~----------------~~~~~~y~~s 130 (352)
T 1xgk_A 76 LAFINTTSQA--------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG----------------PWPAVPMWAP 130 (352)
T ss_dssp EEEECCCSTT--------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS----------------SCCCCTTTHH
T ss_pred EEEEcCCCCC--------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC----------------CCCCccHHHH
Confidence 9999987531 1346766 99999999999 99999999986 231 1234679999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHH--hcCCCce-EEEcCCCccccccch-hHHHHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNL--AKPGWTK-FIIGSGENMSDFTYV-ENVAHAHVCAAE 239 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~--~~~g~~~-~i~g~g~~~~~~i~v-~Dva~ai~~ale 239 (586)
|..+|+++++ .|++++++||+ +||++.......++.. ...|... .+++++++.++++|+ +|+|++++.+++
T Consensus 131 K~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~ 205 (352)
T 1xgk_A 131 KFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 205 (352)
T ss_dssp HHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHh
Confidence 9999999987 38999999976 7888654321111111 2344432 346778889999999 899999999987
Q ss_pred HhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHH
Q 007866 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~ 288 (586)
.. .....|++||+++ +++|+.|+++.+.+.+|.+.+...+|.+.+
T Consensus 206 ~~---~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~~ 250 (352)
T 1xgk_A 206 DG---PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEI 250 (352)
T ss_dssp HC---HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCCC
T ss_pred CC---chhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHHH
Confidence 21 0123678999996 679999999999999999877777875543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=237.02 Aligned_cols=220 Identities=13% Similarity=0.005 Sum_probs=162.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+||||||||+||++++++|+++| ++|+++ .|++.+. ..+...+++++.+|+.|.++ ++++++|+|
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~---~~~~~~~~~~~~~D~~d~~~--~~~~~~d~v 66 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAV--------VRDPQKA---ADRLGATVATLVKEPLVLTE--ADLDSVDAV 66 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESCHHHH---HHHTCTTSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEE--------Eeccccc---ccccCCCceEEecccccccH--hhcccCCEE
Confidence 589999999999999999999999 599994 4443311 11123578999999999887 888999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCC-CCCCCCcccCCCCCChHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI-HNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~-~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
||+|+..... ...+.|+.++++++++|+++| +|+|++||.++++...... ...+|.. ...|.+.|+.+|..+
T Consensus 67 i~~ag~~~~~----~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~sK~~~ 139 (224)
T 3h2s_A 67 VDALSVPWGS----GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPE--SAASQPWYDGALYQY 139 (224)
T ss_dssp EECCCCCTTS----SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCG--GGGGSTTHHHHHHHH
T ss_pred EECCccCCCc----chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCC--CCccchhhHHHHHHH
Confidence 9999986211 124789999999999999999 9999999997765433221 1233332 345688999999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|.+ ..+.+..|++++++||+.+||++..... ......+ ..+...++++|++|+|++++.+++ .+.
T Consensus 140 e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~~------~~~~~~~---~~~~~~~~~i~~~DvA~~~~~~l~-----~~~ 204 (224)
T 3h2s_A 140 YEY-QFLQMNANVNWIGISPSEAFPSGPATSY------VAGKDTL---LVGEDGQSHITTGNMALAILDQLE-----HPT 204 (224)
T ss_dssp HHH-HHHTTCTTSCEEEEEECSBCCCCCCCCE------EEESSBC---CCCTTSCCBCCHHHHHHHHHHHHH-----SCC
T ss_pred HHH-HHHHhcCCCcEEEEcCccccCCCcccCc------eeccccc---ccCCCCCceEeHHHHHHHHHHHhc-----Ccc
Confidence 954 5565568999999999999998543211 0111111 123455789999999999999998 577
Q ss_pred CCCcEEEEeCCCCcCHH
Q 007866 248 VAGMAFFITNLEPIKFW 264 (586)
Q Consensus 248 ~~g~~~ni~~~~~~t~~ 264 (586)
..|++|++++.++..+.
T Consensus 205 ~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 205 AIRDRIVVRDADLEHHH 221 (224)
T ss_dssp CTTSEEEEEECC-----
T ss_pred ccCCEEEEecCcchhcc
Confidence 88999999987665543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=250.43 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=179.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++++|+||||||+||++++++|+++| ++|+++ .|.++.. .....+...+++++.+|+.|++++.++++++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l--------~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~ 80 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVF--------TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKV 80 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEE--------ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCC-CcEEEE--------ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCC
Confidence 34689999999999999999999999 599994 4443210 0000012346899999999999999999999
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCC-CChHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDL 163 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~~~Y~~s 163 (586)
|+|||+++.. ++.++++++++|+++| ++|||+ | +||.. .+|.. +..| ...| .+
T Consensus 81 d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~s 135 (318)
T 2r6j_A 81 DVVISALAFP------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVE------EDRIN--ALPPFEALI-ER 135 (318)
T ss_dssp SEEEECCCGG------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSC------TTTCC--CCHHHHHHH-HH
T ss_pred CEEEECCchh------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccC------ccccc--CCCCcchhH-HH
Confidence 9999999863 1456889999999998 999985 3 35421 12222 2233 3568 99
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|+++++ .|++++++||+.+++. .++.+......+..+.++++++..++|+|++|+|++++.+++
T Consensus 136 K~~~e~~~~~----~~~~~~~lr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~---- 203 (318)
T 2r6j_A 136 KRMIRRAIEE----ANIPYTYVSANCFASY----FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVAT---- 203 (318)
T ss_dssp HHHHHHHHHH----TTCCBEEEECCEEHHH----HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHh----cCCCeEEEEcceehhh----hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhc----
Confidence 9999999987 5899999999887763 233344333455566788899999999999999999999887
Q ss_pred ccccCCCcEEEEeC-CCCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 244 RMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 244 ~~~~~~g~~~ni~~-~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+...++.|++++ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 -~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (318)
T 2r6j_A 204 -DPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVPEEE 247 (318)
T ss_dssp -CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEECHHH
T ss_pred -CccccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 3445578888876 478999999999999999988777888764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-28 Score=235.34 Aligned_cols=220 Identities=14% Similarity=0.061 Sum_probs=145.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|+||||||+||++++++|+++| ++|++ +.|++++. . .+. .+++++.+|+.|.++ +.+.++|+|
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~--------~~R~~~~~--~-~~~-~~~~~~~~D~~d~~~--~~~~~~d~v 65 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTA--------IVRNAGKI--T-QTH-KDINILQKDIFDLTL--SDLSDQNVV 65 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEE--------EESCSHHH--H-HHC-SSSEEEECCGGGCCH--HHHTTCSEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEE--------EEcCchhh--h-hcc-CCCeEEeccccChhh--hhhcCCCEE
Confidence 689999999999999999999999 59999 45543311 1 111 578999999999887 788999999
Q ss_pred EEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHH
Q 007866 89 FYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 89 ih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
||+|+.... ..+.|+.++.+++++|+++|++|+|++||.++|+..+. ..+..|+. +..|.+.|+.+|..+|
T Consensus 66 i~~ag~~~~------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-~~~~~~~~--~~~~~~~y~~~k~~~e 136 (221)
T 3ew7_A 66 VDAYGISPD------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDED-GNTLLESK--GLREAPYYPTARAQAK 136 (221)
T ss_dssp EECCCSSTT------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC----------------------CCCSCCHHHHHH
T ss_pred EECCcCCcc------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCC-CccccccC--CCCCHHHHHHHHHHHH
Confidence 999998522 24569999999999999999999999999988753322 22344444 3467788999999999
Q ss_pred HHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccC
Q 007866 169 ALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSV 248 (586)
Q Consensus 169 ~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~ 248 (586)
.+........|++++++||+.+||++... ..+ ...+..+...+++ .+++|++|+|++++.+++ .+..
T Consensus 137 ~~~~~~~~~~gi~~~ivrp~~v~g~~~~~--~~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~-----~~~~ 203 (221)
T 3ew7_A 137 QLEHLKSHQAEFSWTYISPSAMFEPGERT--GDY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIE-----RPNH 203 (221)
T ss_dssp HHHHHHTTTTTSCEEEEECSSCCCCC-----------------------------CCCHHHHHHHHHHHHH-----SCSC
T ss_pred HHHHHHhhccCccEEEEeCcceecCCCcc--Cce---EeccccceecCCC---CceEeHHHHHHHHHHHHh-----Cccc
Confidence 97322221579999999999999984321 111 1122333344443 368999999999999999 5778
Q ss_pred CCcEEEEeCCCCcCHHH
Q 007866 249 AGMAFFITNLEPIKFWD 265 (586)
Q Consensus 249 ~g~~~ni~~~~~~t~~e 265 (586)
.|++||++++.+.+..|
T Consensus 204 ~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 204 LNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp TTSEEECCC--------
T ss_pred cCCEEEECCCCcccccc
Confidence 89999999988776554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=239.85 Aligned_cols=229 Identities=15% Similarity=0.086 Sum_probs=172.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
++|+|+||||+|+||++++++|+++ | ++|+++++ ++.+. .. + ..+++++.+|+.|.+++.+++++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r--------~~~~~--~~-~-~~~~~~~~~D~~d~~~~~~~~~~ 69 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVR--------SAQGK--EK-I-GGEADVFIGDITDADSINPAFQG 69 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEES--------CHHHH--HH-T-TCCTTEEECCTTSHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEc--------CCCch--hh-c-CCCeeEEEecCCCHHHHHHHHcC
Confidence 5789999999999999999999999 7 59999544 32210 00 1 24678999999999999999999
Q ss_pred CCEEEEcccCCCC---------C-------CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 85 ASTVFYVDATDLN---------T-------DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 85 ~D~Vih~aa~~~~---------~-------~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
+|+|||+|+.... . .+....+++|+.++.++++++++++++|+||+||.+++. +
T Consensus 70 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~----------~ 139 (253)
T 1xq6_A 70 IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN----------P 139 (253)
T ss_dssp CSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC----------T
T ss_pred CCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC----------C
Confidence 9999999997521 0 111246799999999999999999999999999998752 1
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchh
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~ 228 (586)
..|......+.|+.+|..+|.+++. .|++++++||+.+||+..... . .. .+....+++ ...+++|++
T Consensus 140 ~~~~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~-~----~~-~~~~~~~~~---~~~~~~~~~ 206 (253)
T 1xq6_A 140 DHPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR-E----LL-VGKDDELLQ---TDTKTVPRA 206 (253)
T ss_dssp TCGGGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS-C----EE-EESTTGGGG---SSCCEEEHH
T ss_pred CCccccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh-h----hh-ccCCcCCcC---CCCcEEcHH
Confidence 1111111225689999999999876 689999999999999864311 0 00 000001111 135689999
Q ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEeCCC---CcCHHHHHHHHHHHcCC
Q 007866 229 NVAHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGLGY 276 (586)
Q Consensus 229 Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~---~~t~~ei~~~i~~~~g~ 276 (586)
|+|++++.+++ .+...|++||+++++ ++|+.|+++.+.+.+|+
T Consensus 207 Dva~~~~~~~~-----~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 207 DVAEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHc-----CccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 99999999887 344568899999864 69999999999998875
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=243.83 Aligned_cols=234 Identities=12% Similarity=0.099 Sum_probs=178.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCC-CCC--CCCC---CCCCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNS--LLPD---SLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~-~~~--~~~~---~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+||+|+||||||+||++++++|+++| ++|+++ .|.+ +.. .... .+...+++++.+|+.|++++.+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~--------~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~ 73 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIY--------ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVS 73 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEE--------ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEE--------ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHH
Confidence 46889999999999999999999999 599994 4433 100 0000 0113468999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCC-CC
Q 007866 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QD 158 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~~ 158 (586)
+++++|+|||+++... +.++.+++++|+++| ++|||+ ++||.. .+|+. +..| .+
T Consensus 74 a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~----S~~g~~------~~~~~--~~~p~~~ 129 (321)
T 3c1o_A 74 VLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFLP----SDFGCE------EDRIK--PLPPFES 129 (321)
T ss_dssp HHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEEC----SCCSSC------GGGCC--CCHHHHH
T ss_pred HHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEec----cccccC------ccccc--cCCCcch
Confidence 9999999999998631 566889999999999 999983 245421 12222 2233 45
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHH---HhcCCCceEEEcCCCccccccchhHHHHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVN---LAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~---~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~ 235 (586)
.| .+|..+|++++. .|++++++||+.++|+. .+.+.. ....++.+.++++++..++++|++|+|++++
T Consensus 130 ~y-~sK~~~e~~~~~----~~~~~~~lrp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 130 VL-EKKRIIRRAIEA----AALPYTYVSANCFGAYF----VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHH----HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHH----cCCCeEEEEeceecccc----ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHH
Confidence 79 999999999986 47999999999888742 222322 1234455678888999999999999999999
Q ss_pred HHHHHhhcccccCCCcEEEEeC-CCCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 236 CAAEALDSRMVSVAGMAFFITN-LEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 236 ~ale~~~~~~~~~~g~~~ni~~-~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+++ .+...|++|++++ ++.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 201 ~~l~-----~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (321)
T 3c1o_A 201 KVAC-----DPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMPDEQ 248 (321)
T ss_dssp HHHH-----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEECHHH
T ss_pred HHHh-----CccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCCHHH
Confidence 9988 3455688899986 478999999999999999988877888654
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=234.11 Aligned_cols=205 Identities=16% Similarity=0.062 Sum_probs=162.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++|+|+||||+|+||++++++|+++|+ ++|++ +.|++.+ ...+++++.+|+.|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~--------~~r~~~~-------~~~~~~~~~~D~~~~~~~~~~~--~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIA--------PARKALA-------EHPRLDNPVGPLAELLPQLDGS--I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC--------CBSSCCC-------CCTTEECCBSCHHHHGGGCCSC--C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEE--------EeCCCcc-------cCCCceEEeccccCHHHHHHhh--h
Confidence 468999999999999999999999995 38999 4554432 1346888999999998888777 9
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|+|||+|+... ...+++..+++|+.++.+++++|++.+++|+||+||.++|+ .|.++|+.+|
T Consensus 67 d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~-----------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC-----------------CCccHHHHHH
Confidence 99999999863 34568889999999999999999999999999999999873 2456899999
Q ss_pred HHHHHHHHhhcCCCCce-EEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 165 AQAEALVLFANNIDGLL-TCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~-~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
..+|++++. .|++ ++++||+.+||++.... +...... ...+. ++ ..++++|++|+|++++.+++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~---~~~~~~~-~~~~~-~~--~~~~~i~~~Dva~~~~~~~~---- 194 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR---LAEILAA-PIARI-LP--GKYHGIEACDLARALWRLAL---- 194 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE---GGGGTTC-CCC-------CHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch---HHHHHHH-hhhhc-cC--CCcCcEeHHHHHHHHHHHHh----
Confidence 999999887 4899 99999999999976521 1122221 11122 23 27899999999999999987
Q ss_pred ccccCCCcEEEEeCCCCcCH
Q 007866 244 RMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~ 263 (586)
.+ .+++||+++++.+++
T Consensus 195 -~~--~~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 195 -EE--GKGVRFVESDELRKL 211 (215)
T ss_dssp -CC--CSEEEEEEHHHHHHH
T ss_pred -cC--CCCceEEcHHHHHHh
Confidence 23 278999998765554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=244.42 Aligned_cols=241 Identities=13% Similarity=0.075 Sum_probs=180.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CC--CCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LL--PDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~---~~--~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+|+|+||||||+||++++++|+++| ++|++ +.|..... .. ...+...+++++.+|+.|++++.+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYV--------LFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEE--------ECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEE--------EECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH
Confidence 5789999999999999999999999 59999 45543210 00 00012357899999999999999999
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCC-CChH
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLM 160 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~~~Y 160 (586)
+++|+|||+++..... .|+.++.+++++|+++| ++|||+ | +||..... . +. +..| .+.|
T Consensus 75 ~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~---~--~~--~~~p~~~~y 135 (313)
T 1qyd_A 75 KQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDI---M--EH--ALQPGSITF 135 (313)
T ss_dssp TTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTS---C--CC--CCSSTTHHH
T ss_pred hCCCEEEECCccccch--------hhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCccc---c--cc--CCCCCcchH
Confidence 9999999999875321 26788999999999999 999995 3 45422110 1 11 2234 4568
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~ 240 (586)
.+|..+|+++++ .|++++++||+.++|+....+..........++.+.++++++..++++|++|+|++++.+++
T Consensus 136 -~sK~~~e~~~~~----~g~~~~ilrp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~- 209 (313)
T 1qyd_A 136 -IDKRKVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID- 209 (313)
T ss_dssp -HHHHHHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT-
T ss_pred -HHHHHHHHHHHh----cCCCeEEEEeceeccccccccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHh-
Confidence 999999999986 58999999999998753221111000011234455677888999999999999999999887
Q ss_pred hhcccccCCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCCCccCCHH
Q 007866 241 LDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTG 286 (586)
Q Consensus 241 ~~~~~~~~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~~i~vp~~ 286 (586)
.+...|+.|+++++ +.+|+.|+++.+.+.+|.+.+...+|..
T Consensus 210 ----~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~ 252 (313)
T 1qyd_A 210 ----DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 252 (313)
T ss_dssp ----CGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred ----CcccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECCHH
Confidence 34456788888875 7899999999999999998777777754
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=215.36 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=155.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
+|+|+||||||+||++++++|+++| ++|+++++ ++.+. . .....+++++.+|+.|.+++.++++++|+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r--------~~~~~--~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~ 70 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR--------DSSRL--P-SEGPRPAHVVVGDVLQAADVDKTVAGQDA 70 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES--------CGGGS--C-SSSCCCSEEEESCTTSHHHHHHHHTTCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEe--------Chhhc--c-cccCCceEEEEecCCCHHHHHHHHcCCCE
Confidence 3799999999999999999999999 59999544 33311 1 11235789999999999999999999999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHH
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQA 167 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~ 167 (586)
|||+|+..... ++ .++|+.++.++++++++++++|+||+||.++|+.... .| .+.++|+.+|..+
T Consensus 71 vi~~a~~~~~~-~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~--------~~---~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 71 VIVLLGTRNDL-SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK--------VP---PRLQAVTDDHIRM 135 (206)
T ss_dssp EEECCCCTTCC-SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC--------SC---GGGHHHHHHHHHH
T ss_pred EEECccCCCCC-Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc--------cc---ccchhHHHHHHHH
Confidence 99999976432 22 2589999999999999999999999999999853211 11 1567899999999
Q ss_pred HHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc
Q 007866 168 EALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247 (586)
Q Consensus 168 E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~ 247 (586)
|++++. .+++++++||+.+ |++... +......++ ....+++|++|+|++++.+++ .+.
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~-----------~~~~~~~~~-~~~~~~i~~~Dva~~~~~~~~-----~~~ 193 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLT-----------GAYTVTLDG-RGPSRVISKHDLGHFMLRCLT-----TDE 193 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCC-----------SCCEEESSS-CSSCSEEEHHHHHHHHHHTTS-----CST
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCC-----------cceEecccC-CCCCCccCHHHHHHHHHHHhc-----Ccc
Confidence 999976 6899999999997 443211 010011111 111589999999999998887 455
Q ss_pred CCCcEEEEeCCC
Q 007866 248 VAGMAFFITNLE 259 (586)
Q Consensus 248 ~~g~~~ni~~~~ 259 (586)
..|++|++++++
T Consensus 194 ~~g~~~~i~~g~ 205 (206)
T 1hdo_A 194 YDGHSTYPSHQY 205 (206)
T ss_dssp TTTCEEEEECCC
T ss_pred ccccceeeeccc
Confidence 678999999875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=238.46 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=177.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCC-CCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSE-SNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~-~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
||+|+||||||+||++++++|+++| ++|+++++..+ ....+ ++......+...+++++.+|+.|++++.++++++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~--~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTI--TAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSC--CSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCc--ccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCC
Confidence 6789999999999999999999999 49999444320 00000 10000000112468999999999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCC-CChHHHHH
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDLMCDLK 164 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~~~Y~~sK 164 (586)
+|||+++... +.++.+++++|+++| ++|||+ | +||.. .+|.. +..| .+.| .+|
T Consensus 79 ~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~y-~sK 133 (307)
T 2gas_A 79 IVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLD------VDRHD--AVEPVRQVF-EEK 133 (307)
T ss_dssp EEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHHH-HHH
T ss_pred EEEECCcccc------------cccHHHHHHHHHhcCCceEEee-c---ccccC------ccccc--CCCcchhHH-HHH
Confidence 9999998742 456789999999998 999984 3 45421 12222 2234 4578 999
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcc
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~ 244 (586)
..+|++++. .|++++++||+.++|+....+... ......+..+.++++++..++++|++|+|++++.+++
T Consensus 134 ~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~----- 203 (307)
T 2gas_A 134 ASIRRVIEA----EGVPYTYLCCHAFTGYFLRNLAQL-DATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAN----- 203 (307)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEETTTTGGGTTCT-TCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHH----cCCCeEEEEcceeecccccccccc-ccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHc-----
Confidence 999999987 489999999999887542211110 0012234456778888999999999999999999987
Q ss_pred cccCCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 245 MVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 245 ~~~~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+...|+.|++.++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 204 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 247 (307)
T 2gas_A 204 DPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQ 247 (307)
T ss_dssp CGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEECHHH
T ss_pred CccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecCHHH
Confidence 34456788888764 68999999999999999987777777553
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=235.63 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=178.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CC--CCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LL--PDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~--~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
||+|+||||||+||++++++|+++| ++|++ +.|..... .. ...+...+++++.+|+.|++++.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~--------l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFL--------LVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEE--------ECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEE--------EECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHH
Confidence 6789999999999999999999999 59999 44443210 00 0011235789999999999999999
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCCCCCCCCCCCcccCCCC-CCh
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF-QDL 159 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p-~~~ 159 (586)
++++|+|||+++.. ++.++.+++++|+++| ++|||+ | +||.. .+|.. +..| .+.
T Consensus 75 ~~~~d~vi~~a~~~------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~--~~~p~~~~ 130 (308)
T 1qyc_A 75 VKNVDVVISTVGSL------------QIESQVNIIKAIKEVGTVKRFFP-S---EFGND------VDNVH--AVEPAKSV 130 (308)
T ss_dssp HHTCSEEEECCCGG------------GSGGGHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC--CCTTHHHH
T ss_pred HcCCCEEEECCcch------------hhhhHHHHHHHHHhcCCCceEee-c---ccccC------ccccc--cCCcchhH
Confidence 99999999999863 1456789999999998 999984 3 35421 12222 2234 457
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
| .+|..+|+++++ .|++++++||+.++|+........ ......++.+.++++++..++|+|++|+|++++.+++
T Consensus 131 y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 131 F-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQA-GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp H-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCT-TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS
T ss_pred H-HHHHHHHHHHHh----cCCCeEEEEeceeccccccccccc-cccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHh
Confidence 8 999999999987 479999999999988533221110 0012244556788899999999999999999998876
Q ss_pred HhhcccccCCCcEEEEeCC-CCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 240 ALDSRMVSVAGMAFFITNL-EPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 240 ~~~~~~~~~~g~~~ni~~~-~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+...++.|+++++ +.+|+.|+++.+.+.+|.+.+...+|...
T Consensus 205 -----~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~ 248 (308)
T 1qyc_A 205 -----DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 248 (308)
T ss_dssp -----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred -----CccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCCHHH
Confidence 34456788998764 78999999999999999988777787643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-26 Score=221.91 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++|+|+||||+|+||++++++|+++|++ +|+++++. +++. . .....++.++.+|+.|.+++.++++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~--------~~~~--~-~~~~~~~~~~~~D~~d~~~~~~~~~~~ 85 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR--------KLTF--D-EEAYKNVNQEVVDFEKLDDYASAFQGH 85 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS--------CCCC--C-SGGGGGCEEEECCGGGGGGGGGGGSSC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC--------CCCc--c-ccccCCceEEecCcCCHHHHHHHhcCC
Confidence 4689999999999999999999999932 89995443 2211 0 011236789999999999999999999
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
|+|||+||......+++..+++|+.++.++++++++.+++++|++||.++|+. +.++|+.+|.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~-----------------~~~~Y~~sK~ 148 (242)
T 2bka_A 86 DVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS-----------------SNFLYLQVKG 148 (242)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT-----------------CSSHHHHHHH
T ss_pred CEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC-----------------CcchHHHHHH
Confidence 99999999863334567889999999999999999999999999999988731 3468999999
Q ss_pred HHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 166 QAEALVLFANNIDGL-LTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl-~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
.+|.+++.+ ++ +++++||+.+||+..... ...+........+ ..++ ...++|++|+|++++.+++
T Consensus 149 ~~e~~~~~~----~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~dva~~~~~~~~---- 215 (242)
T 2bka_A 149 EVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLP-DSWA----SGHSVPVVTVVRAMLNNVV---- 215 (242)
T ss_dssp HHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCC-TTGG----GGTEEEHHHHHHHHHHHHT----
T ss_pred HHHHHHHhc----CCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccC-cccc----CCcccCHHHHHHHHHHHHh----
Confidence 999999884 56 699999999999975432 2333333322221 1111 2358999999999999887
Q ss_pred ccccCCCcEEEEeC
Q 007866 244 RMVSVAGMAFFITN 257 (586)
Q Consensus 244 ~~~~~~g~~~ni~~ 257 (586)
.+ ..++.|++.+
T Consensus 216 -~~-~~~~~~~~~~ 227 (242)
T 2bka_A 216 -RP-RDKQMELLEN 227 (242)
T ss_dssp -SC-CCSSEEEEEH
T ss_pred -Cc-cccCeeEeeH
Confidence 23 3344666654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-25 Score=218.36 Aligned_cols=229 Identities=11% Similarity=-0.007 Sum_probs=164.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
||+|+||||+|+||++++++|+++| ++|++++ |.+++. .. .+.+|+.|.+++.++++
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~--------r~~~~~--~~--------~~~~D~~~~~~~~~~~~~~~~ 61 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-HTVIGID--------RGQADI--EA--------DLSTPGGRETAVAAVLDRCGG 61 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSSSE--EC--------CTTSHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEe--------CChhHc--cc--------cccCCcccHHHHHHHHHHcCC
Confidence 4689999999999999999999999 5999944 433311 00 15789999999988886
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCCC-------CCCccc
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG-------DETLTC 152 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~~-------~E~~p~ 152 (586)
++|+|||+||......+++..+++|+.++.++++++... +.+|+|++||.++|+..... .+. +|+.+.
T Consensus 62 ~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-~~~~~~~~~~~~~~~~ 140 (255)
T 2dkn_A 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAE-LPMVEAMLAGDEARAI 140 (255)
T ss_dssp CCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGG-CHHHHHHHHTCHHHHH
T ss_pred CccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccc-cchhhhhcccchhhhh
Confidence 799999999987546678999999999999999987654 67899999999998643111 011 111110
Q ss_pred -----CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 153 -----CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 153 -----~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
...+.+.|+.+|...|.+++.++.+ .|++++++||+.++|+... .+......+....... + ...++
T Consensus 141 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~ 214 (255)
T 2dkn_A 141 ELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ----ASKADPRYGESTRRFV-A-PLGRG 214 (255)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH----HHHHCTTTHHHHHSCC-C-TTSSC
T ss_pred hhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh----hcccchhhHHHHHHHH-H-HhcCC
Confidence 1135678999999999999988754 6899999999999987421 1111111111100011 2 45679
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHH
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~e 265 (586)
+|++|+|++++.+++.. .....|+.|+++++..++++|
T Consensus 215 ~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 215 SEPREVAEAIAFLLGPQ---ASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp BCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTHHHHHCT
T ss_pred CCHHHHHHHHHHHhCCC---cccceeeEEEecCCeEeeeec
Confidence 99999999999888621 124678999999987666543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=202.58 Aligned_cols=204 Identities=14% Similarity=0.145 Sum_probs=141.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++||+||||||+|+||++++++|+++|.++|+++ .|++++. ..+...+++.+.+|+.|++++.+++++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~--------~R~~~~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 88 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLF--------ARQPAKI---HKPYPTNSQIIMGDVLNHAALKQAMQG 88 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEE--------ESSGGGS---CSSCCTTEEEEECCTTCHHHHHHHHTT
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEE--------EcChhhh---cccccCCcEEEEecCCCHHHHHHHhcC
Confidence 45678999999999999999999999994489994 4443311 112345789999999999999999999
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
+|+|||+++.. +. ...+++++++++++|++|||++||.++|+..+......++.. ...+...|.
T Consensus 89 ~D~vv~~a~~~----~~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~--~~~~~~~~~--- 152 (236)
T 3qvo_A 89 QDIVYANLTGE----DL-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAV--IGEPLKPFR--- 152 (236)
T ss_dssp CSEEEEECCST----TH-------HHHHHHHHHHHHHTTCCEEEEECCCCC------------------CGGGHHHH---
T ss_pred CCEEEEcCCCC----ch-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhc--ccchHHHHH---
Confidence 99999999863 11 134778999999999999999999999975432222223322 223334444
Q ss_pred HHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc-ccccchhHHHHHHHHHHHHhhc
Q 007866 165 AQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM-SDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~-~~~i~v~Dva~ai~~ale~~~~ 243 (586)
.+|+.++. .|++++++||+.++++..... .....+... ..+++.+|+|++++.+++
T Consensus 153 -~~~~~l~~----~gi~~~~vrPg~i~~~~~~~~--------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~---- 209 (236)
T 3qvo_A 153 -RAADAIEA----SGLEYTILRPAWLTDEDIIDY--------------ELTSRNEPFKGTIVSRKSVAALITDIID---- 209 (236)
T ss_dssp -HHHHHHHT----SCSEEEEEEECEEECCSCCCC--------------EEECTTSCCSCSEEEHHHHHHHHHHHHH----
T ss_pred -HHHHHHHH----CCCCEEEEeCCcccCCCCcce--------------EEeccCCCCCCcEECHHHHHHHHHHHHc----
Confidence 45555553 699999999999998753221 111222222 358999999999999998
Q ss_pred cccc-CCCcEEEEeCCC
Q 007866 244 RMVS-VAGMAFFITNLE 259 (586)
Q Consensus 244 ~~~~-~~g~~~ni~~~~ 259 (586)
.+. ..|+.|++++++
T Consensus 210 -~~~~~~g~~~~i~~~~ 225 (236)
T 3qvo_A 210 -KPEKHIGENIGINQPG 225 (236)
T ss_dssp -STTTTTTEEEEEECSS
T ss_pred -CcccccCeeEEecCCC
Confidence 333 568999999875
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-24 Score=213.70 Aligned_cols=234 Identities=15% Similarity=0.062 Sum_probs=167.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
++|+++||||+|+||++++++|+++| ++|++.++.. ++. ..... ...++.++.+|+.|.+++.++++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~ 73 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRT--------EALDDLVAA-YPDRAEAISLDVTDGERIDVVAADV 73 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSG--------GGGHHHHHH-CTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHh-ccCCceEEEeeCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 5999955432 210 00000 13468999999999999888776
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHH----HHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.| ++++++.+++.+.+++|++||.+.+.
T Consensus 74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 143 (281)
T 3m1a_A 74 LARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL---------- 143 (281)
T ss_dssp HHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------
T ss_pred HHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------
Confidence 7899999999751 234567789999999 66666666777888999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-------CcHHHHHHHhcCCCceEEEcC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-------~~~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+.++|+.||+..|.+.+.++.+ +|++++++|||.+.++... ...+.+......... ...
T Consensus 144 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 215 (281)
T 3m1a_A 144 -----SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQ---LVQ 215 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHH---HHH
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHH---HHh
Confidence 2345678999999999999887665 7999999999999877422 111111111111111 111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHc
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~ 274 (586)
+....++.+++|+|++++.+++ ....+..|+++++....+.+....+.+.+
T Consensus 216 ~~~~~~~~~~~dva~a~~~~~~------~~~~~~~~~l~s~~~~~i~g~~~~i~~~~ 266 (281)
T 3m1a_A 216 GSDGSQPGDPAKAAAAIRLALD------TEKTPLRLALGGDAVDFLTGHLDSVRAEL 266 (281)
T ss_dssp C-----CBCHHHHHHHHHHHHH------SSSCCSEEEESHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHh------CCCCCeEEecCchHHHHHHHHHHHHHHHH
Confidence 2334567889999999999998 33456799999877677777777776654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=208.43 Aligned_cols=237 Identities=16% Similarity=0.155 Sum_probs=174.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.... .. .....+ ...++.++.+|+.|.+++.++++
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~----~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 85 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDH----GQ---KVCNNIGSPDVISFVHCDVTKDEDVRNLVDT 85 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----HH---HHHHHHCCTTTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhH----HH---HHHHHhCCCCceEEEECCCCCHHHHHHHHHH
Confidence 356899999999999999999999999 499995543210 00 000001 11268999999999999888876
Q ss_pred ------CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||.... ..+++..+++|+.++.++++++.. .+.+++|++||..+|...
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 160 (278)
T 2bgk_A 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG----- 160 (278)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-----
T ss_pred HHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-----
Confidence 79999999997521 134677899999999999998876 367799999999887421
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEEcCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~---~~l~~~~~~g~~~~i~g~g 218 (586)
..+...|+.+|...|.+.+.++.+ +|++++++||+.++|+...... +.......... +
T Consensus 161 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-------~ 224 (278)
T 2bgk_A 161 ---------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQA-------A 224 (278)
T ss_dssp ---------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHT-------C
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhcc-------c
Confidence 124568999999999999887643 5899999999999998654321 22222221111 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHc
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGL 274 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~ 274 (586)
.....+++++|+|++++.++.. ......|+.|++.++..+++.|+++.+.+.+
T Consensus 225 ~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 225 NLKGTLLRAEDVADAVAYLAGD---ESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SSCSCCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred ccccccCCHHHHHHHHHHHcCc---ccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 1234689999999999988751 1234678999999999999999999886543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=192.84 Aligned_cols=201 Identities=12% Similarity=0.046 Sum_probs=147.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hcCCcEEEEecCCcccccCCCCC-CCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSES-NSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~-~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
||++|+||||+|+||++++++|+ ++|+ +|+++++ +++ +. ..+ ...++..+.+|+.|.+++.+++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r--------~~~~~~---~~~~~~~~~~~~~~~D~~d~~~~~~~~ 71 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDM-HITLYGR--------QLKTRI---PPEIIDHERVTVIEGSFQNPGXLEQAV 71 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEES--------SHHHHS---CHHHHTSTTEEEEECCTTCHHHHHHHH
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEec--------Cccccc---hhhccCCCceEEEECCCCCHHHHHHHH
Confidence 34569999999999999999999 8994 9999544 322 11 111 2357899999999999999999
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC-hHH
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMC 161 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~-~Y~ 161 (586)
+++|+|||+|+.. |+. ++++++++++.|++|+|++||.++|+..+.. ..+ + ...... +|+
T Consensus 72 ~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~---~~~--~-~~~~~~~~y~ 132 (221)
T 3r6d_A 72 TNAEVVFVGAMES------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA---LEK--W-TFDNLPISYV 132 (221)
T ss_dssp TTCSEEEESCCCC------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH---HHH--H-HHHTSCHHHH
T ss_pred cCCCEEEEcCCCC------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc---ccc--c-cccccccHHH
Confidence 9999999999863 444 8999999999999999999999998532110 000 0 001223 799
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc-cccccchhHHHHHHHHHH--
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN-MSDFTYVENVAHAHVCAA-- 238 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~-~~~~i~v~Dva~ai~~al-- 238 (586)
.+|..+|.+++. .|++++++||+.++++.... .. .....+.. ...+++.+|+|++++.++
T Consensus 133 ~~K~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~------------~~-~~~~~~~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 133 QGERQARNVLRE----SNLNYTILRLTWLYNDPEXT------------DY-ELIPEGAQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHHHHHHH----SCSEEEEEEECEEECCTTCC------------CC-EEECTTSCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh----CCCCEEEEechhhcCCCCCc------------ce-eeccCCccCCCceeeHHHHHHHHHHHHHh
Confidence 999999999987 68999999999999873211 11 11111122 224899999999999988
Q ss_pred HHhhcccccCCCcEEEEeCCC
Q 007866 239 EALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~ 259 (586)
.. .....++.+.++++.
T Consensus 196 ~~----~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 196 AD----ETPFHRTSIGVGEPG 212 (221)
T ss_dssp SC----CGGGTTEEEEEECTT
T ss_pred cC----hhhhhcceeeecCCC
Confidence 51 223567788888653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=194.17 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=146.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--- 84 (586)
+|+|+||||+|+||++++++|+ +| ++|+++ .|.+. .+.+|+.|.+++.+++++
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~--------~r~~~--------------~~~~D~~~~~~~~~~~~~~~~ 58 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITA--------GRHSG--------------DVTVDITNIDSIKKMYEQVGK 58 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEE--------ESSSS--------------SEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEE--------ecCcc--------------ceeeecCCHHHHHHHHHHhCC
Confidence 4689999999999999999999 99 599994 44321 468999999999988875
Q ss_pred CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCCCcccCC
Q 007866 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCW 154 (586)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~ 154 (586)
+|+|||+||... ...+++..+++|+.++.++++++... + +++|++||...+. +.
T Consensus 59 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~---------------~~ 122 (202)
T 3d7l_A 59 VDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMED---------------PI 122 (202)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTS---------------CC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcC---------------CC
Confidence 899999999652 12334677899999999999999876 4 6999999987652 12
Q ss_pred CCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 155 KFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 155 ~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
.+...|+.+|...|.+.+.++.+ .|++++++||+.++++... . +++...+++++++|+|+
T Consensus 123 ~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~---------~---------~~~~~~~~~~~~~dva~ 184 (202)
T 3d7l_A 123 VQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK---------L---------EPFFEGFLPVPAAKVAR 184 (202)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH---------H---------GGGSTTCCCBCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh---------h---------hhhccccCCCCHHHHHH
Confidence 44578999999999999998765 4899999999999987420 0 12233567899999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEe
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFIT 256 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~ 256 (586)
+++.+++ ....|++||+.
T Consensus 185 ~~~~~~~------~~~~G~~~~vd 202 (202)
T 3d7l_A 185 AFEKSVF------GAQTGESYQVY 202 (202)
T ss_dssp HHHHHHH------SCCCSCEEEEC
T ss_pred HHHHhhh------ccccCceEecC
Confidence 9988775 45678888873
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=199.80 Aligned_cols=217 Identities=16% Similarity=0.106 Sum_probs=160.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++.. ++. ..... ..+.+++.+|+.|.+++.+++++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~ 73 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTN--------SDLVSLAKE--CPGIEPVCVDLGDWDATEKALGG 73 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH--STTCEEEECCTTCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHh--ccCCCcEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999 5999955432 110 00000 12567889999999999999873
Q ss_pred ---CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCCCCCC
Q 007866 85 ---ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 85 ---~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+|+|||+||... ...+++..+++|+.++.++++++... + .+++|++||...|..
T Consensus 74 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 142 (244)
T 1cyd_A 74 IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT----------- 142 (244)
T ss_dssp CCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC-----------
Confidence 799999999752 22346778999999999999887654 5 679999999988732
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
..+...|+.||...|.+++.++.+ .|++++++||+.++|+... ...+.+...+.++ .+.+++
T Consensus 143 ----~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~~~~ 209 (244)
T 1cyd_A 143 ----FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKER---------HPLRKF 209 (244)
T ss_dssp ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHH---------STTSSC
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhc---------CCccCC
Confidence 134568999999999999887654 5899999999999987432 1112232333222 234689
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+|++|+|++++.+++. ......|+.+++.++..
T Consensus 210 ~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 210 AEVEDVVNSILFLLSD---RSASTSGGGILVDAGYL 242 (244)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSSEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCc---hhhcccCCEEEECCCcc
Confidence 9999999999988862 12345688999988753
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=199.02 Aligned_cols=222 Identities=11% Similarity=0.081 Sum_probs=164.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++.. +.. .....+ ...++.++.+|+.|++++.+++
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 79 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINA--------DAANHVVDEIQQLGGQAFACRCDITSEQELSALA 79 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 5999955432 100 000000 1246788999999999998887
Q ss_pred c-------CCCEEEEcccCCCC------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 83 E-------GASTVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|+|||+||.... ..+++..+++|+.++.++++++. +.+.+++|++||...+.
T Consensus 80 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 151 (255)
T 1fmc_A 80 DFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-------- 151 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC--------
Confidence 6 79999999997622 23467889999999999998875 45778999999998763
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+..+|+.+|...|.+.+.++.+ .|++++++||+.++++.... ..+.+......+. +.
T Consensus 152 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~ 215 (255)
T 1fmc_A 152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT---------PI 215 (255)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTC---------SS
T ss_pred -------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcC---------Cc
Confidence 1235678999999999998887643 58999999999999874322 2333333333332 22
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~ 263 (586)
..+.+++|+|++++.++.. ......|++|+++++..+|+
T Consensus 216 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 216 RRLGQPQDIANAALFLCSP---AASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCCCC
T ss_pred ccCCCHHHHHHHHHHHhCC---ccccCCCcEEEECCceeccC
Confidence 4578999999999988751 11235688999999887764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=195.53 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=162.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||++++++|+++| ++|++.++. .... ...++.++.+|+.|++++.++++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 91 (260)
T 3un1_A 27 QQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSRS--------IKPS------ADPDIHTVAGDISKPETADRIVREGI 91 (260)
T ss_dssp TCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESS--------CCCC------SSTTEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCC--------hhhc------ccCceEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599995543 2211 12368999999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 92 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 162 (260)
T 3un1_A 92 ERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM--------- 162 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB---------
T ss_pred HHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC---------
Confidence 7999999999762 23456788999999999999987 56677899999998775211
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+..+...|+.||...|.+.+.++.+ .|+++.+++||.++++...... ...... ..+...+.
T Consensus 163 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~~~~~~---------~~p~~r~~ 226 (260)
T 3un1_A 163 ----VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAET---HSTLAG---------LHPVGRMG 226 (260)
T ss_dssp ----TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGG---HHHHHT---------TSTTSSCB
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHH---HHHHhc---------cCCCCCCc
Confidence 2345678999999999998877654 4899999999999998643211 111111 22345678
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+++|+|++++.+.+ .....|+++++.+|...+
T Consensus 227 ~~~dva~av~~L~~-----~~~itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 227 EIRDVVDAVLYLEH-----AGFITGEILHVDGGQNAG 258 (260)
T ss_dssp CHHHHHHHHHHHHH-----CTTCCSCEEEESTTGGGC
T ss_pred CHHHHHHHHHHhcc-----cCCCCCcEEEECCCeecc
Confidence 89999999998744 456789999999986543
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-22 Score=193.63 Aligned_cols=209 Identities=17% Similarity=0.074 Sum_probs=160.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+|+|+||||+|+||++++++|+++| ++|+++++ .+. ..++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r--------~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 63 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDL--------RRE---------GEDLIYVEGDVTREEDVRRAVARAQE 63 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEES--------SCC---------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcc--------Ccc---------ccceEEEeCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999999 59999544 322 1235889999999999998887
Q ss_pred --CCCEEEEcccCCCCC-------C----ChhHHHHHHHHHHHHHHHHHHhCC----------CCEEEEecCccccccCC
Q 007866 84 --GASTVFYVDATDLNT-------D----DFYNCYMIIVQGAKNVVTACRECK----------VRRLVYNSTADVVFDGS 140 (586)
Q Consensus 84 --~~D~Vih~aa~~~~~-------~----~~~~~~~~Nv~gt~~lleaa~~~g----------vkr~I~~SS~~vyg~~~ 140 (586)
++|+|||+||..... . +++..+++|+.++.++++++.... .+++|++||...+..
T Consensus 64 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-- 141 (242)
T 1uay_A 64 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-- 141 (242)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--
T ss_pred hCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--
Confidence 789999999976211 1 678899999999999999887541 129999999988742
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+......+.+.
T Consensus 142 -------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----- 203 (242)
T 1uay_A 142 -------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPF----- 203 (242)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCS-----
T ss_pred -------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCC-----
Confidence 234578999999999988776543 48999999999999875433333333333333221
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
...+++++|+|++++.++. .+...|+.|++.++..++
T Consensus 204 ---~~~~~~~~dva~~~~~l~~-----~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 ---PPRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp ---SCSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCCC
T ss_pred ---cccCCCHHHHHHHHHHHhc-----CCCCCCcEEEEcCCeecC
Confidence 0347889999999999887 346779999999887554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=192.48 Aligned_cols=223 Identities=14% Similarity=0.077 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.... .... ...+.. ...++.++.+|+.|.+++.++++
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAM-ATKA--VEDLRM--EGHDVSSVVMDVTNTESVQNAVRSV 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 0000 000000 12468899999999999888775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...++...+++|+.++.++++++.. .+..++|++||...+...
T Consensus 85 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 157 (260)
T 3awd_A 85 HEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN------- 157 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC-------
Confidence 6899999999652 1123477899999999999988764 467899999998765211
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-Cc-HHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QL-VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-~~-~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..|...|+.+|...|.+++.++.+ +|++++++||+.++++... .. .+.+......+. ..
T Consensus 158 ------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 222 (260)
T 3awd_A 158 ------RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGT---------PM 222 (260)
T ss_dssp ------SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTC---------TT
T ss_pred ------CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcC---------Cc
Confidence 2234578999999999999887654 6899999999999998653 11 122333222221 22
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+++++|+|++++.++.. ......|+.|+++++.
T Consensus 223 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 223 GRVGQPDEVASVVQFLASD---AASLMTGAIVNVDAGF 257 (260)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCHHHHHHHHHHHhCc---hhccCCCcEEEECCce
Confidence 4588999999999987752 1234678899998875
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=197.40 Aligned_cols=230 Identities=17% Similarity=0.110 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-----CCCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----LSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-----l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.... +... ...+... ....++.++.+|+.|.+++.+
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 80 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAA-AQET--VRLLGGPGSKEGPPRGNHAAFQADVSEARAARC 80 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHHH--HHTC------------CCEEEECCTTSHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHH-HHHH--HHHHHhcCccccccCcceEEEEecCCCHHHHHH
Confidence 457899999999999999999999999 599996654321 0000 0000000 011468899999999998888
Q ss_pred HhcC-------C-CEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCC
Q 007866 81 VLEG-------A-STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGS 140 (586)
Q Consensus 81 ~l~~-------~-D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~ 140 (586)
++++ + |+|||+||... ...+++..+++|+.|+.++++++... + .+++|++||...+.
T Consensus 81 ~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--- 157 (264)
T 2pd6_A 81 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV--- 157 (264)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH---
T ss_pred HHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc---
Confidence 7764 3 99999999762 23456788999999999999987654 4 56999999986652
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+......+
T Consensus 158 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-------- 217 (264)
T 2pd6_A 158 ------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM-------- 217 (264)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGG--------
T ss_pred ------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHh--------
Confidence 1234578999999999998887654 68999999999999986543222222211111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDF 266 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei 266 (586)
.....+.+++|+|++++.++.. ......|+.+++.++..++...+
T Consensus 218 -~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 -IPMGHLGDPEDVADVVAFLASE---DSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp -CTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC-------
T ss_pred -CCCCCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECCCceeccccC
Confidence 1223578999999999988752 12346789999999876654433
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=195.88 Aligned_cols=237 Identities=10% Similarity=0.049 Sum_probs=157.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC-CCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-DSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~-~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.... +... ...+. ......++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAER-LEET--RQQILAAGVSEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence 457899999999999999999999999 599995543210 0000 00000 00012357889999999999888876
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccc-cccCCC
Q 007866 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADV-VFDGSH 141 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~v-yg~~~~ 141 (586)
++|+|||+||... ...+++..+++|+.|+.++++++... + +++|++||... +.
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~---- 154 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLH---- 154 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSS----
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEeccccccc----
Confidence 7999999999752 23346778999999999999887654 6 79999999876 42
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHH------HHHhcCC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLL------VNLAKPG 209 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~---~~l------~~~~~~g 209 (586)
+..+...|+.||...|.+.+.++.+ +|++++++|||.+.++...... +.. .......
T Consensus 155 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (278)
T 1spx_A 155 -----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC 223 (278)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc
Confidence 1234568999999999998877532 6899999999999987532110 000 1111110
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhccccc-CCCcEEEEeCCCCcCHHHHHHHHHHHc
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS-VAGMAFFITNLEPIKFWDFLSIILEGL 274 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~-~~g~~~ni~~~~~~t~~ei~~~i~~~~ 274 (586)
.+...+.+++|+|++++.++... ... ..|+.+++.++..+++.|+++.+.+.+
T Consensus 224 ---------~p~~~~~~~~dvA~~v~~l~s~~---~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 224 ---------VPAGVMGQPQDIAEVIAFLADRK---TSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ---------CTTSSCBCHHHHHHHHHHHHCHH---HHTTCCSCEEEESTTGGGC------------
T ss_pred ---------CCCcCCCCHHHHHHHHHHHcCcc---ccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 11235789999999999877511 122 578999999999999999999988653
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-21 Score=188.00 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|+++|+... +.. .....+ ..++.++.+|+.|.+++.++++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~----~~~---~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPP----AGE---EPAAEL-GAAVRFRNADVTNEADATAALAFA 75 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------------CEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChH----HHH---HHHHHh-CCceEEEEccCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 59999655431 100 111111 3468899999999999888776
Q ss_pred -----CCCEEEEcccCCCC-----------CCChhHHHHHHHHHHHHHHHHHHhC----------CCCEEEEecCccccc
Q 007866 84 -----GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVF 137 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~lleaa~~~----------gvkr~I~~SS~~vyg 137 (586)
++|++||+||.... ..+++..+++|+.|+.++++++... +..++|++||...+.
T Consensus 76 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tpc_A 76 KQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD 155 (257)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc
Confidence 79999999997621 2356788999999999999988753 456899999998763
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
. ..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++......+........
T Consensus 156 ~---------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~------ 214 (257)
T 3tpc_A 156 G---------------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAA------ 214 (257)
T ss_dssp C---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------C------
T ss_pred C---------------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHh------
Confidence 1 234578999999999988776554 6899999999999987543322222222211
Q ss_pred EcCCCcc-ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 215 IGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 215 ~g~g~~~-~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+. ..+.+.+|+|++++.+++ .+...|+++++.+|..++
T Consensus 215 ---~~p~~~r~~~~~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 215 ---SVPFPPRLGRAEEYAALVKHICE-----NTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ---CSSSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC-
T ss_pred ---cCCCCCCCCCHHHHHHHHHHHcc-----cCCcCCcEEEECCCccCC
Confidence 1222 457889999999998887 356889999999886554
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-22 Score=201.36 Aligned_cols=234 Identities=14% Similarity=0.097 Sum_probs=168.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++.++.+|+.|.+++.++
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 94 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKM--------DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNT 94 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHH
Confidence 456899999999999999999999999 4999955432 110 000000 024688999999999988877
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++ ++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 95 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~---- 170 (302)
T 1w6u_A 95 VSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG---- 170 (302)
T ss_dssp HHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC----
Confidence 75 3699999999652 2335678999999999999887753 34579999999877631
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHH--HHHHHhcCCCceEEEc
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVP--LLVNLAKPGWTKFIIG 216 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-~~~~--~l~~~~~~g~~~~i~g 216 (586)
..+...|+.||...|.+.+.++.+ +|++++++|||.+++++.. ...+ ........+.
T Consensus 171 -----------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------ 233 (302)
T 1w6u_A 171 -----------SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI------ 233 (302)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC------
T ss_pred -----------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC------
Confidence 245678999999999999888654 6899999999999987321 1111 1111222221
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG 275 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g 275 (586)
+...+.+++|+|++++.++.. ......|+.|+++++..+++.|+++.+.+..|
T Consensus 234 ---p~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 234 ---PCGRLGTVEELANLAAFLCSD---YASWINGAVIKFDGGEEVLISGEFNDLRKVTK 286 (302)
T ss_dssp ---TTSSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred ---CcCCCCCHHHHHHHHHHHcCC---cccccCCCEEEECCCeeeccCCccccchhhcc
Confidence 223578899999999887751 12235789999999988888888877766543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=191.76 Aligned_cols=217 Identities=17% Similarity=0.105 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++|+||||+|+||++++++|+++| ++|+++++.. ++. .....+ .+.+++.+|+.|.+++.++++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~ 73 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQ--------ADLDSLVREC--PGIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHS--TTCEEEECCTTCHHHHHHHHTT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHc--CCCCEEEEeCCCHHHHHHHHHH
Confidence 457899999999999999999999999 4999855432 110 000001 246778999999999999886
Q ss_pred --CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|+|||+||... ...+++..+++|+.++.++.+++... + .+++|++||...+.
T Consensus 74 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 141 (244)
T 3d3w_A 74 VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------ 141 (244)
T ss_dssp CCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------
Confidence 4799999999752 12346789999999999998887653 5 67999999998763
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+.+.|+.||+..|.+.+.++.+ .|++++++||+.++++..... .+........ ..+...+
T Consensus 142 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~~ 209 (244)
T 3d3w_A 142 ---AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLN---------RIPLGKF 209 (244)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHH---------TCTTCSC
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHh---------hCCCCCC
Confidence 1234678999999999999887643 589999999999998752210 0111111111 1223578
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++++|+|++++.++.. ......|+.|+++++..
T Consensus 210 ~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 210 AEVEHVVNAILFLLSD---RSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 9999999999988762 11245789999988753
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-22 Score=200.45 Aligned_cols=229 Identities=14% Similarity=0.110 Sum_probs=164.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.|+.... .. .....+ ..++.++.+|+.|++++.++++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----~~---~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIER----AR---QAAAEI-GPAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHH----HH---HHHHHH-CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----HH---HHHHHh-CCCceEEEeeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 599995553210 00 000011 2467899999999999888876
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++++++... + -.++|++||...+.
T Consensus 77 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 147 (259)
T 4e6p_A 77 VEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR--------- 147 (259)
T ss_dssp HHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc---------
Confidence 7999999999752 23456788899999999999987643 2 35899999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc---CCCceEEEcCCCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK---PGWTKFIIGSGEN 220 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~---~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.++++....... +..... .+......+++.+
T Consensus 148 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p 220 (259)
T 4e6p_A 148 ------GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDA-LFARYENRPRGEKKRLVGEAVP 220 (259)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHH-HHHHHHTCCTTHHHHHHHHHST
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhh-hhhhhccCChHHHHHHHhccCC
Confidence 1234578999999999999887643 58999999999999885322111 111111 1121122334456
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
...+.+++|+|++++.++.. ......|++|++.+|..+|
T Consensus 221 ~~r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 221 FGRMGTAEDLTGMAIFLASA---ESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp TSSCBCTHHHHHHHHHTTSG---GGTTCCSCEEEESTTSSCC
T ss_pred CCCCcCHHHHHHHHHHHhCC---ccCCCCCCEEEECcChhcC
Confidence 67899999999998876541 1245679999999987654
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=194.72 Aligned_cols=183 Identities=14% Similarity=-0.010 Sum_probs=144.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc---C
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE---G 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---~ 84 (586)
|+|+||||+|+||++++++|+++ +|+++ .|++++. .....+. . .++.+|+.|++++.++++ +
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~--------~r~~~~~~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~ 66 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLS--------GRRAGALAELAREVG--A-RALPADLADELEAKALLEEAGP 66 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEE--------CSCHHHHHHHHHHHT--C-EECCCCTTSHHHHHHHHHHHCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEE--------ECCHHHHHHHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCC
Confidence 58999999999999999999988 68884 4433210 0000011 1 788999999999999988 8
Q ss_pred CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
+|+|||+||... ...+++..+++|+.++.++++++++.+.+++|++||..+|. +..+.
T Consensus 67 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~---------------~~~~~ 131 (207)
T 2yut_A 67 LDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV---------------QVPGF 131 (207)
T ss_dssp EEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH---------------SSTTB
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc---------------CCCCc
Confidence 999999999752 24467889999999999999999777788999999998873 22456
Q ss_pred ChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHH
Q 007866 158 DLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai 234 (586)
+.|+.+|...|.+++.++.+ +|++++++||+.++++.. .+++.+.+++++++|+|+++
T Consensus 132 ~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~-------------------~~~~~~~~~~~~~~dva~~~ 192 (207)
T 2yut_A 132 AAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW-------------------APLGGPPKGALSPEEAARKV 192 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG-------------------GGGTSCCTTCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc-------------------cccCCCCCCCCCHHHHHHHH
Confidence 78999999999999887654 699999999999998741 01233457899999999999
Q ss_pred HHHHH
Q 007866 235 VCAAE 239 (586)
Q Consensus 235 ~~ale 239 (586)
+.+++
T Consensus 193 ~~~~~ 197 (207)
T 2yut_A 193 LEGLF 197 (207)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98887
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=191.63 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=160.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC---CCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~---~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+. ..++.++.+|+.|.+++.++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~ 75 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQV--------DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAV 75 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 457899999999999999999999999 5999955432 110 0000000 24688899999999998887
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ++|+|||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...+..
T Consensus 76 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 150 (263)
T 3ai3_A 76 VESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP----- 150 (263)
T ss_dssp HHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC-----
Confidence 76 7999999999752 223467889999999999988774 456789999999988732
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-----------HHHHHhcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPG 209 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-----------~l~~~~~~g 209 (586)
..+...|+.||...|.+.+.++.+ +|++++++|||.++++......+ .+......+
T Consensus 151 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T 3ai3_A 151 ----------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE 220 (263)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc
Confidence 134568999999999998887653 68999999999999874221111 111111110
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+.+...+.+++|+|++++.++.. ......|+.|++.++..++
T Consensus 221 --------~~p~~~~~~~~dvA~~~~~l~s~---~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 221 --------HAPIKRFASPEELANFFVFLCSE---RATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp --------HCTTCSCBCHHHHHHHHHHHTST---TCTTCCSCEEEESTTCCCC
T ss_pred --------CCCCCCCcCHHHHHHHHHHHcCc---cccCCCCcEEEECCCcccc
Confidence 02234688999999999877651 1223568999999987654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=191.69 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++.++.+|+.|.+++.++
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSG--------ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKA 75 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHH
Confidence 457899999999999999999999999 5999955432 100 000000 124688899999999999888
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 76 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 150 (248)
T 2pnf_A 76 FEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG----- 150 (248)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC-----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC-----
Confidence 76 7999999999762 12346788999999996666544 4567889999999866531
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++........+....... .+
T Consensus 151 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~ 211 (248)
T 2pnf_A 151 ----------NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQ---------IP 211 (248)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHT---------CT
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhc---------CC
Confidence 123568999999999998877542 58999999999999875432222222222111 12
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+++++|+|++++.++... .....|++|+++++.
T Consensus 212 ~~~~~~~~dva~~~~~l~~~~---~~~~~G~~~~v~gg~ 247 (248)
T 2pnf_A 212 LGRFGSPEEVANVVLFLCSEL---ASYITGEVIHVNGGM 247 (248)
T ss_dssp TSSCBCHHHHHHHHHHHHSGG---GTTCCSCEEEESTTC
T ss_pred CCCccCHHHHHHHHHHHhCch---hhcCCCcEEEeCCCc
Confidence 245889999999999887521 234568999998863
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=184.54 Aligned_cols=221 Identities=14% Similarity=0.119 Sum_probs=163.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++|+++||||+|+||++++++|+++| ++|.+.+............ .+.. ...++..+.+|+.|.+++.++++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 77 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKEKAEAVVE--EIKA--KGVDSFAIQANVADADEVKAMIKEVV 77 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHHH--TTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH--HHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 5888854432100000000 0000 13467889999999999888776
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+..
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 147 (246)
T 3osu_A 78 SQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVG---------- 147 (246)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC----------
Confidence 6899999999762 23346779999999999999988 5567779999999877631
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..+...|+.||...|.+.+.++. .+|+++.+++||.+.++......+.+......+.+ ...+.
T Consensus 148 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~~ 213 (246)
T 3osu_A 148 -----NPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP---------LARFG 213 (246)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCT---------TCSCB
T ss_pred -----CCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCC---------CCCCc
Confidence 23467899999999988887764 46899999999999998766555555555544432 34567
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+|+|++++.++.. ......|++|++.+|.
T Consensus 214 ~~~dva~~v~~l~s~---~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 214 QDTDIANTVAFLASD---KAKYITGQTIHVNGGM 244 (246)
T ss_dssp CHHHHHHHHHHHTSG---GGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 899999999877651 1234669999998874
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=185.61 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=157.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+|+++||||+|+||++++++|+++| ++|+++++.... +... ...+.. ....++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAET-LEET--ARTHWH-AYADKVLRVRADVADEGDVNAAIAATME 76 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHST-TTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHH-hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999 599995543210 0000 000000 012468899999999999888876
Q ss_pred ---CCCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ---GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ---~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||.... ..+++..+++|+.++.++.+++ ++.+.+++|++||...+..
T Consensus 77 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 148 (250)
T 2cfc_A 77 QFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVA-------- 148 (250)
T ss_dssp HHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC--------
Confidence 79999999997521 2346788999999997776655 3457889999999987631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++..... .+.+......+. ..
T Consensus 149 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~---------~~ 212 (250)
T 2cfc_A 149 -------FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARI---------PQ 212 (250)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTC---------TT
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcC---------CC
Confidence 234578999999999999887643 489999999999999864321 122333332222 22
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGE---DATYVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHST---TCTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCc---hhhcccCCEEEECCce
Confidence 3578999999999987751 1224568999998864
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=188.35 Aligned_cols=220 Identities=12% Similarity=0.054 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++.. +++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKA-------PANIDETIASMRADGGDAAFFAADLATSEACQQLV 76 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC-------CTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCc-------hhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999 4999955431 1110 000000 1246889999999999998888
Q ss_pred c-------CCCEEEEcccC-CC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC--C---CEEEEecCcccccc
Q 007866 83 E-------GASTVFYVDAT-DL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK--V---RRLVYNSTADVVFD 138 (586)
Q Consensus 83 ~-------~~D~Vih~aa~-~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--v---kr~I~~SS~~vyg~ 138 (586)
+ ++|+|||+||. .. ...+++..+++|+.++.++++++.. .+ . .++|++||...+..
T Consensus 77 ~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 156 (258)
T 3afn_B 77 DEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG 156 (258)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC
T ss_pred HHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC
Confidence 6 79999999997 31 1223677889999999999887643 22 2 69999999877631
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.||...|.+.+.++.+ .|++++++||+.++++......+.+......+.
T Consensus 157 --------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----- 217 (258)
T 3afn_B 157 --------------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGI----- 217 (258)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTC-----
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccC-----
Confidence 1134578999999999998877543 489999999999999865443344444443332
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccc-cCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMV-SVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~-~~~g~~~ni~~~~ 259 (586)
+...+++++|+|++++.++... .. ...|+.|+++++.
T Consensus 218 ----~~~~~~~~~dva~~~~~l~~~~---~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 218 ----PMGRFGTAEEMAPAFLFFASHL---ASGYITGQVLDINGGQ 255 (258)
T ss_dssp ----TTCSCBCGGGTHHHHHHHHCHH---HHTTCCSEEEEESTTS
T ss_pred ----CCCcCCCHHHHHHHHHHHhCcc---hhccccCCEEeECCCc
Confidence 2346899999999999887521 12 3568999998875
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=184.12 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=148.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+|+||||+|+||++++++|+++| ++|++++ .|.+... .....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNG-------SPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVK 75 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEE-------CTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEc-------CcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5888842 2222100 000000 13468899999999999888776
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+.+++|++||...+.
T Consensus 76 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 147 (247)
T 2hq1_A 76 TAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII-------- 147 (247)
T ss_dssp HHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc--------
Confidence 7999999999752 3445788999999999888887654 5778999999985431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+..+|+.+|...|.+.+.++.+ .|+++++++|+.+.++......+........+ .+..
T Consensus 148 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~~ 211 (247)
T 2hq1_A 148 -------GNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNN---------IPLK 211 (247)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTT---------STTS
T ss_pred -------CCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhh---------CCCC
Confidence 1124568999999999998877543 48999999999997653222212222222222 2234
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+++++|+|++++.++.. ......|+.|+++++.
T Consensus 212 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 212 RFGTPEEVANVVGFLASD---DSNYITGQVINIDGGL 245 (247)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCc---ccccccCcEEEeCCCc
Confidence 688999999999877751 1123568899998875
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-21 Score=190.86 Aligned_cols=219 Identities=14% Similarity=0.128 Sum_probs=157.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++. .+... .....+ ...++.++.+|+.|.+++.+++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 90 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGS-------SSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALF 90 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCC-------chHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 346899999999999999999999999 589885541 11100 000000 1246788999999999998887
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++... + +++|++||...+..
T Consensus 91 ~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~------- 162 (274)
T 1ja9_A 91 DKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMT------- 162 (274)
T ss_dssp HHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCC-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccC-------
Confidence 6 7899999999752 22345788999999999999988765 5 69999999988621
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC------------CcH-HHHHHHhcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------------QLV-PLLVNLAKPG 209 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~------------~~~-~~l~~~~~~g 209 (586)
+..+...|+.+|...|.+.+.++.+ .|++++++|||.++++... ... +......
T Consensus 163 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 232 (274)
T 1ja9_A 163 -------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGL--- 232 (274)
T ss_dssp -------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHH---
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHH---
Confidence 1134568999999999999887643 4899999999999876321 000 1111111
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.++.+...+++++|+|++++.++.. ......|++|+++++.
T Consensus 233 ------~~~~~~~~~~~~~dva~~i~~l~~~---~~~~~~G~~~~v~gG~ 273 (274)
T 1ja9_A 233 ------ANMNPLKRIGYPADIGRAVSALCQE---ESEWINGQVIKLTGGG 273 (274)
T ss_dssp ------HHTSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred ------HhcCCCCCccCHHHHHHHHHHHhCc---ccccccCcEEEecCCc
Confidence 1233456789999999999988762 1123478999998863
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-21 Score=189.58 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=144.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l- 82 (586)
.+|+|+||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNE--------YELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQ 83 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5999955432 100 000000 1236888999999999888777
Q ss_pred -------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 83 -------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 -------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
.++|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 84 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------ 157 (266)
T 1xq1_A 84 TVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS------ 157 (266)
T ss_dssp HHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------
T ss_pred HHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccC------
Confidence 46899999999752 23346778999999999999988 4567889999999987631
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++...... +.+...... ...
T Consensus 158 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~~~ 219 (266)
T 1xq1_A 158 ---------ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVIS---------RKP 219 (266)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHh---------cCC
Confidence 234578999999999999887643 4899999999999998643221 111111111 112
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+++++|+|++++.++.. ......|+.+++.++..
T Consensus 220 ~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 220 LGRFGEPEEVSSLVAFLCMP---AASYITGQTICVDGGLT 256 (266)
T ss_dssp ----CCGGGGHHHHHHHTSG---GGTTCCSCEEECCCCEE
T ss_pred CCCCcCHHHHHHHHHHHcCc---cccCccCcEEEEcCCcc
Confidence 23578999999999877651 12345689999998753
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=185.80 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=162.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.|+. .++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 78 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAG-ARVVLADLP--------ETDLAGAAASV-GRGAVHHVVDLTNEVSVRALIDF 78 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECT--------TSCHHHHHHHH-CTTCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCC--------HHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 589985543 2210 000011 3467899999999999888776
Q ss_pred ------CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 79 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------- 151 (271)
T 3tzq_B 79 TIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA------- 151 (271)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC-------
Confidence 6899999999762 12345788999999999999988 667778999999998762
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.++++... .............. .
T Consensus 152 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~ 214 (271)
T 3tzq_B 152 --------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHH---------L 214 (271)
T ss_dssp --------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTS---------T
T ss_pred --------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcC---------C
Confidence 2245678999999999998887654 6899999999999998654 22223333333322 2
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 215 ~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 215 AGRIGEPHEIAELVCFLASD---RAAFITGQVIAADSGL 250 (271)
T ss_dssp TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCc---ccCCcCCCEEEECCCc
Confidence 23467899999999987751 1245679999999873
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=189.57 Aligned_cols=219 Identities=13% Similarity=0.034 Sum_probs=155.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCe-EEEEccCCCHHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRA-EYHQVDVRDISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~-~~~~~Dl~d~~~l~~~l- 82 (586)
+.+++++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ..++ .++.+|+.|.+++.+++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 78 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG-ARLILIDREA--------AALDRAAQEL-GAAVAARIVADVTDAEAMTAAAA 78 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-GGGEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-cccceeEEEEecCCHHHHHHHHH
Confidence 346899999999999999999999999 5999955432 210 000001 1245 78999999999988776
Q ss_pred -----cCCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 83 -----EGASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 -----~~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.++|+|||+||.... ..+++..+++|+.|+.++.+++ ++.+.+++|++||...+...
T Consensus 79 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 151 (254)
T 2wsb_A 79 EAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN------- 151 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC-------
Confidence 468999999997521 2235678899999977776655 45578899999999876321
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..|.+.|+.+|...|.+.+.++.+ .|++++++||+.++++..... .+.+....... ...
T Consensus 152 ------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~~~ 216 (254)
T 2wsb_A 152 ------RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDM---------TPM 216 (254)
T ss_dssp ------SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHT---------STT
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhc---------CCC
Confidence 2234578999999999998877643 489999999999998742211 01222222221 122
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+++++|+|++++.++.. ......|+.+++.++.
T Consensus 217 ~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 217 GRCGEPSEIAAAALFLASP---AASYVTGAILAVDGGY 251 (254)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCc---ccccccCCEEEECCCE
Confidence 4588999999999987751 1234678999998863
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=186.69 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=157.5
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|++..+.+|+|+||||+|+||++++++|+++| ++|+++++ .+++ ..++.++.+|+.|.+++.+
T Consensus 1 m~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~--------~~~~~~~~~Dl~~~~~v~~ 63 (264)
T 2dtx_A 1 MGFSDLRDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSI--------HDPG--------EAKYDHIECDVTNPDQVKA 63 (264)
T ss_dssp -CCGGGTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES--------SCCC--------SCSSEEEECCTTCHHHHHH
T ss_pred CCccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEec--------Cccc--------CCceEEEEecCCCHHHHHH
Confidence 55555677999999999999999999999999 59998544 3321 2357889999999999887
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ ++|+|||+||... ...+++..+++|+.|+.++++++.. .+.+++|++||...+.
T Consensus 64 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----- 138 (264)
T 2dtx_A 64 SIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----- 138 (264)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc-----
Confidence 775 6999999999752 2335778999999999988887754 4667999999998763
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhc--CC----CceEE
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAK--PG----WTKFI 214 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~g--l~~~ilRp~~v~G~~~~~~~~~l~~~~~--~g----~~~~i 214 (586)
+..+...|+.||...|.+.+.++.+.+ +++++++||.+.++.. ..+..... .. .....
T Consensus 139 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~----~~~~~~~~~~~~~~~~~~~~~ 204 (264)
T 2dtx_A 139 ----------ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLV----RKAAELEVGSDPMRIEKKISE 204 (264)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHH----HHHHHHHHCSCHHHHHHHHHH
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcch----hhhhhcccccCchhhHHHHHH
Confidence 123457899999999999887764322 9999999999976521 11100000 00 00000
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+..+...+++++|+|++++.++.. ......|+.+++.++.
T Consensus 205 ~~~~~p~~~~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 205 WGHEHPMQRIGKPQEVASAVAFLASR---EASFITGTCLYVDGGL 246 (264)
T ss_dssp HHHHSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHhcCCCCCCcCHHHHHHHHHHHhCc---hhcCCCCcEEEECCCc
Confidence 01112234588999999999987751 1234678999998875
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=187.40 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=163.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC--CCCCC---CC--CCCCCeEEEEccCCCHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES--NSLLP---DS--LSSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~--~~~~~---~~--l~~~~~~~~~~Dl~d~~~ 77 (586)
.+.+|+++||||+|+||++++++|+++| ++|.+.|+........... ..... .. -...++.++.+|+.|.++
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 85 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAA 85 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 4567899999999999999999999999 5899966642110000000 00000 00 013468899999999999
Q ss_pred HHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccC
Q 007866 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDG 139 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~ 139 (586)
+.++++ ++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 163 (281)
T 3s55_A 86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS-- 163 (281)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS--
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC--
Confidence 888775 6899999999762 23346788999999999999986 345667999999998762
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCc---
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWT--- 211 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~--- 211 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.++++....... .+.........
T Consensus 164 -------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
T 3s55_A 164 -------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDV 230 (281)
T ss_dssp -------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHH
T ss_pred -------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHH
Confidence 2234578999999999998877653 58999999999999986542110 00000000000
Q ss_pred -eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 212 -KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 212 -~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
......+.....+.+++|+|++++.++.. ......|+++++.+|...+
T Consensus 231 ~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 231 ESVFASLHLQYAPFLKPEEVTRAVLFLVDE---ASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHHCSSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGG
T ss_pred HHHHHhhhccCcCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECCCcccC
Confidence 00001112236789999999999987752 1234679999999986554
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=186.14 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=156.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++. ..+. .....+ ..++.++.+|+.|.+++.++++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 79 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLP--------NSGGEAQAKKL-GNNCVFAPADVTSEKDVQTALAL 79 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECT--------TSSHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC--------cHhHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHH
Confidence 346899999999999999999999999 599985443 2210 000001 2468899999999999988876
Q ss_pred ------CCCEEEEcccCCCC-------------CCChhHHHHHHHHHHHHHHHHHHhC----------CCCEEEEecCcc
Q 007866 84 ------GASTVFYVDATDLN-------------TDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTAD 134 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-------------~~~~~~~~~~Nv~gt~~lleaa~~~----------gvkr~I~~SS~~ 134 (586)
++|+|||+||.... ..+++..+++|+.++.++++++... +..++|++||..
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 159 (265)
T 2o23_A 80 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 159 (265)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred HHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChh
Confidence 79999999997521 2246788999999999999988764 667999999998
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 007866 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (586)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~ 211 (586)
.+.. ..+...|+.+|...|.+.+.++.+ .|+++++++||.+.++................
T Consensus 160 ~~~~---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~-- 222 (265)
T 2o23_A 160 AFEG---------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQ-- 222 (265)
T ss_dssp HHHC---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHT--
T ss_pred hcCC---------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHc--
Confidence 7631 234578999999998888776543 58999999999998775322111111111110
Q ss_pred eEEEcCCCcc-ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 212 KFIIGSGENM-SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 212 ~~i~g~g~~~-~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
... ..+++.+|+|++++.+++ .+...|+.+++.++..+
T Consensus 223 -------~~~~~~~~~~~dva~~~~~l~~-----~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 223 -------VPFPSRLGDPAEYAHLVQAIIE-----NPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp -------CSSSCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCCC
T ss_pred -------CCCcCCCCCHHHHHHHHHHHhh-----cCccCceEEEECCCEec
Confidence 111 347789999999998886 46678999999887644
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-21 Score=188.23 Aligned_cols=217 Identities=12% Similarity=0.091 Sum_probs=151.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEE-EEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEY-HQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~-~~~Dl~d~~~l~~~l~ 83 (586)
||+|+||||+|+||++++++|+++| ++|++++ .|++++. .....+ ...++.. +.+|+.|.+++.++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHY-------GQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVH 72 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEE-------SSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEc-------CCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHH
Confidence 4789999999999999999999999 4888841 3322110 000000 1234566 8999999998887754
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHH----HHHHHHhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~----lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.+ +++.+++.+.+++|++||...+..
T Consensus 73 ~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 145 (245)
T 2ph3_A 73 QAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG------- 145 (245)
T ss_dssp HHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC-------
Confidence 7999999999752 233567889999999555 455555668889999999876531
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+........+. ...
T Consensus 146 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~ 208 (245)
T 2ph3_A 146 --------NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQI---------PAG 208 (245)
T ss_dssp --------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTC---------TTC
T ss_pred --------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcC---------CCC
Confidence 123568999999998888876543 489999999999998743222222222222211 124
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+++++|+|++++.++.. ......|+.|+++++.
T Consensus 209 ~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 209 RFGRPEEVAEAVAFLVSE---KAGYITGQTLCVDGGL 242 (245)
T ss_dssp SCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCc---ccccccCCEEEECCCC
Confidence 578999999999987752 1123568999998864
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=187.86 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++|+.... + . .....+. .++.++.+|+.|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~---~---~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~~ 80 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMA-A---Q---AVVAGLE-NGGFAVEVDVTKRASVDAAMQKA 80 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-H---H---HHHHTCT-TCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-H---H---HHHHHHh-cCCeEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599995553210 0 0 0000111 257889999999999888876
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+ ..++|++||...+..
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 152 (263)
T 3ak4_A 81 IDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG-------- 152 (263)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC--------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC--------
Confidence 7999999999752 1234678899999999999887754 35 679999999877521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCCCce
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWTK 212 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-----------~~l~~~~~~g~~~ 212 (586)
..+...|+.||...|.+.+.++.+ +|++++++||+.++++...... +.......
T Consensus 153 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----- 220 (263)
T 3ak4_A 153 -------APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYV----- 220 (263)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHH-----
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHH-----
Confidence 134568999999999988877543 5899999999999886421111 11111111
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+...+++++|+|++++.++.. ......|+.|++.++..
T Consensus 221 ----~~~p~~~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 221 ----SLTPLGRIEEPEDVADVVVFLASD---AARFMTGQGINVTGGVR 261 (263)
T ss_dssp ----HTCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSS
T ss_pred ----hcCCCCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECcCEe
Confidence 112334688999999999988751 12346789999998754
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=184.75 Aligned_cols=218 Identities=13% Similarity=0.092 Sum_probs=155.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++|+||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNE--------EKLKSLGNAL-KDNYTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CSSEEEEECCTTSHHHHHHHHHT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHh-ccCccEEEcCCCCHHHHHHHHHh
Confidence 467899999999999999999999999 5899955432 110 000011 2367889999999999998886
Q ss_pred --CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|+|||+||... ...+++..+++|+.++.++.+++. +.+..++|++||...+.
T Consensus 82 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 148 (249)
T 3f9i_A 82 TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA------------- 148 (249)
T ss_dssp CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC---------------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc-------------
Confidence 5899999999752 345688999999999999988774 34567999999998763
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+..+...|+.||+..|.+.+.++.+ .|+++.+++||.+.++......+........ +.+...+.++
T Consensus 149 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 217 (249)
T 3f9i_A 149 --GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQ---------KIPLGTYGIP 217 (249)
T ss_dssp --CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHH---------HCTTCSCBCH
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHh---------cCCCCCCcCH
Confidence 1234578999999999888877543 5899999999999987654433333332222 1234568889
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+|+|++++.++.. ......|+.+++.+|..
T Consensus 218 ~dva~~~~~l~s~---~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 218 EDVAYAVAFLASN---NASYITGQTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHSG---GGTTCCSCEEEESTTSS
T ss_pred HHHHHHHHHHcCC---ccCCccCcEEEECCCEe
Confidence 9999999987752 12346799999998753
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=185.96 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=155.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 74 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILD--------EEGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDT 74 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-hcCceEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 4999855432 110 000011 1247889999999999988886
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++.++ +++.+.+++|++||...+..
T Consensus 75 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 146 (260)
T 1nff_A 75 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG-------- 146 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC--------
Confidence 7999999999752 1234678899999999665554 45567789999999987631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.||...|.+.+.++.+ +|++++++|||.++++... . . ... .. ......
T Consensus 147 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~-~-------~~~-~~----~~~~~~ 205 (260)
T 1nff_A 147 -------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-W-V-------PED-IF----QTALGR 205 (260)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-T-S-------CTT-CS----CCSSSS
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-c-c-------hhh-HH----hCccCC
Confidence 134568999999999998877643 6899999999999987532 1 0 001 00 122345
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+.+.+|+|++++.++.. ......|+.|++.++..
T Consensus 206 ~~~~~dvA~~v~~l~s~---~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 206 AAEPVEVSNLVVYLASD---ESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhCc---cccCCcCCEEEECCCee
Confidence 78999999999987752 12345689999998754
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=182.70 Aligned_cols=218 Identities=15% Similarity=0.056 Sum_probs=155.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+|+|+||||+|+||++++++|+++|+ +|++.+ .|++... .....+ ...++.++.+|+.|.+++.++++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNY-------ARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKT 72 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE-------SSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999999999994 888731 2222100 000000 12357889999999999988876
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 144 (244)
T 1edo_A 73 AIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG-------- 144 (244)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------
T ss_pred HHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCC--------
Confidence 6899999999762 2234677899999999999988865 36789999999876531
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+.+........ ....
T Consensus 145 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~ 208 (244)
T 1edo_A 145 -------NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI---------PLGR 208 (244)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC---------TTCS
T ss_pred -------CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC---------CCCC
Confidence 134568999999998888776543 589999999999998743222222222222221 2245
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+++++|+|++++.++... ......|+.|+++++.
T Consensus 209 ~~~~~dva~~~~~l~~~~--~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 209 TGQPENVAGLVEFLALSP--AASYITGQAFTIDGGI 242 (244)
T ss_dssp CBCHHHHHHHHHHHHHCS--GGGGCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCCC--ccCCcCCCEEEeCCCc
Confidence 789999999999887411 1234568999998874
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=185.16 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.. ++......+. . .++.+|+.|.+++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRP--------EGKEVAEAIG--G-AFFQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------THHHHHHHHT--C-EEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCh--------hHHHHHHHhh--C-CEEEeeCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 2100101111 3 788999999988887765
Q ss_pred -----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||.... ..+++..+++|+.|+.++++++.. .+.+++|++||...+.
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------- 141 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------
Confidence 68999999997521 224578899999999999887753 5678999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH-hcCCCceEEEcCCCcccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-AKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~-~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.||...|.+.+.++.+ .|+++.+++||.+.++. ...+... ...........+..+...
T Consensus 142 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (256)
T 2d1y_A 142 -----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA----VLEAIALSPDPERTRRDWEDLHALRR 212 (256)
T ss_dssp -----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----HHHHHC--------CHHHHTTSTTSS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch----hhhccccccCCHHHHHHHHhcCCCCC
Confidence 1134568999999999998877543 58999999999997642 1111000 001110011122334457
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCH
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~ 263 (586)
+++++|+|++++.++.. ......|+.+++.++...++
T Consensus 213 ~~~~~dvA~~~~~l~s~---~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASE---KASFITGAILPVDGGMTASF 249 (256)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGBC
T ss_pred CcCHHHHHHHHHHHhCc---hhcCCCCCEEEECCCccccc
Confidence 89999999999988752 12246789999999875543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=183.56 Aligned_cols=224 Identities=13% Similarity=0.181 Sum_probs=161.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
++++++||||+|+||++++++|+++| ++|++.+........ ...+.. ...++.++.+|+.|.+++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 78 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTTAME------TMKETYKDVEERLQFVQADVTKKEDLHKIVEE 78 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHTGGGGGGEEEEECCTTSHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChHHHH------HHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 56899999999999999999999999 588885433210000 000000 12468999999999999888775
Q ss_pred ------CCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||.. ....+++..+++|+.|+.++++++ ++.+..++|++||.+.++..
T Consensus 79 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~----- 153 (264)
T 3i4f_A 79 AMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP----- 153 (264)
T ss_dssp HHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC-----
T ss_pred HHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC-----
Confidence 789999999942 123346788999999999999988 56677899999998664211
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.++++......+......... .+.
T Consensus 154 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~ 216 (264)
T 3i4f_A 154 --------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEARQLKEHN---------TPI 216 (264)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHHHHC----------------
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHHHHHHhhc---------CCC
Confidence 2245678999999999998877654 68999999999999987666555444333222 223
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+.+.+|+|++++.++.. ......|+++++.+|....
T Consensus 217 ~r~~~~~dva~~v~~l~s~---~~~~itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCED---DSDMITGTIIEVTGAVDVI 254 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESCSCCCC
T ss_pred CCCcCHHHHHHHHHHHcCc---ccCCCCCcEEEEcCceeec
Confidence 4577899999999987752 1234679999999876433
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-21 Score=191.92 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=172.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||+|+||++++++|+++| ++|++.|+.... +... ...+... ....++.++.+|+.|.+++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDK-LAGA--VQELEALGANGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599996554311 0000 0000000 011267889999999998887775
Q ss_pred ------CCCEEEEcccCC--------CCCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||.. ....+++..+++|+.|+.++++++... +-.++|++||...+.
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 156 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN-------- 156 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS--------
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC--------
Confidence 579999999973 123346788999999999999987653 445999999998873
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++..... .+......... .+
T Consensus 157 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~p 220 (281)
T 3svt_A 157 -------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMC---------TP 220 (281)
T ss_dssp -------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHH---------CS
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhc---------CC
Confidence 2234678999999999998877543 579999999999988743211 11112222111 22
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC-HHHHHHHHHHHcCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK-FWDFLSIILEGLGYQR 278 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t-~~ei~~~i~~~~g~~~ 278 (586)
...+.+++|+|++++.++.. ......|+++++.++..++ ..|+++.+.+.+|.+.
T Consensus 221 ~~r~~~~~dva~~~~~l~s~---~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 221 LPRQGEVEDVANMAMFLLSD---AASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp SSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred CCCCCCHHHHHHHHHHHhCc---ccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 34567899999999987751 1234579999999988776 7788888888887653
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=185.13 Aligned_cols=226 Identities=16% Similarity=0.156 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+|+|+||||+|+||++++++|+++| ++|+++++. ..+.. ....+ ...++.++.+|+.|.+++.++
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~ 82 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRS--------AADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKT 82 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESS--------CTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCc--------chhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHH
Confidence 346799999999999999999999999 599995542 21100 00000 124688999999999988877
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~ 142 (586)
++ ++|+|||+||... ...+++..+++|+.++.++++++... + .+++|++||...+.....
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~- 161 (265)
T 1h5q_A 83 IQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS- 161 (265)
T ss_dssp HHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc-
Confidence 65 3899999999752 22346778999999999999987643 3 479999999987632111
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.. +..+...|+.+|...|.+.+.++.+ .|++++++||+.++++......+......... .
T Consensus 162 -----~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~ 225 (265)
T 1h5q_A 162 -----SLN--GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASN---------I 225 (265)
T ss_dssp -----ETT--EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHT---------C
T ss_pred -----ccc--ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhc---------C
Confidence 001 2345778999999999999887643 58999999999999875433223222222211 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
....+++++|+|++++.++.. ......|+.|++.++..
T Consensus 226 ~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 226 PLNRFAQPEEMTGQAILLLSD---HATYMTGGEYFIDGGQL 263 (265)
T ss_dssp TTSSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEECTTGG
T ss_pred cccCCCCHHHHHHHHHhhccC---chhcCcCcEEEecCCEe
Confidence 223578999999999988751 12346789999998753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=183.90 Aligned_cols=220 Identities=12% Similarity=0.089 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.. +.. .....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHS--------DVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHhhccCceEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 100 000000 11468999999999998888775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCC-CEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKV-RRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gv-kr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... ...+++..+++|+.++.++.+++ ++.+. +++|++||...+..
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------ 148 (251)
T 1zk4_A 75 ATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG------ 148 (251)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC------
Confidence 4899999999752 12345778999999887766554 45676 79999999987631
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
..+...|+.+|...|.+.+.++. ..|++++++||+.++++.............. ....
T Consensus 149 ---------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~--------~~~~ 211 (251)
T 1zk4_A 149 ---------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQ--------RTKT 211 (251)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTS--------TTTC
T ss_pred ---------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHH--------hhcC
Confidence 13457899999999999887653 4689999999999998743221111111101 1112
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
....+++.+|+|++++.++.. ......|+.+++.++..
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 212 PMGHIGEPNDIAYICVYLASN---ESKFATGSEFVVDGGYT 249 (251)
T ss_dssp TTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHcCc---ccccccCcEEEECCCcc
Confidence 234588999999999988751 11235689999998753
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=186.04 Aligned_cols=215 Identities=16% Similarity=0.075 Sum_probs=153.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+. .++ ....+...++.++.+|+.|.+++.++++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~--------~~~--~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRT--------EHA--SVTELRQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESS--------CCH--HHHHHHHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------hHH--HHHHHHhcCCeEEECCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 589985543 221 0111112247899999999998887775
Q ss_pred -----CCCEEEEcccCCCC------CCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~------~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||.... ..+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 162 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK----------- 162 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-----------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-----------
Confidence 58999999997621 123457899999999999987743 4667999999998763
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
+..+...|+.||+..|.+.+.++.+ .++++.+++||.+.++... .......... .....-+..
T Consensus 163 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~--~~~~~~~~~~---------~~p~~r~~~ 227 (260)
T 3gem_A 163 ----GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKD--DAAYRANALA---------KSALGIEPG 227 (260)
T ss_dssp ----CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--------------------------CCSCCCCC
T ss_pred ----CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCC--CHHHHHHHHh---------cCCCCCCCC
Confidence 1234578999999999988877543 2599999999999876422 1111111111 112234566
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
++|+|++++.+++ .+...|+++++.+|..++
T Consensus 228 ~edva~~v~~L~~-----~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 228 AEVIYQSLRYLLD-----STYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp THHHHHHHHHHHH-----CSSCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHHHhh-----CCCCCCCEEEECCCcccC
Confidence 8999999998886 467889999999987654
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=178.21 Aligned_cols=219 Identities=13% Similarity=0.049 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++. ++.. ..++..+.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~--------~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~ 68 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQA--------FTQE-------QYPFATEVMDVADAAQVAQVCQRL 68 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------CCSS-------CCSSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCc--------hhhh-------cCCceEEEcCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599995443 2210 1137889999999999888875
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++ ++.+.+++|++||...+.
T Consensus 69 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------- 138 (250)
T 2fwm_X 69 LAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT---------- 138 (250)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------
Confidence 6899999999752 22357789999999999999988 455678999999998762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-H-HHHH-HhcCCCceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-P-LLVN-LAKPGWTKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-~-~l~~-~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||...|.+.+.++.+ +|++++++||+.++++...... + .... ...... .......+.
T Consensus 139 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~ 211 (250)
T 2fwm_X 139 -----PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQFKLGIPL 211 (250)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcccccCCC
Confidence 1234578999999999998877543 5899999999999987533211 0 0000 000000 000001122
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 212 ~~~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 212 GKIARPQEIANTILFLASD---LASHITLQDIVVDGGST 247 (250)
T ss_dssp ----CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCcc
Confidence 3478899999999987751 12346799999988754
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=186.99 Aligned_cols=232 Identities=14% Similarity=0.169 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+++|+++||||+|+||++++++|+++| ++|++.|+.....+... ...+ ......++.++.+|+.|.+++.++++
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~--~~~~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIRTV--TDEV-AGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHHHH--HHHH-HTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHH--HHHH-hhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 59998554211000000 0000 00113568899999999999888775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 168 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV---------- 168 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc----------
Confidence 6899999999862 23456788999999999999987 455667999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHh--cCCC-ceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA--KPGW-TKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~--~~g~-~~~i~g~g~~~ 221 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++......+...... .... ......++.+.
T Consensus 169 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (281)
T 3v2h_A 169 -----ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPT 243 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCC
Confidence 1234568999999999998877543 58999999999999875433222111000 0000 01123445667
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 244 ~r~~~~edvA~~v~~L~s~---~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 244 KKFITVEQVASLALYLAGD---DAAQITGTHVSMDGGW 278 (281)
T ss_dssp CSCBCHHHHHHHHHHHHSS---GGGGCCSCEEEESTTG
T ss_pred CCccCHHHHHHHHHHHcCC---CcCCCCCcEEEECCCc
Confidence 7899999999999987751 1234789999998874
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=188.71 Aligned_cols=228 Identities=13% Similarity=-0.012 Sum_probs=160.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRDT--------RKGEAAARTM-AGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHTTS-SSEEEEEECCTTCHHHHHHHHHT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-cCCeeEEEcCCCCHHHHHHHHHh
Confidence 456899999999999999999999999 5999955442 210 000111 3468999999999999999887
Q ss_pred --CCCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCC
Q 007866 84 --GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKF 156 (586)
Q Consensus 84 --~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p 156 (586)
++|+|||+||... ...+++..+++|+.|+.++++++.....+|+|++||...+...........+.. +..+
T Consensus 84 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~--~~~~ 161 (291)
T 3rd5_A 84 VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSR--RYSP 161 (291)
T ss_dssp CCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSS--CCCH
T ss_pred cCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccccc--CCCC
Confidence 4699999999762 356678999999999999999999888889999999988753322111112222 3456
Q ss_pred CChHHHHHHHHHHHHHhhcCC---CC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHH
Q 007866 157 QDLMCDLKAQAEALVLFANNI---DG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~---~g--l~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (586)
...|+.||+..+.+.+.++.+ .| +++.+++||.+..+........+...... . ...+-....+|+|
T Consensus 162 ~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~A 232 (291)
T 3rd5_A 162 WLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMS-----A----ATRVVATDADFGA 232 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-----------------------------CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHH-----H----HHHHHhCCHHHHH
Confidence 678999999999988877543 34 99999999999876543221111111111 0 1112234599999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
++++.++. .+...|+.+++.++.
T Consensus 233 ~~~~~l~~-----~~~~~G~~~~vdgG~ 255 (291)
T 3rd5_A 233 RQTLYAAS-----QDLPGDSFVGPRFGY 255 (291)
T ss_dssp HHHHHHHH-----SCCCTTCEEEETTSS
T ss_pred HHHHHHHc-----CCCCCCceeCCcccc
Confidence 99998887 356788888887653
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=184.05 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++. ++. .....+ ...++.++.+|+.|.+++.++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~--------~~~-~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 71 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGFG--------DPA-PALAEIARHGVKAVHHPADLSDVAQIEALFA 71 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSS--------CCH-HHHHHHHTTSCCEEEECCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC--------chH-HHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 356899999999999999999999999 599985443 220 000001 12467889999999999988886
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++.+++ ++.+.+++|++||.+.+..
T Consensus 72 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 144 (255)
T 2q2v_A 72 LAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG------- 144 (255)
T ss_dssp HHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC-------
Confidence 7999999999752 23346788999999776665554 6677889999999987631
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc---eEEE-cCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFII-GSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~---~~i~-g~g 218 (586)
..+...|+.+|...+.+.+.++.+ +|++++++|||.++++......... ... .+.. .... ...
T Consensus 145 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 214 (255)
T 2q2v_A 145 --------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR-AAN-GGDPLQAQHDLLAEK 214 (255)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHHH-HHH-TCCHHHHHHHHHTTT
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhcccc-ccc-ccchHHHHHHHHhcc
Confidence 134568999999999988877543 5899999999999986422111000 000 0000 0000 222
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+++++|+|++++.++.. ......|+.|++.++..
T Consensus 215 ~p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 215 QPSLAFVTPEHLGELVLFLCSE---AGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp CTTCCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCC---ccCCCCCCEEEECCCcc
Confidence 3345689999999999977651 12235689999988743
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=182.25 Aligned_cols=226 Identities=18% Similarity=0.169 Sum_probs=162.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||+|+||++++++|+++| ++|++.|+.... +... ...+. .....++..+.+|+.|.+++.++++
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~l~-~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTAD-IDAC--VADLD-QLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHH-TTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHH-hhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999 499995554310 0000 00000 0112468899999999999887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.|+.++.+++... +..++|++||......
T Consensus 82 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~-------- 153 (262)
T 3pk0_A 82 AVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT-------- 153 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC--------
Confidence 7999999999752 23346778999999999998887654 7789999999865310
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++......+..........+ ...
T Consensus 154 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r 218 (262)
T 3pk0_A 154 ------GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP---------AGA 218 (262)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTST---------TSS
T ss_pred ------CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCC---------CCC
Confidence 1234578999999999999887654 6899999999999987432222333333333222 234
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 219 ~~~p~dva~~v~~L~s~---~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 219 LGTPEDIGHLAAFLATK---EAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred CcCHHHHHHHHHHHhCc---cccCCcCCEEEECCCeec
Confidence 67899999999877651 124578999999988644
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=184.83 Aligned_cols=221 Identities=12% Similarity=0.073 Sum_probs=157.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQ--------KELNDCLTQWRSKGFKVEASVCDLSSRSERQELM 77 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 457899999999999999999999999 5999955432 100 000000 1235788999999999888777
Q ss_pred --------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 83 --------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 --------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
.++|+|||+||... ...+++..+++|+.|+.++++++ ++.+.+++|++||...+.
T Consensus 78 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 151 (260)
T 2ae2_A 78 NTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------ 151 (260)
T ss_dssp HHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------
T ss_pred HHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc------
Confidence 46999999999752 23356778999999999999988 356778999999987752
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHH---HhcCCCceEEE
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVN---LAKPGWTKFII 215 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~---~~~~g~~~~i~ 215 (586)
+..+...|+.||...|.+.+.++.+ +|+++++++||.+.++...... +.... ...
T Consensus 152 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------- 214 (260)
T 2ae2_A 152 ---------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLI-------- 214 (260)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHH--------
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHH--------
Confidence 1234568999999999999887643 4899999999999865311000 00001 111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+..+...+.+++|+|++++.++.. ......|+.+++.++...+
T Consensus 215 -~~~~~~~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 215 -DRCALRRMGEPKELAAMVAFLCFP---AASYVTGQIIYVDGGLMAN 257 (260)
T ss_dssp -HTSTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred -hcCCCCCCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcccc
Confidence 112334588999999999877651 1234678999999876443
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=185.21 Aligned_cols=222 Identities=12% Similarity=-0.051 Sum_probs=150.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC---
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--- 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--- 84 (586)
||+|+||||+|+||++++++|+++| ++|++++ |++.+. .. . +.+|+.|.+++.+++++
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~--------r~~~~~--~~-------~-~~~Dl~~~~~v~~~~~~~~~ 61 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGID--------IRDAEV--IA-------D-LSTAEGRKQAIADVLAKCSK 61 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSSSE--EC-------C-TTSHHHHHHHHHHHHTTCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe--------CCchhh--cc-------c-cccCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999999999 5899844 433211 00 1 67899999999988864
Q ss_pred -CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCC-----c----
Q 007866 85 -ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET-----L---- 150 (586)
Q Consensus 85 -~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~-----~---- 150 (586)
+|+|||+||......+++..+++|+.|+.++++++. +.+.+|+|++||...+...... +..+. .
T Consensus 62 ~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~--~~~~~~~~~~~~~~~ 139 (257)
T 1fjh_A 62 GMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK--NPLALALEAGEEAKA 139 (257)
T ss_dssp CCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG--CTTHHHHHHTCHHHH
T ss_pred CCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhcccccc--chhhhhhcccchhhh
Confidence 599999999875356689999999999999999886 4567899999999887321100 00000 0
Q ss_pred ------ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCc
Q 007866 151 ------TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 151 ------p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~ 220 (586)
..+..+...|+.||...|.+.+.++.+ .|+++++++||.+.++....... ......... . ...
T Consensus 140 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-----~--~~~ 212 (257)
T 1fjh_A 140 RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-----F--VPP 212 (257)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC--------------------------C--CCS
T ss_pred hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHh-----c--ccc
Confidence 012234578999999999999887654 68999999999998875332211 000000000 0 122
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+.+++|+|++++.++.. ......|+.+++.++..
T Consensus 213 ~~~~~~~~dvA~~~~~l~~~---~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 213 MGRRAEPSEMASVIAFLMSP---AASYVHGAQIVIDGGID 249 (257)
T ss_dssp TTSCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESTTHH
T ss_pred cCCCCCHHHHHHHHHHHhCc---hhcCCcCCEEEECCCcc
Confidence 33578999999999987752 12256789999988743
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=184.71 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=158.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.... +... ...+.. ...++..+.+|+.|.+++.++++
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQEN-VDRT--VATLQG--EGLSVTGTVCHVGKAEDRERLVAMA 85 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 499995543210 0000 000000 12367889999999998887775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.++.++++++. +.+.+++|++||...|.
T Consensus 86 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 156 (260)
T 2zat_A 86 VNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH--------- 156 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC---------
Confidence 7999999999642 123467889999999998888764 56778999999998873
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.+|...|.+.+.++.+ +|+++++++||.+.++...... ....... ....+.
T Consensus 157 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~---------~~~~~~ 221 (260)
T 2zat_A 157 ------PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYM---------KESLRI 221 (260)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHH---------HHHHTC
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHH---------HhcCCC
Confidence 1234568999999999998877543 5899999999999876432100 0000111 111223
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+.+++|+|++++.++.. ......|++++++++...+
T Consensus 222 ~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSE---DASYITGETVVVGGGTASR 259 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSG---GGTTCCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHcCc---ccCCccCCEEEECCCcccc
Confidence 4588999999999877651 1223578999999987765
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=180.79 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=157.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+ ..|..... .....+.+|+.|.+++.++++
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~--------~~r~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAG-ARVAV--------ADRAVAGI--------AADLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEE--------CSSCCTTS--------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEE--------EeCCHHHH--------HhhhccCcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 59999 44443311 112445799999988776654
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 158 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR---------- 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------
Confidence 6899999999862 23456788899999999999988 555678999999987762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCceEEEcC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-------~~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++.... ......... ..
T Consensus 159 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~---------~~ 224 (266)
T 3uxy_A 159 -----PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAEL---------GR 224 (266)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHH---------HT
T ss_pred -----CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHH---------Hh
Confidence 2245678999999999998877543 48999999999998763211 011111222 12
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+...+.+++|+|++++.++.. ......|+++++.+|..++
T Consensus 225 ~~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 225 TVPLGRIAEPEDIADVVLFLASD---AARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTCCCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---hhcCCcCCEEEECcCEeCC
Confidence 23445678999999999987751 1234679999999987553
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=182.20 Aligned_cols=220 Identities=12% Similarity=0.033 Sum_probs=154.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++|+||||+|+||++++++|+++| ++|+++++.... +... ...+.. ...++.++.+|+.|.+++.++++
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKS-CDSV--VDEIKS--FGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHH-HHHH--HHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHH-HHHH--HHHHHh--cCCceeEEECCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 588885443210 0000 000000 12468889999999999888774
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++. +.+.+++|++||...+..
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 186 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG---------- 186 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC----------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC----------
Confidence 6899999999762 223567889999999888877765 457789999999977631
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..+...|+.+|...|.+.+.++.+ .|++++++|||.+.++......+.+........ ....++
T Consensus 187 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~~~~~~ 252 (285)
T 2c07_A 187 -----NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI---------PAGRMG 252 (285)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC---------TTSSCB
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhC---------CCCCCC
Confidence 134568999999999888877543 589999999999998754433333333332221 123478
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+++|+|++++.++.. ......|+.+++.++.
T Consensus 253 ~~~dvA~~~~~l~~~---~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 253 TPEEVANLACFLSSD---KSGYINGRVFVIDGGL 283 (285)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCC---CcCCCCCCEEEeCCCc
Confidence 999999999987751 1223578999998874
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=187.03 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=161.5
Q ss_pred CCCCCCCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l 78 (586)
|....+.+|+++||||+ |+||++++++|+++| ++|+++++... ... ....+... ..++.++.+|+.|.+++
T Consensus 1 M~~~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~--~~~--~~~~l~~~--~~~~~~~~~D~~~~~~v 73 (261)
T 2wyu_A 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER--LRP--EAEKLAEA--LGGALLFRADVTQDEEL 73 (261)
T ss_dssp CEEECCTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGG--GHH--HHHHHHHH--TTCCEEEECCTTCHHHH
T ss_pred CCccCCCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH--HHH--HHHHHHHh--cCCcEEEECCCCCHHHH
Confidence 43334567899999999 999999999999999 58998554321 000 00000000 12378899999999998
Q ss_pred HHHhc-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCcccccc
Q 007866 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFD 138 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~ 138 (586)
.++++ ++|+|||+||... ...+++..+++|+.|+.++++++...- -.++|++||.+.+.
T Consensus 74 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~- 152 (261)
T 2wyu_A 74 DALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK- 152 (261)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC-
Confidence 87775 6899999999752 233467889999999999999998752 24899999987652
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKF 213 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~ 213 (586)
+..+...|+.||...|.+.+.++.+ +|+++++++||.++++.... ..+.+.....+..
T Consensus 153 --------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--- 215 (261)
T 2wyu_A 153 --------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTA--- 215 (261)
T ss_dssp --------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHS---
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcC---
Confidence 1234568999999999998877543 48999999999999875332 1222333222211
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHH
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~e 265 (586)
+...+.+++|+|++++.++.. ......|+.+++.++...+..|
T Consensus 216 ------p~~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 216 ------PLRRNITQEEVGNLGLFLLSP---LASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp ------TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGBC--
T ss_pred ------CCCCCCCHHHHHHHHHHHcCh---hhcCCCCCEEEECCCccccCCC
Confidence 123467899999999987751 1234578999999986655433
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=180.55 Aligned_cols=218 Identities=13% Similarity=0.012 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCH----HH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDI----SQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~----~~ 77 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++. ++++. .....+ ...++.++.+|+.|. ++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRH-------SEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDC 80 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC-------ChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHH
Confidence 456899999999999999999999999 599985541 21100 000000 024688999999999 88
Q ss_pred HHHHhc-------CCCEEEEcccCCCC-------C-----------CChhHHHHHHHHHHHHHHHHHHhC---CC-----
Q 007866 78 IKKVLE-------GASTVFYVDATDLN-------T-----------DDFYNCYMIIVQGAKNVVTACREC---KV----- 124 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~~-------~-----------~~~~~~~~~Nv~gt~~lleaa~~~---gv----- 124 (586)
+.++++ ++|+|||+||.... . .+++..+++|+.++.++++++... +.
T Consensus 81 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 160 (276)
T 1mxh_A 81 CEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSR 160 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCC
Confidence 887775 68999999997521 1 456678999999999999999874 44
Q ss_pred -CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH
Q 007866 125 -RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP 200 (586)
Q Consensus 125 -kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~ 200 (586)
+++|++||...+. +..+...|+.||...+.+.+.++.+ +|+++++++||.+.++ . ...+
T Consensus 161 ~g~iv~isS~~~~~---------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~~~ 223 (276)
T 1mxh_A 161 NLSVVNLCDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AMPQ 223 (276)
T ss_dssp CEEEEEECCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SSCH
T ss_pred CcEEEEECchhhcC---------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cCCH
Confidence 7999999998763 1234568999999999998877543 4899999999999998 3 2223
Q ss_pred HHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 201 LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 201 ~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..........+ ..+++.+++|+|++++.++.. ......|+.+++.++.
T Consensus 224 ~~~~~~~~~~p--------~~r~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 224 ETQEEYRRKVP--------LGQSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHHHTTCT--------TTSCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HHHHHHHhcCC--------CCCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCch
Confidence 33333322211 112378999999999987751 1234578999998874
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=179.50 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=155.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC----CCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL----SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l----~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+.+++++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++.++.+|+.|.+++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 75 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNR--------EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDR 75 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHH
Confidence 457899999999999999999999999 5999955432 100 000000 01268899999999999988
Q ss_pred Hhc------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 81 VLE------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 81 ~l~------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+++ ++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+.+++|++||...+..
T Consensus 76 ~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 150 (260)
T 2z1n_A 76 LFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRP----- 150 (260)
T ss_dssp HHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCC-----
Confidence 886 6999999999652 23356788999999996666655 4557789999999987631
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH--HhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN--LAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~--~~~~g~~~~i~g~g 218 (586)
..+...|+.||...+.+.+.++.+ +|++++++|||.++++........... ..............
T Consensus 151 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T 2z1n_A 151 ----------WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASR 220 (260)
T ss_dssp ----------CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------C
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhc
Confidence 234568999999999988876543 589999999999998864311100000 00000000011111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 221 ~p~~r~~~~~dva~~v~~l~s~---~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 221 IPMGRVGKPEELASVVAFLASE---KASFITGAVIPVDGGA 258 (260)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCccCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 2234578999999999987651 1245678999998864
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=180.21 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=153.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-C-CCCCCCC---CCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-S-LLPDSLS---SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~-~~~~~l~---~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+|+++||||+|+||++++++|+++| ++|++.++ +++. . .....+. ..++.++.+|+.|.+++.++
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 73 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGF--------GDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECC--------SCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeC--------CcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHH
Confidence 46899999999999999999999999 58998444 3221 0 0000000 23678899999999998877
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++ ++|+|||+||... ...+++..+++|+.|+.++++++. +.+.+++|++||...+..
T Consensus 74 ~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 148 (260)
T 1x1t_A 74 VDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA----- 148 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcC-----
Confidence 75 6899999999752 233467889999999999988774 346789999999987631
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc-C-CCceEEE-cC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK-P-GWTKFII-GS 217 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~-~-g~~~~i~-g~ 217 (586)
..+...|+.||...|.+.+.++. ..|+++++++||.+.++......+....... . ....... ..
T Consensus 149 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T 1x1t_A 149 ----------SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE 218 (260)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhc
Confidence 23456899999999998887653 3589999999999998754322111100000 0 0000000 11
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 219 ~~p~~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 219 KQPSLQFVTPEQLGGTAVFLASD---AAAQITGTTVSVDGGW 257 (260)
T ss_dssp HCTTCCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCh---hhcCCCCCEEEECCCc
Confidence 12234588999999999987751 1234678999998874
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=187.62 Aligned_cols=234 Identities=15% Similarity=0.079 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||++++++|+++| ++|+++++.... ... ....+.......++.++.+|+.|.+++.++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEA-GVQ--CKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 599996554210 000 00001111112357889999999998887775
Q ss_pred -----CCCEEEEcccCCCCCCChhHHHHHHHHHHHHH----HHHHHhCC---CCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNV----VTACRECK---VRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~l----leaa~~~g---vkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++|+|||+||.. ...+++..+++|+.++.++ ++.+++.+ .+++|++||...+..
T Consensus 81 ~~~~g~id~lv~~Ag~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 146 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVN-NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP------------- 146 (267)
T ss_dssp HHHHSCCCEEEECCCCC-CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------------
T ss_pred HHHcCCCCEEEECCCCC-ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC-------------
Confidence 479999999975 3567889999999966554 45554443 579999999987631
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCcccccc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~-----~~~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
..+...|+.||...|.+.+.++ ...|+++++++||.+.++....... ....... ..............++
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 222 (267)
T 2gdz_A 147 --VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYI--EYKDHIKDMIKYYGIL 222 (267)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGG--GGHHHHHHHHHHHCCB
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhh--hHHHHHHHHhccccCC
Confidence 1234689999999999887631 2369999999999997653111000 0000000 0000000001123478
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHH
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDF 266 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei 266 (586)
+++|+|++++.++. .+...|+++++++++.+++.|+
T Consensus 223 ~~~dvA~~v~~l~s-----~~~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 223 DPPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp CHHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEECCC
T ss_pred CHHHHHHHHHHHhc-----CcCCCCcEEEecCCCcccccCc
Confidence 99999999998887 3457899999999887776553
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=185.44 Aligned_cols=225 Identities=16% Similarity=0.146 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|++.|+.... +.. ....+. .....++.++.+|+.|.+++.++++
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~~--~~~~l~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 113 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRE-LSS--VTAELG-ELGAGNVIGVRLDVSDPGSCADAARTV 113 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGG-GHH--HHHHHT-TSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHH-hhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 599996554311 000 000000 0112478899999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+..
T Consensus 114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~--------- 184 (293)
T 3rih_A 114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT--------- 184 (293)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB---------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC---------
Confidence 5799999999762 23356788999999999999987 4567789999999865310
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.++++......+.+........+ ...+
T Consensus 185 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p---------~~r~ 250 (293)
T 3rih_A 185 -----GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIP---------MGML 250 (293)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTST---------TSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCC---------CCCC
Confidence 1234578999999999998877543 5899999999999987432222333443333322 2235
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
...+|+|++++.++.. ......|+++++.+|..+
T Consensus 251 ~~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 251 GSPVDIGHLAAFLATD---EAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred CCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 6789999999877641 124577999999988654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-20 Score=180.94 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++. .++.. .....+ ...++.++.+|+.|.+++.+++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRS-------KEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCC-------ChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999 589985541 11100 000000 1235788999999999888877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++.. .+ .+++|++||...+.
T Consensus 77 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------ 150 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------ 150 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC------
Confidence 6 7899999999752 2234678899999999988877654 35 67999999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.+|...|.+.+.++.+ .|++++++||+.++++...... +.........
T Consensus 151 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~--------- 212 (261)
T 1gee_A 151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESM--------- 212 (261)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTT---------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhc---------
Confidence 2245678999999988888776543 4899999999999987532111 1122222221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.....+++++|+|++++.++.. ......|+.+++.++..
T Consensus 213 ~~~~~~~~~~dva~~~~~l~~~---~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 213 IPMGYIGEPEEIAAVAAWLASS---EASYVTGITLFADGGMT 251 (261)
T ss_dssp CTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCc---cccCCCCcEEEEcCCcc
Confidence 1224578999999999987751 12346789999998754
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=178.23 Aligned_cols=219 Identities=11% Similarity=0.077 Sum_probs=162.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++.++.+|+.|.+++.++++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQ--------ASAEKFENSMKEKGFKARGLVLNISDIESIQNFFA 74 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 57899999999999999999999999 5899855432 100 000000 13468899999999998887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+..++|++||...+..
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------- 147 (247)
T 3lyl_A 75 EIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAG------- 147 (247)
T ss_dssp HHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC-------
Confidence 4799999999862 2345678999999999999987654 45569999999877631
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++......+........+ .+..
T Consensus 148 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~ 210 (247)
T 3lyl_A 148 --------NPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATK---------IPSG 210 (247)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTT---------STTC
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhc---------CCCC
Confidence 234578999999888888776543 58999999999999886555444433333322 2345
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
.+.+++|+|++++.++.. ......|+++++.+|..+
T Consensus 211 ~~~~~~dva~~i~~l~s~---~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 211 QIGEPKDIAAAVAFLASE---EAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp CCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSSC
T ss_pred CCcCHHHHHHHHHHHhCC---CcCCccCCEEEECCCEec
Confidence 688999999999987751 124467999999987654
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=178.75 Aligned_cols=218 Identities=12% Similarity=0.125 Sum_probs=151.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++... ++. .+.. ...++..+.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~-------~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~ 74 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPA-------PEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGK 74 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCC-------HHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCch-------hHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHH
Confidence 457899999999999999999999999 59999554320 100 0000 12468889999999998887753
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.++ +++.+.+++|++||...+..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 147 (249)
T 2ew8_A 75 QVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK------- 147 (249)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC-------
Confidence 6899999999752 2234677899999998888777 55567789999999987631
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.||...|.+.+.++.+ .|+++++++||.+.++... ........ .... . . ...
T Consensus 148 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~~-~-~-----~~~ 211 (249)
T 2ew8_A 148 --------IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFD-VLPN-M-L-----QAI 211 (249)
T ss_dssp --------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------C-T-T-----SSS
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhh-HHHH-h-h-----Ccc
Confidence 234578999999999998877543 5899999999999887532 11100000 0000 0 0 123
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 212 ~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 212 PRLQVPLDLTGAAAFLASD---DASFITGQTLAVDGGM 246 (249)
T ss_dssp CSCCCTHHHHHHHHHHTSG---GGTTCCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCc---ccCCCCCcEEEECCCc
Confidence 4578999999999987651 1234678999998874
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-20 Score=183.77 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=130.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|+||++++++|+++| ++|+++|+.... .. .....+ ...++.++.+|+.|.+++.++++
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~----~~---~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEA----AE---AVAKQIVADGGTAISVAVDVSDPESAKAMAD 78 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----HH---HHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHH----HH---HHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 457899999999999999999999999 589995553210 00 000000 12467889999999998888776
Q ss_pred -------CCCEEEEcccCC----------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCC
Q 007866 84 -------GASTVFYVDATD----------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 -------~~D~Vih~aa~~----------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++|+|||+||.. ....+++..+++|+.++.++.+++ ++.+..++|++||...|
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------ 152 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW------ 152 (253)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc------
Confidence 789999999973 123346788999999966655544 55567799999999876
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g 218 (586)
.+...|+.||+..|.+.+.++.+ .|+++.+++||.++++......+ .+.+.+.++
T Consensus 153 ------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~--------- 211 (253)
T 3qiv_A 153 ------------LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKG--------- 211 (253)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhcc---------
Confidence 13356999999999988877543 58999999999999885432211 122222222
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.+...+.+++|+|++++.++.. ......|++|++.+|..++
T Consensus 212 ~~~~~~~~~~dva~~~~~l~s~---~~~~~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 212 LPLSRMGTPDDLVGMCLFLLSD---EASWITGQIFNVDGGQIIR 252 (253)
T ss_dssp --------CCHHHHHHHHHHSG---GGTTCCSCEEEC-------
T ss_pred CCCCCCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCeecC
Confidence 2234466789999999987751 1234579999999987543
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=178.56 Aligned_cols=207 Identities=14% Similarity=0.002 Sum_probs=144.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+++|+||||+|+||++++++|+++|. ++|+++++.. ++. .+... ...++.++.+|+.|.+++.++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~--------~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV--------EKATELKSI-KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG--------GGCHHHHTC-CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCH--------HHHHHHHhc-cCCceEEEEeecCCHHHHHHHHHH
Confidence 468999999999999999999999993 3899855543 210 01111 24578999999999999888876
Q ss_pred --------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC----------C-----CCEEEEecC
Q 007866 84 --------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVYNST 132 (586)
Q Consensus 84 --------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~----------g-----vkr~I~~SS 132 (586)
++|+|||+||... ...+++..+++|+.++.++++++... + ..++|++||
T Consensus 73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 152 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence 8999999999753 12346778999999999998887543 4 679999999
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC
Q 007866 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG 209 (586)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g 209 (586)
...+.... .+.. +..+...|+.+|+..|.+.+.++.+ .|++++++|||.+.++....
T Consensus 153 ~~~~~~~~------~~~~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------ 212 (250)
T 1yo6_A 153 GLGSITDN------TSGS--AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------ 212 (250)
T ss_dssp GGGCSTTC------CSTT--SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------
T ss_pred CccccCCc------cccc--ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC------------
Confidence 98764221 1111 2245678999999999999887654 38999999999997653210
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
..+++.+|+|++++.++... .....|+.+.+.+
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~g 245 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKL---DNSHNGRFFMRNL 245 (250)
T ss_dssp ------------------HHHHHHHHHHHTTC---CGGGTTCEEETTE
T ss_pred ------------CCCCCHHHHHHHHHHHHhcc---cccCCCeEEEECC
Confidence 13578999999999888721 1234566555443
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-20 Score=181.11 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=161.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|+||++++++|+++| ++|++.|+.... .. .....+ ...++.++.+|+.|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----~~---~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEG----AE---AVAAAIRQAGGKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHH----HH---HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH----HH---HHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 456899999999999999999999999 589986554310 00 000000 13468899999999998887775
Q ss_pred -------CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 82 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------- 152 (256)
T 3gaf_A 82 AALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN--------- 152 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC---------
Confidence 6899999999862 224567889999999999999873 45667999999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++.... ..+......... .+..
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---------~p~~ 217 (256)
T 3gaf_A 153 ------TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKH---------TPLG 217 (256)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTT---------CTTS
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhc---------CCCC
Confidence 2234678999999999998877643 58999999999998753211 112222222222 2335
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCH
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~ 263 (586)
.+.+++|+|++++.++.. ......|+++++.+|...++
T Consensus 218 r~~~~~dva~~~~~L~s~---~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 218 RLGEAQDIANAALFLCSP---AAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCCC-
T ss_pred CCCCHHHHHHHHHHHcCC---cccCccCCEEEECCCccccC
Confidence 678899999999987751 12456799999999876654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=179.34 Aligned_cols=217 Identities=12% Similarity=0.074 Sum_probs=159.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||+|+||++++++|+++| ++|++.|+.. +.. .....+ ..+...+.+|+.|.+++.++++
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 76 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSE--------SGAQAISDYL-GDNGKGMALNVTNPESIEAVLKA 76 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-cccceEEEEeCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999855432 110 000001 1246789999999999888776
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 77 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------- 147 (248)
T 3op4_A 77 ITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM--------- 147 (248)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------
Confidence 6899999999762 2345678999999999999998754 4667999999987763
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+......+......... .+...
T Consensus 148 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~r 212 (248)
T 3op4_A 148 ------GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQ---------VPAGR 212 (248)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHT---------CTTCS
T ss_pred ------CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhc---------CCCCC
Confidence 2245678999999888887766542 58999999999998875443333222222221 22345
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 213 ~~~p~dva~~v~~L~s~---~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 213 LGDPREIASAVAFLASP---EAAYITGETLHVNGGM 245 (248)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCC---ccCCccCcEEEECCCe
Confidence 78899999999877641 1234679999998875
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=179.45 Aligned_cols=220 Identities=9% Similarity=-0.004 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.. ... .....+ ...++.++.+|+.|.+++.+++
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 102 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSH--------PADEKAEHLQKTYGVHSKAYKCNISDPKSVEETI 102 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSS--------CCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHH
Confidence 456899999999999999999999999 5999855432 210 000000 0246889999999999988877
Q ss_pred cC-------CCEEEEcccCCCC------C---CChhHHHHHHHHH----HHHHHHHHHhCCCCEEEEecCccccccCCCC
Q 007866 83 EG-------ASTVFYVDATDLN------T---DDFYNCYMIIVQG----AKNVVTACRECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~~-------~D~Vih~aa~~~~------~---~~~~~~~~~Nv~g----t~~lleaa~~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++ +|+|||+||.... . .+++..+++|+.| ++++++.+++.+.+++|++||...+...
T Consensus 103 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--- 179 (279)
T 3ctm_A 103 SQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN--- 179 (279)
T ss_dssp HHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC----
T ss_pred HHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC---
Confidence 53 8999999997522 1 2346788999999 6677788887788999999998765210
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
...+...|+.+|...|.+.+.++.+ .+ ++++++|+.+.++......+......... .
T Consensus 180 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~ 239 (279)
T 3ctm_A 180 ----------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKDMKAKWWQL---------T 239 (279)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHH---------S
T ss_pred ----------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChHHHHHHHHh---------C
Confidence 1245678999999999999877543 56 99999999998875432222222222111 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+...+++++|+|++++.++.. ......|+.+++.++..
T Consensus 240 p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 240 PLGREGLTQELVGGYLYLASN---ASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp TTCSCBCGGGTHHHHHHHHSG---GGTTCCSCEEEESTTCC
T ss_pred CccCCcCHHHHHHHHHHHhCc---cccCccCCEEEECCCee
Confidence 123578999999999987751 12346789999998754
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=175.45 Aligned_cols=211 Identities=14% Similarity=0.074 Sum_probs=150.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++|+||||+|+||++++++|+++| ++|++++ |++++ . .....+.+|+.|.+++.++++
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~--------r~~~~--~------~~~~~~~~D~~~~~~~~~~~~~~ 75 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTH--------RGSGA--P------KGLFGVEVDVTDSDAVDRAFTAV 75 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSCC--C------TTSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEe--------CChHH--H------HHhcCeeccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 5999944 43321 1 112248899999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++++++. +.+.+++|++||...+..
T Consensus 76 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 146 (247)
T 1uzm_A 76 EEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG--------- 146 (247)
T ss_dssp HHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccC---------
Confidence 5799999999752 234568899999999999998775 357789999999876521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
..+...|+.||...|.+.+.++.+ +|+++++++||.+.++......+......... .+...+
T Consensus 147 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~~~~ 211 (247)
T 1uzm_A 147 ------IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQF---------IPAKRV 211 (247)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGG---------CTTCSC
T ss_pred ------CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhc---------CCCCCC
Confidence 124568999999988888776543 58999999999997653111111111111111 112347
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 212 ~~~~dvA~~~~~l~s~---~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASE---DASYISGAVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCc---cccCCcCCEEEECCCcc
Confidence 8999999999987751 12346789999988754
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=179.14 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=159.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
...+++++||||+|+||++++++|+++| ++|.+.++....... .....+ ...++..+.+|+.|.+++.+++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~ 97 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAAD------EVVAAIAAAGGEAFAVKADVSQESEVEALF 97 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHH------HHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999999999 588885542110000 000000 1346889999999999988777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+..
T Consensus 98 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------ 171 (269)
T 4dmm_A 98 AAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMG------ 171 (269)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHC------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC------
Confidence 5 6899999999862 234567899999999999998873 446679999999877631
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++....... ...... ...
T Consensus 172 ---------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~---------~p~ 230 (269)
T 4dmm_A 172 ---------NPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAA---EKLLEV---------IPL 230 (269)
T ss_dssp ---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHH---HHHGGG---------CTT
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccH---HHHHhc---------CCC
Confidence 234568999999888887766542 68999999999999875432211 122211 123
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+.+|+|++++.++... ......|+++++.+|..+
T Consensus 231 ~r~~~~~dvA~~v~~l~s~~--~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 231 GRYGEAAEVAGVVRFLAADP--AAAYITGQVINIDGGLVM 268 (269)
T ss_dssp SSCBCHHHHHHHHHHHHHCG--GGGGCCSCEEEESTTSCC
T ss_pred CCCCCHHHHHHHHHHHhCCc--ccCCCcCCEEEECCCeec
Confidence 45778999999999887621 123467999999988654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=178.60 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 72 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLD--------EEGAATAREL-GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-CCceeEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999855432 110 000111 2357889999999999888776
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHH----HHHHHHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKN----VVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~----lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.+ +++.+++.+.+++|++||...+..
T Consensus 73 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 144 (254)
T 1hdc_A 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG-------- 144 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC--------
Confidence 7999999999752 223467889999999975 455556667789999999987631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.||...|.+.+.++.+ .|++++++|||.++++.. . ...... ........+...
T Consensus 145 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----~----~~~~~~-~~~~~~~~p~~~ 208 (254)
T 1hdc_A 145 -------LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----A----ETGIRQ-GEGNYPNTPMGR 208 (254)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----H----HHTCCC-STTSCTTSTTSS
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----c----ccchhH-HHHHHhcCCCCC
Confidence 134578999999999998877543 589999999999987631 1 110000 000001112234
Q ss_pred cc-chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 224 FT-YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 224 ~i-~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+. +.+|+|++++.++.. ......|+.+++.++..
T Consensus 209 ~~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 209 VGNEPGEIAGAVVKLLSD---TSSYVTGAELAVDGGWT 243 (254)
T ss_dssp CB-CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHhCc---hhcCCCCCEEEECCCcc
Confidence 67 899999999987751 12346789999988753
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=181.30 Aligned_cols=213 Identities=13% Similarity=0.053 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH-HHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++|+.+|+++++.... .....+.......++.++.+|+.|. +++.++++
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-----~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-----TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK 77 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-----HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-----HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHH
Confidence 3578999999999999999999999995338885543210 0000010111123678899999997 77776665
Q ss_pred ------CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-------CCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 ------GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-------VRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-------vkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++|+|||+||.. ...+++..+++|+.|+.++++++.... ..++|++||...+..
T Consensus 78 ~~~~~g~id~lv~~Ag~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 144 (254)
T 1sby_A 78 IFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------------ 144 (254)
T ss_dssp HHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------------
T ss_pred HHHhcCCCCEEEECCccC-CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC------------
Confidence 789999999985 456789999999999999999886431 357999999987631
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---H---HHHHHHhcCCCceEEEcCCCcc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---V---PLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~---~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.||...|.+.+.++.+ .|+++++++||.+.++..... . +.+ ..... .
T Consensus 145 ---~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~------------~ 208 (254)
T 1sby_A 145 ---IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRV-AELLL------------S 208 (254)
T ss_dssp ---CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTH-HHHHT------------T
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHH-HHHHh------------c
Confidence 234568999999999999887654 589999999999987631110 0 000 00100 1
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.++.+++|+|++++.+++ ....|+.|++.++
T Consensus 209 ~~~~~~~dvA~~i~~~~~------~~~~G~~~~v~gG 239 (254)
T 1sby_A 209 HPTQTSEQCGQNFVKAIE------ANKNGAIWKLDLG 239 (254)
T ss_dssp SCCEEHHHHHHHHHHHHH------HCCTTCEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHH------cCCCCCEEEEeCC
Confidence 234489999999998886 3467899999987
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=182.82 Aligned_cols=221 Identities=15% Similarity=0.111 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+.... + . ..... ...++..+.+|+.|.+++.++++
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~---~---~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDA-A---V---RVANE-IGSKAFGVRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHH-H---H---HHHHH-HCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-H---H---HHHHH-hCCceEEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599996554210 0 0 00000 12468899999999999887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 165 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS---------- 165 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc----------
Confidence 6899999999751 233467788899999999888774 34566999999998762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+.++... ......... ....
T Consensus 166 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~~~~ 231 (277)
T 4dqx_A 166 -----AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSD---------FNAR 231 (277)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHH---------HHTT
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHH---------HHhc
Confidence 2245678999999999998877543 5899999999999765310 000111111 1222
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.....+.+++|+|++++.++.. ......|+++++.+|..++
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASD---RSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSSSC
T ss_pred CcccCCcCHHHHHHHHHHHhCC---ccCCCcCCEEEECCchhhh
Confidence 3345578899999999987751 1234679999999986554
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=187.16 Aligned_cols=241 Identities=20% Similarity=0.172 Sum_probs=169.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--CCC---CCCC--CCCCeEEEEccCCCHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--SLL---PDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~--~~~---~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
+.+++++||||+|+||++++++|+++| ++|++.|+... ..+.... ... ...+ ...++..+.+|+.|.+++
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVG--LDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBC--TTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCccc--ccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 356899999999999999999999999 59999766421 1111110 000 0001 124578899999999998
Q ss_pred HHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCC----------CEEEEecCcc
Q 007866 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV----------RRLVYNSTAD 134 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gv----------kr~I~~SS~~ 134 (586)
.++++ ++|+|||+||... ...+++..+++|+.|+.++++++...-. .++|++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 87775 6899999999862 2345678999999999999998754311 4899999988
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 007866 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (586)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~ 211 (586)
.+.. ..+...|+.||+..+.+.+.++.+ +|+++.+++|| +..+..........
T Consensus 182 ~~~~---------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~-------- 237 (322)
T 3qlj_A 182 GLQG---------------SVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM-------- 237 (322)
T ss_dssp HHHC---------------BTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC----------
T ss_pred HccC---------------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh--------
Confidence 7631 234568999999999998877654 68999999999 65543222111100
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc-----------------CHHHHHHHHHHHc
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI-----------------KFWDFLSIILEGL 274 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~-----------------t~~ei~~~i~~~~ 274 (586)
........++..+|+|++++.++.. ......|+.+++.+|... ++.|+++.+.+.+
T Consensus 238 ----~~~~~~~~~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~ 310 (322)
T 3qlj_A 238 ----ATQDQDFDAMAPENVSPLVVWLGSA---EARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLL 310 (322)
T ss_dssp ----------CCTTCGGGTHHHHHHHTSG---GGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHH
T ss_pred ----hccccccCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHh
Confidence 1112234567899999999877641 124568999999987643 7799999999998
Q ss_pred CCCCCC
Q 007866 275 GYQRPF 280 (586)
Q Consensus 275 g~~~~~ 280 (586)
|.+.+.
T Consensus 311 ~~~~~~ 316 (322)
T 3qlj_A 311 GKARPP 316 (322)
T ss_dssp HHSCCC
T ss_pred hccCCC
Confidence 865443
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=180.73 Aligned_cols=227 Identities=12% Similarity=0.036 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 90 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGE--------EGLRTTLKELREAGVEADGRTCDVRSVPEIEALV 90 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999999 5999955432 110 000000 1246788999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC------CCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~------gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++++++... +.+++|++||...+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~----- 165 (277)
T 2rhc_B 91 AAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ----- 165 (277)
T ss_dssp HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS-----
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc-----
Confidence 5 6899999999752 12345788999999999999987655 567999999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC--CCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~--g~~~~i~g~ 217 (586)
+..+...|+.+|...|.+.+.++. ..|++++++|||.+.++........+...... +........
T Consensus 166 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
T 2rhc_B 166 ----------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA 235 (277)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ----------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh
Confidence 123456899999999998887653 36899999999999876321111000000000 000000011
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+++++|+|++++.++.. ......|+++++.++.
T Consensus 236 ~~p~~r~~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 236 RVPIGRYVQPSEVAEMVAYLIGP---GAAAVTAQALNVCGGL 274 (277)
T ss_dssp HSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---hhcCCCCcEEEECCCc
Confidence 12234588999999999987751 1234678999998874
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-20 Score=183.09 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=153.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.|+.. ++. ..... ...++..+.+|+.|.+++.++++
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTRE--------DKLKEIAAD-LGKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH-HCSSEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHH-hCCceEEEEeecCCHHHHHHHHHH
Confidence 456899999999999999999999999 5898855432 110 00000 12468899999999998887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 95 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 165 (266)
T 3grp_A 95 AEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV--------- 165 (266)
T ss_dssp HHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC---------
Confidence 6899999999762 13356788999999966666554 445677999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++......+......... .+...
T Consensus 166 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~---------~p~~r 230 (266)
T 3grp_A 166 ------GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAM---------IPMKR 230 (266)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTT---------CTTCS
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhc---------CCCCC
Confidence 1234578999999888887776543 58999999999998764322223333333332 23345
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 231 ~~~~edvA~~v~~L~s~---~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 231 MGIGEEIAFATVYLASD---EAAYLTGQTLHINGGM 263 (266)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCc---cccCccCCEEEECCCe
Confidence 77899999999877751 1234679999998875
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=178.27 Aligned_cols=216 Identities=17% Similarity=0.106 Sum_probs=155.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHh--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVL-- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l-- 82 (586)
+.+|+++||||+|+||++++++|+++| ++|+++|+.. ++. ... . ..++.++.+|+.|.+++.+++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~ 71 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINE--------SKLQELE-K--YPGIQTRVLDVTKKKQIDQFANE 71 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHGGGG-G--STTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHH-h--ccCceEEEeeCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 110 011 1 126889999999999888765
Q ss_pred -cCCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 83 -EGASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 83 -~~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
.++|+|||+||.... ..+++..+++|+.++.++++++. +.+.+++|++||...+...
T Consensus 72 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 140 (246)
T 2ag5_A 72 VERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG----------- 140 (246)
T ss_dssp CSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-----------
T ss_pred hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC-----------
Confidence 468999999997621 23467789999999999998875 3467899999998775311
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH------HHHHHHhcCCCceEEEcCCCcc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV------PLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~------~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.||...|.+.+.++.+ +|++++++||+.++++...... .......... ...
T Consensus 141 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 208 (246)
T 2ag5_A 141 ---VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR---------QKT 208 (246)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHT---------CTT
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhc---------CCC
Confidence 114568999999999998887543 5899999999999987421101 1111111111 112
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 209 ~~~~~~~dvA~~v~~l~s~---~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 209 GRFATAEEIAMLCVYLASD---ESAYVTGNPVIIDGGW 243 (246)
T ss_dssp SSCEEHHHHHHHHHHHHSG---GGTTCCSCEEEECTTG
T ss_pred CCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 3478899999999987751 1234678999998864
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=183.05 Aligned_cols=226 Identities=16% Similarity=0.085 Sum_probs=157.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||+|+||++++++|+++| ++|++.|+.... .. .....+ ..++..+.+|+.|.+++.++++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~----~~---~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 96 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDA----AD---AAATKI-GCGAAACRVDVSDEQQIIAMVDA 96 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHH----HH---HHHHHH-CSSCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----HH---HHHHHc-CCcceEEEecCCCHHHHHHHHHH
Confidence 3457899999999999999999999999 599996554210 00 000011 3467899999999998887765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 97 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~--------- 167 (277)
T 3gvc_A 97 CVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV--------- 167 (277)
T ss_dssp HHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc---------
Confidence 6899999999862 2345678999999999999887754 5667999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC---CCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS---GEN 220 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~---g~~ 220 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++... ..... ..+........ ...
T Consensus 168 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~----~~~~~-~~~~~~~~~~~~~~~~~ 236 (277)
T 3gvc_A 168 ------AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQ----TAMAM-FDGALGAGGARSMIARL 236 (277)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----HHHTC-C------CCHHHHHHHH
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHH----Hhhhc-chhhHHHHhhhhhhhcc
Confidence 2244578999999999998866543 6899999999999876311 00000 00000000000 011
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
...+.+.+|+|++++.++.. ......|+++++.+|...+
T Consensus 237 ~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 237 QGRMAAPEEMAGIVVFLLSD---DASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGS
T ss_pred ccCCCCHHHHHHHHHHHcCC---ccCCccCcEEEECCcchhc
Confidence 23578899999999987751 1245779999999886554
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=178.94 Aligned_cols=212 Identities=15% Similarity=0.102 Sum_probs=156.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+||||||+|+||++++++|+++| ++|+++|+. .... ......+.+|+.|.+++.++++
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~--------~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~ 74 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSLD--------EKSD-------VNVSDHFKIDVTNEEEVKEAVEK 74 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESC--------C--C-------TTSSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCC--------chhc-------cCceeEEEecCCCHHHHHHHHHH
Confidence 3467999999999999999999999999 489985443 2211 1246788999999998887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+..
T Consensus 75 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 146 (269)
T 3vtz_A 75 TTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAA-------- 146 (269)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB--------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC--------
Confidence 6899999999762 2234577889999999999887654 46679999999988731
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCC-----------cHHHHHHHhcCCCceE
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQ-----------LVPLLVNLAKPGWTKF 213 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~-----------~~~~l~~~~~~g~~~~ 213 (586)
..+...|+.||+..|.+.+.++.+. ++++.+++||.+.++.... .........
T Consensus 147 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~------- 212 (269)
T 3vtz_A 147 -------TKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEW------- 212 (269)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHH-------
T ss_pred -------CCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHH-------
Confidence 2345789999999999998776432 7999999999998753110 001111111
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+..+...+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 213 --~~~~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 213 --GRQHPMGRIGRPEEVAEVVAFLASD---RSSFITGACLTVDGGL 253 (269)
T ss_dssp --HHHSTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred --HhcCCCCCCcCHHHHHHHHHHHhCC---ccCCCcCcEEEECCCc
Confidence 1122345678899999999987752 1245779999999875
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=181.70 Aligned_cols=225 Identities=11% Similarity=0.089 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.... +... ...+.. .....++.++.+|+.|.+++.+++
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~~--~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 91 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER-LKSA--ADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 91 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence 456899999999999999999999999 499995543210 0000 000000 001346899999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++++++.. .+.+++|++||.+.+
T Consensus 92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~-------- 163 (303)
T 1yxm_A 92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-------- 163 (303)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc--------
Confidence 5 4899999999642 2234577899999999999998765 235689999998732
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC-CCcH---HHHHHHhcCCCceEEEcC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD-TQLV---PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~-~~~~---~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.+|...+.+.+.++.+ .|++++++|||.++|+.. .... +.+......
T Consensus 164 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~--------- 226 (303)
T 1yxm_A 164 --------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQ--------- 226 (303)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGG---------
T ss_pred --------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHh---------
Confidence 1123468999999999988877554 489999999999999842 1111 111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
......+.+++|+|++++.++.. ......|+.+++.++..++
T Consensus 227 ~~p~~~~~~~~dvA~~i~~l~~~---~~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 227 KIPAKRIGVPEEVSSVVCFLLSP---AASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp GSTTSSCBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred cCcccCCCCHHHHHHHHHHHhCc---ccccCCCcEEEECCCeecc
Confidence 11223478999999999988751 1234678999999986543
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-19 Score=174.23 Aligned_cols=225 Identities=13% Similarity=0.136 Sum_probs=160.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+.+|+++||||+|.||++++++|+++| ++|+++|+.... +... ...+.. ...++.++.+|+.|.+++.++++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEK-LEEA--KLEIEQ--FPGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHCC--STTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHH
Confidence 3567899999999999999999999999 489995554310 0000 000000 12468899999999998887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH-----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC-----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa-----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 77 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 148 (257)
T 3imf_A 77 IDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-------- 148 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc--------
Confidence 6899999999651 23456788999999999999988 344567999999987762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~----~~gl~~~ilRp~~v~G~~~~~~~---~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.||...+.+.+.++. .+|+++.+++||.+.++...... +.+.+.... .
T Consensus 149 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~---------~ 212 (257)
T 3imf_A 149 -------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQ---------S 212 (257)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHT---------T
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHh---------c
Confidence 123456899999999988887763 35899999999999987543211 111111111 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.+...+.+.+|+|++++.++.. ......|+.+++.+|..++
T Consensus 213 ~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 213 VPLGRLGTPEEIAGLAYYLCSD---EAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp STTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTSC
T ss_pred CCCCCCcCHHHHHHHHHHHcCc---hhcCccCCEEEECCCcccC
Confidence 2234578899999999987751 1234689999999987654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-20 Score=181.02 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++++||||+|+||++++++|+++| ++|+++|+.. ++. ..... ...++..+.+|+.|.+++.++++
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 76 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRDK--------AGAERVAGE-IGDAALAVAADISKEADVDAAVEA 76 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH-HCTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHH-hCCceEEEEecCCCHHHHHHHHHH
Confidence 356899999999999999999999999 5899955432 210 00001 12468899999999998887775
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC----C----CCEEEEecCccccccCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K----VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~----g----vkr~I~~SS~~vyg~~~~ 141 (586)
++|+|||+||... ...+++..+++|+.++.++.+++... + ..++|++||...+.
T Consensus 77 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---- 152 (261)
T 3n74_A 77 ALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---- 152 (261)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----
T ss_pred HHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----
Confidence 6899999999752 23346778999999999988877543 1 34799999987752
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|+..+.+.+.++.+ +|+++.+++|+.+.++............ ......+.
T Consensus 153 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~-----~~~~~~~~ 216 (261)
T 3n74_A 153 -----------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEE-----IRKKFRDS 216 (261)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHH-----HHHHHhhc
Confidence 1234567999999999998877654 6899999999999887543222110100 01112233
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCH
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKF 263 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~ 263 (586)
.+...+++++|+|++++.++.. ......|+++++.++..++.
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSP---QASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCC---cccCcCCcEEEecCCcccCC
Confidence 4445789999999999877641 13457899999999877654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-20 Score=183.60 Aligned_cols=222 Identities=13% Similarity=0.042 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+ |+||++++++|+++| ++|+++++.. +... ...+... ..+..++.+|+.|.+++.+++
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~-----~~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-----KLKGRVEEFAAQ--LGSDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST-----TTHHHHHHHHHH--TTCCCEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcH-----HHHHHHHHHHHh--cCCcEEEEccCCCHHHHHHHH
Confidence 456899999999 999999999999999 5899855432 0000 0000000 123478899999999988877
Q ss_pred c-------CCCEEEEcccCCC------------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~ 141 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---- 154 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER---- 154 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc----
Confidence 5 5799999999752 123457789999999999999997752 24899999987752
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g 216 (586)
+..+...|+.||...|.+.+.++.+ +|+++++++||.++++.... ..+.+......+.
T Consensus 155 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------ 217 (265)
T 1qsg_A 155 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVT------ 217 (265)
T ss_dssp -----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHS------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcC------
Confidence 1234568999999999998876543 58999999999999885432 1222333222211
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
....+.+++|+|++++.++.. ......|+.+++.++..++
T Consensus 218 ---p~~~~~~~~dva~~v~~l~s~---~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 218 ---PIRRTVTIEDVGNSAAFLCSD---LSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp ---TTSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGGGB
T ss_pred ---CCCCCCCHHHHHHHHHHHhCc---hhcCccCCEEEECCCcCCC
Confidence 123467899999999877651 1234578999999886543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=175.54 Aligned_cols=223 Identities=15% Similarity=0.062 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~-IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+++++||||+|+ ||++++++|+++| ++|++.|+.... +.. ....+ ......++.++.+|+.|.+++.++++
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~-~~~--~~~~l-~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERR-LGE--TRDQL-ADLGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHH-HTTCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHH-HHH--HHHHH-HhcCCCceEEEEeCCCCHHHHHHHHHH
Confidence 45689999999985 9999999999999 589996554310 000 00000 01123478999999999999887775
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~-----gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++.+++... +..++|++||...+.
T Consensus 95 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 166 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR-------- 166 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC--------
T ss_pred HHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC--------
Confidence 5799999999752 23346788999999999999987654 456899999987752
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+....... ..............
T Consensus 167 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--------~~~~~~~~~~~~~~ 231 (266)
T 3o38_A 167 -------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSS--------SELLDRLASDEAFG 231 (266)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-------------------------CCTTS
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCc--------HHHHHHHHhcCCcC
Confidence 2245678999999999998877653 68999999999998764322111 11111122233455
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 232 r~~~~~dva~~i~~l~s~---~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 232 RAAEPWEVAATIAFLASD---YSSYMTGEVVSVSSQR 265 (266)
T ss_dssp SCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESSCC
T ss_pred CCCCHHHHHHHHHHHcCc---cccCccCCEEEEcCCc
Confidence 678999999999987752 1245779999998864
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-19 Score=173.51 Aligned_cols=210 Identities=11% Similarity=0.123 Sum_probs=152.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
+|+|+||||+|+||++++++|+++|+. +|++.++.. ++. .....+ ...++.++.+|+.|.+++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 73 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--------ADLEKISLECRAEGALTDTITADISDMADV 73 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--------HHHHHHHHHHHTTTCEEEEEECCTTSHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH--------HHHHHHHHHHHccCCeeeEEEecCCCHHHH
Confidence 578999999999999999999999932 788854432 100 000000 124578899999999998
Q ss_pred HHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCC
Q 007866 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~ 140 (586)
.++++ ++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+.
T Consensus 74 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--- 150 (244)
T 2bd0_A 74 RRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK--- 150 (244)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC---
Confidence 88775 6999999999752 2235678899999999999998743 4678999999998863
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhc---CCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFAN---NIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~---~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...|.+.+.++ ...|++++++|||.++++....... .
T Consensus 151 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---------~------- 202 (244)
T 2bd0_A 151 ------------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD---------E------- 202 (244)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS---------T-------
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc---------c-------
Confidence 12345789999999999986654 3478999999999999985432100 0
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
. ...+++++|+|++++.++.. ......|+++...+++.+
T Consensus 203 -~-~~~~~~~~dva~~~~~l~~~---~~~~~~g~~~~~~~~~~~ 241 (244)
T 2bd0_A 203 -M-QALMMMPEDIAAPVVQAYLQ---PSRTVVEEIILRPTSGDI 241 (244)
T ss_dssp -T-GGGSBCHHHHHHHHHHHHTS---CTTEEEEEEEEEETTCCC
T ss_pred -c-cccCCCHHHHHHHHHHHHhC---CccccchheEEecccccc
Confidence 0 23689999999999988862 122344556666555544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-19 Score=175.80 Aligned_cols=237 Identities=14% Similarity=0.065 Sum_probs=163.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC----CCCCCC---C--CCCCCeEEEEccCCCHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES----NSLLPD---S--LSSGRAEYHQVDVRDIS 76 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~----~~~~~~---~--l~~~~~~~~~~Dl~d~~ 76 (586)
..+++++||||+|+||++++++|+++| ++|+++|+.... ..... ...... . -...++.++.+|+.|.+
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQI--ASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCC--TTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeccccc--ccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 457899999999999999999999999 599997765320 00000 000000 0 01246889999999999
Q ss_pred HHHHHhc-------CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCC
Q 007866 77 QIKKVLE-------GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~ 141 (586)
++.++++ ++|+|||+||... ...+++..+++|+.|+.++++++... + -.++|++||...+...
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 165 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGV-- 165 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCC--
Confidence 9888776 6899999999863 23457889999999999999987442 2 4689999999876321
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-HHHH-HHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-PLLV-NLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-~~l~-~~~~~g~~~~i~g 216 (586)
.. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++...... .... ............+
T Consensus 166 -----~~----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (278)
T 3sx2_A 166 -----GS----ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAMG 236 (278)
T ss_dssp -----CC----SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTTS
T ss_pred -----cc----CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhhh
Confidence 00 1134568999999999988877543 5799999999999988654321 1111 1111111111223
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..+ ..+.+++|+|++++.++.. ......|+++++.+|..
T Consensus 237 ~~~p-~~~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 237 NAMP-VEVLAPEDVANAVAWLVSD---QARYITGVTLPVDAGFL 276 (278)
T ss_dssp CSSS-CSSBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTT
T ss_pred hhcC-cCcCCHHHHHHHHHHHhCc---ccccccCCEEeECCCcc
Confidence 3334 6788999999999877641 12457899999988753
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=176.52 Aligned_cols=227 Identities=18% Similarity=0.109 Sum_probs=163.0
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~ 77 (586)
|.+....+|+++||||+|+||++++++|+++| ++|++.| |+.++. .....+ ...++.++.+|+.|.++
T Consensus 1 M~m~~l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~--------r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 71 (280)
T 3tox_A 1 MVMSRLEGKIAIVTGASSGIGRAAALLFAREG-AKVVVTA--------RNGNALAELTDEIAGGGGEAAALAGDVGDEAL 71 (280)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECC--------SCHHHHHHHHHHHTTTTCCEEECCCCTTCHHH
T ss_pred CCccCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE--------CCHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence 54455668999999999999999999999999 5999944 432210 000001 13468889999999998
Q ss_pred HHHHhc-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCcccccc
Q 007866 78 IKKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFD 138 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~ 138 (586)
+.++++ ++|++||+||... ...+++..+++|+.|+.++.+++.. .+-.++|++||...+..
T Consensus 72 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 151 (280)
T 3tox_A 72 HEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA 151 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC
Confidence 887775 6899999999651 2345778999999999999988753 45569999999877521
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC----cHHHHHHHhcCCCc
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ----LVPLLVNLAKPGWT 211 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~----~~~~l~~~~~~g~~ 211 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... ..+.........
T Consensus 152 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-- 215 (280)
T 3tox_A 152 --------------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGL-- 215 (280)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTT--
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhcc--
Confidence 1244678999999999998877543 58999999999999875322 112222222222
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.....+.+++|+|++++.++.. ......|+++++.+|..++
T Consensus 216 -------~p~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~~~~ 256 (280)
T 3tox_A 216 -------HALKRIARPEEIAEAALYLASD---GASFVTGAALLADGGASVT 256 (280)
T ss_dssp -------STTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred -------CccCCCcCHHHHHHHHHHHhCc---cccCCcCcEEEECCCcccc
Confidence 2234578899999999987751 1245779999999986544
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=181.35 Aligned_cols=220 Identities=15% Similarity=0.063 Sum_probs=159.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|+||++++++|+++| ++|++.|+.. ........+ ...++..+.+|+.|.+++.++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRTD--------GVKEVADEIADGGGSAEAVVADLADLEGAANVAE 99 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCHH--------HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 456899999999999999999999999 5898865321 100000000 13468899999999988876654
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 100 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 170 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ--------- 170 (273)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC---------
Confidence 6899999999862 23356789999999999999977 345677999999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++..... .+......... .+.
T Consensus 171 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p~ 235 (273)
T 3uf0_A 171 ------GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITAR---------IPA 235 (273)
T ss_dssp ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHH---------STT
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhc---------CCC
Confidence 2234578999999999998887654 689999999999998743211 11111211111 123
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+++|+|++++.++.. ......|+++++.+|..+
T Consensus 236 ~r~~~pedva~~v~~L~s~---~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 236 GRWATPEDMVGPAVFLASD---AASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp SSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHhCc---hhcCCcCCEEEECcCccC
Confidence 4577899999999987751 124578999999987643
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=176.30 Aligned_cols=203 Identities=13% Similarity=0.035 Sum_probs=154.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++|+|+||||+|+||++++++|+++| ++|+++| |+..+. ....+.+|+.|.+++.++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~--------r~~~~~---------~~~~~~~d~~d~~~v~~~~~~~~ 82 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKS-WNTISID--------FRENPN---------ADHSFTIKDSGEEEIKSVIEKIN 82 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE--------SSCCTT---------SSEEEECSCSSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEe--------CCcccc---------cccceEEEeCCHHHHHHHHHHHH
Confidence 56899999999999999999999999 5899954 433311 12467899999998887775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|+|||+||... ...+++..+++|+.|+.++++++...-. .++|++||...+.
T Consensus 83 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (251)
T 3orf_A 83 SKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------ 150 (251)
T ss_dssp TTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred HHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------
Confidence 3699999999641 1334678899999999999999877522 4899999998762
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+.++. ...... ......+
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~--------~~~~~~---------~~~~~~~ 210 (251)
T 3orf_A 151 ---RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT--------NRKYMS---------DANFDDW 210 (251)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH--------HHHHCT---------TSCGGGS
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc--------hhhhcc---------ccccccc
Confidence 2245678999999999999988776 57999999999987542 222221 1234568
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
++.+|+|++++.++... ......|+.+++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~--~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNS--DSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCc--cccCCcceEEEEecCCcc
Confidence 89999999999988721 124578999999877654
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-19 Score=173.51 Aligned_cols=212 Identities=14% Similarity=0.075 Sum_probs=151.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+++|+|+||||+|+||++++++|+++| ++|++. .|++++ . ..+..+.+|+.|++++.++++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~--------~r~~~~--~------~~~~~~~~Dl~d~~~v~~~~~~~ 81 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAG-DKVAIT--------YRSGEP--P------EGFLAVKCDITDTEQVEQAYKEI 81 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE--------ESSSCC--C------TTSEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEE--------eCChHh--h------ccceEEEecCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599984 443321 1 237889999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+.+++|++||...+..
T Consensus 82 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------- 152 (253)
T 2nm0_A 82 EETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG--------- 152 (253)
T ss_dssp HHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC---------
Confidence 3799999999752 3456789999999999999887654 46789999999876521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
..+...|+.+|...|.+.+.++. ..|+++++++||.+..+......+......... .....+
T Consensus 153 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~~~~ 217 (253)
T 2nm0_A 153 ------SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQ---------VPLGRY 217 (253)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHTT---------CTTCSC
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhc---------CCCCCC
Confidence 12346899999999988877643 368999999999987664221111111111111 122347
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
++.+|+|++++.++.. ......|+.+.+.++..+
T Consensus 218 ~~p~dvA~~i~~l~s~---~~~~~tG~~i~vdGG~~~ 251 (253)
T 2nm0_A 218 ARPEEIAATVRFLASD---DASYITGAVIPVDGGLGM 251 (253)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTC
T ss_pred cCHHHHHHHHHHHhCc---cccCCcCcEEEECCcccc
Confidence 8999999999987751 123467899999887543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=173.65 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++. ++++. .....+ ...++.++.+|+.|.+++.++++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~-------~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAG-------NEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVK 74 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESS-------CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC-------CHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 489885441 11100 000000 12467889999999999888776
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+.+++|++||...+..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 147 (246)
T 2uvd_A 75 QTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG------- 147 (246)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC-------
Confidence 6999999999752 22346788999999977766655 4457789999999876531
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..+...|+.||...+.+.+.++. .+|+++++++||.+.++......+......... .+..
T Consensus 148 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---------~p~~ 210 (246)
T 2uvd_A 148 --------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKL---------IPAA 210 (246)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHT---------CTTC
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhc---------CCCC
Confidence 12456899999998888776643 258999999999998875332211111111111 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+++.+|+|++++.++.. ......|+.+++.++.
T Consensus 211 ~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 211 QFGEAQDIANAVTFFASD---QSKYITGQTLNVDGGM 244 (246)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHcCc---hhcCCCCCEEEECcCc
Confidence 478999999999987751 1234678999998874
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=179.14 Aligned_cols=219 Identities=11% Similarity=0.032 Sum_probs=153.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++..+.+|+.|.+++.+++
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 89 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNE--------KELDECLEIWREKGLNVEGSVCDLLSRTERDKLM 89 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 346899999999999999999999999 5999955432 100 000000 1246888999999999888776
Q ss_pred --------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 83 --------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 --------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
.++|+|||+||... ...+++..+++|+.++.++.+++. +.+.+++|++||...+..
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~----- 164 (273)
T 1ae1_A 90 QTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA----- 164 (273)
T ss_dssp HHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC-----
T ss_pred HHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC-----
Confidence 46899999999752 223567788999999999999874 456789999999988731
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH------HHHHHhcCCCceEE
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKFI 214 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~------~l~~~~~~g~~~~i 214 (586)
..+...|+.||...|.+.+.++.+ +|+++++++||.++++....... .........
T Consensus 165 ----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----- 229 (273)
T 1ae1_A 165 ----------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVK----- 229 (273)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHH-----
T ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhc-----
Confidence 134568999999999998877543 58999999999999885332111 111111111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+.+.+|+|++++.++.. ......|+++++.++..
T Consensus 230 ----~p~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 230 ----TPMGRAGKPQEVSALIAFLCFP---AASYITGQIIWADGGFT 268 (273)
T ss_dssp ----STTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCc---cccCcCCCEEEECCCcc
Confidence 1123478899999999877641 12346789999988753
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=179.38 Aligned_cols=219 Identities=14% Similarity=0.071 Sum_probs=150.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++|+||||+|+||++++++|+++| ++|.+.+ .|..+.. .....+ ...++.++.+|+.|.+++.++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 96 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNY-------AANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFS 96 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE-------SSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEc-------CCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46789999999999999999999999 5887632 2221100 000000 12468899999999998887775
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC-------CCCEEEEecCccccccCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~-------gvkr~I~~SS~~vyg~~~~ 141 (586)
++|+|||+||... ...+++..+++|+.|+.++++++... +..++|++||...+...
T Consensus 97 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 174 (272)
T 4e3z_A 97 AVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS-- 174 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC--
T ss_pred HHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC--
Confidence 6899999999762 23346788999999999999887654 34689999998876321
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~ 217 (586)
..+...|+.||+..|.+.+.++.+ .|+++++++||.+.++.... ..+...... ..
T Consensus 175 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~---------~~ 233 (272)
T 4e3z_A 175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREM---------AP 233 (272)
T ss_dssp ------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------
T ss_pred ------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHH---------hh
Confidence 123457999999999988777543 48999999999999875332 111111111 11
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+.+++|+|++++.++.. ......|++|++.+|.
T Consensus 234 ~~~~~~~~~~edvA~~i~~l~s~---~~~~~tG~~i~vdgG~ 272 (272)
T 4e3z_A 234 SVPMQRAGMPEEVADAILYLLSP---SASYVTGSILNVSGGR 272 (272)
T ss_dssp CCTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred cCCcCCCcCHHHHHHHHHHHhCC---ccccccCCEEeecCCC
Confidence 22334567899999999988752 1244679999998863
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=174.74 Aligned_cols=201 Identities=12% Similarity=0.045 Sum_probs=153.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|.++| ++|.+. .|... +|+.|++++.++++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~--------~r~~~-----------------~D~~~~~~v~~~~~~~ 57 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEH-TIVHVA--------SRQTG-----------------LDISDEKSVYHYFETI 57 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEE--------SGGGT-----------------CCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEe--------cCCcc-----------------cCCCCHHHHHHHHHHh
Confidence 356899999999999999999999999 599984 43321 79999999988875
Q ss_pred -CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCCCCCccc
Q 007866 84 -GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 84 -~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
++|++||+||... ...+++..+++|+.++.++.+++...-. .++|++||...+.
T Consensus 58 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 122 (223)
T 3uce_A 58 GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK--------------- 122 (223)
T ss_dssp CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc---------------
Confidence 6899999999751 2334677899999999999999977522 3899999998763
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCCCC-ceEEEEeCCCcccCCCCCcHHH----HHHHhcCCCceEEEcCCCccccccch
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNIDG-LLTCALRPSNVFGPGDTQLVPL----LVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~~g-l~~~ilRp~~v~G~~~~~~~~~----l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+..+...|+.+|...|.+.+.++.+.+ +++.+++||.+.++......+. +.+..... .+...+.++
T Consensus 123 ~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 193 (223)
T 3uce_A 123 VVANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSH---------LPVGKVGEA 193 (223)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHH---------STTCSCBCH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhc---------CCCCCccCH
Confidence 224567899999999999888866533 9999999999998754332222 12222221 223457789
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+|+|++++.+++ .+...|+++++.+|..+
T Consensus 194 ~dvA~~~~~l~~-----~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 194 SDIAMAYLFAIQ-----NSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHHH-----CTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcc-----CCCCCCcEEEecCCeec
Confidence 999999998887 46678999999987644
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-19 Score=175.18 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=157.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~-~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||+|+||++++++|++ .| ++|.+.|+.. .. ....+.++.+|+.|.+++.++++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~--------~~-------~~~~~~~~~~Dv~~~~~v~~~~~~~ 66 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQ--------SF-------SAENLKFIKADLTKQQDITNVLDII 66 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSC--------CC-------CCTTEEEEECCTTCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccc--------cc-------ccccceEEecCcCCHHHHHHHHHHH
Confidence 468999999999999999999999 67 5888854432 20 12357899999999999988876
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++|++||+||... ...+++..+++|+.|+.++++++...-. .++|++||...+.
T Consensus 67 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 132 (244)
T 4e4y_A 67 KNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-------------- 132 (244)
T ss_dssp TTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC--------------
T ss_pred HhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc--------------
Confidence 6899999999851 2345678899999999999999876532 3899999998762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCC--CceEEEcCCCccccccc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG--WTKFIIGSGENMSDFTY 226 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g--~~~~i~g~g~~~~~~i~ 226 (586)
+..+...|+.||+..|.+.+.++. .+|+++.+++||.+.++................ ..........+...+.+
T Consensus 133 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 211 (244)
T 4e4y_A 133 -AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQ 211 (244)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBC
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcC
Confidence 123456899999999999987764 368999999999998763221111110000000 00000112233456788
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++|+|++++.++.. ......|+.+++.+|..
T Consensus 212 p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 212 PQEIAELVIFLLSD---KSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp HHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhcC---ccccccCCeEeECCCcc
Confidence 99999999988752 12456799999988753
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=177.76 Aligned_cols=217 Identities=16% Similarity=0.092 Sum_probs=156.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+++++||||+|+||++++++|+++| ++|++.++.. +. .... ...++.++.+|+.|.+++.++++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~--~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIRG--------ED--VVAD-LGDRARFAAADVTDEAAVASALDLA 74 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSC--------HH--HHHH-TCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCch--------HH--HHHh-cCCceEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5999855421 10 0011 13468999999999999888776
Q ss_pred ----CCCEEEEcccCC-----------CCCCChhHHHHHHHHHHHHHHHHHHhC------------CCCEEEEecCcccc
Q 007866 84 ----GASTVFYVDATD-----------LNTDDFYNCYMIIVQGAKNVVTACREC------------KVRRLVYNSTADVV 136 (586)
Q Consensus 84 ----~~D~Vih~aa~~-----------~~~~~~~~~~~~Nv~gt~~lleaa~~~------------gvkr~I~~SS~~vy 136 (586)
++|++||+||.. ....+++..+++|+.++.++.+++... +-.++|++||...+
T Consensus 75 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tl3_A 75 ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF 154 (257)
T ss_dssp HHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred HHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence 789999999974 123457889999999999999988753 23489999999876
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE
Q 007866 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (586)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~ 213 (586)
. +..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+......+..........+.
T Consensus 155 ~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~- 218 (257)
T 3tl3_A 155 D---------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQVPH- 218 (257)
T ss_dssp C---------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTSSS-
T ss_pred C---------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcCCC-
Confidence 2 1123568999999988887766543 58999999999998876443333333322222110
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
...+.+.+|+|++++.+++ .+...|+++++.+|..++
T Consensus 219 -------~~r~~~p~dva~~v~~l~s-----~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 -------PSRLGNPDEYGALAVHIIE-----NPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp -------SCSCBCHHHHHHHHHHHHH-----CTTCCSCEEEESTTC---
T ss_pred -------CCCccCHHHHHHHHHHHhc-----CCCCCCCEEEECCCccCC
Confidence 1347789999999998887 467889999999886544
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=174.84 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=149.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC-CHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR-DISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~-d~~~l~~~l~~ 84 (586)
..+|+|+||||+|+||++++++|+++| ++|+++++. ++. .. .+ .++..+ +|+. +.+.+.+.+.+
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~--------~~~--~~-~~--~~~~~~-~D~~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARN--------EEL--LK-RS--GHRYVV-CDLRKDLDLLFEKVKE 81 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESC--------HHH--HH-HT--CSEEEE-CCTTTCHHHHHHHSCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC--------HHH--HH-hh--CCeEEE-eeHHHHHHHHHHHhcC
Confidence 467899999999999999999999999 599995543 210 10 11 245666 9993 34444445558
Q ss_pred CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHH----HHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVV----TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~ll----eaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
+|+|||+||... ...+++..+++|+.|+.++. +.+++.+.+++|++||...+..
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 146 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP--------------- 146 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCC---------------
Confidence 999999999752 22346788899999977664 4555667889999999988731
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHH-HhcCCCceEEEcCCCccccccchhH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVN-LAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~-~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
..+...|+.+|...+.+.+.++.+ +|++++++|||.+.++......+.... ..... .....+.+++|
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~d 217 (249)
T 1o5i_A 147 IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQ---------IPMRRMAKPEE 217 (249)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTT---------STTSSCBCHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhc---------CCCCCCcCHHH
Confidence 234578999999999988776543 689999999999998753211111111 12111 12245789999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+|++++.++.. ......|+.+++.++..
T Consensus 218 vA~~i~~l~s~---~~~~~tG~~~~vdgG~~ 245 (249)
T 1o5i_A 218 IASVVAFLCSE---KASYLTGQTIVVDGGLS 245 (249)
T ss_dssp HHHHHHHHHSG---GGTTCCSCEEEESTTCC
T ss_pred HHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 99999887751 12346689999988753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.6e-19 Score=177.16 Aligned_cols=224 Identities=12% Similarity=0.080 Sum_probs=160.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|++.++........... ... -...++.++.+|+.|.+++.++++
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQ--YVE--KEGVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--TTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHH--HHH--hcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 5898865543100000000 000 013468899999999998887775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|++||+||... ...+++..+++|+.|+.++++++... .-.++|++||...+..
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------- 189 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG---------- 189 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC----------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC----------
Confidence 6899999999752 23456889999999999999999875 2359999999988732
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
..+...|+.||...|.+.+.++.+ +|+++.+++||.+.++.... .-....... ....+...+
T Consensus 190 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~---------~~~~p~~r~ 255 (291)
T 3ijr_A 190 -----NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQF---------GSNVPMQRP 255 (291)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHT---------TTTSTTSSC
T ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHH---------HccCCCCCC
Confidence 234568999999999998877643 48999999999998863210 001111111 223344567
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 256 ~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 256 GQPYELAPAYVYLASS---DSSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp BCGGGTHHHHHHHHSG---GGTTCCSCEEEESSSCCC
T ss_pred cCHHHHHHHHHHHhCC---ccCCCcCCEEEECCCccc
Confidence 8899999999987751 124577999999887543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=180.40 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=163.1
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
|.+....+|+++||||+|+||++++++|+++| ++|.+.|+.. +.. .....+ ..++..+.+|+.|.+++.
T Consensus 1 M~m~~l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~ 70 (255)
T 4eso_A 1 MVMGNYQGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNE--------SNIARIREEF-GPRVHALRSDIADLNEIA 70 (255)
T ss_dssp ---CTTTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-GGGEEEEECCTTCHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-CCcceEEEccCCCHHHHH
Confidence 44445667999999999999999999999999 5999955432 210 000001 246889999999998887
Q ss_pred HHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCC
Q 007866 80 KVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++++ ++|++||+||... ...+++..+++|+.|+.++.+++... .-.++|++||...+.
T Consensus 71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------ 144 (255)
T 4eso_A 71 VLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------ 144 (255)
T ss_dssp HHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------
Confidence 6654 6899999999862 33456788999999999999998764 224899999998763
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHH----HHHHHhcCCCceEE
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVP----LLVNLAKPGWTKFI 214 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~----~l~~~~~~g~~~~i 214 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++.... ... .+.......
T Consensus 145 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~----- 210 (255)
T 4eso_A 145 ---------GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNI----- 210 (255)
T ss_dssp ---------BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHH-----
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhcc-----
Confidence 1235678999999999988877553 48999999999999875321 111 111111111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHH
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~e 265 (586)
.+...+.+.+|+|++++.++.. .....|+.+++.+|...++.+
T Consensus 211 ----~p~~r~~~pedvA~~v~~L~s~----~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 211 ----TPMKRNGTADEVARAVLFLAFE----ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHHT----CTTCCSCEEEESTTTTTTBCC
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCc----CcCccCCEEEECCCccccCcC
Confidence 2234567899999999877651 345779999999987766543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=172.20 Aligned_cols=233 Identities=13% Similarity=0.020 Sum_probs=159.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-----cCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-----LDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-----l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~ 77 (586)
..+++++||||+|+||++++++|+++| ++|+++|+..... ..|+.++. ..... -...++..+.+|+.|.++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 456899999999999999999999999 5999977642100 00011000 00000 013468889999999999
Q ss_pred HHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCcccccc
Q 007866 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFD 138 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~ 138 (586)
+.++++ ++|++||+||... ...+++..+++|+.|+.++++++.. .+ -.++|++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 887775 6899999999862 2345677899999999999998743 33 56899999988762
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHh-cCCCceE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLA-KPGWTKF 213 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~-~~g~~~~ 213 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++.... ......... .......
T Consensus 171 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 236 (280)
T 3pgx_A 171 --------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFP 236 (280)
T ss_dssp --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSC
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhh
Confidence 1234578999999999998877654 68999999999999886542 111111111 0001111
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
. ....+. .+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 237 ~-~~~~~~-r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 237 P-MPVQPN-GFMTADEVADVVAWLAGD---GSGTLTGTQIPVDKGA 277 (280)
T ss_dssp C-BTTBCS-SCBCHHHHHHHHHHHHSG---GGTTCSSCEEEESTTG
T ss_pred h-cccCCC-CCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 1 112223 388999999999987751 1234679999998864
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=180.97 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+|+||++++++|+++| ++|.+.++.... + ........ -...++.++.+|+.|.+++.++++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEE---E--DAQQVKALIEECGRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGH---H--HHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcch---h--HHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 356899999999999999999999999 588885543210 0 00000000 013468889999999988877764
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhCCCC--EEEEecCccccccCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~gvk--r~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++++++...-.+ ++|++||...+..
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~-------- 192 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQP-------- 192 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSC--------
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccC--------
Confidence 6899999999752 23346889999999999999999876444 9999999988731
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC--CCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~--~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
..+...|+.||+..|.+.+.++.+ .|+++.+++||.+.++.. ......... ........
T Consensus 193 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~---------~~~~~~p~ 256 (294)
T 3r3s_A 193 -------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIP---------QFGQQTPM 256 (294)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGST---------TTTTTSTT
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHH---------HHHhcCCC
Confidence 234568999999999998877543 489999999999987631 000111111 11222334
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+...+|+|++++.++.. ......|+++++.+|..+
T Consensus 257 ~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 257 KRAGQPAELAPVYVYLASQ---ESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp SSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTCCC
T ss_pred CCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccC
Confidence 5578899999999877741 134577999999998654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=176.08 Aligned_cols=230 Identities=16% Similarity=0.119 Sum_probs=155.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+|+++||||+|+||++++++|+++| ++|++.++..... .. ......+ ...++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~--~~---~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEE--QA---AETIKLIEAADQKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHH--HH---HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchH--HH---HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 5899999999999999999999999 5899855432100 00 0000000 12468899999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCC-CEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKV-RRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gv-kr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.|+.++++++.. .+. +++|++||...+.
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 146 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------- 146 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc---------
Confidence 7999999999752 2235678899999999999988765 366 7999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC--CCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--GWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~--g~~~~i~g~g~~~ 221 (586)
+..+...|+.||...|.+.+.++.+ +|+++.+++||.+..+........+...... ...........+.
T Consensus 147 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 220 (258)
T 3a28_C 147 ------GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIAL 220 (258)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCTT
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCCC
Confidence 1234568999999999988877542 5899999999999765211101000000000 0000000111122
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+.+|+|++++.++.. ......|+.+++.++..+
T Consensus 221 ~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 221 GRPSVPEDVAGLVSFLASE---NSNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSCC
T ss_pred CCccCHHHHHHHHHHHhCc---ccCCCCCCEEEECCCEec
Confidence 3478899999999987751 123467899999887543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=182.93 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=126.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++.. ..|..+.. .+.... ...++..+.+|++|.+++.++++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~---~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~ 79 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDI---VGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAID 79 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCT---TTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcc---cccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHH
Confidence 46899999999999999999999999 5998854432 12221100 000000 12468999999999999888876
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+.+++|++||.+.++..
T Consensus 80 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~------ 153 (324)
T 3u9l_A 80 QIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT------ 153 (324)
T ss_dssp HHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC------
Confidence 7999999999751 23456778999999999999988 66678899999999876311
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPG 194 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~ 194 (586)
......|+.||...|.+.+.++.+ +|+++++++||.+.++.
T Consensus 154 --------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 154 --------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp --------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred --------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 123467999999999998887654 69999999999998653
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=174.76 Aligned_cols=212 Identities=16% Similarity=0.126 Sum_probs=151.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh-----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL----- 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l----- 82 (586)
+|+++||||+|+||++++++|+++| ++|+++++. +++ ..+.+ ++..+.+|+.| +++.+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~--------~~~--~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRN--------PEE--AAQSL---GAVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------CHH--HHHHH---TCEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCC--------HHH--HHHhh---CcEEEecCCch-HHHHHHHHHHHH
Confidence 5799999999999999999999999 599995443 221 11111 26788999998 6665544
Q ss_pred --cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 83 --EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 83 --~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
.++|+|||+||... ...+++..+++|+.++.++.+++. +.+.+++|++||...+...
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 136 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG---------- 136 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC----------
Confidence 36999999999752 223567889999999999988873 4577899999999887321
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
...+...|+.||...|.+.+.++.+ +|++++++|||.+.++...... +.+....... .+...+
T Consensus 137 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---------~p~~~~ 204 (239)
T 2ekp_A 137 ---GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITAR---------IPMGRW 204 (239)
T ss_dssp ---TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTT---------CTTSSC
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhc---------CCCCCC
Confidence 0134578999999999988877543 4899999999999876422110 1122222221 122347
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 205 ~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGD---EAEYLTGQAVAVDGGF 236 (239)
T ss_dssp BCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCc---hhcCCCCCEEEECCCc
Confidence 8899999999877641 1234678999998874
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-19 Score=173.78 Aligned_cols=228 Identities=12% Similarity=0.015 Sum_probs=153.3
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~ 77 (586)
|++....+++++||||+|+||++++++|+++| ++|.+.+. |..... ..... -...++..+.+|+.|.++
T Consensus 1 M~~~~l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 72 (259)
T 3edm_A 1 MSLQRFTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYN-------GAAEGAATAVAEIEKLGRSALAIKADLTNAAE 72 (259)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC-------SSCHHHHHHHHHHHTTTSCCEEEECCTTCHHH
T ss_pred CCccCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 65556678999999999999999999999999 48887422 111100 00000 013468899999999999
Q ss_pred HHHHhc-------CCCEEEEcccCC-C-------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCC
Q 007866 78 IKKVLE-------GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGS 140 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~ 140 (586)
+.++++ ++|++||+||.. . ...+++..+++|+.|+.++.+++...-. .++|++||...+..
T Consensus 73 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 150 (259)
T 3edm_A 73 VEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-- 150 (259)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--
Confidence 888775 689999999864 1 1223578899999999999999987643 38999999987621
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||+..+.+.+.++.+. ++++.++.||.+..+...... +.... ....
T Consensus 151 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~---------~~~~ 209 (259)
T 3edm_A 151 ------------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRE---------RVAG 209 (259)
T ss_dssp ------------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------
T ss_pred ------------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHHH---------HHHh
Confidence 12345689999999999988775432 399999999999876433221 11111 1122
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+...+.+++|+|++++.++.. ......|+.+++.++...+
T Consensus 210 ~~p~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 210 ATSLKREGSSEDVAGLVAFLASD---DAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp -----CCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESBCSSBC
T ss_pred cCCCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEECCCcCCC
Confidence 23445677899999999877751 1235679999998876544
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=174.18 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=165.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCC---CC--CCCCCeEEEEccCCCH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLP---DS--LSSGRAEYHQVDVRDI 75 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~---~~--l~~~~~~~~~~Dl~d~ 75 (586)
...+++++||||+|+||++++++|+++| ++|+++|+... ..+..... ... .. ....++.++.+|+.|.
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHD--IETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR 83 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSC--CTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEccccc--ccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 3457899999999999999999999999 59999776532 11100000 000 00 0134688999999999
Q ss_pred HHHHHHhc-------CCCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCC
Q 007866 76 SQIKKVLE-------GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 76 ~~l~~~l~-------~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~ 141 (586)
+++.++++ ++|+|||+||... ...+++..+++|+.|+.++++++... +-.++|++||...+.....
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~ 163 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ 163 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc
Confidence 99887775 6899999999862 24567889999999999999999775 3359999999988743211
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC----Cc---
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG----WT--- 211 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g----~~--- 211 (586)
.+..|.. +..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++....... ....... ..
T Consensus 164 --~~~~~~~--~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~~ 237 (287)
T 3pxx_A 164 --PPGAGGP--QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM--YRQFRPDLEAPSRADA 237 (287)
T ss_dssp --CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHH--HHHHCTTSSSCCHHHH
T ss_pred --ccccccc--CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccch--hhhhccccccchhHHH
Confidence 1222322 2234568999999999998877654 48999999999999876432110 0111100 00
Q ss_pred -eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 212 -KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 212 -~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
............+.+++|+|++++.++.. ......|+++++.+|..++
T Consensus 238 ~~~~~~~~~~~~~~~~p~dva~~v~fL~s~---~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 238 LLAFPAMQAMPTPYVEASDISNAVCFLASD---ESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp HHHGGGGCSSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGG
T ss_pred HhhhhhhcccCCCCCCHHHHHhhHheecch---hhcCCCCceEeECchhhhc
Confidence 00001111125788999999999977741 1245779999999986543
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=176.69 Aligned_cols=221 Identities=13% Similarity=0.039 Sum_probs=158.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++||||||+|+||++++++|+++| ++|.+.+... .... ..... -...++..+.+|+.|.+++.+++
T Consensus 11 ~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 82 (256)
T 3ezl_A 11 MSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPN-------SPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAF 82 (256)
T ss_dssp --CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTT-------CSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCC-------HHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHH
Confidence 457899999999999999999999999 5888754221 1100 00000 01346889999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 83 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 155 (256)
T 3ezl_A 83 DKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK------- 155 (256)
T ss_dssp HHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-------
T ss_pred HHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-------
Confidence 5 5799999999762 23456789999999988887765 455678999999987763
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+.++......+.......... ..
T Consensus 156 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------~~ 218 (256)
T 3ezl_A 156 --------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI---------PV 218 (256)
T ss_dssp --------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHS---------TT
T ss_pred --------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcC---------CC
Confidence 2245678999999988888776543 689999999999987643333333333332222 22
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 219 ~~~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 219 RRLGSPDEIGSIVAWLASE---ESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSCC
T ss_pred CCCcCHHHHHHHHHHHhCC---cccCCcCcEEEECCCEeC
Confidence 3567899999999877741 134577999999987643
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=177.97 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=152.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+ ++++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r--------~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 73 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDI--------NEAAGQQLAAEL-GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECS--------CHHHHHHHHHHH-CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeC--------CHHHHHHHHHHc-CCceEEEEccCCCHHHHHHHHHH
Confidence 467899999999999999999999999 59999544 32210 000011 2468889999999998877765
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.++.++.++ +++.+ +++|++||...+.
T Consensus 74 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 143 (253)
T 1hxh_A 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWL--------- 143 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS---------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcC---------
Confidence 4799999999752 1234678899999877766654 44567 8999999998763
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---C--CceEEEEeCCCcccCCCCCcH-HHHHHH-hcCCCceEEEcCCC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---D--GLLTCALRPSNVFGPGDTQLV-PLLVNL-AKPGWTKFIIGSGE 219 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~--gl~~~ilRp~~v~G~~~~~~~-~~l~~~-~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||...|.+.+.++.+ + |++++++||+.++++...... +..... ..... ...
T Consensus 144 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------~~~ 211 (253)
T 1hxh_A 144 ------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDP------KLN 211 (253)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBT------TTB
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhh------ccC
Confidence 1234568999999999998887653 3 899999999999986321000 000000 11100 011
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 212 p~~~~~~~~dvA~~~~~l~s~---~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 212 RAGRAYMPERIAQLVLFLASD---ESSVMSGSELHADNSI 248 (253)
T ss_dssp TTCCEECHHHHHHHHHHHHSG---GGTTCCSCEEEESSSC
T ss_pred ccCCCCCHHHHHHHHHHHcCc---cccCCCCcEEEECCCc
Confidence 223578899999999987751 1234678999998874
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=177.10 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=154.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+|+++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++..+.+|+.|.+++.++
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~ 89 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNL--------EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKL 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 457899999999999999999999999 5999955432 110 000000 123578899999999988877
Q ss_pred hc-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccc-cccCCCC
Q 007866 82 LE-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADV-VFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~v-yg~~~~~ 142 (586)
++ ++|+|||+||.... ..+++..+++|+.|+.++++++. +.+.+++|++||..+ +.
T Consensus 90 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----- 164 (267)
T 1vl8_A 90 LEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV----- 164 (267)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc-----
Confidence 75 68999999997621 23457788999999999988774 456789999999873 21
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...|.+.+.++.+ +|+++++++||.+.++...... +.........
T Consensus 165 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 226 (267)
T 1vl8_A 165 ----------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKR-------- 226 (267)
T ss_dssp ----------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHT--------
T ss_pred ----------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhh--------
Confidence 1234568999999999998877543 5899999999999876432111 1111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.....+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 227 -~p~~~~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 227 -IPLGRTGVPEDLKGVAVFLASE---EAKYVTGQIIFVDGGW 264 (267)
T ss_dssp -CTTSSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred -CCCCCCcCHHHHHHHHHHHcCc---cccCCcCCeEEECCCC
Confidence 1123478899999999987751 1234678999998864
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=171.93 Aligned_cols=214 Identities=13% Similarity=0.035 Sum_probs=153.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ++.++.+|+.|.+++.++++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~ 71 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEE--------GPLREAAEAV---GAHPVVMDVADPASVERGFAEA 71 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTT---TCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHc---CCEEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 5999854432 210 000111 37889999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+.+++|++||...++
T Consensus 72 ~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------- 141 (245)
T 1uls_A 72 LAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG---------- 141 (245)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC----------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC----------
Confidence 4899999999752 1234678899999999999887754 3678999999998331
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
..+...|+.+|...+.+.+.++.+ .|+++++++||.+..+......+.......... +...+
T Consensus 142 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~ 206 (245)
T 1uls_A 142 ------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAAT---------PLGRA 206 (245)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTC---------TTCSC
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhC---------CCCCC
Confidence 123468999999998887776432 589999999999987754332222222221111 11236
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSD---ESSFITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCc---hhcCCcCCEEEECCCcc
Confidence 7899999999987751 12346789999988753
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=175.96 Aligned_cols=220 Identities=13% Similarity=0.088 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|++.++.. +.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 96 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTE--------AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALV 96 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHH
Confidence 356899999999999999999999999 4999855432 100 000000 1236788999999999888777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++.. .+-.++|++||...+.
T Consensus 97 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------- 169 (270)
T 3ftp_A 97 ESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA------- 169 (270)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-------
Confidence 5 6899999999752 2345678899999999999998753 3556899999988763
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++................ .+.
T Consensus 170 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---------~p~ 232 (270)
T 3ftp_A 170 --------GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQ---------IPL 232 (270)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTT---------CTT
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhc---------CCC
Confidence 1234578999999888888776543 58999999999998653221112222222222 233
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 233 ~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASP---QAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSSC
T ss_pred CCCCCHHHHHHHHHHHhCC---CcCCccCcEEEECCCccc
Confidence 4578899999999877641 134568999999988654
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=176.15 Aligned_cols=220 Identities=12% Similarity=0.012 Sum_probs=156.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++|+||||+|+||++++++|+++| ++|++.++.... . .......+ ...++.++.+|+.|.+++.++++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~---~---~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 99 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAE---V---ADALKNELEEKGYKAAVIKFDAASESDFIEAIQ 99 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHH---H---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHH---H---HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 356899999999999999999999999 589885442110 0 00000000 13468899999999998887775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+..++|++||...+.
T Consensus 100 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------- 171 (271)
T 4iin_A 100 TIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER-------- 171 (271)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC--------
Confidence 6899999999862 2245678899999999998887643 4667999999987762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.+|...|.+.+.++.+ .|+++.+++||.+..+......+.... .........
T Consensus 172 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~~~ 235 (271)
T 4iin_A 172 -------GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKA---------DYVKNIPLN 235 (271)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------------CGGGCTTC
T ss_pred -------CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHHH---------HHHhcCCcC
Confidence 2245678999999999998877654 689999999999987653322221111 111223345
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 236 ~~~~p~dvA~~i~~l~s~---~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 236 RLGSAKEVAEAVAFLLSD---HSSYITGETLKVNGGL 269 (271)
T ss_dssp SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCC---CcCCCcCCEEEeCCCe
Confidence 678899999999987752 1245789999998874
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=175.11 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=154.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++|+.. ++. .....+ ...++.++.+|+.|.+++.++++
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICARDA--------EACADTATRLSAYGDCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCH--------HHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHH
Confidence 346899999999999999999999999 5999954432 210 000001 11267888999999998887775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCC----CEEEEecCccccccCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKV----RRLVYNSTADVVFDGSH 141 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gv----kr~I~~SS~~vyg~~~~ 141 (586)
++|+|||+||... ...+++..+++|+.|+.++++++. +.+. +++|++||...+...
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~-- 175 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM-- 175 (276)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC--
T ss_pred HHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC--
Confidence 6899999999752 234567899999999988887664 3344 799999999876311
Q ss_pred CCCCCCCCcccCCCCCC-hHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 142 DIHNGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~-~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
.+.. .|+.||...|.+.+.++.+ .|+++++++||.+.++......+......... .
T Consensus 176 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~-------~ 235 (276)
T 2b4q_A 176 -------------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADS-------A 235 (276)
T ss_dssp -------------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHH-------H
T ss_pred -------------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhh-------c
Confidence 1234 7999999999998877543 58999999999998764321111111111110 0
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 236 ~~p~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 236 SIPMGRWGRPEEMAALAISLAGT---AGAYMTGNVIPIDGGF 274 (276)
T ss_dssp TSTTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCc
Confidence 11223478899999999987752 1234678999998874
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=174.08 Aligned_cols=219 Identities=11% Similarity=0.075 Sum_probs=157.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||+|+||++++++|+++|+ +|++.+ .|+.... .....+ ...++.++.+|+.|.+++.++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINY-------ARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE-------SSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEc-------CCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999999999994 887731 2222100 000000 13468899999999998887775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||.+.+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------- 146 (258)
T 3oid_A 75 QIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-------- 146 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC--------
Confidence 4799999999651 23346778999999999999887 445667999999987762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++..... ...+....... .+
T Consensus 147 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~p 210 (258)
T 3oid_A 147 -------YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQN---------TP 210 (258)
T ss_dssp -------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHH---------CT
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhc---------CC
Confidence 2245678999999999998877654 489999999999987643221 12222222221 12
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+.+++|+|++++.++.. ......|+++++.+|..
T Consensus 211 ~~r~~~~~dva~~v~~L~s~---~~~~itG~~i~vdGG~~ 247 (258)
T 3oid_A 211 AGRMVEIKDMVDTVEFLVSS---KADMIRGQTIIVDGGRS 247 (258)
T ss_dssp TSSCBCHHHHHHHHHHHTSS---TTTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCc---ccCCccCCEEEECCCcc
Confidence 34578899999999977651 12457799999998764
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=171.31 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=155.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.... +... ...+.......++..+.+|+.|.+++.++++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 86 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEG-LEAS--KAAVLETAPDAEVLTTVADVSDEAQVEAYVTAT 86 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 0000 0000000013468889999999999888775
Q ss_pred -----CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHH----HHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTA----CRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~llea----a~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||.... ..+++..+++|+.|+.++.++ +++.+.+++|++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 157 (267)
T 1iy8_A 87 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR--------- 157 (267)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc---------
Confidence 68999999997522 234678899999988866554 4455778999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--------cHHHHHHHhcCCCceEEE
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--------LVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--------~~~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.||...+.+.+.++.+ +|+++++++||.+.++.... ......+....
T Consensus 158 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~------- 224 (267)
T 1iy8_A 158 ------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQ------- 224 (267)
T ss_dssp ------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHT-------
T ss_pred ------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhc-------
Confidence 1234578999999999988876542 58999999999998763110 00000001111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+...+.+.+|+|++++.++.. ......|+.+++.++...+
T Consensus 225 --~~p~~r~~~~~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 225 --VNPSKRYGEAPEIAAVVAFLLSD---DASYVNATVVPIDGGQSAA 266 (267)
T ss_dssp --TCTTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTTTTB
T ss_pred --cCCCCCCcCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcccC
Confidence 11234578999999999877641 1234678999999876543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=176.77 Aligned_cols=221 Identities=16% Similarity=0.136 Sum_probs=158.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+.... +... ...+.. ...++.++.+|+.|.+++.++++
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVER-LEDV--AKQVTD--TGRRALSVGTDITDDAQVAHLVDET 82 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHH-HHHH--HHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 589995543210 0000 000000 13468899999999999887775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.++.++++++.. .+ .++|++||...+.
T Consensus 83 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 152 (264)
T 3ucx_A 83 MKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRH--------- 152 (264)
T ss_dssp HHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGC---------
T ss_pred HHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhcc---------
Confidence 6899999998741 2245678899999999999987643 23 6999999998762
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH-----------HHHHHHhcCCCce
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV-----------PLLVNLAKPGWTK 212 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~-----------~~l~~~~~~g~~~ 212 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.++++...... ..+.+...
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----- 221 (264)
T 3ucx_A 153 ------SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA----- 221 (264)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH-----
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh-----
Confidence 1234568999999999998877653 6899999999999876432111 11222222
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++.+...+.+++|+|++++.++.. ......|+++++.+|..
T Consensus 222 ----~~~p~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 222 ----AGSDLKRLPTEDEVASAILFMASD---LASGITGQALDVNCGEY 262 (264)
T ss_dssp ----TTSSSSSCCBHHHHHHHHHHHHSG---GGTTCCSCEEEESTTSS
T ss_pred ----ccCCcccCCCHHHHHHHHHHHcCc---cccCCCCCEEEECCCcc
Confidence 233445688999999999877751 12457899999998764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=175.33 Aligned_cols=221 Identities=11% Similarity=0.032 Sum_probs=155.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.++++|||||+|+||++++++|+++| ++|++.++.... +... ...+.. ...++..+.+|+.|.+++.++++
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKN-VSAA--VDGLRA--AGHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHT--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCcEEEEECCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999 589985543210 0000 000000 13468899999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh------CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE------CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~------~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-------- 167 (279)
T 3sju_A 96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-------- 167 (279)
T ss_dssp HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc--------
Confidence 5899999999762 2334677889999999999998754 4667999999998762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-----------cHHHHHHHhcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-----------LVPLLVNLAKPGWT 211 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-----------~~~~l~~~~~~g~~ 211 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++.... ..+........
T Consensus 168 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 237 (279)
T 3sju_A 168 -------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA--- 237 (279)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT---
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh---
Confidence 2234568999999988888776543 68999999999998653110 11122222222
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 238 ------~~p~~r~~~pedvA~~v~~L~s~---~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 238 ------KIPLGRYSTPEEVAGLVGYLVTD---AAASITAQALNVCGGL 276 (279)
T ss_dssp ------TCTTSSCBCHHHHHHHHHHHTSS---GGGGCCSCEEEESTTC
T ss_pred ------cCCCCCCCCHHHHHHHHHHHhCc---cccCcCCcEEEECCCc
Confidence 22344578899999999877641 1234789999998875
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-19 Score=179.93 Aligned_cols=236 Identities=11% Similarity=0.074 Sum_probs=162.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCC---CeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSG---RAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~---~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.... +... ...+.. ... ++.++.+|+.|.+++.+++
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~~~~Dv~d~~~v~~~~ 97 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDR-LEET--KQQILK--AGVPAEKINAVVADVTEASGQDDII 97 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCCCceEEEEecCCCCHHHHHHHH
Confidence 346899999999999999999999999 599995543210 0000 000000 011 5789999999999888777
Q ss_pred c-------CCCEEEEcccCCCC---------CCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCC
Q 007866 83 E-------GASTVFYVDATDLN---------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~---------~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+ ++|+|||+||.... ..+++..+++|+.|+.++++++.. .+ .++|++||...+...
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~--- 173 (297)
T 1xhl_A 98 NTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA--- 173 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC---
T ss_pred HHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC---
Confidence 5 68999999997521 224678999999999999887764 45 799999998776311
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGW 210 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~ 210 (586)
..+...|+.+|...|.+.+.++. .+|+++++++||.+.++..... ...........
T Consensus 174 -----------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (297)
T 1xhl_A 174 -----------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC- 241 (297)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT-
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhc-
Confidence 02456899999999999887753 3689999999999988632111 01111221111
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHH
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEG 273 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~ 273 (586)
.+...+.+.+|+|++++.++.... .....|+.+++.++......+.+..+.+.
T Consensus 242 --------~p~~r~~~pedvA~~v~~l~s~~~--~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 242 --------IPVGHCGKPEEIANIIVFLADRNL--SSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCCcc--cCCccCcEEEECCCccccccccccchhhh
Confidence 122357889999999998775100 12467899999998776666655444443
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=168.69 Aligned_cols=203 Identities=14% Similarity=0.016 Sum_probs=150.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||+|+||++++++|+++| ++|+++++ ++++. ......+.+|+.|.+++.++++
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r--------~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 65 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDL--------SANDQ-------ADSNILVDGNKNWTEQEQSILEQTA 65 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEES--------SCCTT-------SSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec--------Ccccc-------ccccEEEeCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999 59999544 33211 0135677899999988877765
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++.+++...- -.++|++||...+.
T Consensus 66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 135 (236)
T 1ooe_A 66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------- 135 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------
Confidence 6899999999652 123457889999999999999887642 24899999998762
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.||...+.+.+.++.+ .|+++++++||.+.++. ....... ....
T Consensus 136 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~--------~~~~~~~---------~~~~ 193 (236)
T 1ooe_A 136 -----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM--------NRKWMPN---------ADHS 193 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--------HHHHSTT---------CCGG
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc--------hhhcCCC---------cccc
Confidence 1234578999999999999988654 45999999999997652 1111111 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.++..+|+|++++.++... ......|+.+++.++.
T Consensus 194 ~~~~~~dvA~~i~~~l~s~--~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 194 SWTPLSFISEHLLKWTTET--SSRPSSGALLKITTEN 228 (236)
T ss_dssp GCBCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEEET
T ss_pred ccCCHHHHHHHHHHHHcCC--CcccccccEEEEecCC
Confidence 4677899999998766411 1234668899988764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=175.40 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=145.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
++|+++||||+|+||++++++|+++| ++|+++++.. ++ . ......++..+.+|+.|.+++.++++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~--~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEG-HPLLLLARRV--------ER--L-KALNLPNTLCAQVDVTDKYTFDTAITRAE 82 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCH--------HH--H-HTTCCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HH--H-HHhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999 5899855432 21 0 11123468899999999998887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 83 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------- 151 (266)
T 3p19_A 83 KIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK----------- 151 (266)
T ss_dssp HHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred HHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC-----------
Confidence 6899999999762 22346678999999999977765 455778999999998762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++....... .......... .+...+
T Consensus 152 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~--------~~~~r~ 219 (266)
T 3p19_A 152 ----TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR--------VDMGGV 219 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH--------HHTTCC
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc--------ccccCC
Confidence 1234568999999999888877543 68999999999998874322111 1111110000 012347
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
++++|+|++++.+++
T Consensus 220 ~~pedvA~av~~l~~ 234 (266)
T 3p19_A 220 LAADDVARAVLFAYQ 234 (266)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 889999999999888
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-19 Score=171.55 Aligned_cols=187 Identities=15% Similarity=0.004 Sum_probs=132.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
++++|+||||+|+||++++++|+++| ++|+++++.. ++. .....+ .++..+.+|+.|.+++.++++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 72 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDE--------KRLQALAAEL--EGALPLPGDVREEGDWARAVAAM 72 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHS--TTCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh--hhceEEEecCCCHHHHHHHHHHH
Confidence 45789999999999999999999999 4999854432 210 000111 267889999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHH----HHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVT----ACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lle----aa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.++.++++ .+++.+.+++|++||...+.
T Consensus 73 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 142 (234)
T 2ehd_A 73 EEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN---------- 142 (234)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------
Confidence 6899999999752 233467889999999975554 45667788999999998763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.+|...|.+.+.++. ..|++++++|||.+..+..... . . . ..+
T Consensus 143 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---------~-~---------~-~~~ 197 (234)
T 2ehd_A 143 -----PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGNT---------P-G---------Q-AWK 197 (234)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------------
T ss_pred -----CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccccc---------c-c---------c-cCC
Confidence 123457899999998888776643 2589999999999876532110 0 0 0 115
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
++.+|+|++++.++.
T Consensus 198 ~~~~dvA~~~~~l~~ 212 (234)
T 2ehd_A 198 LKPEDVAQAVLFALE 212 (234)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhC
Confidence 789999999998887
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=177.02 Aligned_cols=220 Identities=14% Similarity=0.037 Sum_probs=155.5
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+ |+||++++++|+++| ++|+++++... ... ....+... .+++.++.+|+.|.+++.++++
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~--~~~--~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~ 91 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPK--LEK--RVREIAKG--FGSDLVVKCDVSLDEDIKNLKK 91 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGG--GHH--HHHHHHHH--TTCCCEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHH--HHH--HHHHHHHh--cCCeEEEEcCCCCHHHHHHHHH
Confidence 345799999999 999999999999999 59998554321 000 00000000 1236789999999998887775
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCCC---CEEEEecCccccccCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~gv---kr~I~~SS~~vyg~~~~~ 142 (586)
++|+|||+||... ...+++..+++|+.|+.++++++...-. .++|++||.+.+.
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----- 166 (285)
T 2p91_A 92 FLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----- 166 (285)
T ss_dssp HHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----
T ss_pred HHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----
Confidence 6899999999752 1234678899999999999999876532 6999999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...|.+.+.++.+ .|+++++++||.+.++..... .+.+........
T Consensus 167 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~------- 229 (285)
T 2p91_A 167 ----------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVN------- 229 (285)
T ss_dssp ----------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHS-------
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcC-------
Confidence 1234568999999999998877543 589999999999999864322 222322222211
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+.+++|+|++++.++.. ......|+.|++.++.
T Consensus 230 --p~~~~~~~~dva~~~~~l~s~---~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 230 --PFGKPITIEDVGDTAVFLCSD---WARAITGEVVHVDNGY 266 (285)
T ss_dssp --TTSSCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHcCC---cccCCCCCEEEECCCc
Confidence 122467899999999987641 1234578899998874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=174.73 Aligned_cols=218 Identities=15% Similarity=0.071 Sum_probs=156.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.. ++. .....+ ..++..+.+|+.|.+++.++++
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~ 73 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREE--------RLLAEAVAAL-EAEAIAVVADVSDPKAVEAVFAE 73 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHTC-CSSEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 4999955432 110 000111 1468889999999998887765
Q ss_pred ------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||.... ..+++..+++|+.|+.++.+++...- ..++|++||...++ .
T Consensus 74 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--~-------- 143 (263)
T 2a4k_A 74 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG--A-------- 143 (263)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC--H--------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC--C--------
Confidence 47999999997521 23457789999999999999987642 35999999998761 1
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
.+...|+.||...+.+.+.++. .+|+++++++||.+.++......+.......... +...+.
T Consensus 144 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~---------p~~~~~ 208 (263)
T 2a4k_A 144 ------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGAS---------PLGRAG 208 (263)
T ss_dssp ------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTS---------TTCSCB
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcC---------CCCCCc
Confidence 2346899999988887776542 3689999999999998754332222222222211 123468
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+.+|+|++++.++.. ......|+.+++.++..+
T Consensus 209 ~p~dvA~~v~~l~s~---~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 209 RPEEVAQAALFLLSE---ESAYITGQALYVDGGRSI 241 (263)
T ss_dssp CHHHHHHHHHHHHSG---GGTTCCSCEEEESTTTTT
T ss_pred CHHHHHHHHHHHhCc---cccCCcCCEEEECCCccc
Confidence 899999999987751 123467899999887643
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=171.61 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=153.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++..+.+|+.|.+++.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYND--------ATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 5789999999999999999999999 5999955432 100 000000 12467889999999999888876
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.++.++.+++.. .+ ..++|++||...+.
T Consensus 73 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 144 (256)
T 1geg_A 73 ARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV-------- 144 (256)
T ss_dssp HHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--------
Confidence 7999999999752 1234567899999999888877654 34 57999999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhc--CCCceEEEcCCCc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAK--PGWTKFIIGSGEN 220 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~--~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...|.+.+.++.+ +|+++++++||.+.++........+..... ............+
T Consensus 145 -------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 217 (256)
T 1geg_A 145 -------GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRIT 217 (256)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCT
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCC
Confidence 1123568999999999988877542 589999999999987631111000000000 0000000011112
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 218 ~~r~~~p~dvA~~v~~l~s~---~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 218 LGRLSEPEDVAACVSYLASP---DSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSSSS
T ss_pred CCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEeCCCcc
Confidence 23578999999999987751 12346789999988753
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=178.62 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=157.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++++||||+|.||++++++|+++| ++|++.|+.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~ 97 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAA--------EKGKALADEL-GNRAEFVSTNVTSEDSVLAAIEA 97 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHH
Confidence 346789999999999999999999999 5999955432 210 000111 3468999999999999888775
Q ss_pred -----CCCEEEEccc-CCCC------------CCChhHHHHHHHHHHHHHHHHHHh----------CCCCEEEEecCccc
Q 007866 84 -----GASTVFYVDA-TDLN------------TDDFYNCYMIIVQGAKNVVTACRE----------CKVRRLVYNSTADV 135 (586)
Q Consensus 84 -----~~D~Vih~aa-~~~~------------~~~~~~~~~~Nv~gt~~lleaa~~----------~gvkr~I~~SS~~v 135 (586)
+.|+|||+++ .... ..+++..+++|+.++.++.+++.. .+-.++|++||...
T Consensus 98 ~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 177 (281)
T 3ppi_A 98 ANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAG 177 (281)
T ss_dssp HTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGG
T ss_pred HHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccc
Confidence 4799999944 3311 112588999999999999998763 23458999999987
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCce
Q 007866 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK 212 (586)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~ 212 (586)
+. +..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+......+..........+
T Consensus 178 ~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~- 241 (281)
T 3ppi_A 178 YE---------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANIP- 241 (281)
T ss_dssp TS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTCC-
T ss_pred cC---------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcCC-
Confidence 62 1234578999999888887766543 5899999999999765322222222222222211
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
....+.+.+|+|++++.++. .+...|+++++.++..++
T Consensus 242 -------~~~~~~~pedvA~~v~~l~s-----~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 242 -------FPKRLGTPDEFADAAAFLLT-----NGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp -------SSSSCBCHHHHHHHHHHHHH-----CSSCCSCEEEESTTCCCC
T ss_pred -------CCCCCCCHHHHHHHHHHHHc-----CCCcCCcEEEECCCcccC
Confidence 11457889999999999887 467889999999987654
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=172.68 Aligned_cols=225 Identities=14% Similarity=0.054 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||++++++|+++| ++|.+.+............ .. .....++.++.+|+.|.+++.++++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVSTWLM--HE--RDAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHHHHHH--HH--HTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHH--HH--HhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999 5888855322100000000 00 0123468999999999998887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.++.++++++.. .+..++|++||...+.
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------- 167 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR----------- 167 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-----------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-----------
Confidence 6899999999762 2335678899999999999988743 4567999999987763
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+......+.... . ..........+.
T Consensus 168 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~----~----~~~~~~~~~~~~ 235 (269)
T 3gk3_A 168 ----GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLE----A----KILPQIPVGRLG 235 (269)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-----------C----CSGGGCTTSSCB
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHH----H----HhhhcCCcCCcc
Confidence 1234578999999888888766543 589999999999988754433221111 0 011122334577
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+.+|+|++++.++.. ......|+++++.+|..++
T Consensus 236 ~p~dvA~~v~~L~s~---~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 236 RPDEVAALIAFLCSD---DAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp CHHHHHHHHHHHTST---TCTTCCSCEEEESTTSCCC
T ss_pred CHHHHHHHHHHHhCC---CcCCeeCcEEEECCCEeCc
Confidence 899999999877651 1234779999999987553
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-19 Score=175.54 Aligned_cols=220 Identities=13% Similarity=0.084 Sum_probs=159.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|+||++++++|+++| ++|.+. .|+.++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~--------~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 94 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAG-ARILIN--------GTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAF 94 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEC--------CSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE--------eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 457899999999999999999999999 599994 4432210 000000 1346888999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 95 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~------- 167 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL------- 167 (271)
T ss_dssp HHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC-------
Confidence 6 6899999999762 2345678899999999999777654 3567999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++...... +.+....... .
T Consensus 168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---------~ 230 (271)
T 4ibo_A 168 --------ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKAR---------T 230 (271)
T ss_dssp --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHH---------S
T ss_pred --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhc---------C
Confidence 2245678999999999998877543 6899999999999876432111 1122222221 1
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+...+.+.+|+|++++.++.. ......|+++++.+|...
T Consensus 231 p~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 231 PAKRWGKPQELVGTAVFLSAS---ASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp TTCSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred CCCCCcCHHHHHHHHHHHhCc---cccCCCCcEEEECCCeec
Confidence 223467799999999877651 124577999999987644
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=173.93 Aligned_cols=224 Identities=15% Similarity=0.127 Sum_probs=146.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||++++++|+++| ++|.++|+.....+.... ..+. -...++.++.+|+.|.+++.++++
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPVI--AELS--GLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHHH--HHHH--HTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHH--HHHH--hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999 588885542110000000 0000 013468899999999888877775
Q ss_pred ----CCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHHHHhC----C---CCEEEEecCccccccCCCCC
Q 007866 84 ----GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC----K---VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 ----~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~lleaa~~~----g---vkr~I~~SS~~vyg~~~~~~ 143 (586)
++|+|||+||.. ....+++..+++|+.|+.++++++... + ..++|++||...+.
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------ 176 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM------ 176 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc------
Confidence 689999999973 123456788999999999998877543 2 45899999987762
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++......+........+ ..+
T Consensus 177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--------~~p 239 (280)
T 4da9_A 177 ---------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESG--------LVP 239 (280)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhc--------CCC
Confidence 1234568999999999988877543 68999999999998875433222211111111 123
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
...+.+++|+|++++.++.. ......|+++++.+|..+
T Consensus 240 ~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 277 (280)
T 4da9_A 240 MRRWGEPEDIGNIVAGLAGG---QFGFATGSVIQADGGLSI 277 (280)
T ss_dssp --CCBCHHHHHHHHHHHHTS---TTGGGTTCEEEESTTCC-
T ss_pred cCCcCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCccc
Confidence 34578899999999987751 123467999999987543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=180.12 Aligned_cols=219 Identities=19% Similarity=0.097 Sum_probs=138.7
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|++..+.+++||||||+|+||++++++|+++| ++|++.++.... +.. ....+.......++.++.+|+.|.+++.+
T Consensus 1 M~m~~l~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 1 MSLKDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDS-IDK--ALATLEAEGSGPEVMGVQLDVASREGFKM 76 (319)
T ss_dssp --CCCCTTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHHTCGGGEEEEECCTTCHHHHHH
T ss_pred CCccCCCCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH--HHHHHHhcCCCCeEEEEECCCCCHHHHHH
Confidence 55555677899999999999999999999999 599995543210 000 00000000011268899999999999888
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----------CCCEEEEecCcccc
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVV 136 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----------gvkr~I~~SS~~vy 136 (586)
+++ ++|+|||+||... ...+++..+++|+.|+.++++++... +-.++|++||...+
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~ 156 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAF 156 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGT
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccc
Confidence 775 5799999999752 23457789999999999999887653 24579999999876
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHH----HHHHHHhhcCCCCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCC
Q 007866 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQ----AEALVLFANNIDGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGW 210 (586)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~----~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~ 210 (586)
.. ......|+.||.. +|.+.+++.. .|+++++++||.+.++.... ..+..........
T Consensus 157 ~~---------------~~~~~~Y~aSKaal~~~~~~la~e~~~-~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 220 (319)
T 3ioy_A 157 LA---------------AGSPGIYNTTKFAVRGLSESLHYSLLK-YEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPV 220 (319)
T ss_dssp CC---------------CSSSHHHHHHHHHHHHHHHHHHHHHGG-GTCEEEEECCCCBC---------------------
T ss_pred cC---------------CCCCHHHHHHHHHHHHHHHHHHHHhhh-cCCEEEEEEcCeEccCcccccccCchhhcccccch
Confidence 32 1234689999995 5555555544 68999999999998764321 1111111000000
Q ss_pred ceEEEcCC-CccccccchhHHHHHHHHHHH
Q 007866 211 TKFIIGSG-ENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 211 ~~~i~g~g-~~~~~~i~v~Dva~ai~~ale 239 (586)
......+. ......++++|+|++++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~pe~vA~~~~~al~ 250 (319)
T 3ioy_A 221 DKTAVERLAGVHEFGMEPDVIGARVIEAMK 250 (319)
T ss_dssp --------CCGGGSSBCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 00000111 111123789999999999998
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=168.93 Aligned_cols=217 Identities=16% Similarity=0.063 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+++++|+||||+|+||++++++|+++| ++|.+.+. |..... ..... -...++.++.+|+.|.+++.+++
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~~-------r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 95 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADG-FNIGVHYH-------RDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVL 95 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES-------SCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeC-------CchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 356899999999999999999999999 48766322 221100 00000 01347899999999999988777
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH-----hCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR-----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~-----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++. +.+..++|++||...+.
T Consensus 96 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------ 169 (267)
T 4iiu_A 96 EHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM------ 169 (267)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH------
T ss_pred HHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc------
Confidence 5 6899999999862 234568889999999999999874 45667999999987763
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+.++..... +.......... .
T Consensus 170 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~---------p 230 (267)
T 4iiu_A 170 ---------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-ESALKEAMSMI---------P 230 (267)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-HHHHHHHHHTC---------T
T ss_pred ---------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-HHHHHHHHhcC---------C
Confidence 1234578999999777776655432 589999999999998865433 22233222221 2
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+.+++|+|++++.++.. ......|+++++.+|
T Consensus 231 ~~~~~~~edva~~~~~L~s~---~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 231 MKRMGQAEEVAGLASYLMSD---IAGYVTRQVISINGG 265 (267)
T ss_dssp TCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhCC---cccCccCCEEEeCCC
Confidence 23467899999999987751 124578999999886
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=173.23 Aligned_cols=225 Identities=12% Similarity=0.052 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|+++++.... +.. ....+...- ...++.++.+|+.|.+++.++++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSER-LEE--TRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599995554210 000 000000000 01157899999999998887765
Q ss_pred ------CCCEEEEcccCCCC-----------CCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCC
Q 007866 84 ------GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++|+|||+||.... ..+++..+++|+.++.++++++.. .+ +++|++||...+...
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA--- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC---
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC---
Confidence 68999999997521 124678899999999999988764 34 799999999776311
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGW 210 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~ 210 (586)
..+...|+.||...|.+.+.++. .+|+++++++||.+.++..... ...+.......
T Consensus 156 -----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (280)
T 1xkq_A 156 -----------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC- 223 (280)
T ss_dssp -----------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT-
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC-
Confidence 13456899999999999887753 3689999999999998742111 01122222111
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+.+.+|+|++++.++.... .....|+.+++.++..
T Consensus 224 --------~p~~~~~~pedvA~~v~~l~s~~~--~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 --------IPIGAAGKPEHIANIILFLADRNL--SFYILGQSIVADGGTS 263 (280)
T ss_dssp --------CTTSSCBCHHHHHHHHHHHHCHHH--HTTCCSCEEEESTTGG
T ss_pred --------CCCCCCCCHHHHHHHHHHhcCccc--ccCccCCeEEECCCcc
Confidence 123457899999999998774100 1246789999988753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=175.04 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=155.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+.+|+++||||+|.||++++++|+++| ++|.+.|+. .+.. .....+ ..++..+.+|+.|.+++.++++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r~--------~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDIN--------AEGAKAAAASI-GKKARAIAADISDPGSVKALFA 72 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSC--------HHHHHHHHHHH-CTTEEECCCCTTCHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC--------HHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHH
Confidence 3567999999999999999999999999 599995443 2210 000011 3468899999999998888775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHH----HHhCC-CCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTA----CRECK-VRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~llea----a~~~g-vkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... ...+++..+++|+.|+.++.++ +++.+ ..++|++||...+.
T Consensus 73 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 145 (247)
T 3rwb_A 73 EIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA------- 145 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc-------
Confidence 6899999999762 2335678999999999999888 44545 57999999988763
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH----HHHHHHhcCCCceEEEcC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~----~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+...... ..+....
T Consensus 146 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~----------- 206 (247)
T 3rwb_A 146 --------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML----------- 206 (247)
T ss_dssp --------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH-----------
T ss_pred --------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc-----------
Confidence 1234578999999988888777544 6899999999999865321111 0111110
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.....+...+|+|+++..++.. ......|+++++.+|.
T Consensus 207 -~~~~r~~~pedva~~v~~L~s~---~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 207 -QAMKGKGQPEHIADVVSFLASD---DARWITGQTLNVDAGM 244 (247)
T ss_dssp -SSSCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTS
T ss_pred -cccCCCcCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 1123456799999999877651 1235789999998864
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-19 Score=177.81 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+++++||||+|.||++++++|+++| ++|++.++.... ... ....+.. ....++.++.+|+.|.+++.++++
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPR-VLT--AARKLAG-ATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHH-HHH--HHHHHHH-HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHH-hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999 599985543210 000 0000000 013468899999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+.
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 169 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR---------- 169 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH----------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC----------
Confidence 6899999999651 2345778999999999999998743 3456999999987763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC---CcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~---~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+......|+.||+..+.+.+.++.+ +|+++.+++||.+.++... ............. .+.
T Consensus 170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~---------~p~ 235 (277)
T 4fc7_A 170 -----GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTA---------SPL 235 (277)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHT---------STT
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhcc---------CCC
Confidence 1234568999999999988877543 5899999999999876311 0011112222111 223
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
..+.+.+|+|++++.++.. ......|+++++.+|..++
T Consensus 236 ~r~~~p~dvA~~v~fL~s~---~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 236 QRLGNKTEIAHSVLYLASP---LASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTHHHH
T ss_pred CCCcCHHHHHHHHHHHcCC---ccCCcCCCEEEECCCcccC
Confidence 3467899999999987751 1245789999999886444
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=173.45 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=158.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+|+++||||+|+||++++++|+++| ++|++.++.. +.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHS--------DALQVVADEIAGVGGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSG--------GGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 456899999999999999999999999 5999955432 210 000000 1246889999999999988887
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CC-CEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KV-RRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gv-kr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++++++... +. .++|++||.+.+...
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~---- 176 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN---- 176 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC----
Confidence 6 7899999999862 23346777899999999999887543 32 689999998765211
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
...+...|+.||...+.+.+.++.+ +|+++.+++||.+..+..... +......... ..
T Consensus 177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~~~~~~~~~---------~p 237 (276)
T 3r1i_A 177 ---------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-ADYHALWEPK---------IP 237 (276)
T ss_dssp ---------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GGGHHHHGGG---------ST
T ss_pred ---------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hHHHHHHHhc---------CC
Confidence 1134578999999999998877654 689999999999988754322 1222222221 12
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+.+.+|+|++++.++.. ......|+++++.+|..
T Consensus 238 ~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 238 LGRMGRPEELTGLYLYLASA---ASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp TSSCBCGGGSHHHHHHHHSG---GGTTCCSCEEEESTTTT
T ss_pred CCCCcCHHHHHHHHHHHcCc---cccCccCcEEEECcCcc
Confidence 23477899999999877651 13457899999988753
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=174.48 Aligned_cols=203 Identities=16% Similarity=0.033 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~-~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+++|+||||+|+||++++++|++ +|+ +|+++++.... ... ....+.. ...++.++.+|+.|.+++.++++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~-~~~--~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTR-GQA--AVQQLQA--EGLSPRFHQLDIDDLQSIRALRDFL 76 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHH-HHH--HHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHH-HHH--HHHHHHh--cCCeeEEEECCCCCHHHHHHHHHHH
Confidence 468999999999999999999999 894 99985543210 000 0000000 12467899999999999888776
Q ss_pred -----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCC--------
Q 007866 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSH-------- 141 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~-------- 141 (586)
++|+|||+||.... ..+++..+++|+.|+.++++++..... .++|++||...+.....
T Consensus 77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~ 156 (276)
T 1wma_A 77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQK 156 (276)
T ss_dssp HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhh
Confidence 78999999997621 244678899999999999999987632 49999999988742100
Q ss_pred -CCCCCCCCc-----------------ccCCCCCChHHHHHHHHHHHHHhhcCC-------CCceEEEEeCCCcccCCCC
Q 007866 142 -DIHNGDETL-----------------TCCWKFQDLMCDLKAQAEALVLFANNI-------DGLLTCALRPSNVFGPGDT 196 (586)
Q Consensus 142 -~~~~~~E~~-----------------p~~~~p~~~Y~~sK~~~E~~l~~~~~~-------~gl~~~ilRp~~v~G~~~~ 196 (586)
...+.+|+. +.+..|.+.|+.||...|.+++.++.+ .|+++++++||.+.++...
T Consensus 157 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~ 236 (276)
T 1wma_A 157 FRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 236 (276)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred ccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCC
Confidence 001222221 112235589999999999998877654 5899999999999876432
Q ss_pred CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 197 QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 197 ~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
. ..+.+.+|+|++++.++.
T Consensus 237 ~------------------------~~~~~~~~~a~~~~~l~~ 255 (276)
T 1wma_A 237 P------------------------KATKSPEEGAETPVYLAL 255 (276)
T ss_dssp T------------------------TCSBCHHHHTHHHHHHHS
T ss_pred c------------------------cccCChhHhhhhHhhhhc
Confidence 1 136789999999998875
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=170.52 Aligned_cols=205 Identities=14% Similarity=0.053 Sum_probs=149.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCC-CCCCC-CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSL-LPDSL-SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~-~~~~l-~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+|+|+||||+|+||++++++|+++|. ++|+++++. .+... +.+.. ...++.++.+|+.|.+++.++
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~--------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 90 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN--------REQAKELEDLAKNHSNIHILEIDLRNFDAYDKL 90 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC--------TTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC--------hhhhHHHHHhhccCCceEEEEecCCChHHHHHH
Confidence 4578999999999999999999999993 389985543 22110 00000 124689999999999888887
Q ss_pred hc---------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC----------C-----CCEEEE
Q 007866 82 LE---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----------K-----VRRLVY 129 (586)
Q Consensus 82 l~---------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~----------g-----vkr~I~ 129 (586)
++ ++|+|||+||... ...+++..+++|+.++.++++++... + ..++|+
T Consensus 91 ~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 170 (267)
T 1sny_A 91 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN 170 (267)
T ss_dssp HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred HHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEE
Confidence 76 7999999999753 12346778999999999999988653 2 468999
Q ss_pred ecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHh
Q 007866 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLA 206 (586)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~ 206 (586)
+||...+.... +..+...|+.+|+..|.+.+.++.+ .|++++++|||.+..+....
T Consensus 171 isS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------- 229 (267)
T 1sny_A 171 MSSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--------- 229 (267)
T ss_dssp ECCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT---------
T ss_pred EecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC---------
Confidence 99998864211 1135568999999999999887654 58999999999997653211
Q ss_pred cCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 207 ~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
..++..+|+|+.++.++... .....|..+.+.+
T Consensus 230 ---------------~~~~~~~~~a~~~~~~~~~~---~~~~~G~~~~~~g 262 (267)
T 1sny_A 230 ---------------SAPLDVPTSTGQIVQTISKL---GEKQNGGFVNYDG 262 (267)
T ss_dssp ---------------TCSBCHHHHHHHHHHHHHHC---CGGGTTCEECTTS
T ss_pred ---------------CCCCCHHHHHHHHHHHHHhc---CcCCCCcEEccCC
Confidence 12467899999999988732 2345666555433
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-19 Score=179.45 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=152.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+|+++||||+|.||++++++|+++|. ..|.+.++ +.+.. ...+.+ ..++.++.+|+.|.+++.++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r--------~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVAR--------SEAPLKKLKEKY-GDRFFYVVGDITEDSVLKQLVNAA 72 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEES--------CHHHHHHHHHHH-GGGEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecC--------CHHHHHHHHHHh-CCceEEEECCCCCHHHHHHHHHHH
Confidence 58999999999999999999999862 47877443 32210 000001 2368899999999998887775
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+ .++|++||...+.
T Consensus 73 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~--------- 142 (254)
T 3kzv_A 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNM--------- 142 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCC---------
T ss_pred HHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhcc---------
Confidence 6899999999741 22346778999999999999988 4545 7999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCCceEEEc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~~~~i~g 216 (586)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+..... .+.........
T Consensus 143 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (254)
T 3kzv_A 143 ------YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGL------- 209 (254)
T ss_dssp ------SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHH-------
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHH-------
Confidence 2234678999999999999887654 489999999999998754321 12222222111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+.+.+|+|++++.++.... .....|+.+++.+++.
T Consensus 210 --~~~~r~~~p~dva~~v~~L~s~~~--~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 210 --KENNQLLDSSVPATVYAKLALHGI--PDGVNGQYLSYNDPAL 249 (254)
T ss_dssp --HTTC----CHHHHHHHHHHHHHCC--CGGGTTCEEETTCGGG
T ss_pred --HhcCCcCCcccHHHHHHHHHhhcc--cCCCCccEEEecCccc
Confidence 122347789999999998776210 1347899999887653
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=168.47 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=157.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|.||++++++|+++| ++|.+.|+.... +... ...+.. ...++..+.+|+.|.+++.++++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~~~--~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTE-VEEV--ADEIVG--AGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHHH--HHHHTT--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999 599996554310 0000 000000 13468899999999998887775
Q ss_pred ----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+...
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~-------- 172 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF-------- 172 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC--------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC--------
Confidence 6899999999741 12346788999999999999988 55667899999998765210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc--c
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM--S 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~--~ 222 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+.............. .+........+. .
T Consensus 173 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~ 245 (283)
T 3v8b_A 173 -----TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETA--IPVEWPKGQVPITDG 245 (283)
T ss_dssp -----CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHS--CCCBCTTCSCGGGTT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhh--hhhhhhhhcCccccC
Confidence 1234678999999999998877543 689999999999988754321100000000 000011111122 3
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+...+|+|++++.++.. ......|+++++.+|.
T Consensus 246 r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 246 QPGRSEDVAELIRFLVSE---RARHVTGSPVWIDGGQ 279 (283)
T ss_dssp CCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTH
T ss_pred CCCCHHHHHHHHHHHcCc---cccCCcCCEEEECcCc
Confidence 467899999999877641 1245779999998864
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-18 Score=168.46 Aligned_cols=221 Identities=14% Similarity=0.121 Sum_probs=156.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
...+|+++||||+|+||++++++|+++| ++|.+.+.... .+.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 100 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAA---ERAQ---AVVSEIEQAGGRAVAIRADNRDAEAIEQAI 100 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCH---HHHH---HHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCH---HHHH---HHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999999999999 58888543321 0000 000000 1346889999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+ ++|++||+||... ...+++..+++|+.|+.++++++... +-.++|++||......
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~-------- 172 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV-------- 172 (271)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC--------
T ss_pred HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC--------
Confidence 6 6899999999752 23456888999999999999998765 3469999999754310
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+.++....... ........ .....
T Consensus 173 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-~~~~~~~~---------~~~~r 236 (271)
T 3v2g_A 173 ------PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD-HAEAQRER---------IATGS 236 (271)
T ss_dssp ------CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS-SHHHHHHT---------CTTSS
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch-hHHHHHhc---------CCCCC
Confidence 1245678999999999988777543 58999999999999875432111 11111111 11234
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+|++++.++.. ......|+++++.+|.
T Consensus 237 ~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 237 YGEPQDIAGLVAWLAGP---QGKFVTGASLTIDGGA 269 (271)
T ss_dssp CBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhCc---ccCCccCCEEEeCcCc
Confidence 66799999999877641 1345789999998864
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=174.42 Aligned_cols=231 Identities=11% Similarity=0.103 Sum_probs=157.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.|+.... +.. ....+........+..+.+|+.|.+++.++++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREEN-VNE--TIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKY 83 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHH-HHH--HHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhc
Confidence 356899999999999999999999999 599996554310 000 00000000112357789999999999888876
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 84 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 149 (267)
T 3t4x_A 84 PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM-------------- 149 (267)
T ss_dssp CCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc--------------
Confidence 6899999999762 12346677999999977776655 446677999999998762
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE----------EEcCC
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF----------IIGSG 218 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~----------i~g~g 218 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+. ...+......+.... .....
T Consensus 150 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (267)
T 3t4x_A 150 -PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEG----VETMLNSLYPNEQLTIEEAEKRFMKENRPT 224 (267)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHH----HHHHHHHSSTTSCCCHHHHHHHHHHHHCTT
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCcc----HHHHHhhcCcccCCCHHHHHHHHhhccCCc
Confidence 2245678999999999998877543 57999999999987652 111111111110000 00011
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.....+.+++|+|++++.++.. ......|+++++.+|...+
T Consensus 225 ~~~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 225 SIIQRLIRPEEIAHLVTFLSSP---LSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp CSSCSCBCTHHHHHHHHHHHSG---GGTTCCSCEEEESTTCSCS
T ss_pred ccccCccCHHHHHHHHHHHcCc---cccCccCCeEEECCCcccc
Confidence 2345688999999999877651 1345789999999987654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=170.79 Aligned_cols=227 Identities=15% Similarity=0.134 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+.. +.. .....+ .++.++.+|+.|.+++.++++
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~ 75 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE--------SGGRALEQEL--PGAVFILCDVTQEDDVKTLVSE 75 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHC--TTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh--cCCeEEEcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999 5999955432 110 000111 247889999999999887775
Q ss_pred ------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||.... ..+++..+++|+.++.++++++... +.+++|++||...+..
T Consensus 76 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~-------- 147 (270)
T 1yde_A 76 TIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIG-------- 147 (270)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCC--------
Confidence 68999999997521 2235788999999999999988532 2479999999865421
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
......|+.+|...|.+.+.++.+ +|+++.++|||.++++..... .+.......... ....
T Consensus 148 -------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------~~~p 214 (270)
T 1yde_A 148 -------QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGM------LAQP 214 (270)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHH------HTST
T ss_pred -------CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHh------hcCC
Confidence 123468999999999998887632 689999999999998631100 000000000000 0011
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLS 268 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~ 268 (586)
...+...+|+|++++.++.. .....|+.+++.++..+...+.+.
T Consensus 215 ~~r~~~p~dva~~v~~L~s~----~~~itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 215 LGRMGQPAEVGAAAVFLASE----ANFCTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp TSSCBCHHHHHHHHHHHHHH----CTTCCSCEEEESTTTTSCC-----
T ss_pred CCCCcCHHHHHHHHHHHccc----CCCcCCCEEEECCCeecccCcCcc
Confidence 23467899999999877751 245679999999987666544433
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=171.44 Aligned_cols=191 Identities=13% Similarity=0.035 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++|+||||+|+||++++++|+++| ++|+++|+.. +.. .....+ ...++.++.+|+.|.+++.+++
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~ 99 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINK--------HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSA 99 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCH--------HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHH
Confidence 456899999999999999999999999 5999955432 100 000000 1246889999999999888777
Q ss_pred c-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||.... ..+++..+++|+.++.++++++ ++.+.+++|++||...+..
T Consensus 100 ~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------ 173 (272)
T 1yb1_A 100 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS------ 173 (272)
T ss_dssp HHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC------
T ss_pred HHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC------
Confidence 5 68999999997632 2345678999999987777665 4567889999999987631
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC------CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN------IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~------~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
..+...|+.+|...|.+.+.++. ..|++++++||+.+.++.... . .
T Consensus 174 ---------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~------------~-------~ 225 (272)
T 1yb1_A 174 ---------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN------------P-------S 225 (272)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC------------T-------H
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc------------c-------c
Confidence 12456899999999999887754 358999999999998775221 0 0
Q ss_pred CccccccchhHHHHHHHHHHH
Q 007866 219 ENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale 239 (586)
.....+++.+|+|++++.+++
T Consensus 226 ~~~~~~~~~~dva~~i~~~~~ 246 (272)
T 1yb1_A 226 TSLGPTLEPEEVVNRLMHGIL 246 (272)
T ss_dssp HHHCCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 112357889999999999887
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-19 Score=175.03 Aligned_cols=219 Identities=10% Similarity=0.055 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++.++.+|+.|.+++.++
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~ 88 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDV--------SELDAARRALGEQFGTDVHTVAIDLAEPDAPAEL 88 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 356899999999999999999999999 5899855432 110 000000 134689999999999888777
Q ss_pred hc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~vyg~~~~~ 142 (586)
++ ++|++||+||... ...+++..+++|+.++.++.+++... + -.++|++||...+.
T Consensus 89 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----- 163 (266)
T 4egf_A 89 ARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA----- 163 (266)
T ss_dssp HHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-----
Confidence 65 6899999999762 23346778999999999999887543 3 35999999998762
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+..... .+.........
T Consensus 164 ----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-------- 225 (266)
T 4egf_A 164 ----------PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIAR-------- 225 (266)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTT--------
T ss_pred ----------CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhc--------
Confidence 2234578999999999988877543 589999999999987531100 01112222221
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+.+.+|+|++++.++.. ......|+++++.+|..
T Consensus 226 -~p~~r~~~p~dva~~v~~L~s~---~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 226 -IPLGRFAVPHEVSDAVVWLASD---AASMINGVDIPVDGGYT 264 (266)
T ss_dssp -CTTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred -CCCCCCcCHHHHHHHHHHHhCc---hhcCccCcEEEECCCcc
Confidence 2234567899999999977751 12457799999998754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=169.33 Aligned_cols=223 Identities=15% Similarity=0.071 Sum_probs=158.8
Q ss_pred CCCCeEEEEcCCCc--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~--IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+++++||||+|+ ||++++++|+++| ++|.+.++.... . .....+.......++.++.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~--~--~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERL--E--KSVHELAGTLDRNDSIILPCDVTNDAEIETCFA 79 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGG--H--HHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHH--H--HHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHH
Confidence 46789999999999 9999999999999 589885543210 0 000000111122368999999999988887765
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~ 143 (586)
++|+|||+||... ...++...+++|+.++.++++++...-. .++|++||.+.+.
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 153 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL------ 153 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc------
Confidence 5899999999752 2234577889999999999999877532 4899999987762
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.||+..+.+.+.++.+ .|+++.+++||.+..+..... .+..........
T Consensus 154 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 216 (266)
T 3oig_A 154 ---------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERA-------- 216 (266)
T ss_dssp ---------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHS--------
T ss_pred ---------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcC--------
Confidence 1234568999999999988876543 589999999999988643321 122222222211
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
....+.+.+|+|++++.++.. ......|+.+++.+|..
T Consensus 217 -~~~~~~~p~dva~~v~~l~s~---~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 217 -PLRRTTTPEEVGDTAAFLFSD---MSRGITGENLHVDSGFH 254 (266)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred -CCCCCCCHHHHHHHHHHHcCC---chhcCcCCEEEECCCeE
Confidence 123467899999999988762 12457899999998753
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=172.22 Aligned_cols=229 Identities=11% Similarity=-0.009 Sum_probs=161.0
Q ss_pred CCCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
...+|+|+||||+ |+||++++++|+++| ++|.+.++... ..+ ..... -...++.++.+|+.|.+++.++
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~-----~~~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 82 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDR-----FKD--RITEFAAEFGSELVFPCDVADDAQIDAL 82 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGG-----GHH--HHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchh-----hHH--HHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 3467999999999 999999999999999 59998554321 000 00000 0113478899999999998887
Q ss_pred hc-------CCCEEEEcccCCC------------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCC
Q 007866 82 LE-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGS 140 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~ 140 (586)
++ ++|+|||+||... ...+++..+++|+.++.++++++...- -.++|++||.+.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--- 159 (271)
T 3ek2_A 83 FASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--- 159 (271)
T ss_dssp HHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS---
T ss_pred HHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc---
Confidence 75 5799999999752 123467889999999999999987652 24899999988762
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEE
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFII 215 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.||+..+.+.+.++. ..|+++.+++||.+..+...... +.+........
T Consensus 160 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 222 (271)
T 3ek2_A 160 ------------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNS----- 222 (271)
T ss_dssp ------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHS-----
T ss_pred ------------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcC-----
Confidence 224467899999999999887764 35899999999999887544322 22333222221
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHH
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLS 268 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~ 268 (586)
....+...+|+|++++.++.. ......|+++++.+|..+++.++++
T Consensus 223 ----~~~~~~~pedva~~i~~l~s~---~~~~~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 223 ----PLKRNVTIEQVGNAGAFLLSD---LASGVTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ----TTSSCCCHHHHHHHHHHHHSG---GGTTCCSEEEEESTTGGGBCCCC--
T ss_pred ----CcCCCCCHHHHHHHHHHHcCc---ccCCeeeeEEEECCCeeeehhhhhh
Confidence 223467799999999987751 1345789999999998777655543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-18 Score=169.95 Aligned_cols=222 Identities=13% Similarity=0.066 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++...... ......+ ...++.++.+|+.|.+++.++++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESA------EEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHH------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHH------HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999 58988554321000 0000000 12468889999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++++++... +..++|++||...+..
T Consensus 101 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------- 170 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK---------- 170 (283)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS----------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC----------
Confidence 6899999999762 23456788999999999999999875 5679999999876521
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc-----------HHHHHHHhcCCCceEE
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL-----------VPLLVNLAKPGWTKFI 214 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~-----------~~~l~~~~~~g~~~~i 214 (586)
...+...|+.||...|.+.+.++. .+|+++.+++||.+.++..... .+.........
T Consensus 171 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 241 (283)
T 1g0o_A 171 ----AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV----- 241 (283)
T ss_dssp ----SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH-----
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhh-----
Confidence 012357899999999999887753 2589999999999987521100 01111111110
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.......+.+.+|+|++++.++.. ......|+.+++.+|.
T Consensus 242 --~~~p~~r~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 242 --QWSPLRRVGLPIDIARVVCFLASN---DGGWVTGKVIGIDGGA 281 (283)
T ss_dssp --HSCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred --cCCCCCCCcCHHHHHHHHHHHhCc---cccCcCCCEEEeCCCc
Confidence 011223478899999999987751 1234678999998874
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=173.07 Aligned_cols=206 Identities=16% Similarity=0.066 Sum_probs=142.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++|+||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQ--------PALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLA 99 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 346799999999999999999999999 5999955432 210 000000 1346889999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++++++.. .+ ..++|++||...+.
T Consensus 100 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------ 173 (301)
T 3tjr_A 100 DEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV------ 173 (301)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS------
T ss_pred HHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC------
Confidence 5 6899999999762 2345678999999999999998743 34 56999999998762
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHH-----hcCCCceEEE
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNL-----AKPGWTKFII 215 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~-----~~~g~~~~i~ 215 (586)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+.. ...... .....+...+
T Consensus 174 ---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~----~~~~~~~~~~~~~~~~~~~~~ 240 (301)
T 3tjr_A 174 ---------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV----SNSERIRGADYGMSATPEGAF 240 (301)
T ss_dssp ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH----HHHHHHC--------------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc----cccccccchhhccccChhhhc
Confidence 2234678999999988888776543 589999999999976521 111100 0011111222
Q ss_pred cCCCccccccchhHHHHHHHHHHH
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
+......++++++|+|++++.+++
T Consensus 241 ~~~~~~~~~~~pedvA~~i~~~l~ 264 (301)
T 3tjr_A 241 GPLPTQDESVSADDVARLTADAIL 264 (301)
T ss_dssp --------CCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHh
Confidence 333445678999999999999998
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=173.12 Aligned_cols=207 Identities=13% Similarity=0.063 Sum_probs=142.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|+||++++++|+++| ++|+++++.... +.. ....+...-...++.++.+|+.|.+++.++++
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGN-IEE--LAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHH-HHH--HHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 599995543210 000 00000000011357889999999999887775
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHH----HHHHHHHHHhCCC--CEEEEecCccccccCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQG----AKNVVTACRECKV--RRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~g----t~~lleaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||... ...+++..+++|+.+ ++++++.+++.++ +++|++||...+..
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~-------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV-------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC--------
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc--------
Confidence 7999999999752 223467889999999 7788888888886 79999999987621
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
. +..+...|+.+|...|.+.+.++. ..|+++++++||.+.++... ... ........ .....
T Consensus 179 ---~--~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~-------~~~-~~~~~~~~-~~~~~ 244 (279)
T 1xg5_A 179 ---L--PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF-------KLH-DKDPEKAA-ATYEQ 244 (279)
T ss_dssp ---C--SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH-------HHT-TTCHHHHH-HHHC-
T ss_pred ---C--CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh-------hhc-ccChhHHh-hhccc
Confidence 0 224557899999999988876643 36899999999999865310 000 00000000 00112
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
..+++++|+|++++.++.
T Consensus 245 ~~~~~~~dvA~~i~~l~~ 262 (279)
T 1xg5_A 245 MKCLKPEDVAEAVIYVLS 262 (279)
T ss_dssp --CBCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHhc
Confidence 346889999999998887
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=162.82 Aligned_cols=202 Identities=12% Similarity=0.029 Sum_probs=149.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||+|+||++++++|+++| ++|+++++ ++++. . .....+.+|+.|.+++.++++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r--------~~~~~--~-----~~~~~~~~D~~~~~~v~~~~~~~~ 69 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDV--------VENEE--A-----SASVIVKMTDSFTEQADQVTAEVG 69 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEES--------SCCTT--S-----SEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC--------Chhhc--c-----CCcEEEEcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 59999544 33211 0 135677899999998887765
Q ss_pred ------CCCEEEEcccCCC-----C---CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-----N---TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-----~---~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... . ..+++..+++|+.++.++.+++... .-.++|++||...+.
T Consensus 70 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 139 (241)
T 1dhr_A 70 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 139 (241)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc----------
Confidence 5899999999752 1 1235778899999999999988764 125899999998763
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.||...|.+.+.++.+ .|+++++++||.+-.+. ....... ....
T Consensus 140 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~--------~~~~~~~---------~~~~ 197 (241)
T 1dhr_A 140 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM--------NRKSMPE---------ADFS 197 (241)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------HHHHSTT---------SCGG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc--------ccccCcc---------hhhc
Confidence 1234568999999999999988754 46999999999886431 1111111 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.++..+|+|++++.++.. ......|+.+.+.+++
T Consensus 198 ~~~~~~~vA~~v~~l~~~---~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITG---NKRPNSGSLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTT---TTCCCTTCEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcC---CCcCccceEEEEeCCC
Confidence 457789999999887751 1234678899987754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=165.77 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.+........... ..+.. ...++.++.+|+.|.+++.++++
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVV--SEIKA--LGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHH--HHHHH--TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHH--HHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456899999999999999999999999 588885443210000000 00000 13468899999999998887775
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCC--EEEEecCccccccCCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvk--r~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
++|++||+||... ...+++..+++|+.|+.++.+++...-.+ ++|++||......
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 159 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF----------- 159 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------
Confidence 6899999999862 23457888999999999999998876443 9999999763210
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC------------cHHHHHHHhcCCCceEE
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ------------LVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~------------~~~~l~~~~~~g~~~~i 214 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... ...........
T Consensus 160 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 230 (270)
T 3is3_A 160 ---SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH------ 230 (270)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH------
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHh------
Confidence 2245678999999999998877654 58999999999998764210 01111111111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+...+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 231 ---~~p~~r~~~p~dvA~~v~~L~s~---~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 231 ---ASPLHRNGWPQDVANVVGFLVSK---EGEWVNGKVLTLDGGA 269 (270)
T ss_dssp ---HSTTCSCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTC
T ss_pred ---cCCCCCCCCHHHHHHHHHHHcCC---ccCCccCcEEEeCCCC
Confidence 12234567899999999877641 1245779999998864
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=172.07 Aligned_cols=220 Identities=11% Similarity=0.053 Sum_probs=155.0
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+ |+||++++++|+++| ++|+++++... .......+... ..++.++.+|+.|.+++.++++
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~----~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~ 76 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES----LEKRVRPIAQE--LNSPYVYELDVSKEEHFKSLYN 76 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT----THHHHHHHHHH--TTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHHHHHh--cCCcEEEEcCCCCHHHHHHHHH
Confidence 457899999999 999999999999999 59998554321 00000000000 1236889999999998887775
Q ss_pred -------CCCEEEEcccCCCC-----------CCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDLN-----------TDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~-----------~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~ 143 (586)
++|+|||+||.... ..+++..+++|+.|+.++++++...- -.++|++||...+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------ 150 (275)
T 2pd4_A 77 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------ 150 (275)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------
Confidence 57999999997521 23467889999999999999998751 25999999987652
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.||...+.+.+.++.+ +|+++++++||.+.++..... .+.+........
T Consensus 151 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 213 (275)
T 2pd4_A 151 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINA-------- 213 (275)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHS--------
T ss_pred ---------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcC--------
Confidence 1234568999999999998877543 589999999999998753221 122222221111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+.+.+|+|++++.++.. ......|+.+++.++.
T Consensus 214 -p~~~~~~p~dva~~~~~l~s~---~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 214 -PLRKNVSLEEVGNAGMYLLSS---LSSGVSGEVHFVDAGY 250 (275)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred -CcCCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 112356799999999987751 1234678899998874
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=167.70 Aligned_cols=219 Identities=12% Similarity=0.025 Sum_probs=157.2
Q ss_pred CCCCeEEEEcCCCc--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~--IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+ ||++++++|+++| ++|.+.++... .+. ..+.. ...++.++.+|+.|.+++.+++
T Consensus 24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~------~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~ 94 (280)
T 3nrc_A 24 LAGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQF------KDRVEKLCA--EFNPAAVLPCDVISDQEIKDLF 94 (280)
T ss_dssp TTTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTTC------HHHHHHHHG--GGCCSEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCchH------HHHHHHHHH--hcCCceEEEeecCCHHHHHHHH
Confidence 34689999999977 9999999999999 58998554320 000 00001 1135789999999999888777
Q ss_pred c-------CCCEEEEcccCCC------------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCC
Q 007866 83 E-------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~ 140 (586)
+ ++|+|||+||... ...+++..+++|+.++.++++++... +..++|++||.+.+.
T Consensus 95 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~--- 171 (280)
T 3nrc_A 95 VELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK--- 171 (280)
T ss_dssp HHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS---
T ss_pred HHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc---
Confidence 4 4799999999762 22345678999999999999988653 346999999988762
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEE
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~ 215 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+.... .............
T Consensus 172 ------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----- 234 (280)
T 3nrc_A 172 ------------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS----- 234 (280)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHS-----
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcC-----
Confidence 2234578999999999998876543 68999999999999875332 1222333222211
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
....+...+|+|++++.++.. ......|+++++.+|..
T Consensus 235 ----p~~~~~~pedvA~~v~~l~s~---~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 235 ----PLKKNVDIMEVGNTVAFLCSD---MATGITGEVVHVDAGYH 272 (280)
T ss_dssp ----TTCSCCCHHHHHHHHHHTTSG---GGTTCCSCEEEESTTGG
T ss_pred ----CCCCCCCHHHHHHHHHHHhCc---ccCCcCCcEEEECCCcc
Confidence 123467799999999977651 12457899999998764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=165.71 Aligned_cols=231 Identities=15% Similarity=0.006 Sum_probs=158.1
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|+.....+++++||||+|.||++++++|+++| ++|++.|+.... +.. ....+.......++..+.+|+.|.+++.+
T Consensus 1 M~~~~l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~ 76 (265)
T 3lf2_A 1 MKPYDLSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGER-LRA--AESALRQRFPGARLFASVCDVLDALQVRA 76 (265)
T ss_dssp --CCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHHHSTTCCEEEEECCTTCHHHHHH
T ss_pred CCccCcCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HHH--HHHHHHHhcCCceEEEEeCCCCCHHHHHH
Confidence 55555678999999999999999999999999 589985543210 000 00000000122358899999999988877
Q ss_pred Hhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ ++|++||+||... ...+++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 77 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 151 (265)
T 3lf2_A 77 FAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ----- 151 (265)
T ss_dssp HHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----
Confidence 764 5899999999752 2344678899999999999998854 4456899999987752
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC----------cHHHHHHHhcCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ----------LVPLLVNLAKPG 209 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~----------~~~~l~~~~~~g 209 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+.++.... ....+.......
T Consensus 152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (265)
T 3lf2_A 152 ----------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN 221 (265)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH
T ss_pred ----------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc
Confidence 1234578999999999988877543 58999999999998652110 011111111110
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...+...+...+|+|++++.++.. ......|+++++.+|..
T Consensus 222 -------~~~p~~r~~~pedvA~~v~fL~s~---~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 222 -------KQIPLGRLGKPIEAARAILFLASP---LSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp -------TTCTTCSCBCHHHHHHHHHHHHSG---GGTTCCSEEEEESSSCC
T ss_pred -------cCCCcCCCcCHHHHHHHHHHHhCc---hhcCcCCCEEEECCCCc
Confidence 001233467899999999977651 12457899999988753
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=164.35 Aligned_cols=219 Identities=12% Similarity=0.066 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC--CCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl--~d~~~l~~~l~ 83 (586)
..+|+++||||+|+||++++++|+++| ++|.+.|+.... +... ...+.. ....++.++.+|+ .|.+++.++++
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEK-LRQV--ASHINE-ETGRQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH-HHSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh-hcCCCceEEEEecccCCHHHHHHHHH
Confidence 456899999999999999999999999 599995543210 0000 000000 0122678899999 88888777665
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-------
Confidence 6899999999741 12235778999999999999988 556678999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC--CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~--gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+..+...|+.||...+.+.+.++.+. .+++.++.||.+..+ +....... ....
T Consensus 158 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~--------~~~~~~~~---------~~~~ 212 (252)
T 3f1l_A 158 --------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA--------MRASAFPT---------EDPQ 212 (252)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH--------HHHHHCTT---------CCGG
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc--------hhhhhCCc---------cchh
Confidence 12345689999999999888776543 289999999988643 12221111 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHH
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFW 264 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ 264 (586)
.+.+.+|+|.+++.++.. ......|+.+++.+|...++.
T Consensus 213 ~~~~p~dva~~~~~L~s~---~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 213 KLKTPADIMPLYLWLMGD---DSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GSBCTGGGHHHHHHHHSG---GGTTCCSCEEESSCC------
T ss_pred ccCCHHHHHHHHHHHcCc---cccCCCCCEEEeCCCcCCCCC
Confidence 467899999999877751 124577999999998766554
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-17 Score=164.52 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=157.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-c---CCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-L---DPSESNS-LLPDS--LSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l---~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l 78 (586)
..+|+++||||+|+||++++++|+++| ++|+++|+..... + .+..+.. ..... -...++.++.+|+.|.+++
T Consensus 44 l~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 44 LQGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL 122 (317)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 356899999999999999999999999 5999977643100 0 0000000 00000 0134688999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccC
Q 007866 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDG 139 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~ 139 (586)
.++++ ++|+|||+||... ...+++..+++|+.|+.++++++.. .+ -.++|++||...+.
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~-- 200 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR-- 200 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC--
Confidence 88775 6899999999762 2345678899999999999988743 33 35899999988762
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC--c---
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW--T--- 211 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~--~--- 211 (586)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+.++..... .+........ +
T Consensus 201 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~ 265 (317)
T 3oec_A 201 -------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE--KLLKMFLPHLENPTRE 265 (317)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH--HHHHHHCTTCSSCCHH
T ss_pred -------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch--hhhhhhhhhccccchh
Confidence 1234578999999999998877654 589999999999987632110 0011110000 0
Q ss_pred --eEEEcC-CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 212 --KFIIGS-GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 212 --~~i~g~-g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
...... ......|.+++|+|++++.++.. ......|+++++.+|..
T Consensus 266 ~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~---~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 266 DAAELFSQLTLLPIPWVEPEDVSNAVAWLASD---EARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHHhhhccCCCCCCCHHHHHHHHHHHcCC---cccCCCCCEEEECcchh
Confidence 000000 11115688999999999876641 12457899999998754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=165.51 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=135.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCC-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA- 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~- 85 (586)
||+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 70 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG-KATYLTGRSE--------SKLSTVTNCL-SNNVGYRARDLASHQEVEQLFEQLD 70 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCH--------HHHHHHHHTC-SSCCCEEECCTTCHHHHHHHHHSCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHH-hhccCeEeecCCCHHHHHHHHHHHh
Confidence 4789999999999999999999999 5899955432 210 000111 346789999999999999998764
Q ss_pred ---CEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCC---CEEEEecCccccccCCCCCCCCCCCccc
Q 007866 86 ---STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 86 ---D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gv---kr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
|+|||+||... ...+++..+++|+.|+.++++++...-. .++|++||...+.
T Consensus 71 ~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~--------------- 135 (230)
T 3guy_A 71 SIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ--------------- 135 (230)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS---------------
T ss_pred hcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC---------------
Confidence 99999999752 2334677899999999999998865422 2999999998762
Q ss_pred CCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 153 CWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+.... .. .......+++.+|
T Consensus 136 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~---------~~~~~~~~~~~~d 198 (230)
T 3guy_A 136 PKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET--------SG---------KSLDTSSFMSAED 198 (230)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------------CCCHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh--------cC---------CCCCcccCCCHHH
Confidence 2234578999999999998877543 58999999999987653211 00 1112346788999
Q ss_pred HHHHHHHHHH
Q 007866 230 VAHAHVCAAE 239 (586)
Q Consensus 230 va~ai~~ale 239 (586)
+|++++.++.
T Consensus 199 vA~~i~~l~~ 208 (230)
T 3guy_A 199 AALMIHGALA 208 (230)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-17 Score=161.59 Aligned_cols=234 Identities=14% Similarity=0.084 Sum_probs=159.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc--------cCCCCCCC-CCCCC--CCCCCeEEEEccCCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--------LDPSESNS-LLPDS--LSSGRAEYHQVDVRD 74 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~--------l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d 74 (586)
..+|+++||||+|.||++++++|+++| ++|+++|+..... ..|..+.. ..... -...++..+.+|+.|
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 87 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD 87 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 457899999999999999999999999 5999977652100 00100000 00000 013468899999999
Q ss_pred HHHHHHHhc-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC----C-CCEEEEecCcc
Q 007866 75 ISQIKKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC----K-VRRLVYNSTAD 134 (586)
Q Consensus 75 ~~~l~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~----g-vkr~I~~SS~~ 134 (586)
.+++.++++ ++|++||+||... ...+++..+++|+.|+.++++++... + -.++|++||..
T Consensus 88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (286)
T 3uve_A 88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG 167 (286)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence 999887775 6899999999752 22346779999999999999987543 3 45899999998
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcC---
Q 007866 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKP--- 208 (586)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~--- 208 (586)
.+. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+....... ......
T Consensus 168 ~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~ 230 (286)
T 3uve_A 168 GLK---------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGT--FKMFRPDLE 230 (286)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHH--HHHHCTTSS
T ss_pred hcc---------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccch--hhhcccccc
Confidence 762 1234568999999999988877543 68999999999999875432110 011100
Q ss_pred -CCc-----eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 209 -GWT-----KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 209 -g~~-----~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+ ........+ ..+.+.+|+|++++.++.. ......|+++++.+|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~---~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 231 NPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASD---EARYITGVTLPIDAGSCL 285 (286)
T ss_dssp SCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred ccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCc---cccCCcCCEEeECCcccc
Confidence 000 000011112 4678999999999987741 124578999999987543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=168.77 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=150.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++++||||+|.||++++++|+++| ++|.+.+.. ..... ..... -...++..+.+|+.|.+++.++++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAG-------KAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESS-------CSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCC-------CHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46789999999999999999999999 488874322 11100 00000 013468899999999999887775
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.|+.++++++... .-.++|++||...+..
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 168 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL--------- 168 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHC---------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccC---------
Confidence 6899999999762 12346778889999999999988764 2248999999877531
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.||+..+.+.+.++.+ .|+++.++.||.+..+.... .......... ...+...
T Consensus 169 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---------~~~p~~r 233 (267)
T 3u5t_A 169 ------HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFA---------KLAPLER 233 (267)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHH---------TSSTTCS
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHH---------hcCCCCC
Confidence 234568999999999998877543 58999999999998764221 1111111111 1223345
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
+..++|+|++++.++.. ......|+++++.+|
T Consensus 234 ~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 234 LGTPQDIAGAVAFLAGP---DGAWVNGQVLRANGG 265 (267)
T ss_dssp CBCHHHHHHHHHHHHST---TTTTCCSEEEEESSS
T ss_pred CcCHHHHHHHHHHHhCc---cccCccCCEEEeCCC
Confidence 77899999999877641 123468999999876
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=168.29 Aligned_cols=221 Identities=12% Similarity=0.036 Sum_probs=159.7
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC-CCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL-SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l-~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+| .||++++++|+++| ++|.+.|+.. ... ...... ...++.++.+|+.|.+++.++
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSE--------TFKKRVDPLAESLGVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSG--------GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCCh--------HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Confidence 3468999999998 99999999999999 5899855532 100 000000 113467899999999998877
Q ss_pred hc-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEecCccccccCCC
Q 007866 82 LE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNSTADVVFDGSH 141 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~SS~~vyg~~~~ 141 (586)
++ ++|++||+||... ...++...+++|+.++.++++++...-. .++|++||...+.
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~---- 174 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK---- 174 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----
T ss_pred HHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc----
Confidence 75 5899999999752 2335778999999999999999876533 4999999987752
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEc
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIG 216 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g 216 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+....... ..........
T Consensus 175 -----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~------ 237 (296)
T 3k31_A 175 -----------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNS------ 237 (296)
T ss_dssp -----------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHS------
T ss_pred -----------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcC------
Confidence 1234578999999999998877543 58999999999999886543321 2222222211
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
....+...+|+|++++.++.. ......|+++++.+|..++
T Consensus 238 ---p~~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 238 ---PLRRNTTLDDVGGAALYLLSD---LGRGTTGETVHVDCGYHVV 277 (296)
T ss_dssp ---TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGGC
T ss_pred ---CCCCCCCHHHHHHHHHHHcCC---ccCCccCCEEEECCCcccc
Confidence 123456799999999987751 1245789999999886443
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=163.68 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=135.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|.||++++++|+++| ++|+++|+.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNG--------EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFL 75 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSG--------GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHH
Confidence 457899999999999999999999999 5999955432 210 000000 1346889999999999998887
Q ss_pred c------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 83 E------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 147 (252)
T 3h7a_A 76 NAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR-------- 147 (252)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC--------
T ss_pred HHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC--------
Confidence 6 5799999999752 23356788999999999988877 345667999999987752
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceE-EEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLT-CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~-~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+..+...|+.||+..+.+.+.++.+ .|+++ .++.||.+..+......+.... ........
T Consensus 148 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~~ 211 (252)
T 3h7a_A 148 -------GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFG---------KDALANPD 211 (252)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------
T ss_pred -------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhhh---------hhhhcCCc
Confidence 1234578999999999888877543 58999 8999999876643322221111 11112223
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
. +.+.+|+|++++.++.
T Consensus 212 ~-~~~pedvA~~~~~l~s 228 (252)
T 3h7a_A 212 L-LMPPAAVAGAYWQLYQ 228 (252)
T ss_dssp ---CCHHHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHh
Confidence 4 8899999999998887
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=163.74 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=138.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++||||||+|+||++++++|+++| ++|+++++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 97 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDV--------EKLRAVEREIVAAGGEAESHACDLSHSDAIAAFA 97 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHH
Confidence 356899999999999999999999999 5899855432 210 000000 1246889999999999988776
Q ss_pred c-------CCCEEEEcccCC--------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATD--------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~--------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ ++|+|||+||.. ....+++..+++|+.|+.++++++. +.+..++|++||...+.
T Consensus 98 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------ 171 (262)
T 3rkr_A 98 TGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN------ 171 (262)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC------
T ss_pred HHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC------
Confidence 5 489999999973 1233467899999999999998864 35678999999987752
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+..+...... ....
T Consensus 172 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-----------------~~~~ 225 (262)
T 3rkr_A 172 ---------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLS-----------------AKKS 225 (262)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccc-----------------cccc
Confidence 2245678999999999998877543 6899999999998765321110 0112
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
...++..+|+|++++.++.
T Consensus 226 ~~~~~~p~dvA~~v~~l~s 244 (262)
T 3rkr_A 226 ALGAIEPDDIADVVALLAT 244 (262)
T ss_dssp ---CCCHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHhc
Confidence 2446789999999998776
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=169.32 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCc--hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGF--VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~--IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+|+ ||++++++|+++| ++|.+.++.... . .....+.. ...++.++.+|+.|.+++.++++
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~--~--~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDAL--K--KRVEPLAE--ELGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHH--H--HHHHHHHH--HHTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHH--H--HHHHHHHH--hcCCceEEECCCCCHHHHHHHHH
Confidence 45689999999998 9999999999999 588885443210 0 00000000 11357889999999999887775
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~ 143 (586)
++|++||+||... ...+++..+++|+.++.++++++...- -.++|++||...+.
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~------ 175 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK------ 175 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS------
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc------
Confidence 6899999999752 234567899999999999999987642 34999999988763
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.||+..+.+.+.++.+ +|+++.+++||.+.++.... .............
T Consensus 176 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 238 (293)
T 3grk_A 176 ---------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA-------- 238 (293)
T ss_dssp ---------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHS--------
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcC--------
Confidence 1234578999999999998877543 58999999999998875332 1122222222211
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
....+...+|+|++++.++.. ......|+.+++.+|..+
T Consensus 239 -p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 239 -PLRRTVTIDEVGDVGLYFLSD---LSRSVTGEVHHADSGYHV 277 (293)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGGG
T ss_pred -CCCCCCCHHHHHHHHHHHcCc---cccCCcceEEEECCCccc
Confidence 123467799999999887751 124578999999988643
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=165.34 Aligned_cols=224 Identities=12% Similarity=0.040 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-CCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-SLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|.||++++++|+++| ++|.+.++.. |..+. ......+ ...++.++.+|+.|.+++.+++
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQA-----KDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCG-----GGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCc-----cCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 456899999999999999999999999 5888855421 11000 0000000 1346888999999999988877
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+ ++|++||+||... ...+++..+++|+.|+.++.+++... +-.++|++||.+.+..
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~-------- 154 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY-------- 154 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH--------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC--------
Confidence 5 6899999999752 23446788899999999999999875 4468999999887642
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
..+...|+.||+..+.+.+.++.+ +|+++.++.||.+..+. .....................
T Consensus 155 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~--------~~~~~~~~~~~~~~~~~~~~r 219 (262)
T 3ksu_A 155 -------TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSF--------FYGQETKESTAFHKSQAMGNQ 219 (262)
T ss_dssp -------HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHH--------HHTCC------------CCCC
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcc--------ccccCchHHHHHHHhcCcccC
Confidence 123567999999999998877543 58999999999986542 111111111111222233445
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
+...+|+|++++.++.. .....|+.+++.++....
T Consensus 220 ~~~pedvA~~v~~L~s~----~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 220 LTKIEDIAPIIKFLTTD----GWWINGQTIFANGGYTTR 254 (262)
T ss_dssp SCCGGGTHHHHHHHHTT----TTTCCSCEEEESTTCCCC
T ss_pred CCCHHHHHHHHHHHcCC----CCCccCCEEEECCCccCC
Confidence 78899999999987651 245779999998876443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-20 Score=190.68 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=134.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+|||+||||+||||++++..|+++|+. +|+++|+.... .+.. +...+ +......++ +|+.+.+.+.++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~--~~~~--g~~~d-l~~~~~~~~-~di~~~~~~~~a 77 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM--KALE--GVVME-LEDCAFPLL-AGLEATDDPKVA 77 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHH--HHHHH-HHTTTCTTE-EEEEEESCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCch--hhcc--chhhh-hhccccccc-CCeEeccChHHH
Confidence 579999999999999999999998852 89997764210 0000 00000 000111222 577665667788
Q ss_pred hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEecCccc-cccCCCCCCCCCCCcccCCCCC
Q 007866 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADV-VFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~SS~~v-yg~~~~~~~~~~E~~p~~~~p~ 157 (586)
++++|+|||+||... ...++..+++.|+.+++++++++++++ .+ +++++|+..- ... ...|..+ ...|.
T Consensus 78 ~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~------~~~~~~~-~~~p~ 150 (327)
T 1y7t_A 78 FKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNAL------IAYKNAP-GLNPR 150 (327)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH------HHHHTCT-TSCGG
T ss_pred hCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHH------HHHHHcC-CCChh
Confidence 999999999999873 356678899999999999999999986 65 8888887641 110 0111110 23567
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~ 211 (586)
++|+.||..+|++...+++..|++.+++||+++||++....++.+......|++
T Consensus 151 ~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~ 204 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRP 204 (327)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEE
T ss_pred heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCee
Confidence 789999999999998888778999999999999999876666655554445543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=164.95 Aligned_cols=218 Identities=13% Similarity=0.029 Sum_probs=153.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCC----HHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRD----ISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d----~~~ 77 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++... +.. .....+ ...++.++.+|+.| .++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~-------~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~ 92 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSA-------EAAVSLADELNKERSNTAVVCQADLTNSNVLPAS 92 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCH-------HHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCch-------HHHHHHHHHHHhhcCCceEEEEeecCCccCCHHH
Confidence 456899999999999999999999999 59998554320 100 000000 12468899999999 888
Q ss_pred HHHHhc-------CCCEEEEcccCCCC---------C--------CChhHHHHHHHHHHHHHHHHHHhC----C------
Q 007866 78 IKKVLE-------GASTVFYVDATDLN---------T--------DDFYNCYMIIVQGAKNVVTACREC----K------ 123 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~~---------~--------~~~~~~~~~Nv~gt~~lleaa~~~----g------ 123 (586)
+.++++ ++|+|||+||.... . .+++..+++|+.++.++.+++... +
T Consensus 93 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 172 (288)
T 2x9g_A 93 CEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSS 172 (288)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 877765 68999999997521 1 124568899999999999887643 2
Q ss_pred CCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH
Q 007866 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP 200 (586)
Q Consensus 124 vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~ 200 (586)
..++|++||...+. +..+...|+.||+..+.+.+.++.+ +|+++.+++||.+.++. .. .+
T Consensus 173 ~g~iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~-~~ 235 (288)
T 2x9g_A 173 NLSIVNLCDAMVDQ---------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM-GE 235 (288)
T ss_dssp CEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS-CH
T ss_pred CeEEEEEecccccC---------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc-Ch
Confidence 45999999987762 1234568999999888888776543 58999999999999886 32 12
Q ss_pred HHHHHhcCCCceEEEcCCCccccc-cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 201 LLVNLAKPGWTKFIIGSGENMSDF-TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 201 ~l~~~~~~g~~~~i~g~g~~~~~~-i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.......... ....+ ...+|+|++++.++.. ......|+.+++.++..
T Consensus 236 ~~~~~~~~~~---------p~~r~~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 236 EEKDKWRRKV---------PLGRREASAEQIADAVIFLVSG---SAQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHHHHHHTC---------TTTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred HHHHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCc---cccCccCCEEEECcchh
Confidence 2222221111 11224 6899999999987751 12457789999988753
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-18 Score=168.42 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=136.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++++||||+|+||++++++|+++| ++|.+.|+.. +.. .....+ ..++.++.+|+.|.+++.++++
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 95 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRL--------DALQETAAEI-GDDALCVPTDVTDPDSVRALFTA 95 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-TSCCEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-CCCeEEEEecCCCHHHHHHHHHH
Confidence 356889999999999999999999999 5999955432 110 000001 2468899999999999888775
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CC--CCEEEEecCccccccCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--vkr~I~~SS~~vyg~~~~~~ 143 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++.. .+ -.++|++||...+.
T Consensus 96 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------ 169 (272)
T 4dyv_A 96 TVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------ 169 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS------
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC------
Confidence 7999999999752 2234578999999998888876644 33 35999999987762
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+........... . .....
T Consensus 170 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~---------~-~~~~~ 230 (272)
T 4dyv_A 170 ---------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAGVPQ---------A-DLSIK 230 (272)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcccchh---------h-hhccc
Confidence 2245678999999999998877543 589999999999987643221111000 0 01122
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
...+.+++|+|++++.++.
T Consensus 231 ~~~~~~pedvA~~v~fL~s 249 (272)
T 4dyv_A 231 VEPVMDVAHVASAVVYMAS 249 (272)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhC
Confidence 3457899999999998887
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=163.38 Aligned_cols=221 Identities=13% Similarity=0.024 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC--CCCCCC---CCCCeEEEEccCCCHHHH
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS--LLPDSL---SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~--~~~~~l---~~~~~~~~~~Dl~d~~~l 78 (586)
..+++++||||+ |.||++++++|+++| ++|.+.++. .... .....+ ...++.++.+|+.|.+++
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v 88 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYAS--------RAQGAEENVKELEKTYGIKAKAYKCQVDSYESC 88 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBSS--------SSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeCC--------cchhHHHHHHHHHHhcCCceeEEecCCCCHHHH
Confidence 357899999999 899999999999999 588884433 2210 000000 134688899999999988
Q ss_pred HHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCC
Q 007866 79 KKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~ 140 (586)
.++++ ++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||.+.+...
T Consensus 89 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 167 (267)
T 3gdg_A 89 EKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN- 167 (267)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-
Confidence 87765 5799999999762 23456789999999999999987 44566799999998765211
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDG--LLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~g--l~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
...+...|+.||+..+.+.+.++.+.+ +++.++.||.+..+......+.........
T Consensus 168 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~--------- 226 (267)
T 3gdg_A 168 ------------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSM--------- 226 (267)
T ss_dssp ------------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTT---------
T ss_pred ------------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhc---------
Confidence 113457899999999999887764432 899999999987664332223333333222
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+...+.+.+|+|++++.++.. ......|+.+++.+|..
T Consensus 227 ~~~~r~~~~~dva~~~~~l~s~---~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 227 IPMGRDGLAKELKGAYVYFASD---ASTYTTGADLLIDGGYT 265 (267)
T ss_dssp STTSSCEETHHHHHHHHHHHST---TCTTCCSCEEEESTTGG
T ss_pred CCCCCCcCHHHHHhHhheeecC---ccccccCCEEEECCcee
Confidence 2345577899999999877751 13457799999988753
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=164.12 Aligned_cols=233 Identities=13% Similarity=0.043 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc----cCCCCCCC-CCCCC--CCCCCeEEEEccCCCHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ----LDPSESNS-LLPDS--LSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~----l~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~l 78 (586)
..+++++||||+|.||++++++|+++| ++|+++|+..... ..|..+.. ..... -...++..+.+|+.|.+++
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 356899999999999999999999999 5999977653210 00111000 00000 0134688999999999998
Q ss_pred HHHhc-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCcccccc
Q 007866 79 KKVLE-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFD 138 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~-----gvkr~I~~SS~~vyg~ 138 (586)
.++++ ++|++||+||... ...+++..+++|+.|+.++.+++... +-.++|++||...+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~- 183 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR- 183 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-
Confidence 87775 6899999999752 12346789999999999999987542 356999999988762
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCC---Cce
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG---WTK 212 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g---~~~ 212 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+.++....... ....... ...
T Consensus 184 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~ 247 (299)
T 3t7c_A 184 --------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPT--YRMFRPDLENPTV 247 (299)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHH--HHHHCTTSSSCCH
T ss_pred --------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccch--hhhhhhhhccchh
Confidence 1234568999999999988877543 48999999999999875432110 0000000 000
Q ss_pred E------EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 213 F------IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 213 ~------i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
. ......+ ..+...+|+|++++.++.. ......|+++++.+|..
T Consensus 248 ~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 248 EDFQVASRQMHVLP-IPYVEPADISNAILFLVSD---DARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred hHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCc---ccccCcCCEEeeCCCcc
Confidence 0 0001111 3577899999999987751 12347799999998754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=162.35 Aligned_cols=234 Identities=15% Similarity=0.091 Sum_probs=157.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc--c---CCCCCCC-CCCCC--CCCCCeEEEEccCCCHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ--L---DPSESNS-LLPDS--LSSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~--l---~r~~~~~-~~~~~--l~~~~~~~~~~Dl~d~~~ 77 (586)
..+++++||||+|.||++++++|+++| ++|.++|+..... . .++.+.. ..... -...++..+.+|+.|.++
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 457899999999999999999999999 5999977632100 0 0010000 00000 013468899999999998
Q ss_pred HHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCcccccc
Q 007866 78 IKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFD 138 (586)
Q Consensus 78 l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~ 138 (586)
+.++++ ++|++||+||... ...+++..+++|+.|+.++++++.. .+ -.++|++||...+.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~- 166 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK- 166 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC-
Confidence 887765 5899999999862 2345678899999999999987543 33 45899999998762
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC-cHHHHHHHhcCCC-ceE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ-LVPLLVNLAKPGW-TKF 213 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~-~~~~l~~~~~~g~-~~~ 213 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+.... ............. ...
T Consensus 167 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 232 (277)
T 3tsc_A 167 --------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSH 232 (277)
T ss_dssp --------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTCGGGTT
T ss_pred --------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhcccccHHHHH
Confidence 1234568999999999998877643 58999999999998775332 1111111111110 000
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
......+. .+.+.+|+|++++.++.. ......|+++++.+|.
T Consensus 233 ~~~~~~p~-r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 233 VLTPFLPD-WVAEPEDIADTVCWLASD---ESRKVTAAQIPVDQGS 274 (277)
T ss_dssp TTCCSSSC-SCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTG
T ss_pred HhhhccCC-CCCCHHHHHHHHHHHhCc---cccCCcCCEEeeCCCc
Confidence 11111122 378999999999987751 1245779999998874
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=162.28 Aligned_cols=212 Identities=15% Similarity=0.067 Sum_probs=146.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 70 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQ--------ERLQELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHh-cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999 5999855432 110 000011 1368899999999999998875
Q ss_pred ---CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ---~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 71 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------- 139 (248)
T 3asu_A 71 EWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------- 139 (248)
T ss_dssp TTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc-----------
Confidence 5899999999641 123467889999999999988775 45678999999987752
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCccc-CCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFG-PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G-~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.||...|.+.+.++. ..|+++.+++||.+.| +........-.... . ... ....+
T Consensus 140 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~-~----~~~----~~~~~ 206 (248)
T 3asu_A 140 ----PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA-E----KTY----QNTVA 206 (248)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------------------------CC
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHH-H----HHH----hccCC
Confidence 123456899999999999887653 3589999999999984 43211000000000 0 000 01234
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
++.+|+|++++.++.. .....+..+.+.+.
T Consensus 207 ~~p~dvA~~v~~l~s~----~~~~~g~~i~v~~~ 236 (248)
T 3asu_A 207 LTPEDVSEAVWWVSTL----PAHVNINTLEMMPV 236 (248)
T ss_dssp BCHHHHHHHHHHHHHS----CTTCCCCEEEECCT
T ss_pred CCHHHHHHHHHHHhcC----CccceeeEEEEccc
Confidence 6899999999988862 24566777777653
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=167.24 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=156.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHH------
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDIS------ 76 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~------ 76 (586)
.+++++||||+|+||++++++|+++| ++|++++. |+.+.. .....+ ...++.++.+|+.|.+
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~-------r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~ 116 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYH-------RSAAEANALSATLNARRPNSAITVQADLSNVATAPVSG 116 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEES-------SCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcC-------CCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccc
Confidence 45899999999999999999999999 59988551 222100 000000 1246889999999988
Q ss_pred -----------HHHHHhc-------CCCEEEEcccCCCC---------------------CCChhHHHHHHHHHHHHHHH
Q 007866 77 -----------QIKKVLE-------GASTVFYVDATDLN---------------------TDDFYNCYMIIVQGAKNVVT 117 (586)
Q Consensus 77 -----------~l~~~l~-------~~D~Vih~aa~~~~---------------------~~~~~~~~~~Nv~gt~~lle 117 (586)
++.++++ ++|+|||+||.... ..+++..+++|+.++.++++
T Consensus 117 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 196 (328)
T 2qhx_A 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK 196 (328)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 8877765 68999999997521 23356789999999999988
Q ss_pred HHH----hCC------CCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEE
Q 007866 118 ACR----ECK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCA 184 (586)
Q Consensus 118 aa~----~~g------vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~i 184 (586)
++. +.+ ..++|++||...+. +..+...|+.+|+..+.+.+.++.+ .|+++++
T Consensus 197 ~~~~~m~~~~~~~~~~~g~IV~isS~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~ 261 (328)
T 2qhx_A 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG 261 (328)
T ss_dssp HHHHHHHHSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred HHHHHHHhcCCcCCCCCcEEEEECchhhcc---------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 775 345 67999999997752 1234568999999999998877543 5899999
Q ss_pred EeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc-cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 185 LRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 185 lRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
++||.+.++. ... +..........+ .. .+...+|+|++++.++.. ......|+.+++.++..
T Consensus 262 v~PG~v~T~~-~~~-~~~~~~~~~~~p---------~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 262 VGPGLSVLVD-DMP-PAVWEGHRSKVP---------LYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYS 324 (328)
T ss_dssp EEESSBSCCC-CSC-HHHHHHHHTTCT---------TTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred EecCcccCCc-ccc-HHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCc---cccCccCcEEEECCCcc
Confidence 9999999886 322 333333322211 12 367899999999988751 12456789999988753
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-17 Score=165.17 Aligned_cols=220 Identities=14% Similarity=0.129 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
.+|+++||||+|.||++++++|+++|+ .+|++.++.... +.. ....+.......++.++.+|+.|.+++.++++
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~-~~~--~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEK-LEE--LKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHH-HHH--HHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHH-HHH--HHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999983 288885443210 000 00000000113468889999999999888876
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------- 180 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD-------- 180 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS--------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC--------
Confidence 4799999999652 23356889999999999999987 445677999999987752
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+... .............
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------- 244 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVYKDT--------- 244 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHHTTS---------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhhccc---------
Confidence 2234578999999999998877543 6899999999999875310 0111111111111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+..+|+|++++.++.. ......|+++.+.++++
T Consensus 245 ----~p~~pedvA~~v~~l~s~---~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 ----TPLMADDVADLIVYATSR---KQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ----CCEEHHHHHHHHHHHHTS---CTTEEEEEEEEEETTEE
T ss_pred ----CCCCHHHHHHHHHHHhCC---CCCeEecceEEeeCCCC
Confidence 123799999999988761 12335578888888764
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-18 Score=169.68 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=153.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+++++||||+|.||++++++|+++| ++|++.|+.. +.. .....+ ...++..+.+|+.|.+++.+++
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 101 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKP--------GSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLI 101 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESST--------TTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCH--------HHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999 5999955432 210 000000 2356889999999988887776
Q ss_pred c------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 83 E------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ~------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+ ++|++||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-------- 173 (275)
T 4imr_A 102 ERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR-------- 173 (275)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------
T ss_pred HHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC--------
Confidence 5 6899999999752 23456788999999999999987 345667999999988762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH---HHHHHHhcCCCceEEEcCCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV---PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~---~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||+..+.+.+.++.+ .|+++.+++||.+..+...... +.......... .
T Consensus 174 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~ 238 (275)
T 4imr_A 174 -------PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL--------N 238 (275)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH--------S
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc--------C
Confidence 1234567999999999988877543 4899999999999765311100 11111111100 0
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...-+...+|+|++++.++.. ......|+++++.+|
T Consensus 239 p~~r~~~pedvA~~v~fL~s~---~a~~itG~~i~vdGG 274 (275)
T 4imr_A 239 WMGRAGRPEEMVGAALFLASE---ACSFMTGETIFLTGG 274 (275)
T ss_dssp TTCSCBCGGGGHHHHHHHHSG---GGTTCCSCEEEESSC
T ss_pred ccCCCcCHHHHHHHHHHHcCc---ccCCCCCCEEEeCCC
Confidence 112356799999999977651 124567999999876
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=158.99 Aligned_cols=209 Identities=11% Similarity=0.063 Sum_probs=148.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~---l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|++++||||+|+||++++++|+++| ++|.+.++.. ++. ..... ....++.++.+|+.|.+++.++++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDG-YALALGARSV--------DRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 6899999999999999999999999 5898854432 210 00000 013468899999999999988876
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... ...+++..+++|+.|+.++++++... +-.++|++||...+.
T Consensus 73 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------- 143 (235)
T 3l77_A 73 KVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR--------- 143 (235)
T ss_dssp -HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---------
T ss_pred HHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc---------
Confidence 6899999999862 23456788999999999999988542 235777777766542
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.+|+..+.+.+.+.. ..|+++.+++||.+-.+...... .......++
T Consensus 144 ------~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~-----------------~~~~~~~~~ 200 (235)
T 3l77_A 144 ------LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP-----------------GKPKEKGYL 200 (235)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS-----------------CCCGGGTCB
T ss_pred ------cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC-----------------CcccccCCC
Confidence 112346899999999999888632 35899999999999765322110 011223578
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+|+|++++.++... .....++.....++++
T Consensus 201 ~p~dva~~v~~l~~~~---~~~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 201 KPDEIAEAVRCLLKLP---KDVRVEELMLRSVYQR 232 (235)
T ss_dssp CHHHHHHHHHHHHTSC---TTCCCCEEEECCTTSC
T ss_pred CHHHHHHHHHHHHcCC---CCCccceEEEeecccC
Confidence 8999999999888721 2234566655555443
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=163.40 Aligned_cols=229 Identities=16% Similarity=0.090 Sum_probs=150.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.... +... ...+.. ...++..+.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREA-LEKA--EASVRE--KGVEARSYVCDVTSEEAVIGTVDSV 78 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHT--TTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHH--HHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 467899999999999999999999999 589985543210 0000 000000 12368889999999998877665
Q ss_pred -----CCCEEEEcccCC-C-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|+|||+||.. . ...+++..+++|+.++.++++++.. .+..++|++||...+..
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 150 (262)
T 1zem_A 79 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG-------- 150 (262)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC--------
T ss_pred HHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC--------
Confidence 689999999964 1 2334678899999999999988754 35679999999877631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcC---C-Cc--e-EEEc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKP---G-WT--K-FIIG 216 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~---g-~~--~-~i~g 216 (586)
..+...|+.||...+.+.+.++. .+|+++.+++||.+..+........+...... . .. . ....
T Consensus 151 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (262)
T 1zem_A 151 -------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMI 223 (262)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHH
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHH
Confidence 12356899999998888776653 36899999999988654211100000000000 0 00 0 0000
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+...+...+|+|++++.++.. ......|+.+.+.+|
T Consensus 224 ~~~p~~r~~~p~dvA~~v~~l~s~---~~~~itG~~i~vdGG 262 (262)
T 1zem_A 224 GSVPMRRYGDINEIPGVVAFLLGD---DSSFMTGVNLPIAGG 262 (262)
T ss_dssp HTSTTSSCBCGGGSHHHHHHHHSG---GGTTCCSCEEEESCC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCc---hhcCcCCcEEecCCC
Confidence 011122367899999999877651 123467888888764
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=160.88 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=137.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++++||||+|.||++++++|+++| ++|++.++.. ++. .....+ ...++..+.+|+.|.+++.++++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 73 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQ--------ARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQ 73 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999999999 5899855432 100 000000 12457889999999998887765
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 74 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------- 145 (264)
T 3tfo_A 74 AAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS-------- 145 (264)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc--------
Confidence 6899999999762 234567889999999998888764 34667999999998762
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC-CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI-DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.||...+.+.+.++.+ .|+++.+++||.+..+........ ....... .....+
T Consensus 146 -------~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~--------~~~~~~~--~~~~~~ 208 (264)
T 3tfo_A 146 -------VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHE--------ETMAAMD--TYRAIA 208 (264)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------C
T ss_pred -------cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccch--------hHHHHHH--hhhccC
Confidence 1234568999999999998877643 389999999999976643211110 0000000 011124
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
...+|+|++++.++.
T Consensus 209 ~~pedvA~~v~~l~s 223 (264)
T 3tfo_A 209 LQPADIARAVRQVIE 223 (264)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 689999999999887
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-18 Score=166.18 Aligned_cols=204 Identities=12% Similarity=0.043 Sum_probs=129.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH---HHh-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK---KVL- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~---~~l- 82 (586)
.+++++||||+|+||++++++|.+ | +.|+++++. ++. ........++..+.+|+.|.+... +.+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r~--------~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGRN--------PEH--LAALAEIEGVEPIESDIVKEVLEEGGVDKLK 71 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEESC--------HHH--HHHHHTSTTEEEEECCHHHHHHTSSSCGGGT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeCC--------HHH--HHHHHhhcCCcceecccchHHHHHHHHHHHH
Confidence 468999999999999999999988 7 488885443 221 000111246889999998875421 222
Q ss_pred --cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 83 --EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 83 --~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
.++|+|||+||... ...+++..+++|+.++.++.+++. +.+ .++|++||...+..
T Consensus 72 ~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~----------- 139 (245)
T 3e9n_A 72 NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGP----------- 139 (245)
T ss_dssp TCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC------------------
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccC-----------
Confidence 25899999999862 123467789999999888887764 334 69999999987631
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
..+...|+.||...|.+.+.++.+ .|+++.+++||.+.++........ .+.......+++
T Consensus 140 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-------------~~~~~~~~~~~~ 202 (245)
T 3e9n_A 140 ----HPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDS-------------QGTNFRPEIYIE 202 (245)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------CCGGGSC
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhh-------------hhcccccccCCC
Confidence 234578999999999998877653 689999999999987643222111 011112345789
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
++|+|++++.+++ ....+.++|+.-
T Consensus 203 p~dvA~~i~~l~~------~~~~~~~~~i~~ 227 (245)
T 3e9n_A 203 PKEIANAIRFVID------AGETTQITNVDV 227 (245)
T ss_dssp HHHHHHHHHHHHT------SCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHc------CCCccceeeeEE
Confidence 9999999999887 334567888753
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=162.12 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=141.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~ 75 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEG-AAVAIAARRV--------EKLRALGDELTAAGAKVHVLELDVADRQGVDAAV 75 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999999999 5999855432 100 000000 1246888999999999888776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++.. .+ .++|++||...+.
T Consensus 76 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------- 147 (247)
T 2jah_A 76 ASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRV------- 147 (247)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTC-------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcC-------
Confidence 5 6899999999752 1234577899999999999988753 45 7999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.||...+.+.+.++. .+|+++++++||.+.++...... ........ . .++
T Consensus 148 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~-~----~~~---- 210 (247)
T 2jah_A 148 --------NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYE-Q----RIS---- 210 (247)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHH-H----HTT----
T ss_pred --------CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHH-h----ccc----
Confidence 123456899999999888776643 25899999999999876422111 11111110 0 000
Q ss_pred cccccchhHHHHHHHHHHH
Q 007866 221 MSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale 239 (586)
...+++.+|+|++++.++.
T Consensus 211 ~~~~~~pedvA~~v~~l~s 229 (247)
T 2jah_A 211 QIRKLQAQDIAEAVRYAVT 229 (247)
T ss_dssp TSCCBCHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhC
Confidence 1125889999999998886
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=163.04 Aligned_cols=189 Identities=14% Similarity=0.020 Sum_probs=137.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ..++.++.+|+.|.+++.++++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~ 71 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRRY--------QRLQQQELLL-GNAVIGIVADLAHHEDVDVAFAAA 71 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHH-GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-cCCceEEECCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 5999955432 210 000111 1258899999999998887765
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||... ...+++..+++|+.|+.++.+++... + .++|++||...+.
T Consensus 72 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~---------- 140 (235)
T 3l6e_A 72 VEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQV---------- 140 (235)
T ss_dssp HHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCS----------
T ss_pred HHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcC----------
Confidence 5899999999751 23456789999999999999887532 2 3999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.||+..+.+.+.++. ..|+++.+++||.+-.+...... . .....+
T Consensus 141 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--------~----------~~~~~~ 197 (235)
T 3l6e_A 141 -----GKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTD--------H----------VDPSGF 197 (235)
T ss_dssp -----SCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------------------------C
T ss_pred -----CCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccC--------C----------CCCcCC
Confidence 123456899999999999887754 36899999999988655321100 0 011257
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
...+|+|++++.++.
T Consensus 198 ~~pedvA~~v~~l~~ 212 (235)
T 3l6e_A 198 MTPEDAAAYMLDALE 212 (235)
T ss_dssp BCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHh
Confidence 889999999998775
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=158.75 Aligned_cols=220 Identities=12% Similarity=0.096 Sum_probs=156.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
++.+++++||||+|.||++++++|+++|+ +|.+.+. |..+.. .....+ ...++..+.+|+.|.+++.++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYG-------NRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEAL 75 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES-------SCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC-------CchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHH
Confidence 34578999999999999999999999994 8877322 211100 000000 134578899999999887776
Q ss_pred hcC-------------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccC
Q 007866 82 LEG-------------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDG 139 (586)
Q Consensus 82 l~~-------------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~ 139 (586)
++. +|+|||+||... ...+++..+++|+.++.++++++... +-.++|++||...+.
T Consensus 76 ~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~-- 153 (255)
T 3icc_A 76 YSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI-- 153 (255)
T ss_dssp HHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS--
T ss_pred HHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc--
Confidence 642 899999999762 22345678899999999999998765 345899999988763
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEE
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFI 214 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i 214 (586)
+......|+.||+..+.+.+.++.+ .|+++.+++||.+..+....... .+.......
T Consensus 154 -------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~----- 215 (255)
T 3icc_A 154 -------------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTI----- 215 (255)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHT-----
T ss_pred -------------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhcc-----
Confidence 1234578999999999998877543 58999999999998875433211 112221111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.....+.+++|+|++++.++.. ......|+++++.+|.
T Consensus 216 ----~~~~~~~~~~dva~~~~~l~s~---~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 216 ----SAFNRLGEVEDIADTAAFLASP---DSRWVTGQLIDVSGGS 253 (255)
T ss_dssp ----STTSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESSST
T ss_pred ----CCcCCCCCHHHHHHHHHHHhCc---ccCCccCCEEEecCCe
Confidence 2234567899999999877641 1345789999998875
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=162.10 Aligned_cols=213 Identities=14% Similarity=0.026 Sum_probs=144.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHHHHhcC--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLEG-- 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~~-- 84 (586)
|+++||||+|+||++++++|+++| ++|++.++.. ++. .....+. ..++.++.+|+.|.+++.++++.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 92 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRRE--------ERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLP 92 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCC
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999 5999955432 100 0000011 13688999999999999988865
Q ss_pred -----CCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHH----hCCCC-EEEEecCccccccCCCCCCCC
Q 007866 85 -----ASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACR----ECKVR-RLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 85 -----~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~----~~gvk-r~I~~SS~~vyg~~~~~~~~~ 146 (586)
+|+|||+||.... ..+++..+++|+.|+.++.+++. +.+.. ++|++||...+.
T Consensus 93 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~--------- 163 (272)
T 2nwq_A 93 EEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW--------- 163 (272)
T ss_dssp GGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS---------
T ss_pred HHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc---------
Confidence 5999999997521 23467789999999887776654 45667 999999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+..+...|+.+|...|.+.+.++.+ +|+++++++||.+.++........-.... . .... ...
T Consensus 164 ------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~---~--~~~~----~~~ 228 (272)
T 2nwq_A 164 ------PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQARY---D--KTYA----GAH 228 (272)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------CCC
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchHHH---H--Hhhc----cCC
Confidence 1234568999999999999887654 58999999999998764221110000000 0 0000 112
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
++..+|+|++++.++.. .....|+.+.+.++
T Consensus 229 ~~~pedvA~~v~~l~s~----~~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 229 PIQPEDIAETIFWIMNQ----PAHLNINSLEIMPV 259 (272)
T ss_dssp CBCHHHHHHHHHHHHTS----CTTEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHhCC----CccCccceEEEeec
Confidence 47899999999988761 23455666777654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=163.46 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=139.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~---l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++|+||||+|+||++++++|+++| ++|+++++.. ++. ..... ....++.++.+|+.|.+++.++
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 96 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSK--------ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQF 96 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 356899999999999999999999999 5999955432 210 00000 0113578899999999888877
Q ss_pred hc-------CCCEEEEc-ccCCC------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCC
Q 007866 82 LE-------GASTVFYV-DATDL------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 82 l~-------~~D~Vih~-aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++ ++|+|||+ |+... ...+++..+++|+.|+.++++++... +.+++|++||.+.+.
T Consensus 97 ~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------- 169 (286)
T 1xu9_A 97 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------- 169 (286)
T ss_dssp HHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS-------
T ss_pred HHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc-------
Confidence 65 69999999 56541 12345778999999999999887543 236999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+..+...|+.||...|.+.+.++. ..|+++++++||.+..+. ......+ .
T Consensus 170 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~--------~~~~~~~---------~ 224 (286)
T 1xu9_A 170 --------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET--------AMKAVSG---------I 224 (286)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------HHHHSCG---------G
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh--------HHHhccc---------c
Confidence 123457899999999998877653 358999999999986532 1111111 1
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
....+++.+|+|++++.+++
T Consensus 225 ~~~~~~~~~~vA~~i~~~~~ 244 (286)
T 1xu9_A 225 VHMQAAPKEECALEIIKGGA 244 (286)
T ss_dssp GGGGCBCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHh
Confidence 23457889999999999887
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=160.67 Aligned_cols=217 Identities=10% Similarity=0.021 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec-CCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHH----
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDIS---- 76 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d-~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~---- 76 (586)
+.+|+++||||+|.||++++++|+++| ++|++.+ +.. +.. .....+ ...++.++.+|+.|.+
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~--------~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~ 77 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSA--------AEANALSATLNARRPNSAITVQADLSNVATAPV 77 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCH--------HHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCH--------HHHHHHHHHHhhhcCCeeEEEEeecCCcccccc
Confidence 457899999999999999999999999 5898855 332 100 000000 1246889999999988
Q ss_pred -------------HHHHHhc-------CCCEEEEcccCCC-------C--------------CCChhHHHHHHHHHHHHH
Q 007866 77 -------------QIKKVLE-------GASTVFYVDATDL-------N--------------TDDFYNCYMIIVQGAKNV 115 (586)
Q Consensus 77 -------------~l~~~l~-------~~D~Vih~aa~~~-------~--------------~~~~~~~~~~Nv~gt~~l 115 (586)
++.++++ ++|++||+||... . ..+++..+++|+.++.++
T Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l 157 (291)
T 1e7w_A 78 SGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFL 157 (291)
T ss_dssp C----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHH
Confidence 8877765 6899999999752 1 234567899999999999
Q ss_pred HHHHH----hCC------CCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceE
Q 007866 116 VTACR----ECK------VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLT 182 (586)
Q Consensus 116 leaa~----~~g------vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~ 182 (586)
++++. +.+ ..++|++||...+. +..+...|+.||...+.+.+.++.+ +|+++
T Consensus 158 ~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 222 (291)
T 1e7w_A 158 IKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRV 222 (291)
T ss_dssp HHHHHHHHHTSCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEechhhcC---------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 98875 345 57999999997763 1234568999999999988876543 58999
Q ss_pred EEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc-cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 183 CALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 183 ~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+++||.+..+. . .-+.......... +.. -+...+|+|++++.++.. ......|+.+++.++..
T Consensus 223 n~v~PG~v~T~~-~-~~~~~~~~~~~~~---------p~~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 223 NGVGPGLSVLVD-D-MPPAVWEGHRSKV---------PLYQRDSSAAEVSDVVIFLCSS---KAKYITGTCVKVDGGYS 287 (291)
T ss_dssp EEEEESSBCCGG-G-SCHHHHHHHHTTC---------TTTTSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred EEEeeCCccCCc-c-CCHHHHHHHHhhC---------CCCCCCCCHHHHHHHHHHHhCC---cccCccCcEEEECCCcc
Confidence 999999987654 2 1122222222211 111 366799999999987751 12456789999988754
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=158.20 Aligned_cols=210 Identities=17% Similarity=0.122 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC-------CC--CCCCeEEEEccCCCH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD-------SL--SSGRAEYHQVDVRDI 75 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~-------~l--~~~~~~~~~~Dl~d~ 75 (586)
+.+++++||||+|.||++++++|+++| ++|++.++.. ++. .... .+ ...++.++.+|+.|.
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 77 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSA--------EPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDG 77 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCC--------SCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCh--------hhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCH
Confidence 457899999999999999999999999 5999955442 210 0000 00 124688999999999
Q ss_pred HHHHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccc
Q 007866 76 SQIKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVF 137 (586)
Q Consensus 76 ~~l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg 137 (586)
+++.++++ ++|++||+||... ...+++..+++|+.|+.++.+++... +..++|++||...+.
T Consensus 78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 157 (285)
T 3sc4_A 78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157 (285)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence 98887775 6899999999762 22345778889999999999988654 567999999987652
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
.. ..+...|+.||+..+.+.+.++.+ +|+++.+++||.+... + +.+......
T Consensus 158 ~~--------------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t------~-~~~~~~~~~---- 212 (285)
T 3sc4_A 158 PK--------------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT------A-AVQNLLGGD---- 212 (285)
T ss_dssp GG--------------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC------H-HHHHHHTSC----
T ss_pred CC--------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc------H-HHHhhcccc----
Confidence 10 133478999999999998877643 6899999999843321 1 122221111
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
.....+...+|+|++++.++.. .....|+.+.+.+
T Consensus 213 ----~~~~r~~~pedvA~~~~~l~s~----~~~~tG~~i~~dg 247 (285)
T 3sc4_A 213 ----EAMARSRKPEVYADAAYVVLNK----PSSYTGNTLLCED 247 (285)
T ss_dssp ----CCCTTCBCTHHHHHHHHHHHTS----CTTCCSCEEEHHH
T ss_pred ----ccccCCCCHHHHHHHHHHHhCC----cccccceEEEEcC
Confidence 1223467899999999988761 1145566655544
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=165.47 Aligned_cols=219 Identities=18% Similarity=0.113 Sum_probs=151.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||+|.||++++++|+++| ++|++.|+.... + . ..... ...++.++.+|+.|.+++.++++
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~---~---~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAER-L---R---ELEVA-HGGNAVGVVGDVRSLQDQKRAAERCL 74 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-H---H---HHHHH-TBTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHH-H---H---HHHHH-cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 599995543210 0 0 00001 13468899999999988877664
Q ss_pred ----CCCEEEEcccCCCCC------------CChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCC
Q 007866 84 ----GASTVFYVDATDLNT------------DDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ----~~D~Vih~aa~~~~~------------~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|++||+||..... .+++..+++|+.|+.++.+++... +-.++|++||...+.
T Consensus 75 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 147 (281)
T 3zv4_A 75 AAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------- 147 (281)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-------
T ss_pred HhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc-------
Confidence 579999999975211 125678899999999999987543 125999999987752
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHH----------HHHHHhcCCCce
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVP----------LLVNLAKPGWTK 212 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~----------~l~~~~~~g~~~ 212 (586)
+..+...|+.||+..+.+.+.++.+ .++++.++.||.+..+....... ...+....
T Consensus 148 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---- 215 (281)
T 3zv4_A 148 --------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS---- 215 (281)
T ss_dssp --------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH----
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHh----
Confidence 1234567999999999998877543 23999999999998764221100 01111111
Q ss_pred EEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 213 FIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 213 ~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+...+...+|+|++++.++... ......|+++++.+|..
T Consensus 216 -----~~p~~r~~~pedvA~~v~fL~s~~--~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 216 -----VLPIGRMPALEEYTGAYVFFATRG--DSLPATGALLNYDGGMG 256 (281)
T ss_dssp -----TCTTSSCCCGGGGSHHHHHHHSTT--TSTTCSSCEEEESSSGG
T ss_pred -----cCCCCCCCCHHHHHHHHHHhhccc--ccccccCcEEEECCCCc
Confidence 122345678999999998776410 12337899999988753
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-18 Score=166.43 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=144.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCCC--CCCeEEEEccCCCHHHHHH----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLS--SGRAEYHQVDVRDISQIKK---- 80 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l~--~~~~~~~~~Dl~d~~~l~~---- 80 (586)
||+++||||+|+||++++++|+++| ++|+++| |++++.. ... +. ..++..+ |..+.+.+.+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~--------r~~~~~~~~~~-l~~~~~~~~~~--d~~~v~~~~~~~~~ 68 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG-HTVACHD--------ESFKQKDELEA-FAETYPQLKPM--SEQEPAELIEAVTS 68 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECC--------GGGGSHHHHHH-HHHHCTTSEEC--CCCSHHHHHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC-CEEEEEe--------CCHHHHHHHHH-HHhcCCcEEEE--CHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999944 4332100 000 00 1223333 6655443322
Q ss_pred HhcCCCEEEEcccCC-C-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 81 VLEGASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
.+.++|+|||+||.. . ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 69 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 137 (254)
T 1zmt_A 69 AYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------- 137 (254)
T ss_dssp HHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-----------
T ss_pred HhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc-----------
Confidence 234799999999975 2 123467889999999999988774 44667999999987762
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHH------HHHHhcCCCceEEEcC
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPL------LVNLAKPGWTKFIIGS 217 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~------l~~~~~~g~~~~i~g~ 217 (586)
+..+...|+.||...+.+.+.++.+ +|+++++++||.++|+..... .+. .......
T Consensus 138 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~--------- 204 (254)
T 1zmt_A 138 ----PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKK--------- 204 (254)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHH---------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhc---------
Confidence 1234568999999999998877543 589999999999988864422 111 1111110
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
......+.+.+|+|++++.++.. ......|+.+++.++..
T Consensus 205 ~~p~~~~~~p~dvA~~v~~l~s~---~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 205 VTALQRLGTQKELGELVAFLASG---SCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp HSSSSSCBCHHHHHHHHHHHHTT---SCGGGTTCEEEESTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCc---ccCCccCCEEEECCCch
Confidence 01122367899999999987751 12346789999988753
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=162.06 Aligned_cols=198 Identities=11% Similarity=0.079 Sum_probs=139.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+++++||||+|.||++++++|+++| ++|.++++.... +... ...+.... ...++.++.+|+.|.+++.++++
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQN-LEKV--HDEIMRSNKHVQEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHH-HHHH--HHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHHhccccCcceEEeccCCCHHHHHHHHHH
Confidence 457899999999999999999999999 599995543210 0000 00000000 11468899999999998887765
Q ss_pred ------CCCEEEEcccCCCC------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|+|||+||.... ..+++..+++|+.|+.++.+++ ++.+..++|++||...+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------- 150 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY---------- 150 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC----------
Confidence 58999999998521 2345788999999999999887 345667999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+..+...|+.||...+.+.+.++.+ .|+++.+++||.+..+ +.+.... ......+
T Consensus 151 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~--------~~~~~~~---------~~~~~~~ 208 (250)
T 3nyw_A 151 -----GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD--------MAKKAGT---------PFKDEEM 208 (250)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH--------HHHHTTC---------CSCGGGS
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc--------hhhhcCC---------CcccccC
Confidence 1234678999999999888876543 5899999999998653 2222211 1223457
Q ss_pred cchhHHHHHHHHHHH
Q 007866 225 TYVENVAHAHVCAAE 239 (586)
Q Consensus 225 i~v~Dva~ai~~ale 239 (586)
++.+|+|++++.++.
T Consensus 209 ~~p~dva~~v~~l~s 223 (250)
T 3nyw_A 209 IQPDDLLNTIRCLLN 223 (250)
T ss_dssp BCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc
Confidence 899999999998876
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=160.50 Aligned_cols=210 Identities=12% Similarity=0.059 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC--CCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl--~d~~~l~~~l~ 83 (586)
+.+++++||||+|+||++++++|+++| ++|.++++.... +... ...+. .....+..++.+|+ .|.+++.++++
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~--~~~~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEAS-LAEV--SDQIK-SAGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHH-HTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHH-HHHH--HHHHH-hcCCCCceEEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999 489995544210 0000 00000 01124567777777 88888776654
Q ss_pred -------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++|+|||+||... ...+++..+++|+.|+.++++++ ++.+..++|++||...+.
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------- 159 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK------- 159 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-------
Confidence 6899999999741 23456788999999999999988 445667999999987652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+..+...|+.+|+..|.+.+.++.+ .|+++.+++||.+-.+ +....... ..
T Consensus 160 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~--------~~~~~~~~---------~~ 214 (247)
T 3i1j_A 160 --------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG--------MRAQAYPD---------EN 214 (247)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH--------HHHHHSTT---------SC
T ss_pred --------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc--------cchhcccc---------cC
Confidence 1234568999999999998876532 6899999999988643 12221111 12
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
...+...+|+|++++.++.. ......|+.+++
T Consensus 215 ~~~~~~p~dva~~~~~l~s~---~~~~itG~~i~~ 246 (247)
T 3i1j_A 215 PLNNPAPEDIMPVYLYLMGP---DSTGINGQALNA 246 (247)
T ss_dssp GGGSCCGGGGTHHHHHHHSG---GGTTCCSCEEEC
T ss_pred ccCCCCHHHHHHHHHHHhCc---hhccccCeeecC
Confidence 23467799999999887751 123466776664
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-16 Score=159.27 Aligned_cols=209 Identities=18% Similarity=0.117 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCC-------C--CCCCCeEEEEccCCCH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPD-------S--LSSGRAEYHQVDVRDI 75 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~-------~--l~~~~~~~~~~Dl~d~ 75 (586)
..+++++||||+|.||++++++|+++| ++|+++++.. ++. .... . -...++.++.+|++|.
T Consensus 43 l~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~--------~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~ 113 (346)
T 3kvo_A 43 LAGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTA--------QPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDE 113 (346)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCC--------SCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECCh--------hhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 356899999999999999999999999 5999955432 210 0000 0 0124678899999999
Q ss_pred HHHHHHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccc
Q 007866 76 SQIKKVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVF 137 (586)
Q Consensus 76 ~~l~~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg 137 (586)
+++.++++ ++|+|||+||... ...+++..+++|+.|+.++.+++. +.+..++|++||...+.
T Consensus 114 ~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~ 193 (346)
T 3kvo_A 114 QQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLN 193 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcC
Confidence 98887775 7899999999752 233467889999999999999884 44667999999987653
Q ss_pred cCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEE
Q 007866 138 DGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFII 215 (586)
Q Consensus 138 ~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~ 215 (586)
.. ...+...|+.||+..+.+.+.++.+ .|+++.++.|+.+... .+.+.....
T Consensus 194 ~~-------------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T-------~~~~~~~~~------ 247 (346)
T 3kvo_A 194 PV-------------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT-------AAMDMLGGP------ 247 (346)
T ss_dssp GG-------------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC-------HHHHHHCC-------
T ss_pred CC-------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc-------HHHHhhccc------
Confidence 11 1245678999999999888877543 5899999999964322 122222211
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
.....+...+|+|++++.++.. .....|+.+ +.+
T Consensus 248 ---~~~~r~~~pedvA~~v~~L~s~----~~~itG~~i-vdg 281 (346)
T 3kvo_A 248 ---GIESQCRKVDIIADAAYSIFQK----PKSFTGNFV-IDE 281 (346)
T ss_dssp ----CGGGCBCTHHHHHHHHHHHTS----CTTCCSCEE-EHH
T ss_pred ---cccccCCCHHHHHHHHHHHHhc----CCCCCceEE-ECC
Confidence 1234567899999999988861 234567655 544
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-16 Score=153.83 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=144.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCC---C--CCCCeEEEEccCCCHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDS---L--SSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~---l--~~~~~~~~~~Dl~d~~~l~ 79 (586)
+.+|+++||||+|.||++++++|.++| ++|++.++... +... ...+... + ...++.++.+|+.|.+++.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 78 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAV----ANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVR 78 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCS----CCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccch----hhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 457999999999999999999999999 59999555431 0000 0000000 0 1346788999999999888
Q ss_pred HHhc-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCC
Q 007866 80 KVLE-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 80 ~~l~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~ 141 (586)
++++ ++|++||+||... ...+++..+++|+.|+.++.+++.. .+..++|++||...+...
T Consensus 79 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 156 (274)
T 3e03_A 79 AAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA-- 156 (274)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH--
T ss_pred HHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC--
Confidence 7765 6899999999752 2334678889999999999998754 456799999998765210
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
...+...|+.||...+.+.+.++.+ +|+++.++.||.+.... .. +.. . +
T Consensus 157 -----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~---~~----~~~-~---------~ 208 (274)
T 3e03_A 157 -----------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD---AI----NML-P---------G 208 (274)
T ss_dssp -----------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------------C
T ss_pred -----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc---hh----hhc-c---------c
Confidence 0134568999999999988776543 58999999999543221 11 100 0 1
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEE
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAF 253 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ 253 (586)
.....+...+|+|++++.++.. ......|+.+
T Consensus 209 ~~~~~~~~pedvA~~v~~l~s~---~~~~itG~~i 240 (274)
T 3e03_A 209 VDAAACRRPEIMADAAHAVLTR---EAAGFHGQFL 240 (274)
T ss_dssp CCGGGSBCTHHHHHHHHHHHTS---CCTTCCSCEE
T ss_pred ccccccCCHHHHHHHHHHHhCc---cccccCCeEE
Confidence 1223467899999999987751 1234567666
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=146.00 Aligned_cols=214 Identities=12% Similarity=0.082 Sum_probs=152.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||+.+++.|.++| .+|.+.|+.. +. . +.....++..+.+|+.|+++++++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~--------~~--~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g 77 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDA--------DG--V-HAPRHPRIRREELDITDSQRLQRLFEALP 77 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------TS--T-TSCCCTTEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCH--------HH--H-hhhhcCCeEEEEecCCCHHHHHHHHHhcC
Confidence 58999999999999999999999999 5999966543 21 1 11234578999999999999988775
Q ss_pred CCCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCCCCcccCCC
Q 007866 84 GASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWK 155 (586)
Q Consensus 84 ~~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~ 155 (586)
+.|++||+||... +..+++..+++|+.|+..+.+++... +-.++|++||..... +..
T Consensus 78 ~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------~~~ 142 (242)
T 4b79_A 78 RLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF---------------GSA 142 (242)
T ss_dssp CCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS---------------CCS
T ss_pred CCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC---------------CCC
Confidence 5899999999762 24457889999999998888766432 125899999987641 123
Q ss_pred CCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCCccccccchhHH
Q 007866 156 FQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 156 p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (586)
....|+.||.....+.+.++.+ +|+++.++-||.+-.|..... -+...+...+..|. .-+-..+|+
T Consensus 143 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~Pl---------gR~g~peei 213 (242)
T 4b79_A 143 DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPL---------ARWGEAPEV 213 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTT---------CSCBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCC---------CCCcCHHHH
Confidence 3568999999988887766432 689999999999976643211 12223333222221 224568999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 231 AHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 231 a~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
|.+++.++- ....-..|+++.+.+|.
T Consensus 214 A~~v~fLaS---d~a~~iTG~~l~VDGG~ 239 (242)
T 4b79_A 214 ASAAAFLCG---PGASFVTGAVLAVDGGY 239 (242)
T ss_dssp HHHHHHHTS---GGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhC---chhcCccCceEEECccH
Confidence 999986653 11345789999998763
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=167.54 Aligned_cols=196 Identities=21% Similarity=0.153 Sum_probs=143.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.++++|||||+|+||.+++++|.++|+.+|++++ |+.... .+...+ ...++.++.+|+.|.+++.+
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~--------R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~ 296 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVS--------RSGPDADGAGELVAELEALGARTTVAACDVTDRESVRE 296 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEE--------SSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc--------CCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence 4689999999999999999999999964588844 432210 000001 12468899999999999999
Q ss_pred HhcCC------CEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 81 VLEGA------STVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 81 ~l~~~------D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+++++ |+|||+||... ...+.+..+++|+.|+.++.+++...+.++||++||.+.+..
T Consensus 297 ~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g--------- 367 (486)
T 2fr1_A 297 LLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG--------- 367 (486)
T ss_dssp HHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC---------
T ss_pred HHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC---------
Confidence 98765 99999999762 223456788899999999999999989999999999866521
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
......|+.+|...+.+.+.+.. .|+++++++||.+.+++... ..... .. ......+++.
T Consensus 368 ------~~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~--~~~~~---------~~--~~~g~~~i~~ 427 (486)
T 2fr1_A 368 ------APGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVAD---------RF--RRHGVIEMPP 427 (486)
T ss_dssp ------CTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------------C--TTTTEECBCH
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccc--hhHHH---------HH--HhcCCCCCCH
Confidence 12346899999999998887655 69999999999998764210 00000 00 1122467899
Q ss_pred hHHHHHHHHHHH
Q 007866 228 ENVAHAHVCAAE 239 (586)
Q Consensus 228 ~Dva~ai~~ale 239 (586)
+|+++++..+++
T Consensus 428 e~~a~~l~~~l~ 439 (486)
T 2fr1_A 428 ETACRALQNALD 439 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=153.39 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=137.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+++++||||+|+||++++++|+++| ++|++.|+.. +.. .....+ ....+.++.+|+.|.+++.+++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 102 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRP--------DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALF 102 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHH
Confidence 56899999999999999999999999 5999955432 100 000000 1123588999999999888776
Q ss_pred c-------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CC--CCEEEEecCccccccCCC
Q 007866 83 E-------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CK--VRRLVYNSTADVVFDGSH 141 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~g--vkr~I~~SS~~vyg~~~~ 141 (586)
+ ++|+|||+||... ...+++..+++|+.|+.++.+++.. .+ -.++|++||...+.
T Consensus 103 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---- 178 (281)
T 4dry_A 103 AAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT---- 178 (281)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC----
Confidence 5 5799999999752 2345677999999998888776643 33 46999999987652
Q ss_pred CCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCC
Q 007866 142 DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 142 ~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g 218 (586)
+..+...|+.||+..+.+.+.++.+ +|+++.+++||.+..+....... ...... ..
T Consensus 179 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~~~~~~------~~ 237 (281)
T 4dry_A 179 -----------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMST----GVLQAN------GE 237 (281)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------C----EEECTT------SC
T ss_pred -----------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcc----hhhhhh------hc
Confidence 2245678999999999998877643 68999999999997653221100 000000 01
Q ss_pred CccccccchhHHHHHHHHHHH
Q 007866 219 ENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale 239 (586)
.....++..+|+|++++.++.
T Consensus 238 ~~~~~~~~pedvA~~v~fL~s 258 (281)
T 4dry_A 238 VAAEPTIPIEHIAEAVVYMAS 258 (281)
T ss_dssp EEECCCBCHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhC
Confidence 112347789999999998887
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=158.33 Aligned_cols=218 Identities=11% Similarity=-0.004 Sum_probs=150.1
Q ss_pred CCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++|||| +|.||++++++|+++| ++|++.++.....+ ......+ ..++.++.+|+.|.+++.++++
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~~~------~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 76 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLI------QRITDRL-PAKAPLLELDVQNEEHLASLAG 76 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHHHH------HHHHTTS-SSCCCEEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHHHH------HHHHHhc-CCCceEEEccCCCHHHHHHHHH
Confidence 45789999999 9999999999999999 58998555321000 0011111 2357889999999998887775
Q ss_pred ----------CCCEEEEcccCCC------------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccC
Q 007866 84 ----------GASTVFYVDATDL------------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDG 139 (586)
Q Consensus 84 ----------~~D~Vih~aa~~~------------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~ 139 (586)
++|+|||+||... ...+++..+++|+.++.++.+++...- -.++|++||...++
T Consensus 77 ~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~-- 154 (269)
T 2h7i_A 77 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA-- 154 (269)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC--
T ss_pred HHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc--
Confidence 7899999999653 123456788999999999999987541 14899999876431
Q ss_pred CCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc-----HHH-------HHH
Q 007866 140 SHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL-----VPL-------LVN 204 (586)
Q Consensus 140 ~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~-----~~~-------l~~ 204 (586)
..+...|+.||...+.+.+.++.+ +|+++.+++||.+..+..... -.. +.+
T Consensus 155 --------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
T 2h7i_A 155 --------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEE 220 (269)
T ss_dssp --------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred --------------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHH
Confidence 134568999999999988876543 589999999998865411000 000 001
Q ss_pred HhcCCCceEEEcCCCccc-cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 205 LAKPGWTKFIIGSGENMS-DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 205 ~~~~g~~~~i~g~g~~~~-~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..... .+.. .+...+|+|++++.++. .......|+.+++.++.
T Consensus 221 ~~~~~---------~p~~rr~~~p~dvA~~v~~L~s---~~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 221 GWDQR---------APIGWNMKDATPVAKTVCALLS---DWLPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHH---------CTTCCCTTCCHHHHHHHHHHHS---SSCTTCCSEEEEESTTG
T ss_pred hhhcc---------CCcccCCCCHHHHHHHHHHHhC---chhccCcceEEEecCCe
Confidence 11010 1111 36678999999987764 11235678899998864
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-15 Score=144.64 Aligned_cols=208 Identities=14% Similarity=0.130 Sum_probs=150.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+|+|+||||++-||+.++++|.++| ++|.+.|+.... .. ...+ ...++..+.+|+.|++++.++++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~----~~---~~~~--~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDIDEKR----SA---DFAK--ERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH----HH---HHHT--TCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHH----HH---HHHH--hcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999 599996664321 00 0011 13468899999999988877664
Q ss_pred ---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 ---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+||... ...+++..+++|+.|+.++.+++.. .+ .++|++||...+.
T Consensus 72 ~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~------------ 138 (247)
T 3ged_A 72 KLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQ------------ 138 (247)
T ss_dssp HHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTS------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeeccccc------------
Confidence 5899999999761 2446889999999999888876643 34 6999999987652
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+......|+.||...+.+.+.++.+ .|+++.++-||.+-.+............. | ..-+...
T Consensus 139 ---~~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~~~~----P---------l~R~g~p 202 (247)
T 3ged_A 139 ---SEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDCAAI----P---------AGKVGTP 202 (247)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHHHTS----T---------TSSCBCH
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHHhcC----C---------CCCCcCH
Confidence 1123468999999988877665432 37999999999986654433333332221 1 1124568
Q ss_pred hHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+|+|.+++.++. ..-..|+++.+.+|-
T Consensus 203 ediA~~v~fL~s-----~~~iTG~~i~VDGG~ 229 (247)
T 3ged_A 203 KDISNMVLFLCQ-----QDFITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHH-----CSSCCSCEEEESTTG
T ss_pred HHHHHHHHHHHh-----CCCCCCCeEEECcCH
Confidence 999999998776 357889999998874
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=155.35 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~---~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||+|.||++++++|++ +| ++|++.++.... +... ...+.......++.++.+|+.|.+++.+++
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~-~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESM-LRQL--KEELGAQQPDLKVVLAAADLGTEAGVQRLL 79 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHH-HHHH--HHHHHHHCTTSEEEEEECCTTSHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHH-HHHH--HHHHHhhCCCCeEEEEecCCCCHHHHHHHH
Confidence 4568999999999999999999999 89 599995543210 0000 000000001235788999999998887765
Q ss_pred c---------CCC--EEEEcccCCC----------CCCChhHHHHHHHHHHHHHHHHHHhC------CCCEEEEecCccc
Q 007866 83 E---------GAS--TVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNSTADV 135 (586)
Q Consensus 83 ~---------~~D--~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~lleaa~~~------gvkr~I~~SS~~v 135 (586)
+ +.| +|||+||... ...+++..+++|+.|+.++.+++... +..++|++||...
T Consensus 80 ~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~ 159 (259)
T 1oaa_A 80 SAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159 (259)
T ss_dssp HHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGG
T ss_pred HHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchh
Confidence 3 358 9999999742 12346778999999999999998754 2357999999987
Q ss_pred cccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEE
Q 007866 136 VFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFI 214 (586)
Q Consensus 136 yg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~-gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i 214 (586)
+. +..+...|+.||...+.+.+.++.+. ++++.++.||.+-.+. ...+............
T Consensus 160 ~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~----~~~~~~~~~~~~~~~~ 220 (259)
T 1oaa_A 160 LQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM----QQLARETSKDPELRSK 220 (259)
T ss_dssp TS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH----HHHHHHHCSCHHHHHH
T ss_pred cC---------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch----HHHHhhccCChhHHHH
Confidence 62 12345689999999999998876543 4899999999875431 1111110000000000
Q ss_pred EcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 215 IGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 215 ~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
..+..+...+.+.+|+|++++.++.. .....|+.+++
T Consensus 221 ~~~~~p~~~~~~p~dvA~~v~~l~~~----~~~itG~~i~v 257 (259)
T 1oaa_A 221 LQKLKSDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp HHHHHHTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred HHHhhhcCCcCCHHHHHHHHHHHHhh----ccccCCcEEec
Confidence 00001123467899999999988762 23456666654
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=166.72 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=150.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+++++||||+|.||.+++++|.++|. +|+++++.. ............++.++.+|+.|.+++.++++
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~--------~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDG--------AAEDLKRVADKVGGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGG--------GHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCc--------cHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 568999999999999999999999995 888855432 11011111111246789999999988877764
Q ss_pred ----C-CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ----G-ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC----KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ----~-~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~----gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+ +|+|||+||... ...+++..+++|+.|+.++.+++... +..+||++||.+.+..
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g--------- 353 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG--------- 353 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHC---------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCC---------
Confidence 4 899999999862 23456788999999999999999876 5679999999887631
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
......|+.+|...+.+.+.++. ..|+++.++.||.+..+............... ......+
T Consensus 354 ------~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---------~~~l~r~ 418 (454)
T 3u0b_A 354 ------NRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRR---------LNSLFQG 418 (454)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHH---------SBTTSSC
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHh---------hccccCC
Confidence 23457899999977666665542 26899999999999876432211100000000 0112334
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+|+|+++..++.. ......|+++++.++.
T Consensus 419 g~pedvA~~v~fL~s~---~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASP---ASNAVTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCG---GGTTCCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCC---ccCCCCCcEEEECCcc
Confidence 6789999999877641 1345789999998864
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=164.40 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=153.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.+++||||||+|+||.+++++|.++|+.+|++++ |+.... .+...+ ...++.++.+|+.|.+++.+
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~--------R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~ 329 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTS--------RRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAA 329 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEE--------SSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEe--------cCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence 4689999999999999999999999954688743 332110 000011 12458889999999999999
Q ss_pred HhcC--CCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 81 VLEG--ASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 81 ~l~~--~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
++++ +|+|||+||.... ..+.+..+++|+.|+.++.+++... +.++||++||.+.+..
T Consensus 330 ~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g------------ 397 (511)
T 2z5l_A 330 LVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWG------------ 397 (511)
T ss_dssp HHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTC------------
T ss_pred HHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCC------------
Confidence 9975 9999999997622 2345678899999999999999877 7889999999865321
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHH
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dv 230 (586)
......|+.+|...|.+.+.+.. .|+++++++||.+-+.+...... ..... ......++.+|+
T Consensus 398 ---~~g~~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~~~--~~~~~-----------~~g~~~l~~e~~ 460 (511)
T 2z5l_A 398 ---NAGQGAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAGAG--EESLS-----------RRGLRAMDPDAA 460 (511)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCCHH--HHHHH-----------HHTBCCBCHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccccc--HHHHH-----------hcCCCCCCHHHH
Confidence 12356899999999999988765 69999999999884322211111 11111 011356889999
Q ss_pred HHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHH
Q 007866 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILE 272 (586)
Q Consensus 231 a~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~ 272 (586)
++++..+++. +. . .+.+. .+.|..+...+..
T Consensus 461 a~~l~~al~~-----~~--~-~v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 461 VDALLGAMGR-----ND--V-CVTVV---DVDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHHH-----TC--S-EEEEC---CBCHHHHHHHHHH
T ss_pred HHHHHHHHhC-----CC--C-EEEEE---eCCHHHHHhhhcc
Confidence 9999999872 22 1 23333 2557666665543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=154.91 Aligned_cols=203 Identities=19% Similarity=0.073 Sum_probs=136.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH-HHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-~~l~~~l~-- 83 (586)
.+++|+||||+|+||++++++|+++| ++|++.++.... .. .....+.. ....++.++.+|+.|. +++.++++
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~-~~--~~~~~l~~-~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTK-GH--EAVEKLKN-SNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH--HHHHHHHT-TTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHH-HH--HHHHHHHh-cCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 46799999999999999999999999 599995543210 00 00000000 1224689999999997 77665554
Q ss_pred -----CCCEEEEcccCCCC-------------------------------------CCChhHHHHHHHHHHHHHHHHHH-
Q 007866 84 -----GASTVFYVDATDLN-------------------------------------TDDFYNCYMIIVQGAKNVVTACR- 120 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------------------------------------~~~~~~~~~~Nv~gt~~lleaa~- 120 (586)
++|+|||+||.... ..+++..+++|+.|+.++++++.
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 69999999997521 22345679999999998888774
Q ss_pred ---hCCCCEEEEecCccccccCCCC-----------C------------------CCCCCCcccCCCCCChHHHHHHHHH
Q 007866 121 ---ECKVRRLVYNSTADVVFDGSHD-----------I------------------HNGDETLTCCWKFQDLMCDLKAQAE 168 (586)
Q Consensus 121 ---~~gvkr~I~~SS~~vyg~~~~~-----------~------------------~~~~E~~p~~~~p~~~Y~~sK~~~E 168 (586)
+.+..|+|++||...+...... . ....+... ...+...|+.||+..+
T Consensus 166 ~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 166 LLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNG-WPSFGAAYTTSKACLN 244 (311)
T ss_dssp HHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTT-CCSSCHHHHHHHHHHH
T ss_pred hhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccccc-CcccchhhHHHHHHHH
Confidence 3456799999998775321100 0 00000000 1134568999999999
Q ss_pred HHHHhhcCCC-CceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 169 ALVLFANNID-GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 169 ~~l~~~~~~~-gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.+.+.++.+. ++++.++.||.+..+.... ......++.|+.++.++.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~~------------------------~~~~~~~~~a~~~~~~~~ 292 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNYG------------------------IGNYTAEEGAEHVVRIAL 292 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGTT------------------------CCSBCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcCC------------------------CCCCCHHHHHHHHHHHHh
Confidence 9999887653 5999999999997542110 012458889998887765
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-16 Score=158.03 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=144.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l- 82 (586)
+.+|+++||||+|+||++++++|+++| ++|++.|+..... ..|+.++. .....+.... ....+|+.|.+++.+++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHHHHHHHHHhhC-CeEEEeCCCHHHHHHHHH
Confidence 457899999999999999999999999 5999976542100 12222100 0000010011 12358999877655543
Q ss_pred ------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 83 ------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
.++|+|||+||... ...+++..+++|+.|+.++.+++ ++.+..|+|++||.+.+..
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~------- 157 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG------- 157 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC-------
Confidence 36899999999762 12356788999999999888877 4456789999999755321
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
..+...|+.||...+.+.+.++.+ +|+++.+++||.+ .+...... +....
T Consensus 158 --------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~------------------~~~~~ 210 (319)
T 1gz6_A 158 --------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM------------------PEDLV 210 (319)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS------------------CHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC------------------Chhhh
Confidence 124568999999999988877543 5899999999976 32111000 01123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+++.+|+|.+++.++.. .....|+.|++.++.
T Consensus 211 ~~~~p~dvA~~~~~l~s~----~~~~tG~~~~v~GG~ 243 (319)
T 1gz6_A 211 EALKPEYVAPLVLWLCHE----SCEENGGLFEVGAGW 243 (319)
T ss_dssp HHSCGGGTHHHHHHHTST----TCCCCSCEEEEETTE
T ss_pred ccCCHHHHHHHHHHHhCc----hhhcCCCEEEECCCe
Confidence 457899999999877641 224578899998864
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-16 Score=158.58 Aligned_cols=164 Identities=16% Similarity=0.121 Sum_probs=124.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--------CCCCCeEEEEccCCCHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--------LSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--------l~~~~~~~~~~Dl~d~~~l~ 79 (586)
+++|+||||+|+||++++++|+++|+ +|+++++.. +... ..... ....++.++.+|+.|.+++.
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 73 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATL-----RDLK--TQGRLWEAARALACPPGSLETLQLDVRDSKSVA 73 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEE-----SCGG--GTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeec-----CcHH--HHHHHHHHhhhccCCCCceEEEEecCCCHHHHH
Confidence 57899999999999999999999995 766643321 1100 00000 01246889999999999999
Q ss_pred HHhcC-----CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCC
Q 007866 80 KVLEG-----ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 80 ~~l~~-----~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++++. +|+|||+||... ...+++..+++|+.|+.++++++ ++.+.+++|++||...+..
T Consensus 74 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~----- 148 (327)
T 1jtv_A 74 AARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG----- 148 (327)
T ss_dssp HHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC-----
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccC-----
Confidence 98874 899999999752 22346788999999999999986 4457789999999877521
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG 194 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~ 194 (586)
......|+.||...|.+.+.++. .+|+++++++||.+..+.
T Consensus 149 ----------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 149 ----------LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----------CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 12356899999999999887765 368999999999998764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=148.66 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=135.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+++++||||+|+||++++++|+++| ++|++.++.. ++. .....+ ...++.++.+|+.|.+++.+++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHL--------DTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLF 73 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCH--------HHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHH
Confidence 457899999999999999999999999 5999855432 100 000000 0235788999999998877665
Q ss_pred c--------CCCEEEEcccC---------C-----CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCcccc
Q 007866 83 E--------GASTVFYVDAT---------D-----LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVV 136 (586)
Q Consensus 83 ~--------~~D~Vih~aa~---------~-----~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vy 136 (586)
+ ++|+|||+||. . ....+++..+++|+.++.++.+++. +.+..++|++||...+
T Consensus 74 ~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 153 (260)
T 2qq5_A 74 EQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL 153 (260)
T ss_dssp HHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGT
T ss_pred HHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhc
Confidence 3 47999999941 1 1234467888899999877766654 4567899999998775
Q ss_pred ccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE
Q 007866 137 FDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF 213 (586)
Q Consensus 137 g~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~ 213 (586)
. ..+...|+.||...|.+.+.++. .+|+++++++||.+..+........- .........
T Consensus 154 ~----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~~~~~~~~ 215 (260)
T 2qq5_A 154 Q----------------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKE--EVLQDPVLK 215 (260)
T ss_dssp S----------------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred C----------------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccc--cccchhHHH
Confidence 2 12346899999999999887753 36899999999999876432211100 000000000
Q ss_pred EEcCCCccccccchhHHHHHHHHHHH
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
.. ......+...+|+|++++.++.
T Consensus 216 ~~--~~~~~~~~~pe~va~~v~~l~s 239 (260)
T 2qq5_A 216 QF--KSAFSSAETTELSGKCVVALAT 239 (260)
T ss_dssp --------CHHHHHHHHHHHHHHHHT
T ss_pred HH--HhhhccCCCHHHHHHHHHHHhc
Confidence 00 0011123578999999987775
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-15 Score=148.19 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=139.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccC--CCCCCC-CCCCCCCCCCeEEEEccCCCHHHH-HHHh-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLD--PSESNS-LLPDSLSSGRAEYHQVDVRDISQI-KKVL- 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~--r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l-~~~l- 82 (586)
+|+++||||+|+||++++++|+++| ++|++.| . |++++. .....+ .+.+.. |..+.+.+ +++.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~-------~~~r~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHD-------ASFADAAERQRFESEN--PGTIAL--AEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECC-------GGGGSHHHHHHHHHHS--TTEEEC--CCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEec-------CCcCCHHHHHHHHHHh--CCCccc--CHHHHHHHHHHHHH
Confidence 4789999999999999999999999 5999941 2 332210 000111 122222 44443332 2222
Q ss_pred --cCCCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 83 --EGASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 --~~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
.++|+|||+||.... ..+++..+++|+.++.++.+++. +.+..++|++||...+..
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------- 140 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKP-------- 140 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC--------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCC--------
Confidence 368999999996522 23467789999999999988775 456789999999887631
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCC---CCcH-HHHHHHhcCCCceEEEcCCC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGD---TQLV-PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~---~~~~-~~l~~~~~~g~~~~i~g~g~ 219 (586)
..+...|+.||...+.+.+.++.+ +|+++++++||.+-.+.. .... +......... ..
T Consensus 141 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------~~ 205 (244)
T 1zmo_A 141 -------LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDR--------DV 205 (244)
T ss_dssp -------CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHH--------HC
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhc--------CC
Confidence 234568999999999998876543 589999999999876642 1110 0111111100 01
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
....+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 206 p~~r~~~pe~vA~~v~~l~s~---~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 206 PLGRLGRPDEMGALITFLASR---RAAPIVGQFFAFTGGY 242 (244)
T ss_dssp TTCSCBCHHHHHHHHHHHHTT---TTGGGTTCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHcCc---cccCccCCEEEeCCCC
Confidence 112367899999999987751 1234678899988763
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=139.94 Aligned_cols=213 Identities=16% Similarity=0.129 Sum_probs=147.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||++-||+.++++|.++| ++|.+.++. .... ..+...+.+|+.|++++.++++
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~--------~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~ 71 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELG-AQVLTTARA--------RPEG-------LPEELFVEADLTTKEGCAIVAEA 71 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEESS--------CCTT-------SCTTTEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEECC--------chhC-------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 3567999999999999999999999999 599885543 2211 1123468899999988876654
Q ss_pred ------CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 84 ------GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 ------~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+.|++||+||... ...+++..+++|+.++.++.+++. +.+-.++|++||......
T Consensus 72 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------ 145 (261)
T 4h15_A 72 TRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------ 145 (261)
T ss_dssp HHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------
T ss_pred HHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC------
Confidence 4899999998641 233567889999999988877654 445679999999876411
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH--------------HHHHHhc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP--------------LLVNLAK 207 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~--------------~l~~~~~ 207 (586)
.......|+.||...+.+.+.++.+ +|+++.++-||.+-.+....... .+.....
T Consensus 146 --------~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (261)
T 4h15_A 146 --------LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGL 217 (261)
T ss_dssp --------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHh
Confidence 0123467999999988887766532 68999999999886442111111 1111111
Q ss_pred CCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
... +..-+...+|+|.+++.++- ....-..|+++.+.+|-
T Consensus 218 ~~~---------PlgR~g~peevA~~v~fLaS---~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 218 GGI---------PLGRPAKPEEVANLIAFLAS---DRAASITGAEYTIDGGT 257 (261)
T ss_dssp TCC---------TTSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTC
T ss_pred cCC---------CCCCCcCHHHHHHHHHHHhC---chhcCccCcEEEECCcC
Confidence 111 12235669999999987653 11345789999998874
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=146.31 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=143.5
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhcCCcEEEEecCCcccc---cCCCCCC-CCCCCCCCCCC----eEEEEcc----
Q 007866 6 AIPRTCVVLNGR--GFVGRSLVLRLLELGKCIVRVTDSTQSLQ---LDPSESN-SLLPDSLSSGR----AEYHQVD---- 71 (586)
Q Consensus 6 ~~~~~IlVTGat--G~IG~~lv~~L~~~g~~~V~~~d~~~~~~---l~r~~~~-~~~~~~l~~~~----~~~~~~D---- 71 (586)
+.+|+++||||+ |+||++++++|+++| ++|++.|+....+ ..|...+ ... ..+.... ...+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccccccceecc
Confidence 456899999999 999999999999999 5888865321000 0000000 000 0111111 2333333
Q ss_pred ----CC----C--------HHHHHHHh-------cCCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHHH
Q 007866 72 ----VR----D--------ISQIKKVL-------EGASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTAC 119 (586)
Q Consensus 72 ----l~----d--------~~~l~~~l-------~~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~lleaa 119 (586)
+. | .+++.+++ .++|++||+||.. ....+++..+++|+.|+.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 22 1 22333332 3689999999853 123346789999999999999999
Q ss_pred HhC--CCCEEEEecCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCccc
Q 007866 120 REC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (586)
Q Consensus 120 ~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~-~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G 192 (586)
... .-.++|++||...+.. .... ..|+.||...+.+.+.++.+ +|+++.+++||.+.+
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T 228 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHhccCceEEEEeccccccC---------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence 764 1158999999876521 1122 47999999999998877653 589999999999998
Q ss_pred CCCCCc--HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 193 PGDTQL--VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 193 ~~~~~~--~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..... .+.+........+ ...+...+|+|++++.++.. ......|+.+++.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~l~s~---~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 229 RAAKAIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSP---LASAITGATIYVDNGL 285 (297)
T ss_dssp CCSSCCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred chhhhccccHHHHHHhhccCC---------CCCCCCHHHHHHHHHHHhCc---cccCCCCCEEEECCCc
Confidence 864432 2333222221111 12356799999999877641 1234678999998874
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-15 Score=143.73 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=152.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
...+|+++||||++-||+.+++.|.++| .+|.+.|+.. +.. ...+.+ ...++..+.+|++|++++.++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~--------~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~ 76 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRA--------TLLAESVDTLTRKGYDAHGVAFDVTDELAIEAA 76 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCH--------HHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 4568999999999999999999999999 5999954432 210 000001 134688899999999988776
Q ss_pred hc-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCC
Q 007866 82 LE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~ 142 (586)
++ +.|++||+||.. .+..+++..+++|+.|+.++.+++.. .+-.++|++||.....
T Consensus 77 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~----- 151 (255)
T 4g81_D 77 FSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA----- 151 (255)
T ss_dssp HHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----
Confidence 64 479999999976 23456889999999999888876532 2446999999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~ 217 (586)
+.....+|+.||...+.+.+.++. .+|+++.++-||.+..+...... +.+.+.+.+..|.
T Consensus 152 ----------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl----- 216 (255)
T 4g81_D 152 ----------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPS----- 216 (255)
T ss_dssp ----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTT-----
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCC-----
Confidence 123356799999998888776643 26899999999999765321111 1122222222211
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.-+...+|+|.+++.++- ....-..|+++.+.+|
T Consensus 217 ----~R~g~pediA~~v~fL~S---~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 217 ----QRWGRPEELIGTAIFLSS---KASDYINGQIIYVDGG 250 (255)
T ss_dssp ----CSCBCGGGGHHHHHHHHS---GGGTTCCSCEEEESTT
T ss_pred ----CCCcCHHHHHHHHHHHhC---chhCCCcCCEEEECCC
Confidence 124568999999886653 1134578999999876
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=141.09 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=153.5
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l 78 (586)
|++ ...+|+++||||++-||+.+++.|.+.| .+|.+.|+.. +.....+.+ ...++..+.+|+.|++++
T Consensus 1 M~~-~L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~--------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 70 (258)
T 4gkb_A 1 MDL-NLQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHA--------PDGAFLDALAQRQPRATYLPVELQDDAQC 70 (258)
T ss_dssp CCC-CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSC--------CCHHHHHHHHHHCTTCEEEECCTTCHHHH
T ss_pred CCC-CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCc--------ccHHHHHHHHhcCCCEEEEEeecCCHHHH
Confidence 544 3578999999999999999999999999 5888855432 211000000 235688999999999887
Q ss_pred HHHhc-------CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCC
Q 007866 79 KKVLE-------GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~ 142 (586)
.++++ +.|++||+||... ...+++..+++|+.++.++.+++..+ +-.++|++||...+.
T Consensus 71 ~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----- 145 (258)
T 4gkb_A 71 RDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT----- 145 (258)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH-----
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc-----
Confidence 76654 5899999999751 23457888999999998888776432 126899999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH------HHHHHhcCCCceE
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP------LLVNLAKPGWTKF 213 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~------~l~~~~~~g~~~~ 213 (586)
+......|+.||...+.+.+.++. .+|+++.++-||.+-.+....... ...+......|.
T Consensus 146 ----------~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl- 214 (258)
T 4gkb_A 146 ----------GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL- 214 (258)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT-
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC-
Confidence 123356899999998888876653 368999999999997664322111 111112121110
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+-+...+|+|.+++.++. +...-..|+++.+.+|.
T Consensus 215 -------g~R~g~peeiA~~v~fLaS---~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 215 -------GRRFTTPDEIADTAVFLLS---PRASHTTGEWLFVDGGY 250 (258)
T ss_dssp -------TTSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred -------CCCCcCHHHHHHHHHHHhC---chhcCccCCeEEECCCc
Confidence 0235568999999887653 11345789999998874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=144.44 Aligned_cols=218 Identities=16% Similarity=0.144 Sum_probs=150.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|.++||||++-||+.+++.|.+.| .+|.+.|+.... +. .....+ ..+...+.+|+.|+++++++++
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~-l~------~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDV-LD------AAIAEI-GGGAVGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH------HHHHHH-CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH------HHHHHc-CCCeEEEEecCCCHHHHHHHHHHH
Confidence 357899999999999999999999999 599995554310 00 000111 3467889999999988887764
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+||.. ....+++..+++|+.|+.++.+++... .-.++|++||.....
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~------------ 165 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST------------ 165 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS------------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc------------
Confidence 479999999976 124467899999999999999988654 124799999987641
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-------HHHHHHhcCCCceEEEcCCC
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-------PLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~-------~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.....+|+.||...+.+.+.++. .+|+++.++-||.+-.+...... ..+.+...+..|.
T Consensus 166 ---~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Pl------- 235 (273)
T 4fgs_A 166 ---GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPM------- 235 (273)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTT-------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCC-------
Confidence 112346899999999888776643 36899999999998765422111 1122222222211
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.-+...+|+|.+++.++- ....-..|+++.+.+|.
T Consensus 236 --gR~g~peeiA~~v~FLaS---d~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 236 --GRVGRAEEVAAAALFLAS---DDSSFVTGAELFVDGGS 270 (273)
T ss_dssp --SSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred --CCCcCHHHHHHHHHHHhC---chhcCccCCeEeECcCh
Confidence 124558999999987663 11345789999998764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-14 Score=138.61 Aligned_cols=223 Identities=12% Similarity=-0.004 Sum_probs=151.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||++-||+.+++.|.++| .+|.+.|+.... +... ...+.. ...++..+.+|+.|++++.++++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~-~~~~--~~~i~~--~g~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDR-LNQI--VQELRG--MGKEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHH
Confidence 3568999999999999999999999999 599996654310 0000 000000 23468899999999998887664
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+.|++||+||... ...+++..+++|+.|+.++.+++. +++-.++|++||.....
T Consensus 78 ~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~-------- 149 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR-------- 149 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------
T ss_pred HHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC--------
Confidence 5899999999541 234578899999999988877664 34556999999987641
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.....+|+.||.....+.+.++.+ +|+++.++-||.+-.+..... -....+...+..+
T Consensus 150 -------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-------- 214 (254)
T 4fn4_A 150 -------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS-------- 214 (254)
T ss_dssp -------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT--------
T ss_pred -------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC--------
Confidence 1234568999999988887766432 689999999999876532211 1111111110000
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...-+-..+|+|.+++.++- ....-..|+++.+.+|-
T Consensus 215 ~~~R~g~pediA~~v~fLaS---d~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 215 LSSRLAEPEDIANVIVFLAS---DEASFVNGDAVVVDGGL 251 (254)
T ss_dssp TCCCCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhC---chhcCCcCCEEEeCCCc
Confidence 00123458999999987653 11345789999998864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=138.37 Aligned_cols=222 Identities=14% Similarity=0.042 Sum_probs=150.7
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+|+++||||+| -||+.++++|.++| .+|.+.|+.... + .+-..........++..+.+|+.|++++.++++
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~-~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERS-R---KELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGG-H---HHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHH-H---HHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 4689999999987 79999999999999 599985554210 0 000000111234568899999999988876664
Q ss_pred -------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~~~~~~ 143 (586)
++|++||+||... ...++...+++|..++..+..++...- -.++|++||.....
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~------ 152 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF------ 152 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 5899999999641 112245567889988888888776542 24899999986541
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCC--cHHHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQ--LVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.||...+.+.+.++.+ +|+++.++-||.+-.+.... ..+...+...+..|.
T Consensus 153 ---------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl------ 217 (256)
T 4fs3_A 153 ---------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPL------ 217 (256)
T ss_dssp ---------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT------
T ss_pred ---------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCC------
Confidence 2234568999999988887766432 68999999999887654322 223334433332221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.-+...+|+|.+++.++. ....-..|+++.+.+|-
T Consensus 218 ---~R~g~peevA~~v~fL~S---d~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 218 ---KRNVDQVEVGKTAAYLLS---DLSSGVTGENIHVDSGF 252 (256)
T ss_dssp ---SSCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred ---CCCcCHHHHHHHHHHHhC---chhcCccCCEEEECcCH
Confidence 124568999999986653 11345789999998763
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=150.89 Aligned_cols=196 Identities=17% Similarity=0.114 Sum_probs=142.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+++++|||||+|.||.+++++|.++|..+|.+. .|+.... .+...+ ...++.++.+|+.|.+++.+
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~--------~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~ 309 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLT--------SRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAA 309 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEE--------ESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEE--------eCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 348999999999999999999999995477773 3332110 000001 13468899999999999999
Q ss_pred HhcC------CCEEEEcccCC-C-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 81 VLEG------ASTVFYVDATD-L-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 81 ~l~~------~D~Vih~aa~~-~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+++. +|+|||+||.. . ...+.+..+++|+.|+.++.+++...+.++||++||.+.+..
T Consensus 310 ~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g-------- 381 (496)
T 3mje_A 310 LLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWG-------- 381 (496)
T ss_dssp HHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTT--------
T ss_pred HHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCC--------
Confidence 8863 69999999975 1 123467889999999999999999998999999999876521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHh-cCCCceEEEcCCCcccccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLA-KPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~-~~g~~~~i~g~g~~~~~~i 225 (586)
......|+.+|...+.+.+.+.. .|++++++.||.+.+.+.... ......+ +.| ...+
T Consensus 382 -------~~g~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~-~~~~~~l~~~g------------~~~l 440 (496)
T 3mje_A 382 -------SGGQPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATD-PEVHDRLVRQG------------VLAM 440 (496)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC-------CHHHHHTT------------EEEE
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccC-hHHHHHHHhcC------------CCCC
Confidence 13456899999999999987765 699999999998876543211 0011111 111 1235
Q ss_pred chhHHHHHHHHHHH
Q 007866 226 YVENVAHAHVCAAE 239 (586)
Q Consensus 226 ~v~Dva~ai~~ale 239 (586)
..++.++++..++.
T Consensus 441 ~pe~~~~~l~~~l~ 454 (496)
T 3mje_A 441 EPEHALGALDQMLE 454 (496)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 68899999998887
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5e-14 Score=137.21 Aligned_cols=219 Identities=13% Similarity=0.054 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||++-||+.+++.|.++| .+|.+.|+.... ....... -...++..+.+|+.|++++.++++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~~-----~~~~~~~--~~g~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAPD-----ETLDIIA--KDGGNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCCH-----HHHHHHH--HTTCCEEEEECCTTSTTTTTTSSTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcHH-----HHHHHHH--HhCCcEEEEEccCCCHHHHHHHHHh
Confidence 4578999999999999999999999999 589886654210 0000000 023468899999999988877765
Q ss_pred -CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCC-CCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 -GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECK-VRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 -~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~g-vkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
+.|++||+||.. ....+++..+++|+.|+..+.+++. +.| -.++|++||.....
T Consensus 78 g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------- 144 (247)
T 4hp8_A 78 AGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------- 144 (247)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC-------------
Confidence 489999999976 2344688999999999988887653 333 35899999987641
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCcccccc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.||.....+.+.++.+ +|+++.++-||.+-.|...... +...+...+..| ..-+-
T Consensus 145 --g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~P---------lgR~g 213 (247)
T 4hp8_A 145 --GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIP---------AGRWG 213 (247)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCT---------TSSCB
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCC---------CCCCc
Confidence 1123468999999988887766432 6899999999998655321111 112222223222 22245
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..+|+|.+++.++- ....-..|+++.+.+|
T Consensus 214 ~peeiA~~v~fLaS---d~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 214 HSEDIAGAAVFLSS---AAADYVHGAILNVDGG 243 (247)
T ss_dssp CTHHHHHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhC---chhcCCcCCeEEECcc
Confidence 68999999886553 1134578999999876
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=145.07 Aligned_cols=196 Identities=19% Similarity=0.076 Sum_probs=140.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC-----------CCCC---CCC--CCCCeEEEEc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN-----------SLLP---DSL--SSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~-----------~~~~---~~l--~~~~~~~~~~ 70 (586)
.++++|||||+|.||.+++++|.++|..+|.+. . .|+... .... ..+ ...++.++.+
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~-~------~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~ 322 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLH-T------TPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTC 322 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEE-E------CCCC---------------CHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEE-e------CCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEEC
Confidence 468999999999999999999999996346663 0 333210 0000 001 1246889999
Q ss_pred cCCCHHHHHHHhcC------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCC-----CCEEEEecC
Q 007866 71 DVRDISQIKKVLEG------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECK-----VRRLVYNST 132 (586)
Q Consensus 71 Dl~d~~~l~~~l~~------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~g-----vkr~I~~SS 132 (586)
|+.|.+++.++++. +|+|||+||... ...+.+..+++|+.|+.++.+++.... ..+||++||
T Consensus 323 Dvtd~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 323 DLTDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp CTTSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 99999999998864 599999999762 233467889999999999999998876 789999999
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHh-cCCCc
Q 007866 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLA-KPGWT 211 (586)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~-~~g~~ 211 (586)
.+.+.. ......|+.+|...+.+...+.. .|++++++.||.+-++.... ....... ..|
T Consensus 403 ~a~~~g---------------~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~~--~~~~~~~~~~g-- 462 (525)
T 3qp9_A 403 VAAIWG---------------GAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVTE--GATGERLRRLG-- 462 (525)
T ss_dssp GGGTTC---------------CTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGGS--SHHHHHHHHTT--
T ss_pred HHHcCC---------------CCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCccccccccc--hhhHHHHHhcC--
Confidence 877521 13457899999999999877655 69999999999982211100 0111111 111
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
...+..+++++++..++.
T Consensus 463 ----------~~~l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 463 ----------LRPLAPATALTALDTALG 480 (525)
T ss_dssp ----------BCCBCHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHh
Confidence 234679999999999987
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=138.72 Aligned_cols=236 Identities=10% Similarity=-0.045 Sum_probs=126.5
Q ss_pred CCCCCCCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCccc---ccCCCCCCC------------CCCCCCCCC
Q 007866 1 MPFDEAIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQSL---QLDPSESNS------------LLPDSLSSG 63 (586)
Q Consensus 1 M~~~~~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~~---~l~r~~~~~------------~~~~~l~~~ 63 (586)
|....+.+++++|||| +|.||++++++|+++| ++|.+.|+.... .-.|..++. .....+...
T Consensus 2 m~~~~l~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (319)
T 2ptg_A 2 PLPVDLRGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEK 80 (319)
T ss_dssp CCCCCCTTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC----------------------------
T ss_pred CcccccCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhc
Confidence 4333356789999999 8999999999999999 588886642100 000000000 000111100
Q ss_pred -----CeEEEEccC------------CC--------HHHHHHHh-------cCCCEEEEcccCCC---------CCCChh
Q 007866 64 -----RAEYHQVDV------------RD--------ISQIKKVL-------EGASTVFYVDATDL---------NTDDFY 102 (586)
Q Consensus 64 -----~~~~~~~Dl------------~d--------~~~l~~~l-------~~~D~Vih~aa~~~---------~~~~~~ 102 (586)
....+.+|+ .| .+++.+++ .++|++||+||... ...+++
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~ 160 (319)
T 2ptg_A 81 PVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYL 160 (319)
T ss_dssp ----CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHH
T ss_pred cccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHH
Confidence 124444442 22 12333332 36899999998531 223467
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC--
Q 007866 103 NCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI-- 177 (586)
Q Consensus 103 ~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~-~~Y~~sK~~~E~~l~~~~~~-- 177 (586)
..+++|+.|+.++.+++... .-.++|++||...+.. .... ..|+.||+..+.+.+.++.+
T Consensus 161 ~~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~ 225 (319)
T 2ptg_A 161 AAVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKV---------------IPGYGGGMSSAKAALESDCRTLAFEAG 225 (319)
T ss_dssp HHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC---------------------------------THHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHhcCceEEEEeccccccc---------------cCccchhhHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999998764 1158999999876521 1122 47999999999888877543
Q ss_pred --CCceEEEEeCCCcccCCCCCcHH----HHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCc
Q 007866 178 --DGLLTCALRPSNVFGPGDTQLVP----LLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251 (586)
Q Consensus 178 --~gl~~~ilRp~~v~G~~~~~~~~----~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~ 251 (586)
+|+++.+++||.+..+....... .+...... ......+...+...+|+|++++.++.. ......|+
T Consensus 226 ~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~---~~~~itG~ 297 (319)
T 2ptg_A 226 RARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSP---LARAVTGA 297 (319)
T ss_dssp HHHCCEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSG---GGTTCCSC
T ss_pred cccCeeEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCc---ccCCccCC
Confidence 58999999999997653221100 00000000 000111222356899999999877641 12457889
Q ss_pred EEEEeCCCC
Q 007866 252 AFFITNLEP 260 (586)
Q Consensus 252 ~~ni~~~~~ 260 (586)
.+.+.++..
T Consensus 298 ~i~vdGG~~ 306 (319)
T 2ptg_A 298 TLYVDNGLH 306 (319)
T ss_dssp EEEESTTCT
T ss_pred EEEECCCce
Confidence 999988753
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=140.79 Aligned_cols=227 Identities=14% Similarity=0.031 Sum_probs=138.4
Q ss_pred CCCCCeEEEEcC--CCchHHHHHHHHHhcCCcEEEEecCCcc-------cccCCCCCCCCCCCCCCCCCeEEEEcc----
Q 007866 5 EAIPRTCVVLNG--RGFVGRSLVLRLLELGKCIVRVTDSTQS-------LQLDPSESNSLLPDSLSSGRAEYHQVD---- 71 (586)
Q Consensus 5 ~~~~~~IlVTGa--tG~IG~~lv~~L~~~g~~~V~~~d~~~~-------~~l~r~~~~~~~~~~l~~~~~~~~~~D---- 71 (586)
.+.+|+++|||| +|.||++++++|+++| ++|++.++... ....+......+...........+.+|
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 84 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFD 84 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccc
Confidence 346789999999 8999999999999999 58888654210 000000000000000000012333333
Q ss_pred --------CCC--------HHHHHHHh-------cCCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHH
Q 007866 72 --------VRD--------ISQIKKVL-------EGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTAC 119 (586)
Q Consensus 72 --------l~d--------~~~l~~~l-------~~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa 119 (586)
+.| .+++.+++ .++|++||+||... ...+++..+++|+.|+.++.+++
T Consensus 85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 164 (315)
T 2o2s_A 85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF 164 (315)
T ss_dssp STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence 332 22333333 36899999998531 22346788999999999999998
Q ss_pred HhCC--CCEEEEecCccccccCCCCCCCCCCCcccCCCCC-ChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCccc
Q 007866 120 RECK--VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ-DLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFG 192 (586)
Q Consensus 120 ~~~g--vkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~-~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G 192 (586)
...- -.++|++||...+.. .... ..|+.||+..+.+.+.++.+ +|+++.+++||.+..
T Consensus 165 ~~~m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T 229 (315)
T 2o2s_A 165 GPIMNEGGSAVTLSYLAAERV---------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229 (315)
T ss_dssp STTEEEEEEEEEEEEGGGTSC---------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHHhcCCEEEEEeccccccc---------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence 6541 158999999876521 1112 47999999999988876543 589999999999865
Q ss_pred CCCC--------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 193 PGDT--------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 193 ~~~~--------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+... .....+....... .+...+...+|+|++++.++.. ......|+.+.+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~---~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 230 RAASAIGKSGEKSFIDYAIDYSYNN---------APLRRDLHSDDVGGAALFLLSP---LARAVSGVTLYVDNGL 292 (315)
T ss_dssp HHHHHTTCSSSSCHHHHHHHHHHHH---------SSSCCCCCHHHHHHHHHHHTSG---GGTTCCSCEEEESTTG
T ss_pred hhhhhccccccchhHHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHhCc---hhccCcCCEEEECCCe
Confidence 3100 0001111111000 0112356799999999876641 1245678999998874
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.3e-13 Score=149.77 Aligned_cols=252 Identities=13% Similarity=0.041 Sum_probs=155.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|.||++++++|+++| ++|++.|+..... ..++.... .....+...+ ....+|+.|.+++.++++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG-GEAVADYNSVIDGAKVIE 94 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTT-CCEEECCCCGGGHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhC-CeEEEEeCCHHHHHHHHH
Confidence 457899999999999999999999999 5999966522100 00011100 0000011111 123589999887777665
Q ss_pred -------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCC
Q 007866 84 -------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|++||+||... ...+++..+++|+.|+.++.+++ ++.+..++|++||.+.+..
T Consensus 95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~------- 167 (613)
T 3oml_A 95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYG------- 167 (613)
T ss_dssp ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHC-------
T ss_pred HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC-------
Confidence 4799999999762 23457889999999999999988 5566679999999876521
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
......|+.||+..+.+.+.++.+ +|+++.++.|+.+- +...... .....
T Consensus 168 --------~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~------------------~~~~~ 220 (613)
T 3oml_A 168 --------NFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL------------------PDILF 220 (613)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC------------------CHHHH
T ss_pred --------CCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc------------------chhhh
Confidence 234568999999999888877543 58999999998531 1100100 11223
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC--------------------CcCHHHHHHHHHHHcCCCCCCcc
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE--------------------PIKFWDFLSIILEGLGYQRPFIK 282 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~--------------------~~t~~ei~~~i~~~~g~~~~~i~ 282 (586)
..+..+|+|.+++.++. +.....|+.+++.+|. ..+..++.+...+...... ..
T Consensus 221 ~~~~pedvA~~v~~L~s----~~~~~tG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~w~~i~~~~~--~~ 294 (613)
T 3oml_A 221 NELKPKLIAPVVAYLCH----ESCEDNGSYIESAAGWATKLHMVRGKGAVLRPSLDDPVTIEYVKDVWSNVTDMSK--AK 294 (613)
T ss_dssp TTCCGGGTHHHHHHTTS----TTCCCCSCEEEEETTEEEEECCCBCCCCCSSSSTTSCCCHHHHHHTHHHHTCCTT--CB
T ss_pred hcCCHHHHHHHHHHhcC----CCcCCCceEEEECCCeEEEEEEEecCCEEecCccccCCCHHHHHHHHHHhhcccc--Cc
Confidence 45678999999886654 1234678888887651 1355566666666655443 33
Q ss_pred CCHHHHHHHHHHHHHHH
Q 007866 283 LPTGVVWYIILLVKWIH 299 (586)
Q Consensus 283 vp~~~~~~~~~~~~~~~ 299 (586)
.|.........+++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~ 311 (613)
T 3oml_A 295 HLGAIAEASGTLLEVLE 311 (613)
T ss_dssp CCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 44444444444444443
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-12 Score=129.21 Aligned_cols=170 Identities=8% Similarity=-0.063 Sum_probs=115.5
Q ss_pred CCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCC-----CCCC-CCCCCCeEEEEccCCCH--H
Q 007866 8 PRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNS-----LLPD-SLSSGRAEYHQVDVRDI--S 76 (586)
Q Consensus 8 ~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~-~l~r~~~~~-----~~~~-~l~~~~~~~~~~Dl~d~--~ 76 (586)
+|+++||||++ .||.+++++|.++| ++|.+.++.... -+.|+.++. .... ......+..+.+|+.+. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 58999999875 99999999999999 588865432200 001110000 0000 00112467788888766 5
Q ss_pred ------------------HHHHHhc-------CCCEEEEcccCC---------CCCCChhHHHHHHHHHHHHHHHHHHhC
Q 007866 77 ------------------QIKKVLE-------GASTVFYVDATD---------LNTDDFYNCYMIIVQGAKNVVTACREC 122 (586)
Q Consensus 77 ------------------~l~~~l~-------~~D~Vih~aa~~---------~~~~~~~~~~~~Nv~gt~~lleaa~~~ 122 (586)
++.++++ ++|++||+||.. ....+++..+++|+.|+.++.+++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5554442 589999999853 123346889999999999999988764
Q ss_pred CC--CEEEEecCccccccCCCCCCCCCCCcccCCCCCC-hHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 007866 123 KV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD-LMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (586)
Q Consensus 123 gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~-~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G~ 193 (586)
-. .++|++||...+.. ..... .|+.||+..+.+.+.++.+ +|+++.++.||.+-.+
T Consensus 161 m~~~g~Iv~isS~~~~~~---------------~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKV---------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccCC---------------CCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 11 48999999876421 12233 7999999999888776543 4899999999988644
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=133.44 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=115.7
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCC-CCCCCCCCC--CCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSES-NSLLPDSLS--SGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~-IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-~~~~~~~l~--~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+.+++++||||+|. ||+++++.|+++| ++|++.+.... .+... ...+...+. ..++.++.+|+.|.+++.++
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~R~~---e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaL 549 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFS---KQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL 549 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEESSCS---TTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeCCCH---HHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHH
Confidence 35688999999998 9999999999999 48888532110 00000 000111111 23578899999999888776
Q ss_pred hc-------------CCCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHHHhC------CCCEEEEecC
Q 007866 82 LE-------------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYNST 132 (586)
Q Consensus 82 l~-------------~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa~~~------gvkr~I~~SS 132 (586)
++ ++|+|||+||.... ..+++..+++|+.++.++.++++.. +-.++|++||
T Consensus 550 Ve~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISS 629 (1688)
T 2pff_A 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP 629 (1688)
T ss_dssp HHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCS
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEC
Confidence 53 48999999997521 1235788999999999999987332 1248999999
Q ss_pred ccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH-HHhhcCCCC--ceEEEEeCCCccc
Q 007866 133 ADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFG 192 (586)
Q Consensus 133 ~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~-l~~~~~~~g--l~~~ilRp~~v~G 192 (586)
.+.... ....|+.||+..+.+ .+..+...+ ++++++.||.+-|
T Consensus 630 iAG~~G-----------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 630 NHGTFG-----------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp CTTTSS-----------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred hHhccC-----------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence 765311 235799999999998 444444322 8888899998874
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-10 Score=132.57 Aligned_cols=226 Identities=10% Similarity=-0.016 Sum_probs=144.3
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCC--CCCCeEEEEccCCCHHH
Q 007866 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSL--SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~-IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l--~~~~~~~~~~Dl~d~~~ 77 (586)
+.++++|||||+|. ||.+++++|+++|. +|++.+. |..... .+...+ ...++.++.+|+.|.++
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA-~VVl~~~-------R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~es 721 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGA-KVIVTTS-------RFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQD 721 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEES-------SCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEec-------CChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHH
Confidence 35689999999999 99999999999994 8888532 211100 000011 12357889999999999
Q ss_pred HHHHhc-----------CCCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHHHhC------CCCEEEEe
Q 007866 78 IKKVLE-----------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACREC------KVRRLVYN 130 (586)
Q Consensus 78 l~~~l~-----------~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa~~~------gvkr~I~~ 130 (586)
+.++++ .+|+|||+||.... ..+++..+++|+.|+.++.++++.. +-.++|++
T Consensus 722 V~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnI 801 (1878)
T 2uv9_A 722 VEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPL 801 (1878)
T ss_dssp HHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEE
T ss_pred HHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEE
Confidence 887763 48999999997521 1345788999999999998774321 22589999
Q ss_pred cCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcc-cCCCCCcHHHHHHHh
Q 007866 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVF-GPGDTQLVPLLVNLA 206 (586)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~-G~~~~~~~~~l~~~~ 206 (586)
||...+.. ....|+.+|+..+.+.+.+..+ .+++++++.||.+- .+.... ........
T Consensus 802 SS~ag~~g-----------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~-~~~~~~~~ 863 (1878)
T 2uv9_A 802 SPNHGTFG-----------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA-NNLVAEGV 863 (1878)
T ss_dssp CSCSSSSS-----------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH-HHHTHHHH
T ss_pred cchhhccC-----------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc-chhhHHHH
Confidence 99865411 1357999999999886543211 13999999999886 332111 11111111
Q ss_pred cCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccc-ccCCCcEEEEe--CCC--CcCHHHHHHHHH
Q 007866 207 KPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM-VSVAGMAFFIT--NLE--PIKFWDFLSIIL 271 (586)
Q Consensus 207 ~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~-~~~~g~~~ni~--~~~--~~t~~ei~~~i~ 271 (586)
.. .+ . .....+|+|.+++.++... . ....|+.+.+. ++. ...+.++...+.
T Consensus 864 ~~-~p---------l-r~~sPeEVA~avlfLaSd~---a~s~iTGq~I~VDVDGG~~~~~~l~el~~~lr 919 (1878)
T 2uv9_A 864 EK-LG---------V-RTFSQQEMAFNLLGLMAPA---IVNLCQSDPVFADLNGGLQFIPDLKGLMTKLR 919 (1878)
T ss_dssp HT-TT---------C-CCBCHHHHHHHHHHHHSHH---HHHHHTTSCEEEEESCSGGGCTTHHHHHHHHH
T ss_pred Hh-cC---------C-CCCCHHHHHHHHHHHhCCc---ccccccCcEEEEEcCCCccccCCHHHHHHHHH
Confidence 11 10 1 2337899999988766410 1 12457777773 442 245666655443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-10 Score=123.15 Aligned_cols=224 Identities=15% Similarity=0.091 Sum_probs=147.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccC-CCHHHHH-H-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDV-RDISQIK-K- 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl-~d~~~l~-~- 80 (586)
+.+++++||||++-||+.++++|.++| ++|++.|+.. .+ .....+ ...++..+.+|+ .+.+.+. +
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~-------~~--~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~ 389 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKD-------AT--KTVDEIKAAGGEAWPDQHDVAKDSEAIIKNV 389 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSC-------CH--HHHHHHHHTTCEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCcc-------HH--HHHHHHHhcCCeEEEEEcChHHHHHHHHHHH
Confidence 346899999999999999999999999 4888855421 00 000011 122455677888 5544432 2
Q ss_pred --HhcCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 81 --VLEGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 81 --~l~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
.+.+.|++||+||... ...+++..+++|+.|+.++.+++. +.+-.++|++||.+...
T Consensus 390 ~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~---------- 459 (604)
T 2et6_A 390 IDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY---------- 459 (604)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------
Confidence 2346899999999751 234578899999999988887764 34456999999986541
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.||+....+.+.++.+ +|+++.++-|+. - +....... . ....+.
T Consensus 460 -----~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~----T~m~~~~~----~----------~~~~~~ 515 (604)
T 2et6_A 460 -----GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-E----TAMTLSIM----R----------EQDKNL 515 (604)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-C----CCC-----------------------CCS
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-C----CccccccC----c----------hhhccC
Confidence 1123468999999988887766432 689999999983 1 11111100 0 001234
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC-----------------CCcCHHHHHHHHHHHcCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL-----------------EPIKFWDFLSIILEGLGYQ 277 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~-----------------~~~t~~ei~~~i~~~~g~~ 277 (586)
...+|+|.+++.++. .... ..|+++.+.++ ..++..++.+.+.+.....
T Consensus 516 ~~pe~vA~~v~~L~s---~~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 581 (604)
T 2et6_A 516 YHADQVAPLLVYLGT---DDVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDFT 581 (604)
T ss_dssp SCGGGTHHHHHHTTS---TTCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHhC---CccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhccc
Confidence 578999999886553 1123 78888888775 2367777777777766543
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=130.00 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hcCCcEEEEecCCcccccCCCCCCCC----CCCCC--CCCCeEEEEccCCCHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL--SSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~-~~g~~~V~~~d~~~~~~l~r~~~~~~----~~~~l--~~~~~~~~~~Dl~d~~~l~ 79 (586)
++++++||||+|.||+.++++|. ++|..+|.++ .|+..... ....+ ...++..+.+|+.|.+++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~--------~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~ 600 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLV--------SRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLA 600 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEE--------ESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHH
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEe--------ccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHH
Confidence 56899999999999999999999 7895467774 44321100 00111 1346888999999999999
Q ss_pred HHhcC------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCC
Q 007866 80 KVLEG------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 80 ~~l~~------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++++. .|+|||+||... ...+++..+++|+.|+.|+.+++. ... +||++||.+.+..
T Consensus 601 ~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~-~~l-~iV~~SS~ag~~g-------- 670 (795)
T 3slk_A 601 KVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID-PDV-ALVLFSSVSGVLG-------- 670 (795)
T ss_dssp HHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC-TTS-EEEEEEETHHHHT--------
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh-hCC-EEEEEccHHhcCC--------
Confidence 98864 599999999862 234577889999999999999883 334 8999999876521
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGP 193 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~ 193 (586)
......|+.+|...+.+.+++.. .|++++++-||.+-.+
T Consensus 671 -------~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 671 -------SGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp -------CSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 23456899999999999888766 6999999999987644
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=133.98 Aligned_cols=224 Identities=10% Similarity=0.042 Sum_probs=143.7
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-----CCCCCC--CCCCeEEEEccCCCHHH
Q 007866 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-----LLPDSL--SSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 6 ~~~~~IlVTGatG~-IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-----~~~~~l--~~~~~~~~~~Dl~d~~~ 77 (586)
+.+++++||||+|. ||+++++.|+++| ++|++.+. |..... .+...+ ...++.++.+|+.|.++
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~~-------R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~s 744 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTS-------RFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQD 744 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEES-------SCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEec-------CCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHH
Confidence 45689999999998 9999999999999 48888432 221100 000001 12357889999999998
Q ss_pred HHHHhc-------------CCCEEEEcccCCCC----------CCChhHHHHHHHHHHHHHHHHHHhCC------CCEEE
Q 007866 78 IKKVLE-------------GASTVFYVDATDLN----------TDDFYNCYMIIVQGAKNVVTACRECK------VRRLV 128 (586)
Q Consensus 78 l~~~l~-------------~~D~Vih~aa~~~~----------~~~~~~~~~~Nv~gt~~lleaa~~~g------vkr~I 128 (586)
+.++++ ++|+|||+||.... ..+++..+++|+.++.++.++++... -.++|
T Consensus 745 V~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IV 824 (1887)
T 2uv8_A 745 VEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL 824 (1887)
T ss_dssp HHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEE
Confidence 887663 48999999997622 13357889999999999999885432 24899
Q ss_pred EecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHH-HHhhcCCCC--ceEEEEeCCCcccCC-CC--CcHHHH
Q 007866 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEAL-VLFANNIDG--LLTCALRPSNVFGPG-DT--QLVPLL 202 (586)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~-l~~~~~~~g--l~~~ilRp~~v~G~~-~~--~~~~~l 202 (586)
++||...+.. ....|+.||+..+.+ .+.++.+.+ ++++++.||.+-|.+ .. ......
T Consensus 825 nISS~ag~~g-----------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~ 887 (1887)
T 2uv8_A 825 PMSPNHGTFG-----------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEG 887 (1887)
T ss_dssp EECSCTTCSS-----------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHH
T ss_pred EEcChHhccC-----------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHH
Confidence 9999865421 235799999999998 454443322 999999999998421 11 111111
Q ss_pred HHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEe--CCC--CcCHHHHHHHH
Q 007866 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFIT--NLE--PIKFWDFLSII 270 (586)
Q Consensus 203 ~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~--~~~--~~t~~ei~~~i 270 (586)
.. . .+ . .+...+|+|.+++.++.... .....|+.+.+. ++. ...+.++...+
T Consensus 888 ~~---~-~p---------l-r~~sPEEVA~avlfLaSd~~--as~iTGq~I~VDVDGG~~~~~~l~el~~~l 943 (1887)
T 2uv8_A 888 IE---K-MG---------V-RTFSQKEMAFNLLGLLTPEV--VELCQKSPVMADLNGGLQFVPELKEFTAKL 943 (1887)
T ss_dssp HH---T-TS---------C-CCEEHHHHHHHHHGGGSHHH--HHHHHHSCEEEEESCSTTTSSSHHHHHHHH
T ss_pred HH---h-cC---------C-CCCCHHHHHHHHHHHhCCCc--cccccCcEEEEECCCCeeccccHHHHHHHH
Confidence 11 0 00 1 23368999999986653100 012345677763 442 23455554433
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.4e-10 Score=121.99 Aligned_cols=235 Identities=15% Similarity=0.115 Sum_probs=144.6
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCCC-CCCCCCCCCCeEEEEccCCCHH--
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNS-LLPDSLSSGRAEYHQVDVRDIS-- 76 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~-- 76 (586)
|+...+.++.++||||++-||+.++++|.++| ++|.+.|+..... ..|+.+.. .....+...+.+ ..+|+.|.+
T Consensus 1 m~~~~l~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~ 78 (604)
T 2et6_A 1 MSPVDFKDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDG 78 (604)
T ss_dssp -CCCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCH
T ss_pred CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHH
Confidence 54434567899999999999999999999999 5998866542100 00111100 000011111112 234665543
Q ss_pred -HH-H---HHhcCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCC
Q 007866 77 -QI-K---KVLEGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 77 -~l-~---~~l~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~ 140 (586)
.+ + +.+.+.|++||+||... ...+++..+++|+.|+.++.+++. +.+-.++|++||.+....
T Consensus 79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~-- 156 (604)
T 2et6_A 79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG-- 156 (604)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC--
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC--
Confidence 22 2 22346899999999751 234578899999999988887664 344569999999865421
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
......|+.||...+.+.+.++. .+|+++.++-|+ + .+. +......
T Consensus 157 -------------~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~----~T~----m~~~~~~--------- 205 (604)
T 2et6_A 157 -------------NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-A----RSR----MTESIMP--------- 205 (604)
T ss_dssp -------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-C----CCH----HHHTTSC---------
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-C----cCc----cccccCC---------
Confidence 12346899999998888776653 268999999996 2 111 1111100
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC------------------CCcCHHHHHHHHHHHcC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL------------------EPIKFWDFLSIILEGLG 275 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~------------------~~~t~~ei~~~i~~~~g 275 (586)
.........+|+|.+++.++. +.....|+.+.+.++ ..++..++.+.+.+...
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s----~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 276 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSS----AENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILD 276 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTS----SSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTC
T ss_pred -hhhhccCCHHHHHHHHHHHhC----CcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhc
Confidence 011233578999999987654 123466888888765 23566777777766553
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=95.88 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++|+|+|+|+ |++|+.+++.|.+.|.++|+++|+.. ++. ..+...++..+.+|+.+.+.+.++++++|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~--------~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDL--------AAL---AVLNRMGVATKQVDAKDEAGLAKALGGFD 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCH--------HHH---HHHHTTTCEEEECCTTCHHHHHHHTTTCS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCH--------HHH---HHHHhCCCcEEEecCCCHHHHHHHHcCCC
Confidence 4689999999 99999999999999944899955543 210 01113467889999999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
+|||+++.. .+.++++++.+.|++++...++.
T Consensus 72 ~vi~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~ 103 (118)
T 3ic5_A 72 AVISAAPFF---------------LTPIIAKAAKAAGAHYFDLTEDV 103 (118)
T ss_dssp EEEECSCGG---------------GHHHHHHHHHHTTCEEECCCSCH
T ss_pred EEEECCCch---------------hhHHHHHHHHHhCCCEEEecCcH
Confidence 999998532 13578999999999766654443
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-09 Score=108.08 Aligned_cols=173 Identities=9% Similarity=-0.053 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh-cCCcEEEEecCCcccccCCCC-C-----CCCCCCCC--CCCCeEEEEccCCCHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSE-S-----NSLLPDSL--SSGRAEYHQVDVRDIS 76 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~-~g~~~V~~~d~~~~~~l~r~~-~-----~~~~~~~l--~~~~~~~~~~Dl~d~~ 76 (586)
..+|+++||||++-||+.+++.|.+ .| .+|.+.++.... ..... + .......+ ....+..+.+|+.|.+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~-~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~ 122 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPG-EEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDE 122 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCC-BTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchh-hhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 4578999999999999999999999 99 588886553210 00000 0 00000011 1345788999999998
Q ss_pred HHHHHhc-------CCCEEEEcccCC---------------C--------------------------CCCChhHHHHHH
Q 007866 77 QIKKVLE-------GASTVFYVDATD---------------L--------------------------NTDDFYNCYMII 108 (586)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~---------------~--------------------------~~~~~~~~~~~N 108 (586)
++.++++ ++|++||+||.. . ...+++.++++|
T Consensus 123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn 202 (405)
T 3zu3_A 123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM 202 (405)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence 8776664 479999999863 0 122356667777
Q ss_pred HHHHH-HHHHHHHhCCC----CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---C-C
Q 007866 109 VQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---D-G 179 (586)
Q Consensus 109 v~gt~-~lleaa~~~gv----kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~-g 179 (586)
..+.. .++.++...+. .++|.+||.+..-. .+......|+.+|...+.+.+.++.+ + |
T Consensus 203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~-------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G 269 (405)
T 3zu3_A 203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT-------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGG 269 (405)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG-------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc-------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 76665 55555543221 47999999865310 01122378999999999887766532 6 8
Q ss_pred ceEEEEeCCCcccC
Q 007866 180 LLTCALRPSNVFGP 193 (586)
Q Consensus 180 l~~~ilRp~~v~G~ 193 (586)
+++.++-|+.+-.+
T Consensus 270 IRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 270 GDARVSVLKAVVSQ 283 (405)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEEeCCCcCc
Confidence 99999999988654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-10 Score=118.43 Aligned_cols=174 Identities=10% Similarity=0.010 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCC----cccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDST----QSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS 76 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~----~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~ 76 (586)
++|||+||||+||+|++++..|+..|. .+|+++|+. ... ... ....+.+.. ... ..|+....
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~--~~g-~~~dl~~~~--~~~---~~~i~~~~ 75 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKA--LQG-VMMEIDDCA--FPL---LAGMTAHA 75 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHH--HHH-HHHHHHTTT--CTT---EEEEEEES
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCcccccc--chh-hHHHHhhhc--ccc---cCcEEEec
Confidence 357999999999999999999999884 279998775 210 000 000000000 011 12444334
Q ss_pred HHHHHhcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCC-CC-EEEEecCccccccCCCCCCCCCCCcccC
Q 007866 77 QIKKVLEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECK-VR-RLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~g-vk-r~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
.+.++++++|+|||+|+... +..+...+...|+.+++++++++.+++ .+ ++|++|...-.-..-. ....+.
T Consensus 76 ~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~--~~~~~~---- 149 (329)
T 1b8p_A 76 DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA--MKSAPS---- 149 (329)
T ss_dssp SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH--HHTCTT----
T ss_pred CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH--HHHcCC----
Confidence 46778999999999999763 344567889999999999999999984 66 8999987531100000 000001
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCC
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPG 194 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~ 194 (586)
..+...|+.++....++...+++..|++...++...++|..
T Consensus 150 ~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 150 LPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred CCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 11223466666666666665555567776677766778854
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-09 Score=108.54 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=112.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-cCCcEEEEecCCcccccCCCCCCC---------CCCCCC--CCCCeEEEEccCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNS---------LLPDSL--SSGRAEYHQVDVRD 74 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~-~g~~~V~~~d~~~~~~l~r~~~~~---------~~~~~l--~~~~~~~~~~Dl~d 74 (586)
.+|++|||||++-||+.+++.|.+ .| .+|.+.++... +..... .....+ ....+..+.+|+.|
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~----~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd 134 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKP----GTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS 134 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCC----CCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCch----hhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC
Confidence 478999999999999999999999 99 58888655431 100000 000011 12457889999999
Q ss_pred HHHHHHHh--------cCCCEEEEcccCC----------------C-------------------------CCCChhHHH
Q 007866 75 ISQIKKVL--------EGASTVFYVDATD----------------L-------------------------NTDDFYNCY 105 (586)
Q Consensus 75 ~~~l~~~l--------~~~D~Vih~aa~~----------------~-------------------------~~~~~~~~~ 105 (586)
.+++.+++ .++|++||+||.. . ...+++..+
T Consensus 135 ~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v 214 (422)
T 3s8m_A 135 DAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTI 214 (422)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 88776554 3479999999861 0 111234455
Q ss_pred HHHHHHHH-HHHHHHHhCCC----CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---
Q 007866 106 MIIVQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--- 177 (586)
Q Consensus 106 ~~Nv~gt~-~lleaa~~~gv----kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--- 177 (586)
++|..+.. .++.++...+. .++|.+||.+..-. .+......|+.||...+.+.+.++.+
T Consensus 215 ~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~-------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~ 281 (422)
T 3s8m_A 215 TVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEIT-------------WPIYWHGALGKAKVDLDRTAQRLNARLAK 281 (422)
T ss_dssp HHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG-------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc-------------CCCccchHHHHHHHHHHHHHHHHHHHhCc
Confidence 55655543 55666554332 47999999865310 01122368999999998887766432
Q ss_pred CCceEEEEeCCCcccCC
Q 007866 178 DGLLTCALRPSNVFGPG 194 (586)
Q Consensus 178 ~gl~~~ilRp~~v~G~~ 194 (586)
+|+++.++-||.+--+.
T Consensus 282 ~GIRVNaVaPG~i~T~~ 298 (422)
T 3s8m_A 282 HGGGANVAVLKSVVTQA 298 (422)
T ss_dssp TTCEEEEEEECCCCCTT
T ss_pred cCEEEEEEEcCCCcChh
Confidence 68999999999987654
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=105.24 Aligned_cols=174 Identities=9% Similarity=-0.071 Sum_probs=113.3
Q ss_pred CCCCeEEEEcCCCchHHH--HHHHHHhcCCcEEEEecCCcccccCCCCC-----CCCCCCC--CCCCCeEEEEccCCCHH
Q 007866 6 AIPRTCVVLNGRGFVGRS--LVLRLLELGKCIVRVTDSTQSLQLDPSES-----NSLLPDS--LSSGRAEYHQVDVRDIS 76 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~--lv~~L~~~g~~~V~~~d~~~~~~l~r~~~-----~~~~~~~--l~~~~~~~~~~Dl~d~~ 76 (586)
..+|+++||||++-||.. +++.|.+.| .+|.++++.......+... ....... -....+..+.+|+.|.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 357899999999999999 999999999 5888866543210000000 0000000 01345788999999998
Q ss_pred HHHHHhc-------CCCEEEEcccCC---------------C--------------------------CCCChhHHHHHH
Q 007866 77 QIKKVLE-------GASTVFYVDATD---------------L--------------------------NTDDFYNCYMII 108 (586)
Q Consensus 77 ~l~~~l~-------~~D~Vih~aa~~---------------~--------------------------~~~~~~~~~~~N 108 (586)
++.++++ ++|++||+||.. . ...++...+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 8777664 479999999863 0 111234455555
Q ss_pred HHHHH-HHHHHHHhCCC----CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CC
Q 007866 109 VQGAK-NVVTACRECKV----RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DG 179 (586)
Q Consensus 109 v~gt~-~lleaa~~~gv----kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~g 179 (586)
..+.. .++.++...+. .++|.+||.+..- +.+......|+.+|...+.+.+.++.+ .|
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~-------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR-------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG-------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC-------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 55444 55566554432 3789999875431 112223378999999999888877643 58
Q ss_pred ceEEEEeCCCcccC
Q 007866 180 LLTCALRPSNVFGP 193 (586)
Q Consensus 180 l~~~ilRp~~v~G~ 193 (586)
+++.++-||.+-.+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999988654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-09 Score=106.12 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
++|||+||||+|++|..++..|++.|. .+|+++|+... +. ....+.+... .... .+ +.+..++.++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~----~~-~~~dL~~~~~--~~~v-~~-~~~t~d~~~al~ga 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA----PG-VTADISHMDT--GAVV-RG-FLGQQQLEAALTGM 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH----HH-HHHHHHTSCS--SCEE-EE-EESHHHHHHHHTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc----Hh-HHHHhhcccc--cceE-EE-EeCCCCHHHHcCCC
Confidence 457999999999999999999998872 27999887542 00 0000111000 1111 22 23355677889999
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
|+|||+|+... .......+...|+.+++++++++.+.+.+.+|+++|.
T Consensus 78 DvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp SEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999999763 2333467789999999999999999988888888764
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-08 Score=104.00 Aligned_cols=119 Identities=9% Similarity=-0.003 Sum_probs=80.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecC--CcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDS--TQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~--~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|||+||||+|++|++++..|+..|. .++.++|+ .... .+. ....+.+ .+...++.....| +++.++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~--~~~-~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ 73 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINK--LEG-LREDIYDALAGTRSDANIYVES----DENLRIID 73 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHH--HHH-HHHHHHHHHTTSCCCCEEEEEE----TTCGGGGT
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhh--hHH-HHHHHHHhHHhcCCCeEEEeCC----cchHHHhC
Confidence 5899999999999999999998874 35888887 3210 000 0000000 0111123333222 12456789
Q ss_pred CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
|+|+|||+|+... +......+.+.|+.+++++++++++++ +++|+++|--+
T Consensus 74 gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv 125 (313)
T 1hye_A 74 ESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPV 125 (313)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSH
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcH
Confidence 9999999999762 344557789999999999999999999 88888887533
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-08 Score=124.32 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=113.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~----~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.+++++||||+|-||+.+++.|.++|..+|.+ ..|+..+.. ....+ ...++..+.+|+.|.+++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl--------~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~ 1954 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVL--------TSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARS 1954 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEE--------ECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEE--------EeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHH
Confidence 46899999999999999999999999534777 344432110 00001 12357788999999998877
Q ss_pred Hhc------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCC
Q 007866 81 VLE------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 81 ~l~------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+++ .+|+|||+||.. ....+++..+++|+.|+.++.+++... ...+||++||.+...
T Consensus 1955 ~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~-------- 2026 (2512)
T 2vz8_A 1955 LITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR-------- 2026 (2512)
T ss_dssp HHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT--------
T ss_pred HHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC--------
Confidence 664 479999999975 134567888999999999998887653 346999999987642
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~ 191 (586)
.......|+.+|...+.+.+.... .|++...+..+.+-
T Consensus 2027 -------g~~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2027 -------GNAGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIG 2064 (2512)
T ss_dssp -------TCTTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBC
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 112346899999999999986554 48888887776553
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-08 Score=102.70 Aligned_cols=116 Identities=9% Similarity=-0.008 Sum_probs=79.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecC--CcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhcC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDS--TQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~--~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|||+||||+|++|++++..|+..|+. ++.++|+ .... +. . ....+.+.. ...++.... | + .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~-~-~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TV-G-QAADTNHGIAYDSNTRVRQ-G--G----YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HH-H-HHHHHHHHHTTTCCCEEEE-C--C----GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HH-H-HHHHHHHHHhhCCCcEEEe-C--C----HHHhCC
Confidence 68999999999999999999988742 5888777 3310 00 0 000000000 012233332 2 2 346889
Q ss_pred CCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
+|+|||+|+... +......+...|+.+++++++++++++.+.+|+++|--
T Consensus 71 aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP 121 (303)
T 1o6z_A 71 SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (303)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 999999999762 33345678899999999999999999988888887653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-07 Score=78.23 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
++++|+|+|+ |.+|+.+++.|.+.|+ +|+++|.... +. ..+...+...+.+|..|.+.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~-~v~~~d~~~~--------~~---~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 71 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEE--------KV---NAYASYATHAVIANATEENELLSLGIRNF 71 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHH--------HH---HTTTTTCSEEEECCTTCHHHHHTTTGGGC
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHH--------HH---HHHHHhCCEEEEeCCCCHHHHHhcCCCCC
Confidence 4678999998 9999999999999994 8888665431 10 011122456788999998888776 7889
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
|+||++++.. . +.|. .+.+.+++.+++++|..++...+
T Consensus 72 d~vi~~~~~~-----~----~~~~----~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 72 EYVIVAIGAN-----I----QAST----LTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp SEEEECCCSC-----H----HHHH----HHHHHHHHTTCSEEEEECCSHHH
T ss_pred CEEEECCCCc-----h----HHHH----HHHHHHHHcCCCeEEEEeCCHHH
Confidence 9999988642 1 2232 36677888888887776665443
|
| >2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-08 Score=79.21 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 007866 444 GFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDDWNTFFK 494 (586)
Q Consensus 444 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n~~~~~~~~l~~~~d~~~~lk 494 (586)
++|++.+++.++.||+|.++++++.+..++|.+++++|+|++++|+++|+|
T Consensus 29 ~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 29 GHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp TCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred CCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 455566666669999999999999999999999999999999999999986
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-07 Score=94.63 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++|+|+| +|++|+++++.|.+.| ++|+++|+.... .. .+...+ .++..+.+|+.|.+++.++++++|
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~~~~----a~---~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~D 70 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRTLES----AK---KLSAGV--QHSTPISLDVNDDAALDAEVAKHD 70 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESSHHH----HH---HTTTTC--TTEEEEECCTTCHHHHHHHHTTSS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECCHHH----HH---HHHHhc--CCceEEEeecCCHHHHHHHHcCCc
Confidence 468999997 8999999999999999 489986554310 00 111111 246788999999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHH--H-------HHHHHHHHHHHHhCCCC
Q 007866 87 TVFYVDATDLNTDDFYNCYMI--I-------VQGAKNVVTACRECKVR 125 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~--N-------v~gt~~lleaa~~~gvk 125 (586)
+|||+++......-.....+. | ...+.+++++|+++|++
T Consensus 71 vVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 71 LVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp EEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred EEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 999999864211001111221 2 23678899999999984
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-05 Score=100.33 Aligned_cols=169 Identities=12% Similarity=0.009 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCc-hHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGF-VGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~-IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+|+++||||++- ||+.+++.|++.| .+|.+.++...... ..........+ ...++..+.+|+.|.+++.+++
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~--~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDR--LAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHH--HHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhh--hHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 46799999999999 9999999999999 59988554321000 00000000111 1234678899999998887764
Q ss_pred ----c-------CCCEEEEcccC----C--------CCCCCh----hHHHHHHHHHHHHHHHHHHh----CCCC---EEE
Q 007866 83 ----E-------GASTVFYVDAT----D--------LNTDDF----YNCYMIIVQGAKNVVTACRE----CKVR---RLV 128 (586)
Q Consensus 83 ----~-------~~D~Vih~aa~----~--------~~~~~~----~~~~~~Nv~gt~~lleaa~~----~gvk---r~I 128 (586)
+ +.|++||+||. . ....++ +...++|..++..++.++.. .+.. .+|
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 2 37999999997 1 011223 33488899888887776643 3321 222
Q ss_pred EecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC----CCceEEEEeCCCcccC
Q 007866 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI----DGLLTCALRPSNVFGP 193 (586)
Q Consensus 129 ~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~----~gl~~~ilRp~~v~G~ 193 (586)
..+|.. .+ .......|+.||...+.+.+.++.+ .++.++.+-||.+-+.
T Consensus 2291 ~~~ss~-~g---------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT 2343 (3089)
T 3zen_D 2291 LPGSPN-RG---------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGT 2343 (3089)
T ss_dssp EEECSS-TT---------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECS
T ss_pred EECCcc-cc---------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCC
Confidence 222211 10 0112347999999999988877655 3588999999888643
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.7e-06 Score=82.67 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=77.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|||.|+||+|++|..++..|+..|. .+|.++|+... ......+.+.....++....+ ..++.++++++|+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~-----~~~a~dL~~~~~~~~l~~~~~----t~d~~~a~~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-----PGVAADLSHIETRATVKGYLG----PEQLPDCLKGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-----HHHHHHHTTSSSSCEEEEEES----GGGHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc-----HHHHHHHhccCcCceEEEecC----CCCHHHHhCCCCE
Confidence 5899999999999999999998872 38999888641 000001111111112222211 1234667899999
Q ss_pred EEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecC
Q 007866 88 VFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (586)
Q Consensus 88 Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS 132 (586)
||++++... ...+.......|+..++.+++.+.+.+.. ++|++|-
T Consensus 72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999999862 33344567899999999999999887643 7777654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.8e-06 Score=72.57 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
.|++|+|+|+ |.+|+++++.|.++|+ +|+++|..+. .. +.+...+...+.+|..|++.+.++ ++++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~-~V~~id~~~~--------~~---~~~~~~~~~~~~gd~~~~~~l~~~~~~~~ 71 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGK-KVLAVDKSKE--------KI---ELLEDEGFDAVIADPTDESFYRSLDLEGV 71 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTC-CEEEEESCHH--------HH---HHHHHTTCEEEECCTTCHHHHHHSCCTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEECCHH--------HH---HHHHHCCCcEEECCCCCHHHHHhCCcccC
Confidence 4678999987 9999999999999994 9999766532 10 011123578899999999988876 4679
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
|+||.+.+. . +.|. .+...+++.+..++|-
T Consensus 72 d~vi~~~~~------~----~~n~----~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 72 SAVLITGSD------D----EFNL----KILKALRSVSDVYAIV 101 (141)
T ss_dssp SEEEECCSC------H----HHHH----HHHHHHHHHCCCCEEE
T ss_pred CEEEEecCC------H----HHHH----HHHHHHHHhCCceEEE
Confidence 999987652 1 2333 3455666666555553
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.07 E-value=6.6e-06 Score=72.15 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D 86 (586)
+|+|+|+|+ |++|+.+++.|.+.|+ +|+++|.... . ........++..+.+|..+.+.+.+. ++++|
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~-~v~~~d~~~~--------~--~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d 71 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGH-DIVLIDIDKD--------I--CKKASAEIDALVINGDCTKIKTLEDAGIEDAD 71 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH--------H--HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHH--------H--HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCC
Confidence 579999987 9999999999999994 8999665431 1 00000012466788999998887765 67899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+||++... . +.| ..+.+.++..+.+++|..+
T Consensus 72 ~vi~~~~~------~----~~~----~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGK------E----EVN----LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp EEEECCSC------H----HHH----HHHHHHHHHTTCCCEEEEC
T ss_pred EEEEeeCC------c----hHH----HHHHHHHHHcCCCEEEEEe
Confidence 99998643 1 223 2456677778877777543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.3e-07 Score=91.19 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=78.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc-E-----EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-I-----VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~-~-----V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
++||+||||+|+||++++..|...|.. + ++++|+........... ..+.+. ..+-...+.. .+...+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a-~DL~~~-~~~~~~~~~~----~~~~~~~ 76 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL-MELQDC-ALPLLKDVIA----TDKEEIA 76 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHHT-CCTTEEEEEE----ESCHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhH-hhhHhh-hhcccCCEEE----cCCcHHH
Confidence 579999999999999999999987642 3 88988743100000000 000000 0011111111 1223567
Q ss_pred hcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC--EEEEecCc
Q 007866 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR--RLVYNSTA 133 (586)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk--r~I~~SS~ 133 (586)
++++|+|||+||.. .+..+....++.|+..++++++++++++.+ +++.+|-.
T Consensus 77 ~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp TTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 89999999999976 334456678899999999999999999865 57777743
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-06 Score=86.66 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCC-CCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSS-GRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~-~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++||||+|.+|++++..|.+.|. +|+++++.. ++. .+...+.. .++..+.+|+.|.+++.++++
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~--------~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 187 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL--------DKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 187 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCH--------HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHH
Confidence 3568999999999999999999999995 798855432 110 00000000 135678899999999999999
Q ss_pred CCCEEEEcccCC
Q 007866 84 GASTVFYVDATD 95 (586)
Q Consensus 84 ~~D~Vih~aa~~ 95 (586)
++|+|||+++..
T Consensus 188 ~~DvlVn~ag~g 199 (287)
T 1lu9_A 188 GAHFVFTAGAIG 199 (287)
T ss_dssp TCSEEEECCCTT
T ss_pred hCCEEEECCCcc
Confidence 999999999864
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-06 Score=89.71 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~--~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
|++|+|+|| |++|+.+++.|.+.|+. +|.+.|+.. ++. .+...+ ...++..+.+|+.|.+++.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~--------~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~ 71 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL--------SKCQEIAQSIKAKGYGEIDITTVDADSIEELVAL 71 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH--------HHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH--------HHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHH
Confidence 479999999 99999999999999852 788855543 210 000001 013578899999999999999
Q ss_pred hcC--CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 82 LEG--ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 82 l~~--~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
+++ +|+|||+++... ...++++|.++|+.
T Consensus 72 l~~~~~DvVin~ag~~~---------------~~~v~~a~l~~g~~ 102 (405)
T 4ina_A 72 INEVKPQIVLNIALPYQ---------------DLTIMEACLRTGVP 102 (405)
T ss_dssp HHHHCCSEEEECSCGGG---------------HHHHHHHHHHHTCC
T ss_pred HHhhCCCEEEECCCccc---------------ChHHHHHHHHhCCC
Confidence 987 999999987520 13578899999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0001 Score=66.17 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHH-hc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKV-LE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~-l~ 83 (586)
..+++|+|+|+ |.+|+.+++.|.+.|+ +|+++|... ++. ..+. ..+...+.+|..+.+.+.++ ++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~-~V~vid~~~--------~~~---~~~~~~~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGH-SVVVVDKNE--------YAF---HRLNSEFSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCG--------GGG---GGSCTTCCSEEEESCTTSHHHHHTTTGG
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCH--------HHH---HHHHhcCCCcEEEecCCCHHHHHHcCcc
Confidence 35689999985 9999999999999994 999966543 211 1112 23567788999888877765 78
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHh-CCCCEEEEecCc
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVYNSTA 133 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~-~gvkr~I~~SS~ 133 (586)
++|+||.+.+.. ..| ..+.+.++. .+..+++...+.
T Consensus 84 ~ad~Vi~~~~~~----------~~~----~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 84 KADMVFAFTNDD----------STN----FFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GCSEEEECSSCH----------HHH----HHHHHHHHHTSCCSEEEEECSS
T ss_pred cCCEEEEEeCCc----------HHH----HHHHHHHHHHCCCCeEEEEECC
Confidence 899999987531 112 345556666 677676655543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.3e-05 Score=82.91 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
..|||+|.|| |++|+.+++.|.+. ++|.+.|+.... + + . .......+..|+.|.+++.++++++|
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~-~----~-----~--~~~~~~~~~~d~~d~~~l~~~~~~~D 79 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNEN-L----E-----K--VKEFATPLKVDASNFDKLVEVMKEFE 79 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHH-H----H-----H--HTTTSEEEECCTTCHHHHHHHHTTCS
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHH-H----H-----H--HhccCCcEEEecCCHHHHHHHHhCCC
Confidence 4579999998 99999999998754 478886664310 0 0 0 12346778899999999999999999
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+||+++++. . ...++++|.++|+ +++=+|
T Consensus 80 vVi~~~p~~-------~--------~~~v~~~~~~~g~-~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGF-------L--------GFKSIKAAIKSKV-DMVDVS 108 (365)
T ss_dssp EEEECCCGG-------G--------HHHHHHHHHHHTC-EEEECC
T ss_pred EEEEecCCc-------c--------cchHHHHHHhcCc-ceEeee
Confidence 999998652 0 1358899999997 565443
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=79.96 Aligned_cols=73 Identities=18% Similarity=0.054 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHHHHhhcC------------------CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEc
Q 007866 155 KFQDLMCDLKAQAEALVLFANN------------------IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 155 ~p~~~Y~~sK~~~E~~l~~~~~------------------~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g 216 (586)
+-..|+|.++..+|.+...... ..++.+.++|-+.++|...= ...-.|+.+.+..
T Consensus 163 K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~vvg~h~v-------~f~~~ge~i~i~H 235 (273)
T 1dih_A 163 KVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTA-------MFADIGERLEITH 235 (273)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEEEECTTCCEEEEE-------EEEETTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCccccccccccCccCCCCCCcceEEEEeCCCCCccEEE-------EEcCCCcEEEEEE
Confidence 3357899999999999875432 35688999999999986430 0011233333322
Q ss_pred CCCccccccchhH-HHHHHHHHHHHh
Q 007866 217 SGENMSDFTYVEN-VAHAHVCAAEAL 241 (586)
Q Consensus 217 ~g~~~~~~i~v~D-va~ai~~ale~~ 241 (586)
-.+-++ +|...+.|.+++
T Consensus 236 -------~a~~R~~fa~Ga~~Aa~~l 254 (273)
T 1dih_A 236 -------KASSRMTFANGAVRSALWL 254 (273)
T ss_dssp -------EECSTHHHHHHHHHHHHHH
T ss_pred -------EeCCHHHHHHHHHHHHHHH
Confidence 223333 588888888765
|
| >2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A | Back alignment and structure |
|---|
Probab=97.78 E-value=6.6e-07 Score=65.85 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007866 444 GFNVKRISPSCFELSETVIKDSIARIAFLWNMGFRNIRLLAKGDD 488 (586)
Q Consensus 444 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n~~~~~~~~l~~~~d 488 (586)
++|++.+++.++.||+|.++++++.+..++|.+++.+|+||+++|
T Consensus 16 ~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 16 GHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred CCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 578888888889999999999999999999999999999999997
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.1e-05 Score=71.90 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEc
Q 007866 7 IPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (586)
Q Consensus 7 ~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~ 70 (586)
.+|+|||||| +|.+|.+++++|+++|+ +|+++ .|..... . ....++..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-~V~lv--------~~~~~~~---~-~~~~~~~~~-- 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-EVCLI--------TTKRALK---P-EPHPNLSIR-- 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-EEEEE--------ECTTSCC---C-CCCTTEEEE--
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-EEEEE--------eCCcccc---c-cCCCCeEEE--
Confidence 4799999999 99999999999999994 88883 4432210 0 012244444
Q ss_pred cCCCHHH----HHHHhcCCCEEEEcccCC
Q 007866 71 DVRDISQ----IKKVLEGASTVFYVDATD 95 (586)
Q Consensus 71 Dl~d~~~----l~~~l~~~D~Vih~aa~~ 95 (586)
|+.+.++ +.+.+.++|++||+||..
T Consensus 67 ~v~s~~em~~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 67 EITNTKDLLIEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp ECCSHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred EHhHHHHHHHHHHHhcCCCCEEEEcCccc
Confidence 5555444 344456799999999986
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=86.04 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+++|+|+|+ |++|+.+++.|.+.+..+|+++|+. .++. .+.. ..++..+.+|+.|.+++.++++++
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~--------~~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~~~ 89 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRT--------LANAQALAK---PSGSKAISLDVTDDSALDKVLADN 89 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESS--------HHHHHHHHG---GGTCEEEECCTTCHHHHHHHHHTS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECC--------HHHHHHHHH---hcCCcEEEEecCCHHHHHHHHcCC
Confidence 4679999997 9999999999999833589995543 2211 0111 124667789999999999999999
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+|||+++..
T Consensus 90 DvVIn~tp~~ 99 (467)
T 2axq_A 90 DVVISLIPYT 99 (467)
T ss_dssp SEEEECSCGG
T ss_pred CEEEECCchh
Confidence 9999998764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.6e-05 Score=69.88 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHH-hcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKV-LEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~ 84 (586)
..++|+|+|+ |.+|+++++.|.+.|+ +|+++|... ++.. .+.. ....++..+.+|..|++.+.++ +++
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~-~V~vid~~~-------~~~~~~~~~-~~~~~~~~i~gd~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQ-NVTVISNLP-------EDDIKQLEQ-RLGDNADVIPGDSNDSSVLKKAGIDR 71 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCC-------HHHHHHHHH-HHCTTCEEEESCTTSHHHHHHHTTTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCC-------hHHHHHHHH-hhcCCCeEEEcCCCCHHHHHHcChhh
Confidence 3478999986 9999999999999995 899865531 0000 0000 0123578999999999999887 899
Q ss_pred CCEEEEccc
Q 007866 85 ASTVFYVDA 93 (586)
Q Consensus 85 ~D~Vih~aa 93 (586)
+|+||-+.+
T Consensus 72 ad~vi~~~~ 80 (153)
T 1id1_A 72 CRAILALSD 80 (153)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEecC
Confidence 999998764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=80.76 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=77.6
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC-CCCCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~-~l~~~~~~~~~~Dl~d~~~l 78 (586)
|+.+=+.++||.|+|++|++|+.++..++..|. .+|.++|+.... .+... ..+.+ .+...++.. .. ..
T Consensus 1 ~~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k--~~g~a-~DL~~~~~~~~~i~~-t~------d~ 70 (343)
T 3fi9_A 1 MSLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVG--LEGVA-EEIRHCGFEGLNLTF-TS------DI 70 (343)
T ss_dssp -CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHH--HHHHH-HHHHHHCCTTCCCEE-ES------CH
T ss_pred CCccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchh--HHHHH-HhhhhCcCCCCceEE-cC------CH
Confidence 666656789999999999999999999998883 379998876421 00000 00000 011112221 11 23
Q ss_pred HHHhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE--EEEecC
Q 007866 79 KKVLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR--LVYNST 132 (586)
Q Consensus 79 ~~~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr--~I~~SS 132 (586)
.++++++|+||.+||.. .+..+.....+.|+...+.+.+.+.+.+.+- ++.+|-
T Consensus 71 ~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 71 KEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp HHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred HHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 56789999999999976 2333456778999999999999998876543 455553
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=68.65 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEE
Q 007866 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (586)
Q Consensus 5 ~~~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~ 68 (586)
.+.+++|||||| +|.+|..++++|.++| ++|++++. ... +. ...++.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~--------~~~---l~---~~~g~~-- 67 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSG--------PVS---LP---TPPFVK-- 67 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEEC--------SCC---CC---CCTTEE--
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEEC--------Ccc---cc---cCCCCe--
Confidence 456899999999 7999999999999999 58888432 211 00 012333
Q ss_pred EccCCCHHHHHHH----hcCCCEEEEcccCC
Q 007866 69 QVDVRDISQIKKV----LEGASTVFYVDATD 95 (586)
Q Consensus 69 ~~Dl~d~~~l~~~----l~~~D~Vih~aa~~ 95 (586)
.+|+.+.+++.+. +.++|++||+||..
T Consensus 68 ~~dv~~~~~~~~~v~~~~~~~Dili~~Aav~ 98 (226)
T 1u7z_A 68 RVDVMTALEMEAAVNASVQQQNIFIGCAAVA 98 (226)
T ss_dssp EEECCSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred EEccCcHHHHHHHHHHhcCCCCEEEECCccc
Confidence 5688886655443 45699999999976
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00032 Score=64.67 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH--hc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV--LE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~--l~ 83 (586)
.+++|+|+| .|.+|..+++.|.+. |+ +|+++|.... +. ..+...++..+.+|..+.+.+.++ ++
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~-~V~vid~~~~--------~~---~~~~~~g~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYGK-ISLGIEIREE--------AA---QQHRSEGRNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHCS-CEEEEESCHH--------HH---HHHHHTTCCEEECCTTCHHHHHTBCSCC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccCC-eEEEEECCHH--------HH---HHHHHCCCCEEEcCCCCHHHHHhccCCC
Confidence 357899998 599999999999999 95 8999665432 10 011123567888999999888877 78
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEE
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK-VRRLVY 129 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~ 129 (586)
++|+||.+.+. . +. ...+++.++..+ ..+++.
T Consensus 105 ~ad~vi~~~~~------~----~~----~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 105 HVKLVLLAMPH------H----QG----NQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp CCCEEEECCSS------H----HH----HHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEeCCC------h----HH----HHHHHHHHHHHCCCCEEEE
Confidence 89999987642 1 12 234556677766 445443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00018 Score=68.42 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=66.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
|+|+|+|+ |.+|+++++.|.++|+ +|+++|.... .. .......+...+.+|..|.+.+.++ ++++|+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~-~v~vid~~~~--------~~--~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~ 68 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY-GVVIINKDRE--------LC--EEFAKKLKATIIHGDGSHKEILRDAEVSKNDV 68 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC-CEEEEESCHH--------HH--HHHHHHSSSEEEESCTTSHHHHHHHTCCTTCE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-eEEEEECCHH--------HH--HHHHHHcCCeEEEcCCCCHHHHHhcCcccCCE
Confidence 58999996 9999999999999995 8999665432 10 0000112578899999999999886 788999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHh-CCCCEEEE
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~-~gvkr~I~ 129 (586)
||-+.+.. +.| ..+...+++ .+..++|-
T Consensus 69 vi~~~~~d----------~~n----~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 69 VVILTPRD----------EVN----LFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp EEECCSCH----------HHH----HHHHHHHHHTSCCCEEEE
T ss_pred EEEecCCc----------HHH----HHHHHHHHHHcCCCeEEE
Confidence 99765321 123 224455555 67777764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00038 Score=71.08 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcC-----CcEEEEecCCcccccCCCCCCCCCCCC---CCC-CCeEEEEccCCCHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELG-----KCIVRVTDSTQSLQLDPSESNSLLPDS---LSS-GRAEYHQVDVRDISQ 77 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g-----~~~V~~~d~~~~~~l~r~~~~~~~~~~---l~~-~~~~~~~~Dl~d~~~ 77 (586)
.|++|.|.||||++|+.+++.|.+++ +.+++.+... |+..+ .+... +.. ..+.. .|+ +.+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~------~~agk-~~~~~~~~l~~~~~~~~--~~~-~~~- 76 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAA------TSAGS-TLGEHHPHLTPLAHRVV--EPT-EAA- 76 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEES------SCTTS-BGGGTCTTCGGGTTCBC--EEC-CHH-
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECC------CcCCC-chhhhcccccccceeee--ccC-CHH-
Confidence 45799999999999999999999988 6677774221 11110 01100 100 11222 233 333
Q ss_pred HHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 78 IKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 78 l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
.+.++|+||.+.+... +..+++.+ +.|+ ++|-+|+..-
T Consensus 77 ---~~~~~DvVf~alg~~~---------------s~~~~~~~-~~G~-~vIDlSa~~R 114 (352)
T 2nqt_A 77 ---VLGGHDAVFLALPHGH---------------SAVLAQQL-SPET-LIIDCGADFR 114 (352)
T ss_dssp ---HHTTCSEEEECCTTSC---------------CHHHHHHS-CTTS-EEEECSSTTT
T ss_pred ---HhcCCCEEEECCCCcc---------------hHHHHHHH-hCCC-EEEEECCCcc
Confidence 3568999999887641 34467777 7886 7998998754
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00074 Score=66.33 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
|.|+||.|+|++|.+|+.+++.+.+....++.+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~ 37 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVG 37 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 456899999999999999999999876557665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00036 Score=61.38 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
..++|+|.|+ |.+|+.+++.|.+.|+ +|+++|..+. .. +.+...++..+.+|..+++.+.++ ++++
T Consensus 6 ~~~~viIiG~-G~~G~~la~~L~~~g~-~v~vid~~~~--------~~---~~~~~~g~~~i~gd~~~~~~l~~a~i~~a 72 (140)
T 3fwz_A 6 ICNHALLVGY-GRVGSLLGEKLLASDI-PLVVIETSRT--------RV---DELRERGVRAVLGNAANEEIMQLAHLECA 72 (140)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTC-CEEEEESCHH--------HH---HHHHHTTCEEEESCTTSHHHHHHTTGGGC
T ss_pred CCCCEEEECc-CHHHHHHHHHHHHCCC-CEEEEECCHH--------HH---HHHHHcCCCEEECCCCCHHHHHhcCcccC
Confidence 4568999986 9999999999999995 9999666542 10 111124678899999999988765 5789
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||-+.+.
T Consensus 73 d~vi~~~~~ 81 (140)
T 3fwz_A 73 KWLILTIPN 81 (140)
T ss_dssp SEEEECCSC
T ss_pred CEEEEECCC
Confidence 999987543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00076 Score=68.84 Aligned_cols=94 Identities=15% Similarity=0.029 Sum_probs=59.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCC-CCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSS-GRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~---l~~-~~~~~~~~Dl~d~~~l~~~l 82 (586)
++||.|.||||++|+.+++.|.++++.+++.+... .+.+ ..... +.. ... ++.+.+ + +
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~--------~~~g~~~~~~~~~~~g~~~~-----~~~~~~---~-~ 66 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR--------RFAGEPVHFVHPNLRGRTNL-----KFVPPE---K-L 66 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS--------TTTTSBGGGTCGGGTTTCCC-----BCBCGG---G-C
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc--------hhhCchhHHhCchhcCcccc-----cccchh---H-h
Confidence 57999999999999999999998876677763321 1111 01100 110 011 122222 2 5
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
.++|+||.+++.. .+..+++.+.++|+ ++|-.|+..
T Consensus 67 ~~vDvV~~a~g~~---------------~s~~~a~~~~~aG~-~VId~Sa~~ 102 (345)
T 2ozp_A 67 EPADILVLALPHG---------------VFAREFDRYSALAP-VLVDLSADF 102 (345)
T ss_dssp CCCSEEEECCCTT---------------HHHHTHHHHHTTCS-EEEECSSTT
T ss_pred cCCCEEEEcCCcH---------------HHHHHHHHHHHCCC-EEEEcCccc
Confidence 7899999988663 13456667778897 588888864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00041 Score=69.79 Aligned_cols=114 Identities=6% Similarity=0.014 Sum_probs=69.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEE-ccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQ-VDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~-~Dl~d~~~l~~~l~~ 84 (586)
+|||.|+|| |++|..++..|...|+..|.++|+.... + .... ..+.+.. .....+... .|. +++++
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~-~-~g~~-~dl~~~~~~~~~~~~i~~t~d~-------~a~~~ 70 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGV-P-QGKA-LDLYEASPIEGFDVRVTGTNNY-------ADTAN 70 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSH-H-HHHH-HHHHTTHHHHTCCCCEEEESCG-------GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccH-H-HHHH-HhHHHhHhhcCCCeEEEECCCH-------HHHCC
Confidence 479999998 9999999999999996469998876421 0 0000 0000000 001122222 232 35789
Q ss_pred CCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
+|+||.+++... +..........|....+.+.+.+.+.+.+.++...|
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 999999998762 222223456778888899999998887665555544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00088 Score=64.32 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
..++|+|+|+ |.+|+.+++.|.+.| + |+++|.. ++.. ..+. .++..+.+|..|++.+.++ ++++
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~--------~~~~---~~~~-~~~~~i~gd~~~~~~l~~a~i~~a 72 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSE-V-FVLAEDE--------NVRK---KVLR-SGANFVHGDPTRVSDLEKANVRGA 72 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCG--------GGHH---HHHH-TTCEEEESCTTCHHHHHHTTCTTC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECC--------HHHH---HHHh-cCCeEEEcCCCCHHHHHhcCcchh
Confidence 3578999987 999999999999999 5 8885443 3211 1111 4588999999999999877 8899
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEE
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I 128 (586)
|.||-+.+. + +.|. .+...+++.+.+ ++|
T Consensus 73 d~vi~~~~~-----d-----~~n~----~~~~~a~~~~~~~~ii 102 (234)
T 2aef_A 73 RAVIVDLES-----D-----SETI----HCILGIRKIDESVRII 102 (234)
T ss_dssp SEEEECCSC-----H-----HHHH----HHHHHHHHHCSSSEEE
T ss_pred cEEEEcCCC-----c-----HHHH----HHHHHHHHHCCCCeEE
Confidence 999987532 1 2333 345566766664 544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0016 Score=66.24 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+|+|+|.||||++|+.+++.|.+++| .+++.+. .+... +.... +. +......|+ |++ .+.++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~-------s~~~~-g~~~~-~~--g~~i~~~~~-~~~----~~~~~ 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA-------SAESA-GQRMG-FA--ESSLRVGDV-DSF----DFSSV 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE-------CTTTT-TCEEE-ET--TEEEECEEG-GGC----CGGGC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe-------cCCCC-CCccc-cC--CcceEEecC-CHH----HhcCC
Confidence 47899999999999999999997654 3455422 11111 00000 11 112211222 122 25789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||-+.+.. .+...++.+.++|++ +|-+|+..
T Consensus 70 DvV~~a~g~~---------------~s~~~a~~~~~aG~k-vId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAAE---------------VSRAHAERARAAGCS-VIDLSGAL 102 (340)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTCE-EEETTCTT
T ss_pred CEEEEcCCcH---------------HHHHHHHHHHHCCCE-EEEeCCCC
Confidence 9999987542 245677788888985 77777764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=66.88 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|+...+|+++|.|.||+|++|+.+++.|.+++..+|+++
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i 39 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTAL 39 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEE
Confidence 543333447999999999999999999998876677774
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0018 Score=65.32 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.++||.|+|+ |++|..++..|+..|. .+|.++|+.... .+.. ...+.+ .+...++.....| .++++
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k--~~g~-a~DL~~~~~~~~~~v~i~~~~-------~~a~~ 72 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEK--AMGD-VMDLNHGKAFAPQPVKTSYGT-------YEDCK 72 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH--HHHH-HHHHHHTGGGSSSCCEEEEEC-------GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHH--HHHH-HHHHHhccccccCCeEEEeCc-------HHHhC
Confidence 4689999996 9999999999999884 289998875421 0000 000000 0111234444333 24688
Q ss_pred CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
++|+||.+||... +..+.....+.|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 73 ~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 73 DADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 9999999999762 33345667889999999999999888644 455444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0031 Score=63.58 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCC-CCCCCCCC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSES-NSLLPDSL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~-~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+++||.|+|+ |++|..++..|...|. .+|.++|+... +... ...+.+.. ...++... . .+ .++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~----~~~g~~~dl~~~~~~~~~~~i~-~--~~----~~a~~ 73 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKE----KAIGEAMDINHGLPFMGQMSLY-A--GD----YSDVK 73 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC-------CCHHHHHHTTSCCCTTCEEEC-----C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChH----HHHHHHHHHHHhHHhcCCeEEE-E--CC----HHHhC
Confidence 3579999998 9999999999998873 27999888642 1110 00011110 00233332 2 22 34689
Q ss_pred CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
++|+||.+++... +..........|+...+.+++.+.+.+..-+|...|
T Consensus 74 ~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 74 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999998762 233345677889999999999998865443443333
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.004 Score=63.64 Aligned_cols=83 Identities=13% Similarity=0.040 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHH-hcCCcEEEEecCCcccccCCCCCCCCCCC-----------CC--CCCCeEEEEcc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNSLLPD-----------SL--SSGRAEYHQVD 71 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~-~~g~~~V~~~d~~~~~~l~r~~~~~~~~~-----------~l--~~~~~~~~~~D 71 (586)
..+|++|||||+.-+|.+.+..|. +.|. .+.++.... .+....... .. .......+.||
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~------~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~D 120 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEK------AGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGD 120 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCC------CCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCC------cccccccccccchhHHHHHHHHHHcCCCceeEeCC
Confidence 357999999999999999999888 5674 666633322 111100000 00 12457889999
Q ss_pred CCCHHHHHHHhc-------CCCEEEEcccCC
Q 007866 72 VRDISQIKKVLE-------GASTVFYVDATD 95 (586)
Q Consensus 72 l~d~~~l~~~l~-------~~D~Vih~aa~~ 95 (586)
+.|.+++.++++ ++|++||.+|..
T Consensus 121 v~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 121 AFSDEIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 999988877764 479999999975
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=68.30 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC---CCCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS---LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~---l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++++|.|.||+|++|+.+++.|.++++.+++++.... +.+ ..... +.. .+ ..|+.-.+ .+.+
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~--------~~g~~~~~~~~~~~~-~v---~~dl~~~~--~~~~ 80 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR--------KAGQSMESVFPHLRA-QK---LPTLVSVK--DADF 80 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST--------TTTSCHHHHCGGGTT-SC---CCCCBCGG--GCCG
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch--------hcCCCHHHhCchhcC-cc---cccceecc--hhHh
Confidence 3468999999999999999999998866777743211 111 00000 110 00 12332222 3355
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
+++|+||.+.+... +...+..+ ++|+ ++|-.|+..
T Consensus 81 ~~vDvVf~atp~~~---------------s~~~a~~~-~aG~-~VId~sa~~ 115 (359)
T 1xyg_A 81 STVDAVFCCLPHGT---------------TQEIIKEL-PTAL-KIVDLSADF 115 (359)
T ss_dssp GGCSEEEECCCTTT---------------HHHHHHTS-CTTC-EEEECSSTT
T ss_pred cCCCEEEEcCCchh---------------HHHHHHHH-hCCC-EEEECCccc
Confidence 78999999886531 23456666 7787 688888764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0044 Score=62.75 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCC---CCCC-CCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPD---SLSS-GRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~---~l~~-~~~~~~~~Dl~d~~~l~~~ 81 (586)
.|++|.|.||||++|+.+++.|.++.+.++..+...++ .+ +.+. ..+ .+.. .+..+... .|.+ ++
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~---~~--saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~ 72 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQ---SN--DAGKLISDLHPQLKGIVELPLQPM--SDIS---EF 72 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETT---CT--TTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GT
T ss_pred CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCc---hh--hcCCchHHhCccccCccceeEecc--CCHH---HH
Confidence 36899999999999999999999977668777433210 00 1111 000 0111 12233222 0222 22
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
.+++|+||-+.+.. .+...+..+.+.|+ ++|=.|+..
T Consensus 73 ~~~~Dvvf~a~p~~---------------~s~~~~~~~~~~g~-~vIDlSa~f 109 (337)
T 3dr3_A 73 SPGVDVVFLATAHE---------------VSHDLAPQFLEAGC-VVFDLSGAF 109 (337)
T ss_dssp CTTCSEEEECSCHH---------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred hcCCCEEEECCChH---------------HHHHHHHHHHHCCC-EEEEcCCcc
Confidence 27899999876431 13456666777887 688888764
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0033 Score=63.87 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
...||.|+||+|.||+.++..|..... .++.++|+........... -.+.+.........+.++ | ..+
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva-~DL~~~~~~~~~~~~~~~--~---~~~ 96 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVE-AELEDCAFPLLDKVVVTA--D---PRV 96 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH-HHHHHTTCTTEEEEEEES--C---HHH
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhh-hhhhhcCccCCCcEEEcC--C---hHH
Confidence 345999999999999999998876532 2688988754210000000 000000001112222222 2 256
Q ss_pred HhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCC-C-CEEEEecCc
Q 007866 81 VLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECK-V-RRLVYNSTA 133 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~g-v-kr~I~~SS~ 133 (586)
+++++|+||-+||.. .+........+.|..-.+.+.++..+.. - -.++.+|-.
T Consensus 97 a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 799999999999987 3455667889999999999999987753 2 256666643
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.002 Score=65.06 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..++||.|+|+ |.+|+.++..|+..|. .++.++|+.... ..... ..+.+ .+. .++.....| .+++
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k--~~g~a-~DL~~~~~~~-~~~~i~~~~-------~~a~ 74 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK--TKGDA-IDLEDALPFT-SPKKIYSAE-------YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH--HHHHH-HHHHTTGGGS-CCCEEEECC-------GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHH--HHHHH-hhHhhhhhhc-CCcEEEECc-------HHHh
Confidence 45689999996 9999999999999885 389998875421 00000 00000 011 234444333 2468
Q ss_pred cCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 83 EGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 83 ~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+++|+||.+||... +..+.....+.|+.-.+.+.+.+.+++.+ .++.+|
T Consensus 75 ~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp TTCSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred cCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 89999999999762 23334566788999899999999887644 444444
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0048 Score=62.15 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCC-CCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPS-ESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~-~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
++++||.|+|| |.+|..++..|...|. .+|.++|+.... +... .+-......+ ..++.... | + .++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~-~~g~~~dl~~~~~~~-~~~~~v~~-~--~----~~a~~ 73 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEK-VRGDVMDLKHATPYS-PTTVRVKA-G--E----YSDCH 73 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHH-HHHHHHHHHHHGGGS-SSCCEEEE-C--C----GGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-hhhhhhhHHhhhhhc-CCCeEEEe-C--C----HHHhC
Confidence 34689999998 9999999999998873 379998876421 0000 0000000111 12333332 2 2 44689
Q ss_pred CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
++|+||-+++... +..........|+.-.+.+.+.+.+.+..-++.+
T Consensus 74 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv 121 (317)
T 3d0o_A 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121 (317)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9999999998862 3334456678899999999999888865433333
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0047 Score=62.70 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|++|.|.||+|++|+.+++.|.++ ...+++.+... |+..+ .. .+....+.+ .|+. + +.++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~------~~~G~-~~--~~~~~~i~~--~~~~-~----~~~~~v 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASE------RSEGK-TY--RFNGKTVRV--QNVE-E----FDWSQV 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT------TTTTC-EE--EETTEEEEE--EEGG-G----CCGGGC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECC------CCCCC-ce--eecCceeEE--ecCC-h----HHhcCC
Confidence 579999999999999999999988 43466663221 11110 00 011112222 2321 1 134689
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||-+.+.. .+...++.+.++|+ ++|-.|+..
T Consensus 67 DvVf~a~g~~---------------~s~~~a~~~~~~G~-~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE---------------LSAKWAPIAAEAGV-VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCCch---------------HHHHHHHHHHHcCC-EEEEcCCcc
Confidence 9999887542 14456777778897 688888774
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0076 Score=61.66 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++|.|.||||++|..|++.|.++++ .++..+.. .|+.. .... +. +.....-|+.. +.++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as------~~saG--~~~~-~~--~~~~~~~~~~~-----~~~~~~ 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS------ARSAG--KSLK-FK--DQDITIEETTE-----TAFEGV 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC------TTTTT--CEEE-ET--TEEEEEEECCT-----TTTTTC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc------cccCC--Ccce-ec--CCCceEeeCCH-----HHhcCC
Confidence 47999999999999999999998753 23444221 11111 1000 11 12222223321 125789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||-+++.. .+...+..+.+.|+ ++|=.|+..
T Consensus 66 Dvvf~a~~~~---------------~s~~~a~~~~~~G~-~vIDlSa~~ 98 (366)
T 3pwk_A 66 DIALFSAGSS---------------TSAKYAPYAVKAGV-VVVDNTSYF 98 (366)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCChH---------------hHHHHHHHHHHCCC-EEEEcCCcc
Confidence 9999987542 14456666777887 688888764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.001 Score=61.95 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH---HHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~---~l~~~l~ 83 (586)
.+++|+||||+|-+|..+++.+...|. +|++.|+... +......+ +... ..|..+.+ .+.+...
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~--------~~~~~~~~---g~~~-~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDA--------KREMLSRL---GVEY-VGDSRSVDFADEILELTD 104 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHH--------HHHHHHTT---CCSE-EEETTCSTHHHHHHHHTT
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHH--------HHHHHHHc---CCCE-EeeCCcHHHHHHHHHHhC
Confidence 468999999999999999999999994 8988655431 10000001 1121 24665543 3333332
Q ss_pred --CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
++|+||++++.. .....++.++..| +++.+++..
T Consensus 105 ~~~~D~vi~~~g~~---------------~~~~~~~~l~~~G--~~v~~g~~~ 140 (198)
T 1pqw_A 105 GYGVDVVLNSLAGE---------------AIQRGVQILAPGG--RFIELGKKD 140 (198)
T ss_dssp TCCEEEEEECCCTH---------------HHHHHHHTEEEEE--EEEECSCGG
T ss_pred CCCCeEEEECCchH---------------HHHHHHHHhccCC--EEEEEcCCC
Confidence 589999998631 1223444444444 888888764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.009 Score=59.86 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=74.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-CC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEc-cCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-GK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV-DVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~-Dl~d~~~l~~~l~~~ 85 (586)
|||.|+||+|++|..++..|... +. .+++++|+... ... ..-.+.+. ......... .-.+ .+.++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~--~~G--~a~Dl~~~--~~~~~v~~~~~~~~----~~~~~~a 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPG--VAVDLSHI--PTAVKIKGFSGEDA----TPALEGA 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT--HHH--HHHHHHTS--CSSEEEEEECSSCC----HHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC--chh--HHHHhhCC--CCCceEEEecCCCc----HHHhCCC
Confidence 68999999999999999998875 42 47999887541 000 00001111 112222211 1112 4578899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+||.. .+..+.....+.|+.-.+.+.+++.+++.+ .++.+|
T Consensus 71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9999999976 344456788899999999999999887543 455554
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0028 Score=64.83 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec-CCcccccCCCCCCCCCCCC----CC--CCCeEEEEccCCCHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD-STQSLQLDPSESNSLLPDS----LS--SGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d-~~~~~~l~r~~~~~~~~~~----l~--~~~~~~~~~Dl~d~~~l~ 79 (586)
+++||.|.||+|++|+.+++.|.+++..+++++. ..+. ....-+ ...... +. .....+ .|+ |++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~--~~~-d~~--- 73 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSK--IGKKYK-DAVKWIEQGDIPEEVQDLPI--VST-NYE--- 73 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGG--TTSBHH-HHCCCCSSSSCCHHHHTCBE--ECS-SGG---
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhh--cCCCHH-HhcCcccccccccCCceeEE--eeC-CHH---
Confidence 3579999999999999999999988766777742 2110 000000 000000 00 001112 233 332
Q ss_pred HHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 80 KVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 80 ~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
.++++|+||-+.+.. .+..++..+.++|++ +|-.|+..
T Consensus 74 -~~~~vDvVf~atp~~---------------~s~~~a~~~~~aG~~-VId~s~~~ 111 (350)
T 2ep5_A 74 -DHKDVDVVLSALPNE---------------LAESIELELVKNGKI-VVSNASPF 111 (350)
T ss_dssp -GGTTCSEEEECCCHH---------------HHHHHHHHHHHTTCE-EEECSSTT
T ss_pred -HhcCCCEEEECCChH---------------HHHHHHHHHHHCCCE-EEECCccc
Confidence 246899999765431 245577788888974 77777653
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0097 Score=58.65 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCC--C-CCCCCC--CCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESN--S-LLPDSL--SSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~--~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
+++||.|.|++|-+|+.+++.+.+....++.+. ++|.+.. + ...+.. ...++.. .++++++
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~-------vd~~~~~~~G~d~gel~G~~~~gv~v-------~~dl~~l 85 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAV-------LVRKGSSFVDKDASILIGSDFLGVRI-------TDDPESA 85 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEE-------BCCTTCTTTTSBGGGGTTCSCCSCBC-------BSCHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------EecCCccccccchHHhhccCcCCcee-------eCCHHHH
Confidence 356999999999999999999998754566553 2332210 0 000110 0112211 1234566
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
+.++|+||.+..+ ..+...++.|.++|+ .+|
T Consensus 86 l~~aDVvIDFT~p---------------~a~~~~~~~~l~~Gv-~vV 116 (288)
T 3ijp_A 86 FSNTEGILDFSQP---------------QASVLYANYAAQKSL-IHI 116 (288)
T ss_dssp TTSCSEEEECSCH---------------HHHHHHHHHHHHHTC-EEE
T ss_pred hcCCCEEEEcCCH---------------HHHHHHHHHHHHcCC-CEE
Confidence 7789999998632 223445667777787 444
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0058 Score=62.49 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--------CC--CCCeEEEEccCCCHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--------LS--SGRAEYHQVDVRDIS 76 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--------l~--~~~~~~~~~Dl~d~~ 76 (586)
++++|.|.|||||+|..|++.|.++...++..+...+ +.. ...... +. ..+..+... +.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~------saG-k~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~ 75 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKG------SVG-KPYGEVVRWQTVGQVPKEIADMEIKPT---DPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEEST------TTT-SBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECch------hcC-CChhHhcccccccccccccccceEEeC---CHH
Confidence 3569999999999999999988887766777642211 110 001000 00 001111111 222
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
.++++|+||-+.+... +..++..+.+.|+ ++|=.|+..-
T Consensus 76 ----~~~~vDvvf~a~p~~~---------------s~~~a~~~~~~G~-~vIDlSa~~R 114 (359)
T 4dpl_A 76 ----LMDDVDIIFSPLPQGA---------------AGPVEEQFAKEGF-PVISNSPDHR 114 (359)
T ss_dssp ----GCTTCCEEEECCCTTT---------------HHHHHHHHHHTTC-EEEECSSTTT
T ss_pred ----HhcCCCEEEECCChHH---------------HHHHHHHHHHCCC-EEEEcCCCcc
Confidence 3478999999876531 2345566667887 6788887743
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0058 Score=62.49 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--------CC--CCCeEEEEccCCCHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--------LS--SGRAEYHQVDVRDIS 76 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--------l~--~~~~~~~~~Dl~d~~ 76 (586)
++++|.|.|||||+|..|++.|.++...++..+...+ +.. ...... +. ..+..+... +.+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~------saG-k~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~ 75 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKG------SVG-KPYGEVVRWQTVGQVPKEIADMEIKPT---DPK 75 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEEST------TTT-SBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECch------hcC-CChhHhcccccccccccccccceEEeC---CHH
Confidence 3569999999999999999988887766777642211 110 001000 00 001111111 222
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 77 QIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 77 ~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
.++++|+||-+.+... +..++..+.+.|+ ++|=.|+..-
T Consensus 76 ----~~~~vDvvf~a~p~~~---------------s~~~a~~~~~~G~-~vIDlSa~~R 114 (359)
T 4dpk_A 76 ----LMDDVDIIFSPLPQGA---------------AGPVEEQFAKEGF-PVISNSPDHR 114 (359)
T ss_dssp ----GCTTCCEEEECCCTTT---------------HHHHHHHHHHTTC-EEEECSSTTT
T ss_pred ----HhcCCCEEEECCChHH---------------HHHHHHHHHHCCC-EEEEcCCCcc
Confidence 3478999999876531 2345566667887 6888887743
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0073 Score=61.19 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|||.|+|| |.+|..++..|...|+.+|.++|+.... +..... .+.+ .+ ...++.. ..| +.++++
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~-~~~~~~--~l~~~~~~~~~~~~i~~-t~d------~~ea~~ 77 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGM-PEGKAL--DLSHVTSVVDTNVSVRA-EYS------YEAALT 77 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH-HHHHHH--HHHHHHHHTTCCCCEEE-ECS------HHHHHT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhH-HHHHHH--HHHhhhhccCCCCEEEE-eCC------HHHHhC
Confidence 479999998 9999999999999996469998776421 000000 0000 00 1112221 122 344789
Q ss_pred CCCEEEEcccCCC-CCC-----ChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 84 GASTVFYVDATDL-NTD-----DFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~-----~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
++|+||-.++... ... ........|..-.+.+.+.+.+..-+-++
T Consensus 78 ~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~v 128 (331)
T 1pzg_A 78 GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFI 128 (331)
T ss_dssp TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 9999999997652 222 33455777888888898888877544333
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.012 Score=59.33 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|.++||.|+|+ |.+|..++..|...|..+|.++|+.... .... ...+.+. ....+......+ | .++++
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~--~~g~-a~dL~~~~~~~~~~~~v~~t~--d----~~a~~ 72 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGM--PNGK-ALDLLQTCPIEGVDFKVRGTN--D----YKDLE 72 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH--HHHH-HHHHHTTHHHHTCCCCEEEES--C----GGGGT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHH--HHHH-HHHHHhhhhhcCCCcEEEEcC--C----HHHHC
Confidence 44689999995 9999999999999883389998876421 0000 0001110 000122222111 2 24788
Q ss_pred CCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
++|+||.+++.. .+..........|+.-.+.+++.+.+.+.. .++.+|
T Consensus 73 ~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 73 NSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 999999999876 233345667888999999999999887643 555554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0057 Score=63.91 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=66.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D 86 (586)
.++|+|+|. |.+|+.+++.|.+.|+ .|+++|.+... . +.+...++..+.+|..+++.+.++ ++++|
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~-~vvvId~d~~~--v---------~~~~~~g~~vi~GDat~~~~L~~agi~~A~ 70 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV-KMVVLDHDPDH--I---------ETLRKFGMKVFYGDATRMDLLESAGAAKAE 70 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCHHH--H---------HHHHHTTCCCEESCTTCHHHHHHTTTTTCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCHHH--H---------HHHHhCCCeEEEcCCCCHHHHHhcCCCccC
Confidence 578999986 9999999999999995 89997765421 0 011123577899999999999887 78899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I 128 (586)
+||-+... . +. ...++..+++.+.+ ++|
T Consensus 71 ~viv~~~~------~----~~----n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 71 VLINAIDD------P----QT----NLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp EEEECCSS------H----HH----HHHHHHHHHHHCTTCEEE
T ss_pred EEEECCCC------h----HH----HHHHHHHHHHhCCCCeEE
Confidence 99986532 1 22 33456667766654 444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0026 Score=65.54 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++|+|+|+ |-+|..+++.|...|. +|+++|+... +... ..+.+ +.. +.+|..+.+.+.+.+.++|
T Consensus 165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~----~~~~---~~~~~---g~~-~~~~~~~~~~l~~~~~~~D 231 (369)
T 2eez_A 165 APASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHK----RLQY---LDDVF---GGR-VITLTATEANIKKSVQHAD 231 (369)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH----HHHH---HHHHT---TTS-EEEEECCHHHHHHHHHHCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHH----HHHH---HHHhc---Cce-EEEecCCHHHHHHHHhCCC
Confidence 4689999999 9999999999999995 9999766431 0000 00001 111 4567778888999999999
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
+||++++..
T Consensus 232 vVi~~~g~~ 240 (369)
T 2eez_A 232 LLIGAVLVP 240 (369)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 999998864
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.035 Score=56.77 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=56.1
Q ss_pred CeEEEEcCCCchHHHHHH-HHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVL-RLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~-~L~~~g--~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|.|||||+|+.|++ .|.++. ..++..+. .|+ ....... +.... ...-|..+.+. ++++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~s-------s~~-aG~~~~~-~~~~~--~~~~~~~~~~~----~~~~ 65 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS-------TSQ-IGVPAPN-FGKDA--GMLHDAFDIES----LKQL 65 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE-------SSS-TTSBCCC-SSSCC--CBCEETTCHHH----HTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEe-------ccc-cCcCHHH-hCCCc--eEEEecCChhH----hccC
Confidence 589999999999999999 666665 23566532 222 1111111 11111 11224444432 5799
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~ 133 (586)
|+||-+.+.. .+...+..+.+.|++ ++|=.||.
T Consensus 66 Dvvf~a~~~~---------------~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 66 DAVITCQGGS---------------YTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred CEEEECCChH---------------HHHHHHHHHHHCCCCEEEEeCCch
Confidence 9999987542 134566666778874 67766654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0094 Score=59.81 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+++|.|+|+ |.+|..++..|...|+.+|+++|+.+.....+... ..+.+. +..........+ | .+.+++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a-~dl~~~~~~~~~~~~i~~t~--d----~~a~~~ 78 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKA-LDMLEASPVQGFDANIIGTS--D----YADTAD 78 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH-HHHHHHHHHHTCCCCEEEES--C----GGGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhh-hhHHHhhhhccCCCEEEEcC--C----HHHhCC
Confidence 3579999996 99999999999999843899988762000000000 000000 000111222111 2 246789
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+||-++|.. .+........+.|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 79 aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 79 SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 99999999976 234445778899999999999999887643 555555
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0079 Score=60.34 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=70.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|+ |.+|+.++..|+..|. .+|.++|+.... .... ...+.+. ....+......| + .++++++
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k--~~g~-a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a 70 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGM--PQGK-ALDMRESSPIHGFDTRVTGTN--D----YGPTEDS 70 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTH--HHHH-HHHHHHHHHHHTCCCEEEEES--S----SGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHH--HHHH-HHHHhccccccCCCcEEEECC--C----HHHhCCC
Confidence 68999996 9999999999998873 289998775421 0000 0000000 001122332222 2 3468899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+||.. .+..+.....+.|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 71 DvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp SEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 9999999976 233345677889999999999999888643 455444
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.039 Score=56.54 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=57.0
Q ss_pred CCeEEEEcCCCchHHHHHH-HHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVL-RLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~-~L~~~g--~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++|.|.|||||+|..|++ .|.++. ..++..+.. ++ .+.....+.... ...-|..+.+. +++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss-------~~--aG~~~~~~~~~~--~~v~~~~~~~~----~~~ 68 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFST-------SN--AGGKAPSFAKNE--TTLKDATSIDD----LKK 68 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES-------SC--TTSBCCTTCCSC--CBCEETTCHHH----HHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEec-------hh--cCCCHHHcCCCc--eEEEeCCChhH----hcC
Confidence 5799999999999999999 666665 235555322 21 111101111111 12224444443 468
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~ 133 (586)
+|+||-+.+.. .+...+..+.+.|++ ++|=.||.
T Consensus 69 vDvvf~a~~~~---------------~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 69 CDVIITCQGGD---------------YTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp CSEEEECSCHH---------------HHHHHHHHHHHTTCCSEEEECSST
T ss_pred CCEEEECCChH---------------HHHHHHHHHHHCCCCEEEEeCCcc
Confidence 99999987542 134566667778884 67766664
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.028 Score=57.63 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCchHHHHHHH-HHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLR-LLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~-L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|++|.|.||+|++|+.++++ |.++++ ..++.+.. ++ .+.....+. +......|..|++. +++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~-------~s--~G~~v~~~~--g~~i~~~~~~~~~~----~~~ 65 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFST-------SQ--LGQAAPSFG--GTTGTLQDAFDLEA----LKA 65 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES-------SS--TTSBCCGGG--TCCCBCEETTCHHH----HHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEe-------CC--CCCCccccC--CCceEEEecCChHH----hcC
Confidence 47999999999999999995 444442 24555222 11 111100011 11223334545544 468
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~ 133 (586)
+|+||-+.+. ..+...+..+.++|++ .+|=.||.
T Consensus 66 ~DvVf~a~g~---------------~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 66 LDIIVTCQGG---------------DYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCEEEECCCc---------------hhHHHHHHHHHHCCCCEEEEcCChh
Confidence 9999998763 2245567777888985 45555544
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=58.24 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=74.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|| |.||+.++-.|..++. .++.++|+.... ..... -.+.+. ...........+ |. +.++++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~--~~G~a-~DL~h~~~~~~~~~~i~~~~--d~----~~~~~a 70 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL--AVGEA-MDLAHAAAGIDKYPKIVGGA--DY----SLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH--HHHHH-HHHHHHHGGGTCCCEEEEES--CG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCc--chhhh-hhhhcccccCCCCCeEecCC--CH----HHhCCC
Confidence 78999995 9999999999888764 479998876421 00000 000000 001122222221 22 357899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr-~I~~S 131 (586)
|+||-.||.. .+........+.|..-.+.+.+++.+++.+- ++.+|
T Consensus 71 DvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs 118 (294)
T 2x0j_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 9999999987 3555678889999999999999999887543 44444
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.016 Score=58.47 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=73.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+.+||.|+|| |.+|..++..|+..+. .++.++|+.... +... ...+.+ .+. .++.... | + .++
T Consensus 6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~-~~g~--~~dl~~~~~~~-~~~~i~~-~--~----~~a 73 (326)
T 2zqz_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK-TKGD--AIDLSNALPFT-SPKKIYS-A--E----YSD 73 (326)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH-HHHH--HHHHHTTGGGS-CCCEEEE-C--C----GGG
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH-hHHH--HHHHHHHHHhc-CCeEEEE-C--C----HHH
Confidence 455689999998 9999999999988773 379998886421 0000 000000 011 2333332 2 2 345
Q ss_pred hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
++++|+||..++... +..........|+...+.+.+.+.+.+.. .++.+|
T Consensus 74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 889999999998762 23334567788999999999988887543 455544
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0064 Score=61.18 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
++++||.|+|+ |.+|..++..|...|. .+|+++|+.... .+... ..+.+. ....+..... | + .+++
T Consensus 4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~--~~~~~-~dl~~~~~~~~~~~~i~~-~--~----~~al 72 (316)
T 1ldn_A 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK--AIGDA-MDFNHGKVFAPKPVDIWH-G--D----YDDC 72 (316)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHTTSSSSCCEEEE-C--C----GGGT
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcch--HHHHH-hhHHHHhhhcCCCeEEEc-C--c----HHHh
Confidence 34689999998 9999999999988762 379998886521 11000 000000 1111344432 2 2 2458
Q ss_pred cCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEe
Q 007866 83 EGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYN 130 (586)
Q Consensus 83 ~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~ 130 (586)
+++|+||-+++... ...........|..-.+.+++.+.+.... .++.+
T Consensus 73 ~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~ 122 (316)
T 1ldn_A 73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (316)
T ss_dssp TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEe
Confidence 89999999998762 22223455678888888899888876543 34433
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0083 Score=60.83 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D 86 (586)
.++|+|.|+ |.+|+.+++.|.+.| . |+++|.++ +.. + +...++..+.+|..|++.+.++ ++++|
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~--------~~~---~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~ 179 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDEN--------VRK---K-VLRSGANFVHGDPTRVSDLEKANVRGAR 179 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGG--------GHH---H-HHHTTCEEEESCTTSHHHHHHTCSTTEE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCCh--------hhh---h-HHhCCcEEEEeCCCCHHHHHhcChhhcc
Confidence 358999986 999999999999999 4 88855543 211 1 2234689999999999999887 78899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEE
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLV 128 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I 128 (586)
.|+-+.+. + +.|+ .+...+++.+.+ +++
T Consensus 180 ~vi~~~~~-----d-----~~n~----~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 180 AVIVDLES-----D-----SETI----HCILGIRKIDESVRII 208 (336)
T ss_dssp EEEECCSS-----H-----HHHH----HHHHHHHTTCTTSEEE
T ss_pred EEEEcCCc-----c-----HHHH----HHHHHHHHHCCCCeEE
Confidence 99976532 1 2333 345567777765 444
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.024 Score=57.39 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC--CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG--KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g--~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++|.|.||||++|..|++.|.++. ..+++.+... + +.+.... +. +.+...-|+.+ +.++++
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~------~--~aG~~~~-~~--~~~~~~~~~~~-----~~~~~~ 64 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASA------R--SQGRKLA-FR--GQEIEVEDAET-----ADPSGL 64 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT------T--TSSCEEE-ET--TEEEEEEETTT-----SCCTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECc------c--cCCCcee-ec--CCceEEEeCCH-----HHhccC
Confidence 3689999999999999999999884 2345553221 1 1111111 11 12222223322 235789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||.+.+.. .++..+..+.+.|+ ++|=.|+..
T Consensus 65 Dvvf~a~~~~---------------~s~~~a~~~~~~G~-~vID~Sa~~ 97 (344)
T 3tz6_A 65 DIALFSAGSA---------------MSKVQAPRFAAAGV-TVIDNSSAW 97 (344)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTC-EEEECSSTT
T ss_pred CEEEECCChH---------------HHHHHHHHHHhCCC-EEEECCCcc
Confidence 9999987542 23456666777887 688888764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.021 Score=58.61 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCC---CCCCC-------CCeEEEEccCCCH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP---DSLSS-------GRAEYHQVDVRDI 75 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~---~~l~~-------~~~~~~~~Dl~d~ 75 (586)
|++++|.|.||||++|..+++.|.++...++..+.-. .|+..+ ... ..+.. .+..+...|-.
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS-----~~saGk-~~~~~~~~~~~~~~p~~~~~~~v~~~~~~-- 88 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGAS-----SRSAGK-KYKDAASWKQTETLPETEQDIVVQECKPE-- 88 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEEC-----TTTTTS-BHHHHCCCCCSSCCCHHHHTCBCEESSSC--
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeecc-----ccccCC-CHHHhcccccccccccccccceEEeCchh--
Confidence 4557899999999999999999998876667542100 111110 110 00000 11222222211
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 76 SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 76 ~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
+ .++++|+||-+.+.. .+..++..+.+.|+ ++|=.|+..-
T Consensus 89 ~----~~~~~Dvvf~alp~~---------------~s~~~~~~~~~~G~-~VIDlSa~fR 128 (381)
T 3hsk_A 89 G----NFLECDVVFSGLDAD---------------VAGDIEKSFVEAGL-AVVSNAKNYR 128 (381)
T ss_dssp T----TGGGCSEEEECCCHH---------------HHHHHHHHHHHTTC-EEEECCSTTT
T ss_pred h----hcccCCEEEECCChh---------------HHHHHHHHHHhCCC-EEEEcCCccc
Confidence 0 257899999886542 13456666777887 5887887644
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0082 Score=59.65 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=73.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|+ |.+|..++..|...|+. +|.++|+.... ..... -.+.+.. .......... .| .++++++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~--~~g~~-~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a 70 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL--AVGEA-MDLAHAAAGIDKYPKIVGG--AD----YSLLKGS 70 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH--HHHHH-HHHHHHHHTTTCCCEEEEE--SC----GGGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHH--HHHHH-HHHHhhhhhcCCCCEEEEe--CC----HHHhCCC
Confidence 68999999 99999999999998843 79998876531 00000 0000000 0112233222 12 3478899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||.+++.. .+..+.....+.|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 71 DiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999999976 233445677889999999999999988643 455544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0049 Score=62.84 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH----HHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS----QIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~----~l~~~l 82 (586)
.+++|+|+||+|-+|..+++.+...|. +|++.|+.. ++......+ +.. ...|+.+.+ .+.+..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~--------~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGE--------GKEELFRSI---GGE-VFIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECST--------THHHHHHHT---TCC-EEEETTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCH--------HHHHHHHHc---CCc-eEEecCccHhHHHHHHHHh
Confidence 468999999999999999999999995 898855432 211111111 122 223665322 233333
Q ss_pred c-CCCEEEEcccC
Q 007866 83 E-GASTVFYVDAT 94 (586)
Q Consensus 83 ~-~~D~Vih~aa~ 94 (586)
. ++|+||++++.
T Consensus 236 ~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 236 DGGAHGVINVSVS 248 (347)
T ss_dssp TSCEEEEEECSSC
T ss_pred CCCCCEEEECCCc
Confidence 2 68999999874
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.018 Score=60.54 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc---EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC--CCHHH-HHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC---IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQ-IKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~---~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl--~d~~~-l~~ 80 (586)
-.++|+|.| .|-||+.+++.|.+++.+ .|++.|.... .+ .. ....++++...++ .|.++ +.+
T Consensus 12 ~~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~---~~-----~~---~~~~g~~~~~~~Vdadnv~~~l~a 79 (480)
T 2ph5_A 12 FKNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGT---KV-----DV---AQQYGVSFKLQQITPQNYLEVIGS 79 (480)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCC---SC-----CH---HHHHTCEEEECCCCTTTHHHHTGG
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchh---hh-----hH---HhhcCCceeEEeccchhHHHHHHH
Confidence 357899998 899999999999997644 5777654321 11 00 0111345555555 44544 556
Q ss_pred HhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
++++.|+|||++-.. . ...++++|.++|+ -|++++.
T Consensus 80 Ll~~~DvVIN~s~~~---~------------~l~Im~acleaGv---~YlDTa~ 115 (480)
T 2ph5_A 80 TLEENDFLIDVSIGI---S------------SLALIILCNQKGA---LYINAAT 115 (480)
T ss_dssp GCCTTCEEEECCSSS---C------------HHHHHHHHHHHTC---EEEESSC
T ss_pred HhcCCCEEEECCccc---c------------CHHHHHHHHHcCC---CEEECCC
Confidence 787779999966332 1 3458999999997 4556553
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.026 Score=54.57 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~D 71 (586)
.++|+|.|+ |-+|+++++.|.+.|.-+++++|.+. ..++.|+.-. .... .....-.++.+..+
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 478999975 88999999999999965899988765 2233333210 0000 00011134455555
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+. .+.+.+.++++|+||.+... ++ .-..+.++|++.|+ .+|+.+....+
T Consensus 110 ~~-~~~~~~~~~~~DvVi~~~d~------~~--------~~~~l~~~~~~~~~-p~i~~~~~g~~ 158 (249)
T 1jw9_B 110 LD-DAELAALIAEHDLVLDCTDN------VA--------VRNQLNAGCFAAKV-PLVSGAAIRME 158 (249)
T ss_dssp CC-HHHHHHHHHTSSEEEECCSS------HH--------HHHHHHHHHHHHTC-CEEEEEEEBTE
T ss_pred CC-HhHHHHHHhCCCEEEEeCCC------HH--------HHHHHHHHHHHcCC-CEEEeeeccce
Confidence 64 45667788999999997532 22 12345667777776 47776555443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.017 Score=58.12 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEE-EccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~-~~Dl~d~~~l~~~l 82 (586)
|.++||.|+|+ |.+|..++..|...|+.+|.++|+.... ..... ..+.+. +...+.... ..| . +++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~--~~g~~-~dl~~~~~~~~~~~~v~~t~d---~----~a~ 73 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGT--PQGKG-LDIAESSPVDGFDAKFTGAND---Y----AAI 73 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH--HHHHH-HHHHHHHHHHTCCCCEEEESS---G----GGG
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchh--HHHHH-HHHhchhhhcCCCCEEEEeCC---H----HHH
Confidence 45689999998 9999999999999984389998776421 00000 000000 000112222 223 1 478
Q ss_pred cCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 83 EGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 83 ~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+++|+||.+++... +..........|+.-.+.+++.+.+.+.. .++.+|
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 89999999998752 22234456788999999999998887643 555555
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.018 Score=58.05 Aligned_cols=113 Identities=8% Similarity=0.009 Sum_probs=68.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEE-ccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQ-VDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~-~Dl~d~~~l~~~l~~ 84 (586)
++||.|+|| |++|..++..|...|+..|.++|+.... +... . ..+.+.+ .....+... .|+ +++++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~-l~~~-~-~~l~~~~~~~~~~~~i~~t~d~-------~al~~ 72 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNM-PHGK-A-LDTSHTNVMAYSNCKVSGSNTY-------DDLAG 72 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH-HHHH-H-HHHHTHHHHHTCCCCEEEECCG-------GGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHH-HHHH-H-HHHHhhhhhcCCCcEEEECCCH-------HHhCC
Confidence 579999998 9999999999999996469998876421 0000 0 0000000 001112221 232 45889
Q ss_pred CCEEEEcccCCC-CCCC-----hhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATDL-NTDD-----FYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~-----~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+||-+++... .... .......|+.-.+.+.+.+.+...+ .+|.+|
T Consensus 73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 999999997652 1111 3455677877788888877776433 444444
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0077 Score=60.84 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..++||.|+|+ |.+|..++..|+.+|. .+++++|+.... ..... ..+.+. +. .....+..+ |. +.+
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~--~~g~a-~DL~~~~~~~-~~~~i~~~~--d~----~~~ 85 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDK--LKGEM-MDLQHGSLFL-KTPKIVSSK--DY----SVT 85 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHH-HHHHHTGGGC-SCCEEEECS--SG----GGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHH--HHHHH-Hhhhhhhhcc-CCCeEEEcC--CH----HHh
Confidence 45689999997 9999999999999884 379998875421 00000 000000 11 112222221 22 258
Q ss_pred cCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+++|+||.+||.. .+........+.|+.-.+.+.+.+.+++.. .++.+|
T Consensus 86 ~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 86 ANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp TTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8999999999976 234445678899999999999999887543 555555
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.035 Score=53.44 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-CCcEEEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-GKCIVRV 38 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~ 38 (586)
|||.|.|++|-+|+.+++.+.+. ++ ++.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~-elva 30 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDL-TLSA 30 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTC-EEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCC-EEEE
Confidence 58999999999999999999876 64 7664
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0043 Score=62.82 Aligned_cols=35 Identities=20% Similarity=0.011 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++|+||||+|-+|..+++.+...|. +|++.|+.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~ 179 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGS 179 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 468999999999999999999999995 89986553
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=57.28 Aligned_cols=112 Identities=11% Similarity=0.090 Sum_probs=68.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.+||.|+|| |.+|..++..|+..+. .++.++|+.... +... ...+.+ .+. .++.... | + .+++++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~-~~g~--~~dl~~~~~~~-~~~~v~~-~--~----~~a~~~ 72 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR-TKGD--ALDLEDAQAFT-APKKIYS-G--E----YSDCKD 72 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHH--HHHHHGGGGGS-CCCEEEE-C--C----GGGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH-HHHH--HHHHHHHHHhc-CCeEEEE-C--C----HHHhCC
Confidence 479999998 9999999999998773 379998886421 0000 000000 011 2333332 3 2 346899
Q ss_pred CCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+||..++... +..........|+...+.+.+.+.+.+.. .++.+|
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 999999998762 22223456788999999999999888643 455443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=57.18 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~-~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l--- 82 (586)
.||||.|+|+ |.+|+.+++.+.++++ ++.+ +|+....... -+....+...+ +.. +..|+..++.+.+.+
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~~~~g-v~v~~dl~~l~---~~D-VvIDft~p~a~~~~~~l~ 74 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPKATTP-YQQYQHIADVK---GAD-VAIDFSNPNLLFPLLDED 74 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC--CC-SCBCSCTTTCT---TCS-EEEECSCHHHHHHHHTSC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCccccCC-CceeCCHHHHh---CCC-EEEEeCChHHHHHHHHHh
Confidence 3689999999 9999999999999987 7665 5544310000 00000111111 222 234667766655444
Q ss_pred cCCCEEEEcccC
Q 007866 83 EGASTVFYVDAT 94 (586)
Q Consensus 83 ~~~D~Vih~aa~ 94 (586)
.|..+|+...|.
T Consensus 75 ~g~~vVigTTG~ 86 (243)
T 3qy9_A 75 FHLPLVVATTGE 86 (243)
T ss_dssp CCCCEEECCCSS
T ss_pred cCCceEeCCCCC
Confidence 246677765544
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.028 Score=55.97 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCCe-EEEE-cCC-----------------CchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRT-CVVL-NGR-----------------GFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~-IlVT-Gat-----------------G~IG~~lv~~L~~~g~~~V~~~ 39 (586)
.+++ |||| ||| |-.|..++++++++| +.|+.+
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~G-a~V~lv 85 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAG-YGVLFL 85 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTT-CEEEEE
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 3566 9999 667 999999999999999 588873
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.024 Score=56.65 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=64.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccC--CCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLD--PSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~--r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|| |.+|..++..|...|+. +|.++|+.....-. ..-.+. . ... ........ |. ++++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~-~-~~~--~~~~i~~~---~~----~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA-A-PVS--HGTRVWHG---GH----SELADA 68 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTS-C-CTT--SCCEEEEE---CG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhh-h-hhc--CCeEEEEC---CH----HHhCCC
Confidence 58999998 99999999999999832 79998886531000 000000 0 011 12333222 22 358899
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+++... +..........|....+.+++.+.+.+.. .++.+|
T Consensus 69 DvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 69 QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp SEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 99999997641 22223345678888888898888776543 344443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.09 Score=50.82 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=69.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCC----C----C--CCCC--eEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPD----S----L--SSGR--AEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~~----~----l--~~~~--~~~~~~D 71 (586)
..+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|+.- ...... . + ..+. ++.+..+
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 106 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 579999987 55999999999999976899988764 223444320 000000 0 0 0122 3444444
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
+ +.+.+.+.++++|+||.+... +. .-..+.++|.+.++ .+|+.+....+|
T Consensus 107 ~-~~~~~~~~~~~~DvVi~~~d~------~~--------~r~~l~~~~~~~~~-p~i~~~~~g~~G 156 (251)
T 1zud_1 107 L-TGEALKDAVARADVVLDCTDN------MA--------TRQEINAACVALNT-PLITASAVGFGG 156 (251)
T ss_dssp C-CHHHHHHHHHHCSEEEECCSS------HH--------HHHHHHHHHHHTTC-CEEEEEEEBTEE
T ss_pred C-CHHHHHHHHhcCCEEEECCCC------HH--------HHHHHHHHHHHhCC-CEEEEeccccce
Confidence 4 346677888899999997532 21 12345667888876 478777655443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0074 Score=61.65 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
.+++|+|+||+|-+|..+++.+...|. +|++.+... ++......+ +.. ...|..+. +.+.+...
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---ga~-~~~d~~~~~~~~~~~~~~~ 236 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTE--------EGQKIVLQN---GAH-EVFNHREVNYIDKIKKYVG 236 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHT---TCS-EEEETTSTTHHHHHHHHHC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCh--------hHHHHHHHc---CCC-EEEeCCCchHHHHHHHHcC
Confidence 468999999999999999999999994 899855432 211111111 111 12355543 33444443
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||+++|.
T Consensus 237 ~~~~D~vi~~~G~ 249 (351)
T 1yb5_A 237 EKGIDIIIEMLAN 249 (351)
T ss_dssp TTCEEEEEESCHH
T ss_pred CCCcEEEEECCCh
Confidence 68999999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0062 Score=64.67 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~ 85 (586)
+.|+|+|.|+ |-+|+++++.|.+.|| .|++.|.++.. .+ ......++..+.||-.+++.|.++ ++++
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~-~v~vId~d~~~--~~--------~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a 69 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENN-DITIVDKDGDR--LR--------ELQDKYDLRVVNGHASHPDVLHEAGAQDA 69 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTE-EEEEEESCHHH--HH--------HHHHHSSCEEEESCTTCHHHHHHHTTTTC
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCC-CEEEEECCHHH--HH--------HHHHhcCcEEEEEcCCCHHHHHhcCCCcC
Confidence 4689999976 9999999999999995 99997765421 11 000112578999999999999876 5789
Q ss_pred CEEEEcc
Q 007866 86 STVFYVD 92 (586)
Q Consensus 86 D~Vih~a 92 (586)
|.+|-+.
T Consensus 70 d~~ia~t 76 (461)
T 4g65_A 70 DMLVAVT 76 (461)
T ss_dssp SEEEECC
T ss_pred CEEEEEc
Confidence 9998543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.022 Score=58.29 Aligned_cols=122 Identities=12% Similarity=-0.030 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc----EEEEecCCcccccCCCC-CCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC----IVRVTDSTQSLQLDPSE-SNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~----~V~~~d~~~~~~l~r~~-~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.++||.|+||+|.||++++-.|...+.. .+.+.|.....+..... ..-.+.+... +-...+.. .+. -.+.
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~-p~~~~v~i--~~~--~y~~ 105 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSI--GID--PYEV 105 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEE--ESC--HHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhh-hhcCCcEE--ecC--CHHH
Confidence 3579999999999999999999887632 25554432110000000 0000111100 01111111 111 2567
Q ss_pred hcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhC-CC-CEEEEecCc
Q 007866 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACREC-KV-RRLVYNSTA 133 (586)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~-gv-kr~I~~SS~ 133 (586)
++++|+||-+||.. .+..+.....+.|+.-.+.+.+++.+. +- ..++.+|-.
T Consensus 106 ~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP 160 (375)
T 7mdh_A 106 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 160 (375)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 89999999999976 344556788999999999999988874 42 356666643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0054 Score=61.95 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHH---HHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDIS---QIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~---~l~~~l~ 83 (586)
.+++|+|+||+|-+|..+++.+...|. +|++.|+.. ++......+ +.. ...|..+.+ .+.+...
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~--------~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTA--------QKAQSALKA---GAW-QVINYREEDLVERLKEITG 206 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH--------HHHHHHHHc---CCC-EEEECCCccHHHHHHHHhC
Confidence 468999999999999999999999995 999855432 110000001 111 123555433 3334332
Q ss_pred --CCCEEEEccc
Q 007866 84 --GASTVFYVDA 93 (586)
Q Consensus 84 --~~D~Vih~aa 93 (586)
++|+||+++|
T Consensus 207 ~~~~D~vi~~~g 218 (327)
T 1qor_A 207 GKKVRVVYDSVG 218 (327)
T ss_dssp TCCEEEEEECSC
T ss_pred CCCceEEEECCc
Confidence 5899999997
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.018 Score=57.61 Aligned_cols=83 Identities=10% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCC-CCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLS-SGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+++++|+|+ |-+|+.++..|.+.|..+|+++++..+ ..++. .+...+. ..+......++.+.+++.+.+.
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~-----~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~ 225 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDD-----FYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIA 225 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSST-----THHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCc-----hHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhc
Confidence 35789999997 899999999999999548888444310 01100 0000000 0123344557777777777888
Q ss_pred CCCEEEEcccC
Q 007866 84 GASTVFYVDAT 94 (586)
Q Consensus 84 ~~D~Vih~aa~ 94 (586)
++|+||++...
T Consensus 226 ~aDiIINaTp~ 236 (315)
T 3tnl_A 226 ESVIFTNATGV 236 (315)
T ss_dssp TCSEEEECSST
T ss_pred CCCEEEECccC
Confidence 88888887754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0065 Score=61.54 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
.+++|+|+||+|-+|..+++.+...|. +|++.|+.. ++......+ +.. ...|..+. +.+.+...
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~--------~~~~~~~~~---g~~-~~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTE--------EKAETARKL---GCH-HTINYSTQDFAEVVREITG 211 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCC-EEEECCCHHHHHHHHHHhC
Confidence 468999999999999999999999995 899965543 110000011 111 12355443 33444442
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||+++|.
T Consensus 212 ~~~~d~vi~~~g~ 224 (333)
T 1wly_A 212 GKGVDVVYDSIGK 224 (333)
T ss_dssp TCCEEEEEECSCT
T ss_pred CCCCeEEEECCcH
Confidence 58999999975
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.076 Score=54.64 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++++|+|.| .|.+|+.+++.+.+.| ++|+++|.... .+. .. ---+.+.+|..|.+.+.++.+.+
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~lG-~~viv~d~~~~-----~p~-----~~---~ad~~~~~~~~d~~~l~~~~~~~ 74 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKMG-YKVVVLDPSED-----CPC-----RY---VAHEFIQAKYDDEKALNQLGQKC 74 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTT-----CTT-----GG---GSSEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECCCC-----Chh-----hh---hCCEEEECCCCCHHHHHHHHHhC
Confidence 4578999997 5889999999999999 58888665431 111 00 01256779999999999999889
Q ss_pred CEEEE
Q 007866 86 STVFY 90 (586)
Q Consensus 86 D~Vih 90 (586)
|+|..
T Consensus 75 dvi~~ 79 (377)
T 3orq_A 75 DVITY 79 (377)
T ss_dssp SEEEE
T ss_pred Cccee
Confidence 98854
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.05 Score=54.40 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=71.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCC-CCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSL-SSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l-~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|||.|+|| |.+|..++..|+..+. .++.++|+.... +.. ....+.+.. ...+..... | + .++++++|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k-~~g--~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD 69 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKL-AQA--HAEDILHATPFAHPVWVWA-G--S----YGDLEGAR 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHH--HHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHH--HHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCC
Confidence 68999998 9999999999988762 379998886421 000 000000000 012334332 2 3 34589999
Q ss_pred EEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+||..++... +..........|+.-.+.+.+.+.+.+.+ .++.+|
T Consensus 70 ~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 70 AVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9999998762 33344567788999999999988887543 444443
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.14 Score=52.81 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++++|+|.| +|.+|+.+++.+.+.| ++|+++|.... .+. . .---..+..|..|.+.+.++.+.+
T Consensus 12 ~~~k~IlIlG-~G~~g~~la~aa~~~G-~~vi~~d~~~~-----~~~-~-------~~ad~~~~~~~~d~~~l~~~~~~~ 76 (389)
T 3q2o_A 12 LPGKTIGIIG-GGQLGRMMALAAKEMG-YKIAVLDPTKN-----SPC-A-------QVADIEIVASYDDLKAIQHLAEIS 76 (389)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSTT-----CTT-T-------TTCSEEEECCTTCHHHHHHHHHTC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CEEEEEeCCCC-----Cch-H-------HhCCceEecCcCCHHHHHHHHHhC
Confidence 4678999996 5789999999999999 58988765431 011 0 011245668999999999999999
Q ss_pred CEEEE
Q 007866 86 STVFY 90 (586)
Q Consensus 86 D~Vih 90 (586)
|+|..
T Consensus 77 dvI~~ 81 (389)
T 3q2o_A 77 DVVTY 81 (389)
T ss_dssp SEEEE
T ss_pred CEeee
Confidence 98843
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.083 Score=54.28 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=51.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|++|+|+|+ |..|+.+++.+.+.|+ +|.++|.... .+. ..+ .-..+..|..|.+.+.++.+++|+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~-~v~~~~~~~~-----~~~-----~~~---~~~~~~~~~~d~~~l~~~~~~~d~ 65 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGF-YVIVLDPTPR-----SPA-----GQV---ADEQIVAGFFDSERIEDLVKGSDV 65 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSTT-----CTT-----GGG---SSEEEECCTTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCCC-----Cch-----hhh---CceEEECCCCCHHHHHHHHhcCCE
Confidence 479999986 8999999999999995 8888665321 000 001 124567899999999988889999
Q ss_pred EEEc
Q 007866 88 VFYV 91 (586)
Q Consensus 88 Vih~ 91 (586)
|+-.
T Consensus 66 v~~~ 69 (380)
T 3ax6_A 66 TTYD 69 (380)
T ss_dssp EEES
T ss_pred EEec
Confidence 8853
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0085 Score=61.26 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
.+.+|+|+||+|-+|..+++.+...|. +|++.|... ++......+ +.. ...|..+. +.+.+...
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~ 228 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQ--------KKLQMAEKL---GAA-AGFNYKKEDFSEATLKFTK 228 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH--------HHHHHHHHH---TCS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCH--------HHHHHHHHc---CCc-EEEecCChHHHHHHHHHhc
Confidence 468999999999999999999999995 899855432 110000111 111 12355443 33444443
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||+++|.
T Consensus 229 ~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 229 GAGVNLILDCIGG 241 (354)
T ss_dssp TSCEEEEEESSCG
T ss_pred CCCceEEEECCCc
Confidence 58999999975
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.021 Score=57.74 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=54.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcE--EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCI--VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~--V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|||.|.||+|++|+.+++.|.+++|.. ++.+. .+......+. +....+.+...| ++ . + ++|
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~-------s~~~~g~~l~--~~g~~i~v~~~~---~~---~-~-~~D 63 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYA-------SPRSAGVRLA--FRGEEIPVEPLP---EG---P-L-PVD 63 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEE-------CGGGSSCEEE--ETTEEEEEEECC---SS---C-C-CCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEee-------ccccCCCEEE--EcCceEEEEeCC---hh---h-c-CCC
Confidence 579999999999999999999776522 22211 1111100000 111122222222 22 1 4 899
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
+||-+.+.. .+...+....+.|+ ++|-.|+..
T Consensus 64 vV~~a~g~~---------------~s~~~a~~~~~~G~-~vId~s~~~ 95 (331)
T 2yv3_A 64 LVLASAGGG---------------ISRAKALVWAEGGA-LVVDNSSAW 95 (331)
T ss_dssp EEEECSHHH---------------HHHHHHHHHHHTTC-EEEECSSSS
T ss_pred EEEECCCcc---------------chHHHHHHHHHCCC-EEEECCCcc
Confidence 999987642 13345566667787 688888874
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=54.74 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+|+|.|+| +|.+|+.+++.|.+.|+ +|+++|+... +. +.+...++... .+.++++++|
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~-~V~~~~r~~~--------~~---~~~~~~g~~~~--------~~~~~~~~~D 85 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGF-KVVVGSRNPK--------RT---ARLFPSAAQVT--------FQEEAVSSPE 85 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTC-CEEEEESSHH--------HH---HHHSBTTSEEE--------EHHHHTTSCS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCC-EEEEEeCCHH--------HH---HHHHHcCCcee--------cHHHHHhCCC
Confidence 467999998 89999999999999995 8999665431 10 00011133332 2345678999
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
+||.+...
T Consensus 86 vVi~av~~ 93 (215)
T 2vns_A 86 VIFVAVFR 93 (215)
T ss_dssp EEEECSCG
T ss_pred EEEECCCh
Confidence 99987653
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.057 Score=54.28 Aligned_cols=113 Identities=14% Similarity=-0.004 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEE-EccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYH-QVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~-~~Dl~d~~~l~~~l 82 (586)
..+||.|+|+ |.+|..++..|+..|. .+|.++|+.... ..... ..+.+ .+. ...... ..|.. .+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~--~~g~a-~DL~~~~~~~-~~~~i~~t~d~~-------~~ 87 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDK--LKGEM-MDLEHGSLFL-HTAKIVSGKDYS-------VS 87 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHH--HHHHH-HHHHHHGGGS-CCSEEEEESSSC-------SC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHH--HHHHH-HHhhhhhhcc-cCCeEEEcCCHH-------Hh
Confidence 4689999998 9999999999999884 379998875421 00000 00000 011 112222 33442 27
Q ss_pred cCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 83 EGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 83 ~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+++|+||-+||.. .+..+.......|+.-.+.+.+.+.+.+.. .++.+|
T Consensus 88 ~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 88 AGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp SSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 8999999999986 233344567888999899999988887543 455444
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.1 Score=45.33 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=53.7
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..++|.|.|+| |.+|+.+++.|++.| ++|+..|. ... .. .+.. ...++ .++.+
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp--------~~~--~i------~G~~-~~~s~------~el~~ 68 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNP--------NYD--EI------EGLK-CYRSV------RELPK 68 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECT--------TCS--EE------TTEE-CBSSG------GGSCT
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCC--------CCC--eE------CCee-ecCCH------HHhCC
Confidence 46799999997 899999999999999 58777332 211 00 1222 11222 22334
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
++|+|+-+... .....+++.|.+.|++.++..+|
T Consensus 69 ~vDlvii~vp~---------------~~v~~v~~~~~~~g~~~i~~~~~ 102 (138)
T 1y81_A 69 DVDVIVFVVPP---------------KVGLQVAKEAVEAGFKKLWFQPG 102 (138)
T ss_dssp TCCEEEECSCH---------------HHHHHHHHHHHHTTCCEEEECTT
T ss_pred CCCEEEEEeCH---------------HHHHHHHHHHHHcCCCEEEEcCc
Confidence 68988876521 11334566677788887665553
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.009 Score=60.73 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++|+|+||+|-+|..+++.+...|. +|++.+..
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~ 189 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGS 189 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 468999999999999999999999995 89985543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.012 Score=59.48 Aligned_cols=35 Identities=20% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++|+|+||+|-+|...++.+...|. +|++.+..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~ 183 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGG 183 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 468999999999999999999999995 99995543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.039 Score=55.24 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=67.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc--CCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhcC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|||.|+|+ |++|..++..|.+. |+ +|.++|+.... +. .... .+.+.. .......... .|.+ + +++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~-~V~l~D~~~~~-~~-~~~~-~l~~~~~~~~~~~~i~~t--~d~~---~-l~~ 69 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLAR-ELVLLDVVEGI-PQ-GKAL-DMYESGPVGLFDTKVTGS--NDYA---D-TAN 69 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCS-EEEEECSSSSH-HH-HHHH-HHHTTHHHHTCCCEEEEE--SCGG---G-GTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCC-EEEEEeCChhH-HH-HHHH-hHHhhhhcccCCcEEEEC--CCHH---H-HCC
Confidence 58999998 99999999999985 64 99998876421 00 0000 000000 0011122111 2222 2 789
Q ss_pred CCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 85 ASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+|+||-+++... +..........|+.-.+.+++.+.+.+.+ .++.+|
T Consensus 70 aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 70 SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 999999998652 23334567778888888898888776533 445443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.061 Score=53.42 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++++|.|.||.|.+|..++..|.+.|+ +|.++|+ ++. ....++++++|
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~--------~~~-----------------------~~~~~~~~~aD 67 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGY-PISILDR--------EDW-----------------------AVAESILANAD 67 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECT--------TCG-----------------------GGHHHHHTTCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEEC--------Ccc-----------------------cCHHHHhcCCC
Confidence 346899999999999999999999995 8998443 221 02345678899
Q ss_pred EEEEccc
Q 007866 87 TVFYVDA 93 (586)
Q Consensus 87 ~Vih~aa 93 (586)
+||-+..
T Consensus 68 vVilavp 74 (298)
T 2pv7_A 68 VVIVSVP 74 (298)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 9998763
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.042 Score=51.36 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=29.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
|+|+|+||+|++|+.+++.|.+.|+ +|+++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5899999999999999999999995 99996654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.014 Score=59.62 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=46.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCCCCCCeEEEEccCCCH---HHHHHHhc-
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVDVRDI---SQIKKVLE- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~- 83 (586)
++|+|+||+|-+|..+++.+...|..+|++.|... ++.. ..+.+ +.. ...|..+. +.+.+...
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~--------~~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH--------EKCILLTSEL---GFD-AAINYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH--------HHHHHHHHTS---CCS-EEEETTTSCHHHHHHHHCTT
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH--------HHHHHHHHHc---CCc-eEEecCchHHHHHHHHhcCC
Confidence 89999999999999999999999932888855432 1100 00001 111 23455543 23333333
Q ss_pred CCCEEEEccc
Q 007866 84 GASTVFYVDA 93 (586)
Q Consensus 84 ~~D~Vih~aa 93 (586)
++|+||+++|
T Consensus 230 ~~d~vi~~~G 239 (357)
T 2zb4_A 230 GVDVYFDNVG 239 (357)
T ss_dssp CEEEEEESCC
T ss_pred CCCEEEECCC
Confidence 5899999997
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.053 Score=56.70 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+++++|+|.|+ |.+|+.+++.+.+.| ++|+++|.... .+. .. -.-+.+.+|..|.+.+.++.+++
T Consensus 33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG-~~v~v~d~~~~-----~p~-----~~---~ad~~~~~~~~d~~~l~~~a~~~ 97 (419)
T 4e4t_A 33 LPGAWLGMVGG-GQLGRMFCFAAQSMG-YRVAVLDPDPA-----SPA-----GA---VADRHLRAAYDDEAALAELAGLC 97 (419)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCTT-----CHH-----HH---HSSEEECCCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCc-----Cch-----hh---hCCEEEECCcCCHHHHHHHHhcC
Confidence 35679999975 899999999999999 58888654321 000 00 01246678999999999999999
Q ss_pred CEEEE
Q 007866 86 STVFY 90 (586)
Q Consensus 86 D~Vih 90 (586)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99983
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.13 Score=53.32 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++++|+|+|+ |.+|+.+++.+.+.| ++|+++| ... .+.. .. ......+.+|..|.+.+.++.+.+|
T Consensus 23 ~~~~I~ilGg-G~lg~~l~~aa~~lG-~~v~~~d-~~~-----~p~~-~~-----ad~~~~~~~~~~d~~~l~~~a~~~d 88 (403)
T 3k5i_A 23 NSRKVGVLGG-GQLGRMLVESANRLN-IQVNVLD-ADN-----SPAK-QI-----SAHDGHVTGSFKEREAVRQLAKTCD 88 (403)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEE-STT-----CTTG-GG-----CCSSCCEESCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEE-CCC-----CcHH-Hh-----ccccceeecCCCCHHHHHHHHHhCC
Confidence 4679999976 899999999999999 5888877 321 1110 01 1112457789999999999999999
Q ss_pred EEEE
Q 007866 87 TVFY 90 (586)
Q Consensus 87 ~Vih 90 (586)
+|+-
T Consensus 89 ~i~~ 92 (403)
T 3k5i_A 89 VVTA 92 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.95 E-value=0.024 Score=56.34 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.+... ++......+ +... ..|..+.+.+.+.+.++|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---ga~~-~~~~~~~~~~~~~~~~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRP--------EKLALPLAL---GAEE-AATYAEVPERAKAWGGLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSG--------GGSHHHHHT---TCSE-EEEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHhc---CCCE-EEECCcchhHHHHhcCce
Confidence 467999999999999999999999995 899855432 211111111 1222 235555133444458899
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
+||+ ++.
T Consensus 192 ~vid-~g~ 198 (302)
T 1iz0_A 192 LVLE-VRG 198 (302)
T ss_dssp EEEE-CSC
T ss_pred EEEE-CCH
Confidence 9999 764
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.17 Score=51.96 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
++|+|+|+|+ |.+|+.+++.+.+.|+ +|.++|.... .+. ... .-+.+..|..|.+.+.++.+ +
T Consensus 10 ~~~~ili~g~-g~~~~~~~~a~~~~G~-~v~~~~~~~~-----~~~-----~~~---~d~~~~~~~~d~~~l~~~~~~~~ 74 (391)
T 1kjq_A 10 AATRVMLLGS-GELGKEVAIECQRLGV-EVIAVDRYAD-----APA-----MHV---AHRSHVINMLDGDALRRVVELEK 74 (391)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTTC-EEEEEESSTT-----CGG-----GGG---SSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEECCCC-----Cch-----hhh---ccceEECCCCCHHHHHHHHHHcC
Confidence 4689999976 7899999999999995 8888765431 010 000 12456778889988888774 7
Q ss_pred CCEEEEc
Q 007866 85 ASTVFYV 91 (586)
Q Consensus 85 ~D~Vih~ 91 (586)
+|+|+..
T Consensus 75 ~d~v~~~ 81 (391)
T 1kjq_A 75 PHYIVPE 81 (391)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 9999864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.012 Score=57.78 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++++|+|+ |-+|+.++..|.+.| .+|+++|+.
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRT 151 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECC
Confidence 5689999998 779999999999999 599995543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.057 Score=54.15 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=66.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CC-CCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SL-SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l-~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+|+|.|.|+ |.+|..++..|.+.|+.+|+++|+.... +... . ..+.. .. ...++.. ..|+ ++++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~-~~~~-~-~~l~~~~~~~~~~~~i~~-t~d~-------~a~~ 71 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGI-PQGK-A-LDITHSMVMFGSTSKVIG-TDDY-------ADIS 71 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH-HHHH-H-HHHHHHHHHHTCCCCEEE-ESCG-------GGGT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchH-HHHH-H-HHHHhhhhhcCCCcEEEE-CCCH-------HHhC
Confidence 579999998 9999999999999995479997765421 0000 0 00000 00 0111211 1221 3578
Q ss_pred CCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecC
Q 007866 84 GASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS 132 (586)
++|+||-+++... +..........|....+.+++.+.+..-. .++.+|.
T Consensus 72 ~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 72 GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp TCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999998652 22223344566777777788877665333 3444543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.032 Score=55.48 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++++|+|+ |-+|+.++..|.+.|..+|+++++ +.++. .+.+.+... .. +..+.+++.+.+.+
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR--------~~~ka~~la~~~~~~-~~----~~~~~~~~~~~~~~ 204 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANR--------TVEKAERLVREGDER-RS----AYFSLAEAETRLAE 204 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECS--------SHHHHHHHHHHSCSS-SC----CEECHHHHHHTGGG
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeC--------CHHHHHHHHHHhhhc-cC----ceeeHHHHHhhhcc
Confidence 35689999997 789999999999999548999544 32211 011111100 00 11233566777889
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||++.+..
T Consensus 205 aDivIn~t~~~ 215 (297)
T 2egg_A 205 YDIIINTTSVG 215 (297)
T ss_dssp CSEEEECSCTT
T ss_pred CCEEEECCCCC
Confidence 99999998765
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.1 Score=53.10 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~D 71 (586)
..+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|..-. .... .....-+++.+..+
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 196 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN 196 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence 578999976 78999999999999977899988764 2334443210 0000 00112245667777
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
+.+...+.+ ++++|+||.+.... .. .-..+-++|.+.++ .+|+.+..
T Consensus 197 i~~~~~~~~-~~~~DlVvd~~Dn~------~~-------~r~~ln~~c~~~~~-p~i~~~~~ 243 (353)
T 3h5n_A 197 INDYTDLHK-VPEADIWVVSADHP------FN-------LINWVNKYCVRANQ-PYINAGYV 243 (353)
T ss_dssp CCSGGGGGG-SCCCSEEEECCCCS------TT-------HHHHHHHHHHHTTC-CEEEEEEE
T ss_pred cCchhhhhH-hccCCEEEEecCCh------HH-------HHHHHHHHHHHhCC-CEEEEEEe
Confidence 766554566 88999999975321 10 11234568888887 57776544
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.031 Score=58.79 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|+|.|.| +|++|..++..|.+.|+ +|+++|+..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~-~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGH-EVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 5899997 79999999999999995 999987754
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.22 Score=49.73 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccC---CCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLD---PSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~---r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.++|+|.|.|+ |.+|..++..|.+.|+. +|.++|+.... +. ..-.++ . . +. ........ .|. +.
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~-~~~~~~~~~~~-~-~-~~-~~~~v~~~--~~~----~~ 72 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER-VEAEVLDMQHG-S-S-FY-PTVSIDGS--DDP----EI 72 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHHHHHHHHHT-G-G-GS-TTCEEEEE--SCG----GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHHHHHHHHhh-h-h-hc-CCeEEEeC--CCH----HH
Confidence 34689999998 99999999999999842 79997775421 00 000000 0 0 10 12222222 122 24
Q ss_pred hcCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 82 LEGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 82 l~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
++++|+||-+++... +..+.......|....+.+++...+.+.+.+|...+
T Consensus 73 ~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 73 CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 678999999997652 233445667778888888888777654443443333
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.22 Score=49.43 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.++||.|+|| |.+|..++..|+.+|. .+|.++|+... +......+.. ...+++.. ..|+ +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~----~~g~a~dl~~-~~~~~i~~-t~d~-------~~l~~a 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG----TKGATMDLEI-FNLPNVEI-SKDL-------SASAHS 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC---------CHHHHHH-HTCTTEEE-ESCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc----hHHHHHHHhh-hcCCCeEE-eCCH-------HHHCCC
Confidence 4589999996 9999999999999883 27999888642 1100000111 11123433 2332 458899
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-.++...+..........|..-.+.+++.+.+.... .++.+|
T Consensus 79 D~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 79 KVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp SEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 9999999875333344566778888888888888876433 344444
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.019 Score=58.38 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
.+++|||+||+|-+|..+++.+...|. +|++.+... ++......+ +... ..|..+. +.+.+...
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~--------~~~~~~~~~---ga~~-~~d~~~~~~~~~~~~~~~ 232 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSE--------DKLRRAKAL---GADE-TVNYTHPDWPKEVRRLTG 232 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHH---TCSE-EEETTSTTHHHHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHhc---CCCE-EEcCCcccHHHHHHHHhC
Confidence 468999999999999999999999995 898855432 110000111 1111 2355543 33444443
Q ss_pred --CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 84 --GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 84 --~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
++|+||++++.. . ....++.++..| +++.+++.
T Consensus 233 ~~~~d~vi~~~g~~----~-----------~~~~~~~l~~~G--~~v~~g~~ 267 (343)
T 2eih_A 233 GKGADKVVDHTGAL----Y-----------FEGVIKATANGG--RIAIAGAS 267 (343)
T ss_dssp TTCEEEEEESSCSS----S-----------HHHHHHHEEEEE--EEEESSCC
T ss_pred CCCceEEEECCCHH----H-----------HHHHHHhhccCC--EEEEEecC
Confidence 689999999821 0 223445555444 78877654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.056 Score=53.99 Aligned_cols=111 Identities=11% Similarity=0.019 Sum_probs=70.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEE-ccCCCHHHHHHHhcCCC
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEGAS 86 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~-~Dl~d~~~l~~~l~~~D 86 (586)
||.|+|| |.+|..++..|+..|..+|.++|+.... + +.. ...+.+. .......... .| . ++++++|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~-~-~g~-~~dl~~~~~~~~~~~~i~~t~d---~----~a~~~aD 69 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGK-P-QGE-ALDLAHAAAELGVDIRISGSNS---Y----EDMRGSD 69 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTH-H-HHH-HHHHHHHHHHHTCCCCEEEESC---G----GGGTTCS
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhh-H-HHH-HHHHHHhhhhcCCCeEEEECCC---H----HHhCCCC
Confidence 5899998 9999999999988885369998876421 0 000 0000000 0011222222 23 2 3688999
Q ss_pred EEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 87 TVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+||-.++... +..........|+.-.+.+++.+.+.... .+|.+|
T Consensus 70 ~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 70 IVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp EEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 9999998762 33344566788888899999988876543 556554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.062 Score=54.59 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---HHHHHHHh--c
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVL--E 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---~~~l~~~l--~ 83 (586)
++++|+||+|-+|...++.+...|. +|++.+... ++......+ +... ..|..+ .+.+.+.. .
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~--------~~~~~~~~~---Ga~~-~~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRD--------EQIALLKDI---GAAH-VLNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCG--------GGHHHHHHH---TCSE-EEETTSTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCCE-EEECCcHHHHHHHHHHhcCC
Confidence 6899999999999999999999995 999855432 211111111 1111 123333 23344443 3
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
++|+||++++.. .....++.++..| +++.+++.
T Consensus 233 g~D~vid~~g~~---------------~~~~~~~~l~~~G--~iv~~G~~ 265 (349)
T 3pi7_A 233 QPRIFLDAVTGP---------------LASAIFNAMPKRA--RWIIYGRL 265 (349)
T ss_dssp CCCEEEESSCHH---------------HHHHHHHHSCTTC--EEEECCCS
T ss_pred CCcEEEECCCCh---------------hHHHHHhhhcCCC--EEEEEecc
Confidence 799999998752 1123445554444 78877654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.029 Score=56.93 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~-- 83 (586)
.+.+|||+||+|-+|...++.+...|. +|++.+... ++......+. ....+..+ .+ .+.+.+...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~g--a~~v~~~~-~~~~~~v~~~~~~~ 226 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRT--------AATEFVKSVG--ADIVLPLE-EGWAKAVREATGGA 226 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSG--------GGHHHHHHHT--CSEEEESS-TTHHHHHHHHTTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH--------HHHHHHHhcC--CcEEecCc-hhHHHHHHHHhCCC
Confidence 468999999999999999999999995 898855432 2111111111 11223333 23 234444443
Q ss_pred CCCEEEEcccC
Q 007866 84 GASTVFYVDAT 94 (586)
Q Consensus 84 ~~D~Vih~aa~ 94 (586)
++|+||++++.
T Consensus 227 g~Dvvid~~g~ 237 (342)
T 4eye_A 227 GVDMVVDPIGG 237 (342)
T ss_dssp CEEEEEESCC-
T ss_pred CceEEEECCch
Confidence 58999999875
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.018 Score=58.71 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.|..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~ 201 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGS 201 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 468999999999999999999999995 89995543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.078 Score=53.45 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC----CCCCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD----SLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~----~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+++||.|+|| |.+|..++..|...|+..|.++|+.... +..... .+.+ .....++.. ..|+ +++
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~-l~~~~~--~l~~~~~~~~~~~~i~~-t~d~-------~al 80 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGV-PQGKAL--DLNHCMALIGSPAKIFG-ENNY-------EYL 80 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTH-HHHHHH--HHHHHHHHHTCCCCEEE-ESCG-------GGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHH--HHHhHhhccCCCCEEEE-CCCH-------HHH
Confidence 3479999998 9999999999999996469998876421 000000 0000 001112221 1232 457
Q ss_pred cCCCEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 83 EGASTVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 83 ~~~D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
+++|+||-+++... +..........|..-.+.+.+.+.+...+ .++.+|
T Consensus 81 ~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 81 QNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp TTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 89999999997651 11122245566777788888877765433 344444
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.33 Score=49.37 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC-CCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-RDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl-~d~~~l~~~l~~~D 86 (586)
||+|+|+| .|..|..++..+.+.| ++|+++|.++. .+. ..+ --+++..|. .|.+.+....+++|
T Consensus 1 MK~I~ilG-gg~~g~~~~~~Ak~~G-~~vv~vd~~~~-----~~~-~~~-------aD~~~~~~~~~d~~~~~~~~~~~D 65 (363)
T 4ffl_A 1 MKTICLVG-GKLQGFEAAYLSKKAG-MKVVLVDKNPQ-----ALI-RNY-------ADEFYCFDVIKEPEKLLELSKRVD 65 (363)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCTT-----CTT-TTT-------SSEEEECCTTTCHHHHHHHHTSSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCCC-----Chh-Hhh-------CCEEEECCCCcCHHHHHHHhcCCC
Confidence 68999998 5899999999999999 58888765431 011 001 124555564 56777777778999
Q ss_pred EEEEc
Q 007866 87 TVFYV 91 (586)
Q Consensus 87 ~Vih~ 91 (586)
+|+-.
T Consensus 66 ~v~~~ 70 (363)
T 4ffl_A 66 AVLPV 70 (363)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98754
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.49 Score=47.90 Aligned_cols=113 Identities=8% Similarity=-0.001 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCC------------CCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~------------~~l~~~~~~~~~~D 71 (586)
..+|+|.|+ |-+|++++..|...|.-+++++|.+. ..++.|.--- .... +....-+++.+..+
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 578999975 78999999999999976899988764 2223332100 0000 00111234455555
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
+.+ ...+.++++|+||.+... . ..-..+-++|++.++ .+|.+++.+.+|.
T Consensus 115 ~~~--~~~~~~~~~dvVv~~~d~------~--------~~r~~ln~~~~~~~i-p~i~~~~~G~~G~ 164 (346)
T 1y8q_A 115 IEK--KPESFFTQFDAVCLTCCS------R--------DVIVKVDQICHKNSI-KFFTGDVFGYHGY 164 (346)
T ss_dssp GGG--CCHHHHTTCSEEEEESCC------H--------HHHHHHHHHHHHTTC-EEEEEEEEBTEEE
T ss_pred cCc--chHHHhcCCCEEEEcCCC------H--------HHHHHHHHHHHHcCC-CEEEEeecccEEE
Confidence 543 235677899999986422 2 223346678888885 7898888877764
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.065 Score=54.31 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.|-+|.|.||||++|..|++.|.++...+++.+.
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~ 45 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 45 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3568999999999999999999999866777743
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.04 E-value=0.28 Score=49.44 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
++||.|.|+ |+||+.+++.|.+++..+|.++
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEE
Confidence 369999999 9999999999998765566654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.52 Score=46.40 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCCC-CCC------------CCCCCCCeEEEEcc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESNS-LLP------------DSLSSGRAEYHQVD 71 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~~-~~~------------~~l~~~~~~~~~~D 71 (586)
...+|+|.| .|-+|+.++..|...|.-+++++|.+. ..++.|.-... ... .....-+++.+..+
T Consensus 35 ~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 457899996 488999999999999976899988765 22333321100 000 00112245566677
Q ss_pred CCCHHHHHHHh-----------cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 72 VRDISQIKKVL-----------EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 72 l~d~~~l~~~l-----------~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
+.+.+.+.+.+ +++|+||.+... +. .-..+-++|.+.++ .+|+.+..
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn------~~--------~R~~in~~c~~~~~-Pli~~gv~ 171 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN------FE--------ARMTINTACNELGQ-TWMESGVS 171 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS------HH--------HHHHHHHHHHHHTC-CEEEEEEC
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCcc------hh--------hhhHHHHHHHHhCC-CEEEeeee
Confidence 77766666655 589999987522 22 22335568888886 57766543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.081 Score=54.17 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~-~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+.+|+|+|+ |-+|...++.+...|. +|++.+... ++..... .+ +... ..|..+.+.+.++..++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~l---Ga~~-v~~~~~~~~~~~~~~~~ 252 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS-KVTVISTSP--------SKKEEALKNF---GADS-FLVSRDQEQMQAAAGTL 252 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCG--------GGHHHHHHTS---CCSE-EEETTCHHHHHHTTTCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHhc---CCce-EEeccCHHHHHHhhCCC
Confidence 4679999996 9999999999999995 888855432 2110000 11 1221 24666777777777789
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||++++..
T Consensus 253 D~vid~~g~~ 262 (366)
T 1yqd_A 253 DGIIDTVSAV 262 (366)
T ss_dssp EEEEECCSSC
T ss_pred CEEEECCCcH
Confidence 9999999863
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.098 Score=51.31 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++++|+|+ |-.|+.++..|.+.|..+|+++ .|+.++. +.+. .++.. ...+++.+++.++|
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~--------~R~~~~a---~~la-~~~~~-----~~~~~~~~~~~~aD 177 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVA--------NRTMSRF---NNWS-LNINK-----INLSHAESHLDEFD 177 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEE--------CSCGGGG---TTCC-SCCEE-----ECHHHHHHTGGGCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEE--------eCCHHHH---HHHH-Hhccc-----ccHhhHHHHhcCCC
Confidence 4689999986 8999999999999995478884 4444321 1111 11222 13456677788899
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
+||++...
T Consensus 178 iVInaTp~ 185 (277)
T 3don_A 178 IIINTTPA 185 (277)
T ss_dssp EEEECCC-
T ss_pred EEEECccC
Confidence 99998654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.043 Score=55.59 Aligned_cols=75 Identities=12% Similarity=0.039 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---HHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---~~~l~~~l~ 83 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.|.. +++......+ +... ..|..+ .+.+.+...
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~--------~~~~~~~~~l---ga~~-~~~~~~~~~~~~~~~~~~ 210 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRN--------NKHTEELLRL---GAAY-VIDTSTAPLYETVMELTN 210 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESS--------STTHHHHHHH---TCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCC--------HHHHHHHHhC---CCcE-EEeCCcccHHHHHHHHhC
Confidence 468999999999999999999999995 99985543 2211111111 1111 124433 233444443
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||+++|.
T Consensus 211 ~~g~Dvvid~~g~ 223 (340)
T 3gms_A 211 GIGADAAIDSIGG 223 (340)
T ss_dssp TSCEEEEEESSCH
T ss_pred CCCCcEEEECCCC
Confidence 68999999875
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.24 Score=43.37 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=52.7
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+++|.|.|++ |.+|..+++.|++.| ++|+..+ .... .. .++. +..++. ++-+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vn--------p~~~--~i------~G~~-~y~sl~------~l~~~ 77 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVN--------PKYE--EV------LGRK-CYPSVL------DIPDK 77 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEEC--------TTCS--EE------TTEE-CBSSGG------GCSSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEEC--------CCCC--eE------CCee-ccCCHH------HcCCC
Confidence 5789999998 899999999999999 5766632 1111 00 1222 122232 22246
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+|.|+-+... .....+++.|.+.|++.+++.+
T Consensus 78 vDlvvi~vp~---------------~~~~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 78 IEVVDLFVKP---------------KLTMEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHHTCSEEEECT
T ss_pred CCEEEEEeCH---------------HHHHHHHHHHHHcCCCEEEECC
Confidence 8988876421 2234567788888998776543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.2 Score=49.90 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=63.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
||+|.|+| +|.+|..++..|.+.|. ++|.++|+.... +..... .+. ......++.....| . +.+++
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~-~~~~~~--~l~~~~~~~~~~~~~~~~d---~----~~~~~ 69 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAK-VKADQI--DFQDAMANLEAHGNIVIND---W----AALAD 69 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHH--HHHHHGGGSSSCCEEEESC---G----GGGTT
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHH-HHHHHH--HHHhhhhhcCCCeEEEeCC---H----HHhCC
Confidence 37999998 79999999999999982 389997775421 000000 000 00011123332233 2 35789
Q ss_pred CCEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 85 ASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 85 ~D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
+|+||-+++... +..........|..-.+.+++.+.+...+
T Consensus 70 aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~ 115 (309)
T 1hyh_A 70 ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115 (309)
T ss_dssp CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999887632 22222344567777778888888776543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.13 Score=50.57 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
+||+|.|.|+||.+|+.+++.|.+.|+ +|+++|+.
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~ 44 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAH-HLAAIEIA 44 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 357999999999999999999999995 99996554
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.22 Score=49.99 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=26.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.||.|.| .|+||+.+++.|.++++.+|.++.
T Consensus 2 ikVgI~G-~G~iG~~l~R~l~~~~~veiv~i~ 32 (330)
T 1gad_O 2 IKVGING-FGRIGRIVFRAAQKRSDIEIVAIN 32 (330)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred eEEEEEC-cCHHHHHHHHHHHcCCCeEEEEEc
Confidence 5899999 599999999999998766766643
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.32 Score=49.05 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~ 39 (586)
++||.|.|+ |+||+.+++.|.++ +..+|+++
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaI 34 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAI 34 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEE
Confidence 369999999 99999999999987 55566654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.53 E-value=0.025 Score=58.02 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+++|+|+|+ |-+|+.+++.+...|. +|+++|+... |... ..+.. ...+. .+..+.+.+.+.+.++|
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~----r~~~---~~~~~-~~~~~---~~~~~~~~~~~~~~~~D 232 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVE----RLSY---LETLF-GSRVE---LLYSNSAEIETAVAEAD 232 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH----HHHH---HHHHH-GGGSE---EEECCHHHHHHHHHTCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHH----HHHH---HHHhh-CceeE---eeeCCHHHHHHHHcCCC
Confidence 3589999999 9999999999999996 9999665431 0000 00000 01111 12234566777888999
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
+||++++..
T Consensus 233 vVI~~~~~~ 241 (361)
T 1pjc_A 233 LLIGAVLVP 241 (361)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCcC
Confidence 999998764
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.067 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.|+||.|.|+ |+||+.+++.|.+++..+|.++.
T Consensus 16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEE
T ss_pred cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEec
Confidence 4579999999 99999999999988656766654
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.36 Score=52.68 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCC------------CCCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLL------------PDSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~------------~~~l~~~~~~~~~~D 71 (586)
..+|+|.|+ |-+|.+++..|...|.-+++++|.+. ..++.|+.- .... ......-++..+..+
T Consensus 17 ~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~ 95 (640)
T 1y8q_B 17 GGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95 (640)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESC
T ss_pred cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 468999976 88999999999999976899988765 234444311 0000 011122345667777
Q ss_pred CCCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
+.+.....+.++++|+||.+... ...-..+-++|.++++ .+|+.++.+-+|
T Consensus 96 i~~~~~~~~~~~~~DlVvda~Dn--------------~~aR~~ln~~c~~~~i-PlI~~g~~G~~G 146 (640)
T 1y8q_B 96 IMNPDYNVEFFRQFILVMNALDN--------------RAARNHVNRMCLAADV-PLIESGTAGYLG 146 (640)
T ss_dssp TTSTTSCHHHHTTCSEEEECCSC--------------HHHHHHHHHHHHHHTC-CEEEEEEETTEE
T ss_pred cchhhhhHhhhcCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEEEecccc
Confidence 75432224567899999997422 2223445667888886 477776665443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.18 Score=53.30 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHH-hcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKV-LEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~ 84 (586)
..++|+|.| .|-+|.++++.|.+ + ++|++.+.+. +++ .+.+.+ ++...+.||-+|.+-|.+. +++
T Consensus 234 ~~~~v~I~G-gG~ig~~lA~~L~~-~-~~v~iIE~d~--------~r~~~la~~l--~~~~Vi~GD~td~~~L~ee~i~~ 300 (461)
T 4g65_A 234 PYRRIMIVG-GGNIGASLAKRLEQ-T-YSVKLIERNL--------QRAEKLSEEL--ENTIVFCGDAADQELLTEENIDQ 300 (461)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHTT-T-SEEEEEESCH--------HHHHHHHHHC--TTSEEEESCTTCHHHHHHTTGGG
T ss_pred cccEEEEEc-chHHHHHHHHHhhh-c-CceEEEecCH--------HHHHHHHHHC--CCceEEeccccchhhHhhcCchh
Confidence 357898886 59999999999854 4 4888855543 211 111122 4678999999999988764 678
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+|+++-+.+. | +.|+..+. .|++.|++|.|-.=.-..|
T Consensus 301 ~D~~ia~T~~-----D-----e~Ni~~~l----lAk~~gv~kvIa~vn~~~~ 338 (461)
T 4g65_A 301 VDVFIALTNE-----D-----ETNIMSAM----LAKRMGAKKVMVLIQRGAY 338 (461)
T ss_dssp CSEEEECCSC-----H-----HHHHHHHH----HHHHTTCSEEEEECSCHHH
T ss_pred hcEEEEcccC-----c-----HHHHHHHH----HHHHcCCccccccccccch
Confidence 9999976533 1 45665443 6678999988854433333
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.053 Score=54.68 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---HHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---~~~l~~~l~ 83 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.+... ++......+ +... ..|..+ .+.+.+...
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---ga~~-~~~~~~~~~~~~~~~~~~ 214 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTD--------EKLKIAKEY---GAEY-LINASKEDILRQVLKFTN 214 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHT---TCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCcE-EEeCCCchHHHHHHHHhC
Confidence 568999999999999999999999995 899865532 111111111 1111 123333 334444443
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||++++.
T Consensus 215 ~~g~D~vid~~g~ 227 (334)
T 3qwb_A 215 GKGVDASFDSVGK 227 (334)
T ss_dssp TSCEEEEEECCGG
T ss_pred CCCceEEEECCCh
Confidence 58999999875
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.39 Score=48.27 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=25.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc--CCcEEEEe
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT 39 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~ 39 (586)
.||.|.|+ |+||+.+++.|.++ +..+|.++
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eivaI 33 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVI 33 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEE
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEE
Confidence 58999999 99999999999988 54566553
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.046 Score=54.96 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---HHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---~~~l~~~l~ 83 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.+... ++......+ +... ..|..+ .+.+.+...
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---Ga~~-~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSP--------EKAAHAKAL---GAWE-TIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSH--------HHHHHHHHH---TCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCCE-EEeCCCccHHHHHHHHhC
Confidence 468999999999999999999999995 899855432 111111111 1111 123333 334444443
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+||++++.
T Consensus 207 ~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 207 GKKCPVVYDGVGQ 219 (325)
T ss_dssp TCCEEEEEESSCG
T ss_pred CCCceEEEECCCh
Confidence 58999999875
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.043 Score=57.90 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=29.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|+|.|.| +|++|..++..|.+.|+ +|+++|+..
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~-~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGA-NVRCIDTDR 35 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence 7999996 59999999999999995 999988765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.062 Score=55.33 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|+|+ |-+|..+++.+...|. +|+++|+... +... ..+.+. ..+ ..+..+.+.+.+.+.++
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~----~l~~---~~~~~g-~~~---~~~~~~~~~l~~~l~~a 232 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINID----KLRQ---LDAEFC-GRI---HTRYSSAYELEGAVKRA 232 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH----HHHH---HHHHTT-TSS---EEEECCHHHHHHHHHHC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHH----HHHH---HHHhcC-Cee---EeccCCHHHHHHHHcCC
Confidence 35789999998 9999999999999995 9999776532 1000 000010 111 12334566778888899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||.+++..
T Consensus 233 DvVi~~~~~p 242 (377)
T 2vhw_A 233 DLVIGAVLVP 242 (377)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCcC
Confidence 9999988754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.057 Score=54.84 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l 82 (586)
.+++|+|+||+|-+|..+++.+... |. +|++.|... ++......+ +... ..|..+. +.+.+..
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~--------~~~~~~~~~---g~~~-~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVRE--------EAVEAAKRA---GADY-VINASMQDPLAEIRRIT 236 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSH--------HHHHHHHHH---TCSE-EEETTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCH--------HHHHHHHHh---CCCE-EecCCCccHHHHHHHHh
Confidence 4689999999999999999999999 95 898865432 110000111 1111 2344442 3355555
Q ss_pred c--CCCEEEEcccC
Q 007866 83 E--GASTVFYVDAT 94 (586)
Q Consensus 83 ~--~~D~Vih~aa~ 94 (586)
. ++|+||++++.
T Consensus 237 ~~~~~d~vi~~~g~ 250 (347)
T 1jvb_A 237 ESKGVDAVIDLNNS 250 (347)
T ss_dssp TTSCEEEEEESCCC
T ss_pred cCCCceEEEECCCC
Confidence 3 68999999875
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.34 Score=47.32 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++++|.|++|.+|+.++..|+++|. +|+++ .+.. ..+.+.+..+
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~--------h~~t------------------------~~L~~~~~~A 204 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVC--------HIKT------------------------KDLSLYTRQA 204 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEE--------CTTC------------------------SCHHHHHTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEE--------eCCc------------------------hhHHHHhhcC
Confidence 4689999999999999999999999995 88883 3221 1245778899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||...+..
T Consensus 205 DIVI~Avg~p 214 (285)
T 3p2o_A 205 DLIIVAAGCV 214 (285)
T ss_dssp SEEEECSSCT
T ss_pred CEEEECCCCC
Confidence 9999988764
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.35 Score=48.19 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|+|+ |-.|+.++..|.+.|..+|+++++
T Consensus 147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nR 180 (312)
T 3t4e_A 147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNR 180 (312)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEEC
Confidence 5789999987 889999999999999557888433
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.48 Score=47.19 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
+..+++++|.|++.-+|+.+++.|++.| .+|+++|+.......|... +.............+.+.+.+.+.+
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~g-AtVtv~nR~~~~l~~ra~~-------la~~~~~~t~~~~t~~~~L~e~l~~ 245 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGES-------LKLNKHHVEDLGEYSEDLLKKCSLD 245 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCC-------SSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCC-CEEEEEeCchHHHHhHHHH-------HhhhcccccccccccHhHHHHHhcc
Confidence 3467999999998899999999999999 4899976653211222221 1111011111111335678899999
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||-..+..
T Consensus 246 ADIVIsAtg~p 256 (320)
T 1edz_A 246 SDVVITGVPSE 256 (320)
T ss_dssp CSEEEECCCCT
T ss_pred CCEEEECCCCC
Confidence 99999988764
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.19 Score=50.36 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=67.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc--EEEEecCCcccccCCCCCC-CCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESN-SLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~--~V~~~d~~~~~~l~r~~~~-~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|+|+ |.+|..++..|.+.| . +|.++|+.... +...... ....... ....... .|. +.++++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~-~~~~~~~l~~~~~~~--~~~~i~~---~d~----~~~~~a 68 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKR-AEGDALDLIHGTPFT--RRANIYA---GDY----ADLKGS 68 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH-HHHHHHHHHHHGGGS--CCCEEEE---CCG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHH-HHHHHHHHHhhhhhc--CCcEEEe---CCH----HHhCCC
Confidence 58999998 999999999999998 4 79997775421 0000000 0000000 1122222 232 347899
Q ss_pred CEEEEcccCCC-CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Q 007866 86 STVFYVDATDL-NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~~-~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~S 131 (586)
|+||-+++... +..........|+...+.+++.+.+.... .+|.+|
T Consensus 69 DvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 69 DVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 99999988753 22234456677888888888888775433 344443
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=91.91 E-value=0.41 Score=48.19 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
+.||.|.|. |+||+.+++.|.+++..+|.++.
T Consensus 3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~ 34 (335)
T 1u8f_O 3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAIN 34 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEE
T ss_pred ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEec
Confidence 469999996 99999999999987656766543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.12 Score=53.99 Aligned_cols=37 Identities=30% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~ 44 (586)
..|.+|.|. |.||+|-.++..|.+.|| +|+++|+++.
T Consensus 19 ~~m~~IaVi-GlGYVGLp~A~~~A~~G~-~V~g~Did~~ 55 (444)
T 3vtf_A 19 SHMASLSVL-GLGYVGVVHAVGFALLGH-RVVGYDVNPS 55 (444)
T ss_dssp CCCCEEEEE-CCSHHHHHHHHHHHHHTC-EEEEECSCHH
T ss_pred CCCCEEEEE-ccCHHHHHHHHHHHhCCC-cEEEEECCHH
Confidence 457799999 689999999999999995 9999998864
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.87 E-value=0.16 Score=51.43 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=24.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
.||.|.|+ |++|+.+++.|.+++..++.+
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elva 30 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVG 30 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEE
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEEE
Confidence 58999999 999999999999876556655
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.008 Score=52.76 Aligned_cols=70 Identities=10% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+++|+|.|+ |.+|+.+++.|.+.|. +|+++|+.. ++. .+...+ +.... +..+ +.++++++|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~--------~~~~~~a~~~---~~~~~--~~~~---~~~~~~~~D 82 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNI--------DHVRAFAEKY---EYEYV--LIND---IDSLIKNND 82 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCH--------HHHHHHHHHH---TCEEE--ECSC---HHHHHHTCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCH--------HHHHHHHHHh---CCceE--eecC---HHHHhcCCC
Confidence 689999985 9999999999999995 688865543 210 000101 12221 2223 355678899
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
+||.+.+..
T Consensus 83 ivi~at~~~ 91 (144)
T 3oj0_A 83 VIITATSSK 91 (144)
T ss_dssp EEEECSCCS
T ss_pred EEEEeCCCC
Confidence 999988764
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.44 Score=46.86 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH--HHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK--KVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~--~~l~ 83 (586)
..+++++|.|++|.+|+.++..|++.|. +|+++ .|.+. .+. +.+.
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~--------~~~T~------------------------~l~l~~~~~ 209 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIV--------HSGTS------------------------TEDMIDYLR 209 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEE--------CTTSC------------------------HHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEE--------eCCCC------------------------Cchhhhhhc
Confidence 4689999999999999999999999995 89883 33111 233 7788
Q ss_pred CCCEEEEcccCC
Q 007866 84 GASTVFYVDATD 95 (586)
Q Consensus 84 ~~D~Vih~aa~~ 95 (586)
.+|+||...+..
T Consensus 210 ~ADIVI~Avg~p 221 (300)
T 4a26_A 210 TADIVIAAMGQP 221 (300)
T ss_dssp TCSEEEECSCCT
T ss_pred cCCEEEECCCCC
Confidence 999999998864
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.096 Score=53.52 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC--H-HHHHHHh-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--I-SQIKKVL- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d--~-~~l~~~l- 82 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.+... ++......+ +... ..|..+ . +.+.+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~--------~~~~~~~~~---Ga~~-~~~~~~~~~~~~~~~~~~ 229 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSD--------EKSAFLKSL---GCDR-PINYKTEPVGTVLKQEYP 229 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSH--------HHHHHHHHT---TCSE-EEETTTSCHHHHHHHHCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCH--------HHHHHHHHc---CCcE-EEecCChhHHHHHHHhcC
Confidence 468999999999999999999999995 899855432 110010111 1111 123332 2 2233332
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
.++|+||++++.. .....++.++..| +++.+++..
T Consensus 230 ~g~D~vid~~g~~---------------~~~~~~~~l~~~G--~iv~~g~~~ 264 (362)
T 2c0c_A 230 EGVDVVYESVGGA---------------MFDLAVDALATKG--RLIVIGFIS 264 (362)
T ss_dssp TCEEEEEECSCTH---------------HHHHHHHHEEEEE--EEEECCCGG
T ss_pred CCCCEEEECCCHH---------------HHHHHHHHHhcCC--EEEEEeCCC
Confidence 3689999998731 1223445555444 788887754
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.56 Score=47.87 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhc--CCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~ 39 (586)
++||.|.|+ |.||+.+++.|.++ +..+|+++
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaI 34 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAI 34 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEE
Confidence 369999999 99999999999987 54566654
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.47 Score=47.82 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh---cCCcEEEEec
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTD 40 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~---~g~~~V~~~d 40 (586)
++||.|.|+ |+||+.+++.|.+ +++.+|.+++
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~ 36 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAIN 36 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEE
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence 369999998 9999999999998 6545766543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.44 E-value=0.091 Score=53.09 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
.+++|+|+|| |-+|...++.+...|. +|++.|+. +++......+ +... ..|..+. +.+.+...
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~~--------~~~~~~~~~l---Ga~~-~~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIG--------DEKLELAKEL---GADL-VVNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSC--------HHHHHHHHHT---TCSE-EECTTTSCHHHHHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeCC--------HHHHHHHHHC---CCCE-EecCCCccHHHHHHHHhC
Confidence 4689999999 6699999999999995 99995543 2211111111 1221 2355432 33444336
Q ss_pred CCCEEEEcccC
Q 007866 84 GASTVFYVDAT 94 (586)
Q Consensus 84 ~~D~Vih~aa~ 94 (586)
++|+||++++.
T Consensus 230 ~~d~vid~~g~ 240 (339)
T 1rjw_A 230 GVHAAVVTAVS 240 (339)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEECCCC
Confidence 79999999875
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.36 Score=50.40 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
++|+|+|+|+ |.+|+.+++.+.+.|+ +|.++|..+. .+. .. .-.+.+..|..|.+.+.++.+ +
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~-~v~~v~~~~~-----~~~-----~~---~ad~~~~~~~~d~~~l~~~~~~~~ 82 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGV-EVVAVDRYAN-----APA-----MQ---VAHRSYVGNMMDKDFLWSVVEREK 82 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTC-EEEEEESSTT-----CHH-----HH---HSSEEEESCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCCC-----Chh-----hh---hcceEEECCCCCHHHHHHHHHHcC
Confidence 3579999977 7899999999999994 8888665431 000 00 012456788889988888774 7
Q ss_pred CCEEEEcc
Q 007866 85 ASTVFYVD 92 (586)
Q Consensus 85 ~D~Vih~a 92 (586)
+|+|+...
T Consensus 83 ~d~V~~~~ 90 (433)
T 2dwc_A 83 PDAIIPEI 90 (433)
T ss_dssp CSEEEECS
T ss_pred CCEEEECc
Confidence 99998754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.28 Score=45.78 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=27.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
..+|+|.|.| +|.+|+.++..|.+.|+ +|+++|
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~-~V~~~~ 49 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAGH-EVTYYG 49 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEEEc
Confidence 3578999998 79999999999999995 899944
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.23 Score=43.45 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.8
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHhcCCcEEEEec
Q 007866 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 8 ~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d 40 (586)
+++|.|.|++ |-+|..+++.|++.| ++|+..|
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G-~~v~~vn 47 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQG-YHVIPVS 47 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHT-CCEEEEC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCC-CEEEEeC
Confidence 5789999998 899999999999999 5877743
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.65 Score=45.65 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~-~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..++|+|.|++|-.|+.+++.+++.| +++. .+ .+..... + ..++. +.-| +.++.+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g-~~~v~~V--------nP~~~g~---~---i~G~~-vy~s------l~el~~~~ 63 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYG-TKIVAGV--------TPGKGGM---E---VLGVP-VYDT------VKEAVAHH 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEE--------CTTCTTC---E---ETTEE-EESS------HHHHHHHS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcC-CeEEEEE--------CCCCCCc---e---ECCEE-eeCC------HHHHhhcC
Confidence 35799999999999999999999998 5644 42 2221100 0 01222 2222 233444
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
++|++|-+... ..+..+++.|.+.|++.+|.+++
T Consensus 64 ~~Dv~Ii~vp~---------------~~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 64 EVDASIIFVPA---------------PAAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp CCSEEEECCCH---------------HHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEecCH---------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 79999977522 22455788888899987776554
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.5 Score=46.08 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++++|.|++|.+|+.++..|+++|. +|+++ .+.. ..+.+.+..+
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~--------hs~t------------------------~~L~~~~~~A 205 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTC--------HRFT------------------------TDLKSHTTKA 205 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEE--------CTTC------------------------SSHHHHHTTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEE--------eCCc------------------------hhHHHhcccC
Confidence 4689999999999999999999999995 88883 3211 1245778899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||...+..
T Consensus 206 DIVI~Avg~p 215 (285)
T 3l07_A 206 DILIVAVGKP 215 (285)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988754
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.24 Score=50.02 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=25.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
|.+|.|.|+ |++|+.+++.|.+.+..++++
T Consensus 2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elva 31 (334)
T 2czc_A 2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIG 31 (334)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCTTEEEEE
T ss_pred CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEE
Confidence 469999997 999999999999876556655
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.97 E-value=0.65 Score=46.62 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc--CCcEEEEec
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL--GKCIVRVTD 40 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~--g~~~V~~~d 40 (586)
.||.|.|+ |++|+.+++.|.++ ++.+|++++
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain 33 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAIN 33 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 47999999 99999999999988 656776543
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=90.90 E-value=0.22 Score=43.35 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~ 38 (586)
+++|.|.|++ |-+|+.+++.|++.| ++|+.
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~ 45 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLP 45 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEE
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEE
Confidence 5789999999 899999999999999 57666
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.15 Score=51.88 Aligned_cols=78 Identities=12% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH----HHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK----KVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~----~~l 82 (586)
.+.+|||+|+ |-+|...++.+...|..+|++.|... ++..+...+ ...+..+..|-.+.+.+. +..
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~--------~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDE--------GRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCH--------HHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH--------HHHHHHHHh-chhcccccccccchHHHHHHHHHHh
Confidence 4679999998 99999999999999963488855432 211111122 223333344433333333 333
Q ss_pred c--CCCEEEEcccC
Q 007866 83 E--GASTVFYVDAT 94 (586)
Q Consensus 83 ~--~~D~Vih~aa~ 94 (586)
. ++|+||++.+.
T Consensus 249 ~g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 249 GGIEPAVALECTGV 262 (363)
T ss_dssp SSCCCSEEEECSCC
T ss_pred CCCCCCEEEECCCC
Confidence 2 69999999875
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.21 Score=50.40 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|+||.|.|+ |++|+.+++.|.+....++.++
T Consensus 1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav 31 (337)
T 1cf2_P 1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGV 31 (337)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSSSEEEEEE
T ss_pred CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEE
Confidence 368999999 9999999999998665666553
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=90.72 E-value=0.015 Score=57.33 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
..+++++|+|+ |-+|+.++..|.+.|..+|+++++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R 159 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEEC
Confidence 35789999998 899999999999999547988433
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.18 Score=51.68 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh--cC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--EG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l--~~ 84 (586)
.+.+|+|+||+|-+|...++.+...|. +|++.+... +......+ +... ..|..+.+..+++. .+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~~~---------~~~~~~~l---Ga~~-v~~~~~~~~~~~~~~~~g 248 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCSQD---------ASELVRKL---GADD-VIDYKSGSVEEQLKSLKP 248 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECGG---------GHHHHHHT---TCSE-EEETTSSCHHHHHHTSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeChH---------HHHHHHHc---CCCE-EEECCchHHHHHHhhcCC
Confidence 568999999999999999999999994 888854211 10111111 1221 12444332222222 47
Q ss_pred CCEEEEcccC
Q 007866 85 ASTVFYVDAT 94 (586)
Q Consensus 85 ~D~Vih~aa~ 94 (586)
+|+||++++.
T Consensus 249 ~D~vid~~g~ 258 (375)
T 2vn8_A 249 FDFILDNVGG 258 (375)
T ss_dssp BSEEEESSCT
T ss_pred CCEEEECCCC
Confidence 9999999875
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=90.64 E-value=0.51 Score=46.03 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++++|.|++|.+|+.++..|++.|. +|+++ .+.+ ..+.+.+..+
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~--------hs~T------------------------~~L~~~~~~A 205 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLGGC-TVTVT--------HRFT------------------------RDLADHVSRA 205 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEE--------CTTC------------------------SCHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEE--------eCCC------------------------cCHHHHhccC
Confidence 4689999999999999999999999995 88883 3211 1245678899
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||...+..
T Consensus 206 DIVI~Avg~p 215 (286)
T 4a5o_A 206 DLVVVAAGKP 215 (286)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.24 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
.+.+|+|+|+ |-+|...++.+...|. +|+++|+..
T Consensus 189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRP 223 (405)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence 3579999987 9999999999999995 999977764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.19 Score=51.21 Aligned_cols=74 Identities=19% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC-CCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL-PDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~-~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+.+|+|+|+ |-+|...++.+...|. +|++.|... ++... .+.+ +... ..|..+.+.+.+...++
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~~~~--------~~~~~~~~~l---Ga~~-vi~~~~~~~~~~~~~g~ 245 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGH-HVTVISSSN--------KKREEALQDL---GADD-YVIGSDQAKMSELADSL 245 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESST--------THHHHHHTTS---CCSC-EEETTCHHHHHHSTTTE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCCh--------HHHHHHHHHc---CCce-eeccccHHHHHHhcCCC
Confidence 4679999995 9999999999999995 888855432 21000 0011 1111 23455666666666789
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||++++.
T Consensus 246 D~vid~~g~ 254 (357)
T 2cf5_A 246 DYVIDTVPV 254 (357)
T ss_dssp EEEEECCCS
T ss_pred CEEEECCCC
Confidence 999999975
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.18 Score=51.54 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC--------------
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV-------------- 72 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl-------------- 72 (586)
.+.+|+|+|+ |-+|...++.+...|. +|+++|+... |... . . .-+.+++..|.
T Consensus 183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~----~l~~---~-~---~lGa~~~~l~~~~~~~~gya~~~~~ 249 (381)
T 3p2y_A 183 KPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPE----VAEQ---V-R---SVGAQWLDLGIDAAGEGGYARELSE 249 (381)
T ss_dssp CCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGG----GHHH---H-H---HTTCEECCCC-------------CH
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHH----HHHH---H-H---HcCCeEEeccccccccccchhhhhH
Confidence 4579999987 9999999999999995 8999776542 1000 0 0 01122222110
Q ss_pred ----CCHHHHHHHhcCCCEEEEcccC
Q 007866 73 ----RDISQIKKVLEGASTVFYVDAT 94 (586)
Q Consensus 73 ----~d~~~l~~~l~~~D~Vih~aa~ 94 (586)
.+.+.+.+++.++|+||.++..
T Consensus 250 ~~~~~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 250 AERAQQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHhhhHHHHHHHHhcCCEEEECCCC
Confidence 1245678889999999988644
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=0.11 Score=53.88 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|.|+ |-+|+.+++.|...|..+|+++|+. +++. .+...+ +... .+. +++.+.+.+
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~--------~~ra~~la~~~---g~~~--~~~---~~l~~~l~~ 227 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRT--------YERAVELARDL---GGEA--VRF---DELVDHLAR 227 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSS--------HHHHHHHHHHH---TCEE--CCG---GGHHHHHHT
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCC--------HHHHHHHHHHc---CCce--ecH---HhHHHHhcC
Confidence 35789999997 9999999999999995489995543 2210 011111 1221 222 345667789
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||.+.+..
T Consensus 228 aDvVi~at~~~ 238 (404)
T 1gpj_A 228 SDVVVSATAAP 238 (404)
T ss_dssp CSEEEECCSSS
T ss_pred CCEEEEccCCC
Confidence 99999997654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.063 Score=54.96 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC--HHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d--~~~l~~~l~~~ 85 (586)
+.+|+|+|| |-+|..+++.+...|. +|++.|.... ..++..+.. .-+...+ | .+ .+.+.+.-.++
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~-----~~~~~~~~~---~~ga~~v--~-~~~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREP-----TEVEQTVIE---ETKTNYY--N-SSNGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCC-----CHHHHHHHH---HHTCEEE--E-CTTCSHHHHHHHCCE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCcc-----chHHHHHHH---HhCCcee--c-hHHHHHHHHHhCCCC
Confidence 789999999 9999999999999995 9999554320 001111111 1123443 4 43 22333311579
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||++++.
T Consensus 248 d~vid~~g~ 256 (366)
T 2cdc_A 248 DVIIDATGA 256 (366)
T ss_dssp EEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999976
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.33 Score=48.78 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCCC--CCCCCC--------C--CCCCeE--EEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSESN--SLLPDS--------L--SSGRAE--YHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~~--~~~~~~--------l--~~~~~~--~~~~D 71 (586)
..+|+|.|+ |-+|+++++.|...|.-+++++|.+. ..++.|+.-. ...... + ..+.++ .+..+
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578999965 89999999999999977899988765 2234443210 000000 0 013333 33333
Q ss_pred C--------------CCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 72 V--------------RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 72 l--------------~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
+ .+.+.+.+.++++|+||.+.... +.- ..+-++|.++++ .+|..
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~------~tR--------~lin~~c~~~~~-plI~a 170 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR------ESR--------WLPSLLSNIENK-TVINA 170 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSST------GGG--------HHHHHHHHHTTC-EEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCH------HHH--------HHHHHHHHHcCC-cEEEe
Confidence 3 13455677888999999986432 111 124568888886 56654
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=0.73 Score=45.60 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.|+||-+. |.|..|..+++.|++.|| +|+++|+.++. ..+-...+ ...... .....+.+..=+.|.+++++++.
T Consensus 2 ~M~kIgfI-GlG~MG~~mA~~L~~~G~-~v~v~dr~~~~-~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 2 HMKQIAFI-GLGHMGAPMATNLLKAGY-LLNVFDLVQSA-VDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp -CCEEEEE-CCSTTHHHHHHHHHHTTC-EEEEECSSHHH-HHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred CcCEEEEe-eehHHHHHHHHHHHhCCC-eEEEEcCCHHH-HHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHh
Confidence 46899999 579999999999999995 99997765431 00000000 000000 01234566666777787777764
Q ss_pred CC----------CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 84 GA----------STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 84 ~~----------D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
+. ++||++.... | ..++.+.+.+.+.|+ +|+
T Consensus 79 ~~~g~~~~~~~g~iiId~sT~~-----p--------~~~~~~a~~~~~~G~-~~l 119 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLECSTIA-----P--------TSARKIHAAARERGL-AML 119 (300)
T ss_dssp SSSSSTTSCCC-CEEEECSCCC-----H--------HHHHHHHHHHHTTTC-EEE
T ss_pred chhhhhhcCCCCCEEEECCCCC-----H--------HHHHHHHHHHHHcCC-EEE
Confidence 32 5677766442 3 335567788888886 454
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.46 Score=47.73 Aligned_cols=32 Identities=16% Similarity=0.086 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
|+||.|.|+ |++|+.+++.|.++++.+|.+++
T Consensus 1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain 32 (334)
T 3cmc_O 1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVN 32 (334)
T ss_dssp CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEe
Confidence 468999999 99999999999988656776543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.33 Score=49.97 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
.+++|+|+|+ |-+|...++.+...|. +|+++|+..
T Consensus 171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRA 205 (384)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 4689999985 9999999999999995 899976643
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.10 E-value=0.092 Score=52.42 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
..||+|.|.| .|.+|..+++.|.+.|+ +|+++|+..
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNGF-KVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 4578999995 69999999999999995 999966543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=89.96 E-value=0.46 Score=46.10 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=45.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++++|.|++|.+|+.++..|+++|. +|+++ .+.. ..+.+.+..+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~--------~~~t------------------------~~L~~~~~~A 194 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVC--------HSKT------------------------KDIGSMTRSS 194 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEE--------CTTC------------------------SCHHHHHHHS
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEE--------eCCc------------------------ccHHHhhccC
Confidence 3579999999999999999999999995 88883 3211 1245677889
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||...+..
T Consensus 195 DIVI~Avg~p 204 (276)
T 3ngx_A 195 KIVVVAVGRP 204 (276)
T ss_dssp SEEEECSSCT
T ss_pred CEEEECCCCC
Confidence 9999988764
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.8 Score=45.63 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|.|.| .|-||+.+++.|...| .+|.++|+.. .. ..++.... ..++++++++++
T Consensus 137 l~g~tvGIiG-~G~IG~~vA~~l~~~G-~~V~~~dr~~--------~~--------~~~~~~~~----~~~~l~ell~~a 194 (315)
T 3pp8_A 137 REEFSVGIMG-AGVLGAKVAESLQAWG-FPLRCWSRSR--------KS--------WPGVESYV----GREELRAFLNQT 194 (315)
T ss_dssp STTCCEEEEC-CSHHHHHHHHHHHTTT-CCEEEEESSC--------CC--------CTTCEEEE----SHHHHHHHHHTC
T ss_pred cCCCEEEEEe-eCHHHHHHHHHHHHCC-CEEEEEcCCc--------hh--------hhhhhhhc----ccCCHHHHHhhC
Confidence 4578999995 6999999999999999 4999966532 11 01222221 236788899999
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+|+.+....
T Consensus 195 DiV~l~~Plt 204 (315)
T 3pp8_A 195 RVLINLLPNT 204 (315)
T ss_dssp SEEEECCCCC
T ss_pred CEEEEecCCc
Confidence 9999877543
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=89.86 E-value=3.2 Score=40.85 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
.+||-+. |.|..|..+++.|++.|| +|+++|+.+
T Consensus 5 s~kIgfI-GLG~MG~~mA~~L~~~G~-~V~v~dr~~ 38 (297)
T 4gbj_A 5 SEKIAFL-GLGNLGTPIAEILLEAGY-ELVVWNRTA 38 (297)
T ss_dssp CCEEEEE-CCSTTHHHHHHHHHHTTC-EEEEC----
T ss_pred CCcEEEE-ecHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 4589999 579999999999999994 999977654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.84 E-value=0.14 Score=52.39 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+.+|||+|+ |-+|...++.+...|. +|++.|... ++..+...+ +... ..|..+.+.+.++..++|
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga-~Vi~~~~~~--------~~~~~a~~l---Ga~~-vi~~~~~~~~~~~~~g~D 259 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSE--------AKREAAKAL---GADE-VVNSRNADEMAAHLKSFD 259 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSG--------GGHHHHHHH---TCSE-EEETTCHHHHHTTTTCEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCH--------HHHHHHHHc---CCcE-EeccccHHHHHHhhcCCC
Confidence 4679999998 8899999999999995 788855432 211111111 1221 245566655555556899
Q ss_pred EEEEcccC
Q 007866 87 TVFYVDAT 94 (586)
Q Consensus 87 ~Vih~aa~ 94 (586)
+||++++.
T Consensus 260 vvid~~g~ 267 (369)
T 1uuf_A 260 FILNTVAA 267 (369)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 99999876
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.71 E-value=0.095 Score=53.45 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH-HHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-~~l~~~l~~~ 85 (586)
.+.+|||+|+ |-+|...++.+...|. +|++.|.. +++..+...+ +... ..|..+. +...++..++
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga-~Vi~~~~~--------~~~~~~~~~l---Ga~~-v~~~~~~~~~~~~~~~~~ 244 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRS--------SRKREDAMKM---GADH-YIATLEEGDWGEKYFDTF 244 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESS--------STTHHHHHHH---TCSE-EEEGGGTSCHHHHSCSCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCC--------HHHHHHHHHc---CCCE-EEcCcCchHHHHHhhcCC
Confidence 4679999999 9999999999999995 89885543 2211111111 1111 1233333 3233333579
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||++++.
T Consensus 245 D~vid~~g~ 253 (360)
T 1piw_A 245 DLIVVCASS 253 (360)
T ss_dssp EEEEECCSC
T ss_pred CEEEECCCC
Confidence 999999986
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=0.87 Score=44.76 Aligned_cols=89 Identities=8% Similarity=0.077 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEE-EecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVR-VTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~-~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..++|.|.|+||.+|+..++.+.+.| +++. .+| +..... + ..++.. .-| +.++.+
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g-~~~V~~V~--------p~~~g~---~---~~G~~v-y~s------l~el~~~~ 63 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYG-TKMVGGVT--------PGKGGT---T---HLGLPV-FNT------VREAVAAT 63 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEEC--------TTCTTC---E---ETTEEE-ESS------HHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeC--------CCcccc---e---eCCeec-cCC------HHHHhhcC
Confidence 35799999999999999999999988 4644 422 211000 0 012222 222 334444
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
++|+++-+.... . ...+++.|.+.|++-+|-+++
T Consensus 64 ~~D~viI~tP~~-------~--------~~~~~~ea~~~Gi~~iVi~t~ 97 (288)
T 2nu8_A 64 GATASVIYVPAP-------F--------CKDSILEAIDAGIKLIITITE 97 (288)
T ss_dssp CCCEEEECCCGG-------G--------HHHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEecCHH-------H--------HHHHHHHHHHCCCCEEEEECC
Confidence 799999876331 1 334777888899976665444
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.71 E-value=0.24 Score=48.77 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
..+++++|||++ -+|+.++..|.+.| +|++.|+
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r 158 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKDN--NIIIANR 158 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECS
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHCC--CEEEEEC
Confidence 356899999985 99999999999999 8888444
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=3.8 Score=40.50 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCeEEEE-cCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 8 PRTCVVL-NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 8 ~~~IlVT-GatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
.+++.|. |+||-.|+.+++.|++.| +++.. +.+ +..... +. .++..+ -+ +.++.+ +
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G-~~~v~-~Vn------P~~~g~---~i---~G~~vy-~s------l~el~~~~~ 71 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYG-TNLVG-GTT------PGKGGK---TH---LGLPVF-NT------VKEAKEQTG 71 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEE-EEC------TTCTTC---EE---TTEEEE-SS------HHHHHHHHC
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCC-CcEEE-EeC------CCcCcc---eE---CCeeee-ch------HHHhhhcCC
Confidence 4566666 999999999999999999 56442 222 111000 00 122322 22 233334 7
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
+|+++-+... .....+++.|.+.|++.++.+++
T Consensus 72 vD~avI~vP~---------------~~~~~~~~e~i~~Gi~~iv~~t~ 104 (305)
T 2fp4_A 72 ATASVIYVPP---------------PFAAAAINEAIDAEVPLVVCITE 104 (305)
T ss_dssp CCEEEECCCH---------------HHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEecCH---------------HHHHHHHHHHHHCCCCEEEEECC
Confidence 9999876422 12345778888899988665554
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.068 Score=52.66 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
||+|.|.| .|.+|..+++.|.+.|+ +|+++|+.
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~-~V~~~dr~ 33 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGF-DVTVWNRN 33 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 46899996 79999999999999995 99996554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 586 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-31 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-30 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 4e-28 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-27 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-22 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 6e-22 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 5e-21 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 3e-20 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-17 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 3e-17 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-16 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-14 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 9e-14 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 6e-12 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 4e-11 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 7e-11 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 1e-10 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 2e-10 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 2e-10 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-10 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 8e-10 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 4e-08 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-07 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 4e-07 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 4e-05 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 0.004 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 122 bits (307), Expect = 3e-31
Identities = 67/364 (18%), Positives = 119/364 (32%), Gaps = 56/364 (15%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ G GF+G ++V +++ + V D L + + L D S R + D+
Sbjct: 5 ITGGAGFIGSAVVRHIIKNTQDTVVNIDK-----LTYAGNLESLSDISESNRYNFEHADI 59
Query: 73 RDISQIKKVLEGAS--TVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC----- 122
D ++I ++ E V ++ A D + + G ++ R+
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 123 ----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL------KAQAEALVL 172
R + ST +V D H + + KA ++ LV
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 173 FANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
GL T SN +GP +L+PL++ A G I G G+ + D+ YVE+
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWY 290
A A AG + I K D + I + + T
Sbjct: 240 ARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICD---LLDEIVPKATSYREQ 290
Query: 291 IILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSST 350
I + R D + +G+ P+ + E G+ T
Sbjct: 291 ITYVADRPGH--------------------DRRYAIDAGKISRELGWKPLETFESGIRKT 330
Query: 351 IQSF 354
++ +
Sbjct: 331 VEWY 334
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 119 bits (300), Expect = 1e-30
Identities = 64/347 (18%), Positives = 121/347 (34%), Gaps = 45/347 (12%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
V G GF+G V +LL V + L + + + L + R + D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 73 RDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
RD + + L G + + D + VQG + ++ + V R+V+
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVH 124
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
ST V GS D + E+ + KA ++ + + GL R N
Sbjct: 125 VSTNQV--YGSIDSGSWTESSPL--EPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCN 180
Query: 190 VFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVS 247
+GP +L+PL V G T + G G N+ ++ + ++
Sbjct: 181 NYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR----- 235
Query: 248 VAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307
AG + I + + I+L+ LG + + + ++ G
Sbjct: 236 -AGEIYHIGGGLELTNRELTGILLDSLGADWSSV--------------RKVADRKG---- 276
Query: 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ D ++ +GY P VS +G++ T++ +
Sbjct: 277 ------------HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 4e-28
Identities = 50/358 (13%), Positives = 106/358 (29%), Gaps = 26/358 (7%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G V S + + + H D+ D
Sbjct: 9 VTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDT 67
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
S + ++L + + ++ + + G ++ A R + R
Sbjct: 68 SNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRF 127
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A + + G+ C
Sbjct: 128 YQASTSELY--GLVQEIPQKETTPF--YPRSPYAVAKLYAYWITVNYRESYGMYACNGIL 183
Query: 188 SNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + N+A+ + +G+ +++ D+ + ++ +
Sbjct: 184 FNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQ-- 241
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
F I F+ + LG + F ++ +
Sbjct: 242 -----QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
+ ++ Y T D A + +G+ P ++L E VS + + A+
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 1e-27
Identities = 61/357 (17%), Positives = 113/357 (31%), Gaps = 73/357 (20%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE------ 66
+ G GFVG L +L+ G + V D+ +GR
Sbjct: 6 ITGGAGFVGSHLTDKLMMDGHEVTVV-------------------DNFFTGRKRNVEHWI 46
Query: 67 -YHQVDVRDISQIKKVLEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACREC 122
+ ++ + ++ + ++++ + + G N++ +
Sbjct: 47 GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 106
Query: 123 KVRRLVYNSTADVVFDGS-HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
R L+ ST++V D H + + K AE + +G+
Sbjct: 107 GAR-LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVE 165
Query: 182 TCALRPSNVFGPG----DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N FGP D ++V + A G + GSG F YV ++ + V
Sbjct: 166 VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ S + N E +F +I +G +++
Sbjct: 226 MNSNVSS-------PVNLGNPEEHTILEFAQLIKNLVGSGSE---------------IQF 263
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ E + R D A+ +G+ PVV LEEG++ I F
Sbjct: 264 LSEAQD----------------DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 304
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 97.0 bits (240), Expect = 1e-22
Identities = 68/354 (19%), Positives = 118/354 (33%), Gaps = 44/354 (12%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+ ++ GF+G +L+ LL+L + +V + + Q + E SL+ + S ++
Sbjct: 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKF 74
Query: 68 HQVDVR---DISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q D+R D + ++ + + + +D + G N++ A R+ KV
Sbjct: 75 IQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKV 134
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ Y +++ G H E K K E + G T
Sbjct: 135 QSFTYAASSSTY--GDHPGLPKVED--TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIG 190
Query: 185 LRPSNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238
LR NVFG ++P + G +I G GE DF Y+EN A++ AA
Sbjct: 191 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 250
Query: 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298
A V + I + +GL +
Sbjct: 251 TAGLDARNQV----YNIAVGGRTSLNQLFFALRDGLAENGVSYHRE------PVYRDFRE 300
Query: 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
+ R D A K +GY+P + GV+ +
Sbjct: 301 GD--------------------VRHSLADISKAAKLLGYAPKYDVSAGVALAMP 334
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 95.4 bits (236), Expect = 6e-22
Identities = 66/397 (16%), Positives = 120/397 (30%), Gaps = 75/397 (18%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ GF+ + RL G V +D ++ + E+H VD
Sbjct: 19 SITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTEDMFC-----------DEFHLVD 66
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIV----QGAKNVVTACRECKVRRL 127
+R + KV EG VF + A + + +I+ + N++ A R ++R
Sbjct: 67 LRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRF 126
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCW---KFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
Y S+A + + + QD K E L N G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 185 LRPSNVFGPGDT-------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
R N++GP T + G G FT+++ +
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL 246
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLV 295
+ S I + E + + ++L + P I P GV
Sbjct: 247 TK-------SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGV-------- 291
Query: 296 KWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF- 354
R R D ++ +G++P + L+EG+ T
Sbjct: 292 --------------------------RGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIK 325
Query: 355 SHLARDSSL-----AYSRDFNEQSKVEKLLGGGKVAD 386
+ ++ + Y ++ LG + AD
Sbjct: 326 EQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAAD 362
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.7 bits (229), Expect = 5e-21
Identities = 47/359 (13%), Positives = 100/359 (27%), Gaps = 35/359 (9%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LLE G + + + S E P + G + H D+ D
Sbjct: 9 ITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDS 68
Query: 76 SQIKKVLEGA-----STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR---RL 127
+ + K++ + ++ D + G ++ A + C + +
Sbjct: 69 TCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKF 128
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
ST+++ G ET + K A +V+ L
Sbjct: 129 YQASTSELY--GKVQEIPQKETTPF--YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGIL 184
Query: 188 SNVFGPGD------TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
N P ++ + + F +G+ + D+ + ++ A +
Sbjct: 185 FNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQND 244
Query: 242 DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEK 301
+ +A K + + + G + + +
Sbjct: 245 EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDL----- 299
Query: 302 LGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360
Y DC A++ + + P V+ +E V + + L R
Sbjct: 300 ------------KYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 346
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 89.7 bits (221), Expect = 3e-20
Identities = 45/357 (12%), Positives = 99/357 (27%), Gaps = 54/357 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
R+ +V G G L LLE G V + S++ L + G +Y
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVA-----RRSSDTRWRLRELGIEGDIQYE 54
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNC-----YMIIVQGAKNVVTACRECK 123
D+ D +++ + A + + ++ G +++ A R+
Sbjct: 55 DGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS 114
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
Y ++ +F G DE + K + + GL
Sbjct: 115 PETRFYQASTSEMF-GLIQAERQDENTPFYP--RSPYGVAKLYGHWITVNYRESFGLHAS 171
Query: 184 ALRPSNVFGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237
+ N P ++ + + + +G+ + D+ + + A
Sbjct: 172 SGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLM 231
Query: 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297
+ + VA ++ + + P P V +
Sbjct: 232 LQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLG----- 286
Query: 298 IHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ AQ+ +G+ P SL+E + +++
Sbjct: 287 -----------------------------NPAKAQRVLGWKPRTSLDELIRMMVEAD 314
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 81.2 bits (199), Expect = 2e-17
Identities = 52/358 (14%), Positives = 99/358 (27%), Gaps = 59/358 (16%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G ++LL+ G ++ + + S S + + L + + D+R+
Sbjct: 8 GSGYIGSHTCVQLLQNGHDVIILDNLCNS-----KRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 76 SQIKKVLE--GASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
+ + ++L TV + + Y V G +++A R V+ +++
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
S+A V D E+ + L LR N
Sbjct: 123 SSATVYGD--QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 191 FGPGD------------TQLVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHVCA 237
G L+P + +A I G+ D T V + H A
Sbjct: 181 VGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLA 240
Query: 238 AEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ + I NL D ++ + G + P
Sbjct: 241 DGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP---------- 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
R D A + + + +L+E T
Sbjct: 291 ----------RREGD-----------LPAYWADASKADRELNWRVTRTLDEMAQDTWH 327
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.9 bits (198), Expect = 3e-17
Identities = 43/355 (12%), Positives = 92/355 (25%), Gaps = 45/355 (12%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G L LL G + + + + + P +++ + H D+ D
Sbjct: 9 ITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDA 68
Query: 76 SQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
S +++ ++ ++ + ++ GA ++ A R +
Sbjct: 69 SSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTV 128
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNV 190
++ T + + K A + GL C N
Sbjct: 129 KYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNH 188
Query: 191 FGPG------DTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
P ++ L + TK +G+ + D+ + + A +
Sbjct: 189 ESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPD 248
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304
VA + +L + + P V
Sbjct: 249 DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQG------------ 296
Query: 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359
D A++ +G+ P V E+ V + LA+
Sbjct: 297 ----------------------DASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK 329
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (191), Expect = 2e-16
Identities = 46/363 (12%), Positives = 100/363 (27%), Gaps = 79/363 (21%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV 72
+ RG VG ++ +L + G + V + ++++
Sbjct: 7 IAGHRGMVGSAIRRQLEQRG-DVELVLRT-------------------------RDELNL 40
Query: 73 RDISQIKKVLEGAST------VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
D + V N + + N++ A + V +
Sbjct: 41 LDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 100
Query: 127 LVYNSTADVVFD-GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCAL 185
L++ ++ + + + + K L N G ++
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 186 RPSNVFGPGDTQLVPLLVNLAKPGWTKF-----------IIGSGENMSDFTYVENVAHAH 234
P+N++GP D + + GSG M +F +V+++A A
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 235 VCAAEALDSRMVSVAGMAFFITNL---EPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYI 291
+ E + N+ + I + +GY+ + +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------ 274
Query: 292 ILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
+ R + +G+ +SLE G++ST
Sbjct: 275 --------------------------KPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTY 308
Query: 352 QSF 354
Q F
Sbjct: 309 QWF 311
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.2 bits (178), Expect = 1e-14
Identities = 50/364 (13%), Positives = 107/364 (29%), Gaps = 63/364 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G G++G V+ L+E G V + + S + + + L+ +++VD+ D
Sbjct: 9 GAGYIGSHTVVELIENGYDCVVADNLSNS-----TYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 76 SQIKKV--LEGASTVFYVDA---TDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130
++KV +V + +T Y + G ++ ++ V + V++
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID--GLLTCALRPS 188
S+A V D + + C + K E ++ N D LR
Sbjct: 124 SSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYF 183
Query: 189 NV--------FGPGDTQ----LVPLLVNLAKPGWTKFII-GSGENMSDFTYVENVAHAHV 235
N G L+P + +A K I G + D T + + H
Sbjct: 184 NPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVD 243
Query: 236 CAAEALDSRM-------VSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVV 288
A + + + + + + ++ + G P+
Sbjct: 244 LAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTG---- 299
Query: 289 WYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVS 348
R T A++ + + + +E+
Sbjct: 300 ----------------RRAGD-----------VLNLTAKPDRAKRELKWQTELQVEDSCK 332
Query: 349 STIQ 352
+
Sbjct: 333 DLWK 336
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 70.4 bits (171), Expect = 9e-14
Identities = 55/357 (15%), Positives = 104/357 (29%), Gaps = 62/357 (17%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G + V + V VT L N +++ R E D+ D
Sbjct: 10 GAGFIGSNFVHYVYNNHP-DVHVT----VLDKLTYAGNKANLEAILGDRVELVVGDIADA 64
Query: 76 SQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR------ 126
+ K+ A + + D + +D G ++ A R+ +R
Sbjct: 65 ELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTD 124
Query: 127 -LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCAL 185
+ + G + T + KA ++ +V G+
Sbjct: 125 EVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATIS 184
Query: 186 RPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243
SN +GP + +P + G + G G+N+ D+ + + +
Sbjct: 185 NCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAI------ 238
Query: 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL----PTGVVWYIILLVKWIH 299
G + I + L +ILE +G + + Y I
Sbjct: 239 LTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI------- 291
Query: 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSP-VVSLEEGVSSTIQSFS 355
D + +G++P EG+ TIQ ++
Sbjct: 292 ---------------------------DASKLRDELGWTPQFTDFSEGLEETIQWYT 321
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (157), Expect = 6e-12
Identities = 44/366 (12%), Positives = 105/366 (28%), Gaps = 63/366 (17%)
Query: 13 VLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVD 71
V G G++G VL LLE G V + + + + S SL L+ E+ ++D
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMD 66
Query: 72 VRDISQIKKVLEGASTVFY-----VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126
+ D ++++ + S + + A + + Y + + G ++ + V+
Sbjct: 67 ILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK- 125
Query: 127 LVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVL-FANNIDGLLTCAL 185
+ + + + + K E ++ L
Sbjct: 126 --NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 186 RPSNVFGPGD------------TQLVPLLVNLA-------KPGWTKFIIGSGENMSDFTY 226
R N G L+P + +A + G + D+ +
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIH 243
Query: 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286
V ++A H+ A + + + + + G + P+ +
Sbjct: 244 VVDLAKGHIAAL---RKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA-- 298
Query: 287 VVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEG 346
+ + + AQ+ +G++ + L+
Sbjct: 299 ---------RREGD--------------------VAACYANPSLAQEELGWTAALGLDRM 329
Query: 347 VSSTIQ 352
+
Sbjct: 330 CEDLWR 335
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 62.7 bits (150), Expect = 4e-11
Identities = 40/360 (11%), Positives = 88/360 (24%), Gaps = 46/360 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
++L GF+G L RLL V D + + L+ + + D
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDI----------GSDAISRFLNHPHFHFVEGD 53
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ S+ + V ++ + + + V+
Sbjct: 54 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 113
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDL------MCDLKAQAEALVLFANNIDGLLTCAL 185
+ + K + ++ +GL
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 186 ----------RPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHV 235
N G ++ + L+ G +I G+ FT + + A
Sbjct: 174 RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 233
Query: 236 CAAEALDSRMVSVAGMAFFITNLEP-IKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
E + G I N E + ++L P + ++
Sbjct: 234 RIIE---NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 290
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
+ + R A + + + P + ++E + T+ F
Sbjct: 291 SSYYGKGYQD----------------VEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 61.7 bits (148), Expect = 7e-11
Identities = 58/368 (15%), Positives = 109/368 (29%), Gaps = 73/368 (19%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI 75
G GF+G +L L G + V D+ L + L S G E+ D+R+
Sbjct: 8 GCGFLGSNLASFALSQG-IDLIVFDN-----LSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 76 SQIKKVLEGAS-----TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE-CKVRRLVY 129
+ + +++ + A + D+ + I V G N++ A R+ ++Y
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 130 NSTADVVFDGSHDIHN------------GDETLTCCWKFQDLMCDLKAQAEALVLFANNI 177
+ST V D +N + F K A+ +L I
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 178 DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTK----------FIIGSGENMSDFTYV 227
GL T R S+++G I G+G+ + D +
Sbjct: 182 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241
Query: 228 ENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL---P 284
E++ + A + + T + + + ++ + F L
Sbjct: 242 EDMISLYFTALANVSK--IRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE 299
Query: 285 TGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLE 344
+ ++ D I +SP VS +
Sbjct: 300 SDQRVFVA----------------------------------DIKKITNAIDWSPKVSAK 325
Query: 345 EGVSSTIQ 352
+GV
Sbjct: 326 DGVQKMYD 333
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 26/274 (9%), Positives = 70/274 (25%), Gaps = 30/274 (10%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G G++G+ +V + LG + +D + A+ +
Sbjct: 7 LIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEAS 62
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D ++ L+ V + +V A +E + S
Sbjct: 63 LDDHQRLVDALKQVDVVISA--------LAGGVLSHHILEQLKLVEAIKEAGNIKRFLPS 114
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+ D + + + +
Sbjct: 115 EFGMDPDIMEHALQPGSITFIDKRKVRRAI--------------EAASIPYTYVSSNMFA 160
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G L L ++ P I G G + ++V + + + + ++
Sbjct: 161 GYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTM--- 217
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285
+ + + + + I I + +
Sbjct: 218 -YIRPPMNILSQKEVIQIWERLSEQNLDKIYISS 250
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 60.8 bits (146), Expect = 2e-10
Identities = 29/285 (10%), Positives = 69/285 (24%), Gaps = 43/285 (15%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA 65
+T V+ G G SL+ +G + V + +L +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL------------QAIPNV 51
Query: 66 EYHQVDVRD-ISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
Q + + + + + EGA F + + K++ A +
Sbjct: 52 TLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ---------AGDEIAIGKDLADAAKRAGT 102
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ S+ + L + ++ NN L
Sbjct: 103 IQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPL 162
Query: 185 LRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSR 244
+ + P + +V A + + +
Sbjct: 163 FQMELMPDGTFEWHAP--------------FDPDIPLPWLDAEHDVGPALLQIFKDGPQK 208
Query: 245 MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVW 289
G +T E + + L + ++++P +
Sbjct: 209 ---WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVEIK 249
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 43/375 (11%), Positives = 95/375 (25%), Gaps = 65/375 (17%)
Query: 4 DEAIPRTCVVL--NGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLS 61
+ +P +VL GFV +V +LLE G VR T + S +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSAS---KLANLQKRWDAKYP 60
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
D+ +V++GA+ V ++ + ++ + + G N + A
Sbjct: 61 GRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAA 120
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-----------------K 164
+ +++ V G W + + K
Sbjct: 121 TPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASK 180
Query: 165 AQAEALVLFANNIDGLLTCALRPS------NVFGPGDTQLVPLLVNLAKPGWTKFIIGSG 218
+AE + + +F P ++ +
Sbjct: 181 TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALAL 240
Query: 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR 278
+ ++ H+ ++ + L+ +
Sbjct: 241 MPPQYYVSAVDIGLLHLGC------LVLPQIERRRVYGTAGTFDWNTVLATFRK----LY 290
Query: 279 PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYS 338
P P + + L ++ + S + K +G
Sbjct: 291 PSKTFPA----------DFPDQGQDLSKFDTAPS----------------LEILKSLGRP 324
Query: 339 PVVSLEEGVSSTIQS 353
S+EE + + S
Sbjct: 325 GWRSIEESIKDLVGS 339
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 53/395 (13%), Positives = 104/395 (26%), Gaps = 92/395 (23%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDS------------TQSLQLDPSESNSLLPDSLSSG 63
G G++G V LL V + DS T+ + + +
Sbjct: 10 GAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADR 69
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECK 123
A DVR+ + V + V + + NVV R +
Sbjct: 70 YAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQ 129
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA---------QAEALVLFA 174
L + + +++ + D+ AE ++
Sbjct: 130 AMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDC 189
Query: 175 NNIDGLLTCALRPSNVFG-----------PGDTQLVPLLVNLAKPGW------------- 210
G+ LR N G G T L+P+++
Sbjct: 190 AEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDAS 249
Query: 211 ---------TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL--- 258
T + G + D+ +V ++A AH+ A + ++ + F + NL
Sbjct: 250 TDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS 309
Query: 259 EPIKFWDFLSIILEGLGYQRP--FIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYI 316
+ + + + G+ P G Y++
Sbjct: 310 RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVA----------------------- 346
Query: 317 VQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTI 351
A++ +G+ P E + T
Sbjct: 347 ----------ASDKAREVLGWKPKYDTLEAIMETS 371
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 58.3 bits (139), Expect = 8e-10
Identities = 29/273 (10%), Positives = 81/273 (29%), Gaps = 35/273 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+++ G++GR + L+LG + + + ++ L +S + A
Sbjct: 7 LLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLL--ESFKASGANIVHGS 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
+ D + + + ++ V + ++ N++ A +E + + S
Sbjct: 64 IDDHASLVEAVKNVDVV------------ISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
D H + K + + +G+ + +
Sbjct: 112 EFGNDVDNVHAVEPAKSVFEVKAKVRRAIEA---------------EGIPYTYVSSNCFA 156
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGM 251
G + A P I+G G F E++ + A + ++
Sbjct: 157 GYFLRS-LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD----DPRTLNKT 211
Query: 252 AFFITNLEPIKFWDFLSIILEGLGYQRPFIKLP 284
+ + + +++ + + +P
Sbjct: 212 LYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 52.9 bits (125), Expect = 4e-08
Identities = 50/375 (13%), Positives = 94/375 (25%), Gaps = 51/375 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ V GF G L L L +G V+ L SL + + +
Sbjct: 9 KRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYS------LTAPTVPSLFETARVADGMQSE 61
Query: 69 QVDVRDISQIKKVLEGASTVFYVDATDLNTDDF-----YNCYMIIVQGAKNVVTACRECK 123
D+RD +++ + + Y V G ++ A R
Sbjct: 62 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 121
Query: 124 VRRL-------VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
+ + ++ + G K + +
Sbjct: 122 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 181
Query: 177 IDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
G +R NV G GD + + A II + + + +V +
Sbjct: 182 QHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGY 241
Query: 235 VCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILL 294
+ A+ L + A F N +K + +
Sbjct: 242 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKN---------IVEQMVKYWGEGASWQLDG 292
Query: 295 VKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
HE + DC A+ +G+ P +L + +
Sbjct: 293 NAHPHE--------------------AHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWH 332
Query: 355 -SHLARDSSLAYSRD 368
+ L+ YS
Sbjct: 333 KNWLSGTDMHEYSIT 347
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 44/228 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+ G G + + + ++ G V V S A D
Sbjct: 7 AIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSEGPRP-----------AHVVVGD 54
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131
V + + K + G V + L T + + ++ +GA+N+V A + V ++V +
Sbjct: 55 VLQAADVDKTVAGQDAVIVL----LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 132 TADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVF 191
+A +++D + + Q + D + L GL A+ P ++
Sbjct: 111 SAFLLWDPTKV----------PPRLQAVTDDHIRMHKVL-----RESGLKYVAVMPPHIG 155
Query: 192 GPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
T + G S ++ H +
Sbjct: 156 DQPLTGAY-------------TVTLDGRGPSRVISKHDLGHFMLRCLT 190
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.0 bits (117), Expect = 4e-07
Identities = 41/356 (11%), Positives = 85/356 (23%), Gaps = 21/356 (5%)
Query: 16 GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-----------LSSGR 64
G G+ G + L L + + V + + L SL P + L+
Sbjct: 9 GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKS 68
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDAT--------DLNTDDFYNCYMIIVQGAKNVV 116
E + D+ D + + + V ++ V G NV+
Sbjct: 69 IELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVL 128
Query: 117 TACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
A +E + + + D + K + L +
Sbjct: 129 FAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVH 188
Query: 177 IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236
+ + + Q V V + + + + + F N
Sbjct: 189 DSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAA 248
Query: 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVK 296
L + ++ + ++ V + LV
Sbjct: 249 VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVT 308
Query: 297 WIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQ 352
KLGL ++ A +G P + + S +
Sbjct: 309 KAGSKLGLDVKKMTVPNPR--VEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLN 362
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 21/252 (8%), Positives = 47/252 (18%), Gaps = 23/252 (9%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
T +V G G+ + +L E + + ++
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLVR----SAQGKEKIGGEADVFIGDITDA 59
Query: 70 VDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129
+ Q L ++ + I G K +
Sbjct: 60 DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 119
Query: 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSN 189
+ + + + G +R
Sbjct: 120 KVAGVKHIVVVGSMGGTNPDHPLNKLGNGNIL----VWKRKAEQYLADSGTPYTIIRAGG 175
Query: 190 VFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVA 249
+ LLV + +VA + A ++
Sbjct: 176 LLDKEGGV-RELLVGKDDELLQ--------TDTKTVPRADVAEVCIQALLFEEA-----K 221
Query: 250 GMAFFITNLEPI 261
AF + +
Sbjct: 222 NKAFDLGSKPEG 233
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.7 bits (83), Expect = 0.004
Identities = 23/232 (9%), Positives = 44/232 (18%), Gaps = 42/232 (18%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+ ++ G G L+ R+L
Sbjct: 2 PKRVLLAGATGLTGEHLLDRILSEP----------------------------------- 26
Query: 68 HQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRL 127
V ++ +L + + A E R +
Sbjct: 27 TLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAV 86
Query: 128 VYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRP 187
++ V ++ L RP
Sbjct: 87 DFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARP 146
Query: 188 SNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
S +FGP + + + I ++A A A
Sbjct: 147 SLLFGPREEFRLAEI-------LAAPIARILPGKYHGIEACDLARALWRLAL 191
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 586 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.97 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.94 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.91 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.89 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.71 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.7 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.67 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.64 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.64 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.63 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.63 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.63 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.62 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.6 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.6 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.6 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.6 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.59 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.59 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.59 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.59 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.58 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.57 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.57 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.57 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.57 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.57 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.57 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.56 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.56 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.56 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.56 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.56 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.55 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.55 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.55 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.54 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.54 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.53 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.51 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.51 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.49 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.49 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.48 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.48 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.47 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.47 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.47 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.46 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.45 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.44 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.44 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.43 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.43 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.38 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.37 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.37 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.37 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.36 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.28 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.2 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.18 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.18 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.13 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.1 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.1 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.03 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 98.94 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.88 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.5 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.89 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.76 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.69 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.51 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.51 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.43 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.3 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.27 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.2 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.16 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.15 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.11 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.06 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.03 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.01 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.92 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.85 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.84 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.78 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.71 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.7 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.68 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.65 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.57 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.32 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.27 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.26 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.12 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.08 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.04 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.01 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.01 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.99 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.85 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.71 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.6 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.52 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.47 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.28 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.28 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.0 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.98 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.69 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.48 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.42 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.17 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.04 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 93.84 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.64 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.4 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.32 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.92 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.58 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.45 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.3 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 92.11 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.05 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.81 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 91.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.74 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.63 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.59 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.5 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.38 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 90.37 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 90.36 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.29 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.01 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.89 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 89.67 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 89.66 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 89.65 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.59 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 89.28 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 89.08 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 88.43 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.35 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 88.19 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 87.78 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.55 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.51 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 87.46 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.39 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.04 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 86.96 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 86.76 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.6 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 86.57 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.49 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 86.36 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.35 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 86.07 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 86.02 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.5 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.31 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.9 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 84.8 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 84.49 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.48 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.28 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.28 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.22 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 83.99 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.9 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 83.64 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.43 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 83.34 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.25 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 83.16 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 83.14 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 82.82 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 82.77 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.39 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 81.99 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 81.92 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 81.71 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.35 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 81.17 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 80.89 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 80.88 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.75 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.31 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.4e-45 Score=377.48 Aligned_cols=306 Identities=20% Similarity=0.231 Sum_probs=253.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCc-----EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKC-----IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~-----~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
|||||||||||||+++++.|+++|+. +++++|.... ... ...........+++++.+|+.+.........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~---~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 75 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY---AGN--RANLAPVDADPRLRFVHGDIRDAGLLARELR 75 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCT---TCC--GGGGGGGTTCTTEEEEECCTTCHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCc---ccc--HhHhhhhhcCCCeEEEEeccccchhhhcccc
Confidence 68999999999999999999999851 3566555321 111 1112222345689999999999999999999
Q ss_pred CCCEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 84 GASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 84 ~~D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
++|.|+|+|+.. ....++...+++|+.|+.|++++|++.++++|||+||+++||+.. ..+.+|+. +..|.++|
T Consensus 76 ~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~--~~~~~E~~--~~~p~~~Y 151 (322)
T d1r6da_ 76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID--SGSWTESS--PLEPNSPY 151 (322)
T ss_dssp TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS--SSCBCTTS--CCCCCSHH
T ss_pred ccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCC--CCCCCCCC--CCCCCCHH
Confidence 999999999886 235567888999999999999999999999999999999997543 34678887 45899999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAA 238 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~al 238 (586)
|.+|..+|.+++.++++++++++++||+++|||++. .+++.++.++.+|+++.++++|++.++|+|++|+|+++..++
T Consensus 152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~ 231 (322)
T d1r6da_ 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL 231 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence 999999999999999888999999999999999865 478999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHH
Q 007866 239 EALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQ 318 (586)
Q Consensus 239 e~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (586)
+. ...|++||+++++++++.|+++.+.+.+|.+.+.+... . +.+.
T Consensus 232 ~~------~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~------------------~----~~~~------- 276 (322)
T d1r6da_ 232 AG------GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKV------------------A----DRKG------- 276 (322)
T ss_dssp HH------CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEE------------------C----CCTT-------
T ss_pred hC------CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeec------------------C----CCCC-------
Confidence 83 34578999999999999999999999999775433211 0 0110
Q ss_pred HhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 319 LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 319 ~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
-.....+|++|+++.|||+|+++++|||+++++||+++..
T Consensus 277 -~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~~ 316 (322)
T d1r6da_ 277 -HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (322)
T ss_dssp -CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred -CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 0123567999999999999999999999999999998653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.8e-46 Score=387.00 Aligned_cols=315 Identities=21% Similarity=0.235 Sum_probs=249.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|||||||||||||++|+++|+++|++.|.++|.... ......+.......+++++++|++|.+.+.++++ ++|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-----AGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPD 75 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCT-----TCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc-----cccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCC
Confidence 689999999999999999999999766778776431 1111123344456789999999999999999887 489
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCC---------CCEEEEecCccccccCCCCC--------CCC
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECK---------VRRLVYNSTADVVFDGSHDI--------HNG 146 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~g---------vkr~I~~SS~~vyg~~~~~~--------~~~ 146 (586)
+||||||... ...+|..++++|+.||.|++++|++.+ +++|||+||..|||...... ...
T Consensus 76 ~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~ 155 (361)
T d1kewa_ 76 AVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF 155 (361)
T ss_dssp EEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred EEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCc
Confidence 9999999863 245778899999999999999998865 45999999999998654211 111
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
.|+. +..|.++||.+|..+|.+++.+++++|++++++||+++|||++. .+++.++..+.+|+++.++|+|++.|+|
T Consensus 156 ~e~~--~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~ 233 (361)
T d1kewa_ 156 TETT--AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (361)
T ss_dssp CTTS--CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEE
T ss_pred ccCC--CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeC
Confidence 2333 45889999999999999999999888999999999999999864 4788999999999998999999999999
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
+|++|+|+++..+++. ...+++|||++++++++.|+++.+.+.++...+....... . ...
T Consensus 234 i~v~D~a~ai~~~~~~------~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~-------------~-~~~ 293 (361)
T d1kewa_ 234 LYVEDHARALHMVVTE------GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYRE-------------Q-ITY 293 (361)
T ss_dssp EEHHHHHHHHHHHHHH------CCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGG-------------G-EEE
T ss_pred EEHHHHHHHHHHHHhc------CCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCccc-------------c-eee
Confidence 9999999999999982 3457899999999999999999998877543221110000 0 000
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
....|. ....+..|++|++++|||+|+++++|+|+++++||+++..
T Consensus 294 -~~~~~~--------~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 294 -VADRPG--------HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp -ECCCTT--------CCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred -cCCCCC--------CCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 001110 0124567999999999999999999999999999988744
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-44 Score=376.10 Aligned_cols=326 Identities=15% Similarity=0.088 Sum_probs=236.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--C
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--A 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~-~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~ 85 (586)
|++||||||||||++|+++|+++|+ +|+++|+..+. +..|-..- .........+++++.+|++|.+++.+++++ +
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRASSFNTERVDHI-YQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhhHHHH-HhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence 7899999999999999999999995 99997764321 01111000 000112345799999999999999999985 6
Q ss_pred CEEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCC---EEEEecCccccccCCCCCCCCCCCcccCCCCCCh
Q 007866 86 STVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR---RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDL 159 (586)
Q Consensus 86 D~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk---r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~ 159 (586)
|+|||+||.. .+..++..++++|+.||.||+++|++.+++ ||||+||++|||. ++..+.+|++| ..|.++
T Consensus 80 d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~--~~~~~~~E~~~--~~P~~~ 155 (357)
T d1db3a_ 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGL--VQEIPQKETTP--FYPRSP 155 (357)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTT--CCSSSBCTTSC--CCCCSH
T ss_pred CEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCC--CCCCCcCCCCC--CCCCCh
Confidence 9999999986 356789999999999999999999998654 7999999999974 33457899884 478999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----cHHHHHHHhcC-CCceEEEcCCCccccccchhHHHHH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----LVPLLVNLAKP-GWTKFIIGSGENMSDFTYVENVAHA 233 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-----~~~~l~~~~~~-g~~~~i~g~g~~~~~~i~v~Dva~a 233 (586)
|+.||..+|++++.++++++++++++||+++|||+... .+...+..... +.....+|+|++.++|+|++|+|++
T Consensus 156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a 235 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHH
Confidence 99999999999999998889999999999999996432 23333333334 4445677999999999999999999
Q ss_pred HHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCc
Q 007866 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSA 313 (586)
Q Consensus 234 i~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
+..+++ ...++.|||++++++|+.|+++.+.+.+|...+....+.... ...........+...
T Consensus 236 ~~~~~~-------~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 298 (357)
T d1db3a_ 236 QWMMLQ-------QEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEK----------GIVVSVTGHDAPGVK 298 (357)
T ss_dssp HHHTTS-------SSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCE----------EEEEEECSSSCTTCC
T ss_pred HHHHHh-------CCCCCeEEECCCCceehHHHHHHHHHHhCCcccccccccccc----------chhhhhhcccccccc
Confidence 998876 235679999999999999999999999985432211110000 000000000000000
Q ss_pred HHHH------HH----hccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 314 CYIV------QL----ASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 314 ~~~~------~~----~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
+... +. ......+|++|++++|||+|+++++|+|+++++++.+.
T Consensus 299 ~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~ 352 (357)
T d1db3a_ 299 PGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352 (357)
T ss_dssp TTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 0000 00 00123569999999999999999999999999876554
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-44 Score=368.07 Aligned_cols=299 Identities=21% Similarity=0.240 Sum_probs=240.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
.|||||||||||||++++++|+++| ++|+++|+... .+.. .........+++....|+.+ .++.++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~---~~~~---~~~~~~~~~~~d~~~~~~~~-----~~~~~~d~ 68 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFT---GRKR---NVEHWIGHENFELINHDVVE-----PLYIEVDQ 68 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS---CCGG---GTGGGTTCTTEEEEECCTTS-----CCCCCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCc---CCHH---HHHHhcCCCceEEEehHHHH-----HHHcCCCE
Confidence 3799999999999999999999999 59999876431 1111 11222334456666666643 35568999
Q ss_pred EEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcc---cCCCCCChHH
Q 007866 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMC 161 (586)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p---~~~~p~~~Y~ 161 (586)
|||+||... ...++...+++|+.|+.||+++|++.++ |+||+||++|||.... .+.+|+.. .+..|.++|+
T Consensus 69 VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~--~~~~e~~~~~~~~~~p~~~Y~ 145 (312)
T d2b69a1 69 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEV--HPQSEDYWGHVNPIGPRACYD 145 (312)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSS--SSBCTTCCCBCCSSSTTHHHH
T ss_pred EEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCC--CCCCccccCCCCCCCCccHHH
Confidence 999999762 3567889999999999999999999997 8999999999975432 34444332 2457889999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHH
Q 007866 162 DLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
.||..+|.+++.+++++|++++++||+++|||++. .+++.++..+.+|+++.++++|.+.++|+|++|+++++..+
T Consensus 146 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~ 225 (312)
T d2b69a1 146 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVAL 225 (312)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHH
Confidence 99999999999998888999999999999999754 46788999999999999999999999999999999999988
Q ss_pred HHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (586)
++ ...++.||+++++++++.|+++.+++.+|.+.+....|... ..+
T Consensus 226 ~~-------~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------~~~------- 271 (312)
T d2b69a1 226 MN-------SNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ--------------------DDP------- 271 (312)
T ss_dssp HT-------SSCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT--------------------TCC-------
T ss_pred Hh-------hccCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCCC--------------------CCC-------
Confidence 76 23456899999999999999999999999876544332110 001
Q ss_pred HHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.....|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 272 ----~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 272 ----QKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp ----CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ----CeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 23566999999999999999999999999999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.8e-43 Score=367.63 Aligned_cols=302 Identities=19% Similarity=0.164 Sum_probs=246.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.++|||||||||||||++|+++|+++|| +|+++|+.... ... . .....++..+|++|.+.+.++++++
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~---~~~------~--~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNE---HMT------E--DMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCS---SSC------G--GGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCcc---chh------h--hcccCcEEEeechhHHHHHHHhhcC
Confidence 3578999999999999999999999995 99997764321 000 0 1235688999999999999999999
Q ss_pred CEEEEcccCCCC----CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCC-----cccCCCC
Q 007866 86 STVFYVDATDLN----TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET-----LTCCWKF 156 (586)
Q Consensus 86 D~Vih~aa~~~~----~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~-----~p~~~~p 156 (586)
|+|||+|+.... ..++......|+.++.+++++|++++++||||+||..+|+..... +.+|. ...+..|
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~--~~~~~~~~~~e~~~~~p 158 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQL--ETTNVSLKESDAWPAEP 158 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSS--SSSSCEECGGGGSSBCC
T ss_pred CeEeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccc--cccccccccccCCcCCC
Confidence 999999988733 677889999999999999999999999999999999999754432 22221 1125688
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-------cHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 157 QDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 157 ~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-------~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
.++||.+|..+|++++.+.+++|++++++||+++||+++.. ...........+.....+++|.+.|+|+|++|
T Consensus 159 ~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 238 (363)
T d2c5aa1 159 QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE 238 (363)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhH
Confidence 99999999999999999988889999999999999997541 22334445556666789999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNH 309 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (586)
+++++..+++ ...++.||+++++++++.|+++.+.+.+|.+.+...+|.
T Consensus 239 ~~~~~~~~~~-------~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~------------------------ 287 (363)
T d2c5aa1 239 CVEGVLRLTK-------SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG------------------------ 287 (363)
T ss_dssp HHHHHHHHHH-------SSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC------------------------
T ss_pred HHHHHHHHHh-------CCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC------------------------
Confidence 9999998887 235679999999999999999999999998776554431
Q ss_pred CCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 310 SLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 310 ~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+.. ......|++|++++|||+|+++++|+|+++++||+++...
T Consensus 288 ~~~--------~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~~~ 330 (363)
T d2c5aa1 288 PEG--------VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEK 330 (363)
T ss_dssp CCC--------CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC--------ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 100 1245679999999999999999999999999999887553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-43 Score=365.34 Aligned_cols=310 Identities=18% Similarity=0.191 Sum_probs=243.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|||||||||||||++|++.|+++| ++|+++|+... .+.... .........+++++++|++|.+.+.++++ ++|
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 75 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCN---SKRSVL-PVIERLGGKHPTFVEGDIRNEALMTEILHDHAID 75 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSS---CCTTHH-HHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCC---cchhhH-HHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCC
Confidence 689999999999999999999999 59999876431 111000 00011234579999999999999999997 799
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+||... ...++..++++|+.||+|++++|++.+++++||+||.++|+.... .+..|..+ ...|.++|+.+
T Consensus 76 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~--~~~~e~~~-~~~p~~~Y~~s 152 (338)
T d1udca_ 76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPK--IPYVESFP-TGTPQSPYGKS 152 (338)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCS--SSBCTTSC-CCCCSSHHHHH
T ss_pred EEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccc--cccccccc-cCCCcchHHHH
Confidence 9999999763 245788999999999999999999999999999999999965443 23334333 46889999999
Q ss_pred HHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCC------------CcHHHHHHHhcC-CCceEEEcC------CCcccc
Q 007866 164 KAQAEALVLFANN-IDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAKP-GWTKFIIGS------GENMSD 223 (586)
Q Consensus 164 K~~~E~~l~~~~~-~~gl~~~ilRp~~v~G~~~~------------~~~~~l~~~~~~-g~~~~i~g~------g~~~~~ 223 (586)
|..+|.++.++.. ..+++++++||+++|||++. .+++.++..+.. +.++.+.|+ |++.+|
T Consensus 153 K~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd 232 (338)
T d1udca_ 153 KLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232 (338)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEEC
T ss_pred HhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceee
Confidence 9999999986543 45899999999999998643 245666665554 445666664 788899
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhc
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLG 303 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~ 303 (586)
|+|++|++.++..+.+.+. ....+++||+++++++|+.|+++.+.+.+|.+.+....|..
T Consensus 233 ~i~v~D~~~~~~~~~~~~~---~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~----------------- 292 (338)
T d1udca_ 233 YIHVMDLADGHVVAMEKLA---NKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR----------------- 292 (338)
T ss_dssp EEEHHHHHHHHHHHHHHHT---TCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCC-----------------
T ss_pred EEEEeehhhhccccccccc---cccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCC-----------------
Confidence 9999999999988777542 34556799999999999999999999999987665443311
Q ss_pred cccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 304 LRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+ .. .....+|++|++++|||+|+++++|+|+++++|++++++.
T Consensus 293 ------~----~~----~~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 293 ------E----GD----LPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp ------T----TC----CSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ------C----CC----CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 1 00 0234679999999999999999999999999999998654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.8e-44 Score=370.64 Aligned_cols=316 Identities=21% Similarity=0.219 Sum_probs=252.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++|+|||||||||||++|+++|+++|+ +|+++|+....+..+..............+++++.+|+.|...+.....+.+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 568999999999999999999999995 9999876431100000000000011122468999999999999999999999
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|+|+++... +..++...+++|+.|+.|++++|++++++++||+||+++||.. +..+.+|+.| ..|.+.|+.+
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~--~~~~~~E~~~--~~p~~~Y~~s 169 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDH--PGLPKVEDTI--GKPLSPYAVT 169 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTC--CCSSBCTTCC--CCCCSHHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCC--CCCCccCCCC--CCCCCcchHH
Confidence 9999998762 4667888999999999999999999999999999999999754 3446788884 5899999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCA 237 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~a 237 (586)
|..+|.+++.++++.+++++++||+++||++.. .+++.++..+.+|+++.++++|.+.++|+|++|+|+|+..+
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~ 249 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLA 249 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhh
Confidence 999999999998888999999999999999643 36778888889999999999999999999999999999988
Q ss_pred HHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHH
Q 007866 238 AEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIV 317 (586)
Q Consensus 238 le~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (586)
++. .....+++||+++++++|+.|+++.+.+.++.+......... .. ..+ +.
T Consensus 250 ~~~----~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~---------------~~----~~~---~~-- 301 (341)
T d1sb8a_ 250 ATA----GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV---------------YR----DFR---EG-- 301 (341)
T ss_dssp HTC----CGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE---------------EE----CCC---TT--
T ss_pred hhc----cccccceeeeecccccchHHHHHHHHHHHhcccccccccccc---------------cc----CCC---CC--
Confidence 863 234567899999999999999999999999765432211100 00 000 00
Q ss_pred HHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 318 QLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 318 ~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.......|++|++++|||+|++++++||+++++||++.
T Consensus 302 --~~~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 302 --DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 339 (341)
T ss_dssp --CCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred --CcCeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHh
Confidence 01234579999999999999999999999999999875
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=8.1e-43 Score=360.40 Aligned_cols=307 Identities=18% Similarity=0.196 Sum_probs=246.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
||+|||||||||||++|+++|+++|+. +|++.|.. .+...... ...+...+++++.+|++|.+.+.+++.++|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~-----~~~~~~~~-~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~ 75 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKL-----TYAGNKAN-LEAILGDRVELVVGDIADAELVDKLAAKAD 75 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC-----CTTCCGGG-TGGGCSSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCC-----CccccHHH-HHHhhcCCeEEEEccCCCHHHHHHHHhhhh
Confidence 799999999999999999999999952 45565542 22211111 122345689999999999999999999999
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC----------CCCCCCCCcccC
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH----------DIHNGDETLTCC 153 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~----------~~~~~~E~~p~~ 153 (586)
.|+|+|+... ...++..++++|+.|+.|++++|+..+. ++|++||.++||.... .....+|+. +
T Consensus 76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~--~ 152 (346)
T d1oc2a_ 76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET--N 152 (346)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS--C
T ss_pred hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCC--C
Confidence 9999999873 3467889999999999999999999985 8999999999974311 111233333 5
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCccccccchhHHH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (586)
..|.++||.+|..+|.+++.+++++|++++++||+++|||+.. ..+..++..+..|..+.++++|++.++|+|++|+|
T Consensus 153 ~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a 232 (346)
T d1oc2a_ 153 YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHS 232 (346)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHH
Confidence 6889999999999999999998888999999999999999753 56777777777888889999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSL 311 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (586)
++++.+++ ....++.||++++++.++.|+++.+.+.++.+...+... . ..+.
T Consensus 233 ~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------~----~~~~ 284 (346)
T d1oc2a_ 233 TGVWAILT------KGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHV------------------T----DRAG 284 (346)
T ss_dssp HHHHHHHH------HCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEE------------------C----CCTT
T ss_pred HHHHHHHh------hcccCccccccccccccchHHHHHHHHHhCCCCcceEEC------------------C----CCCC
Confidence 99998887 345677999999999999999999999998765433211 0 0010
Q ss_pred CcHHHHHHhccceeechhhHhhccCCCCCC-ChHHHHHHHHHHHHHhhh
Q 007866 312 SACYIVQLASRTRTFDCIAAQKHIGYSPVV-SLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 312 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~lee~i~~~i~~~~~~~~ 359 (586)
. ...+..|++|++++|||+|++ +++|||+++++||+++..
T Consensus 285 ~--------~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 285 H--------DLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp C--------CCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred C--------CceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0 013456999999999999997 599999999999998754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-43 Score=364.29 Aligned_cols=319 Identities=17% Similarity=0.149 Sum_probs=245.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH-HhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK-VLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~-~l~~~D~ 87 (586)
|||||||||||||++++++|+++||++|+++|+... ........++++++.+|+++.+.+.+ +++++|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~----------~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD----------AISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG----------GGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCc----------chhhhccCCCeEEEECccCChHHHHHHHHhCCCc
Confidence 689999999999999999999999889999776431 11122335689999999988766554 6778999
Q ss_pred EEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCc-----ccCCCCCCh
Q 007866 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETL-----TCCWKFQDL 159 (586)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~-----p~~~~p~~~ 159 (586)
|||+|+... ...++...+++|+.|+.|++++|.+.++ +++|+||+.+|+...... .+|.. .....|.+.
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~ 147 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKY--FDEDHSNLIVGPVNKPRWI 147 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSS--BCTTTCCCBCCCTTCGGGH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc-cccccccccccccccccc--cccccccccccccCCCcch
Confidence 999999863 3456778999999999999999999987 668999999997654322 22211 114567889
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC----------CcHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 160 MCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT----------QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 160 Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~----------~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
|+.||..+|++++.+++++|++++++||+.+||++.. ..++.++..+.+|+++.++++|++.++|+|++|
T Consensus 148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D 227 (342)
T d2blla1 148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred hhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccc
Confidence 9999999999999999888999999999999998643 146678888888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCC-CcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE-PIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYN 308 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~-~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~ 308 (586)
+|+++..+++.. .+...|++|||++++ ++|+.|+++.+.+.+|.......+|...... ...
T Consensus 228 ~~~a~~~~~~~~---~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~ 289 (342)
T d2blla1 228 GIEALYRIIENA---GNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR---------------VVE 289 (342)
T ss_dssp HHHHHHHHHHCG---GGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEE---------------EC-
T ss_pred ccceeeeehhhc---cccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccc---------------eec
Confidence 999999999832 234568999998765 4899999999999998876655544221000 000
Q ss_pred CCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhh
Q 007866 309 HSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLAR 359 (586)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~ 359 (586)
.......... .-..+..|++|++++|||+|+++++|+|+++++||+++..
T Consensus 290 ~~~~~~~~~~-~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 290 SSSYYGKGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp ------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred cccccccccc-cccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcC
Confidence 0000000000 0023456999999999999999999999999999988754
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-41 Score=347.61 Aligned_cols=313 Identities=17% Similarity=0.193 Sum_probs=238.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
|.|||||||||||++|+++|+++|+ +|+++|+.. +..... .........+++++.+|++|.+.+.+++. ++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 75 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLS-----NSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKI 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS-----SCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCC-----CcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCC
Confidence 5699999999999999999999995 999977532 211100 00011123578999999999999999886 79
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCC--CCCCCCCCcccCCCCCChH
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSH--DIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~--~~~~~~E~~p~~~~p~~~Y 160 (586)
|+|||+||... ...++..+.++|+.|+.+++++|++.+++|+||+||.+|||.... ...+.+|+. +..|.++|
T Consensus 76 d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~--~~~p~~~Y 153 (347)
T d1z45a2 76 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC--PLGPTNPY 153 (347)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS--CCCCCSHH
T ss_pred CEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCcccccc--CCCCCChh
Confidence 99999999862 355678899999999999999999999999999999999986543 234566666 45889999
Q ss_pred HHHHHHHHHHHHhhc--CCCCceEEEEeCCCcccCCCC------------CcHHHHHHHhc-CCCceEEEcCC------C
Q 007866 161 CDLKAQAEALVLFAN--NIDGLLTCALRPSNVFGPGDT------------QLVPLLVNLAK-PGWTKFIIGSG------E 219 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~--~~~gl~~~ilRp~~v~G~~~~------------~~~~~l~~~~~-~g~~~~i~g~g------~ 219 (586)
+.||..+|++++.+. ...+++++++||+++||+... .+++.+...+. .++++.++|++ .
T Consensus 154 ~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~ 233 (347)
T d1z45a2 154 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 233 (347)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCc
Confidence 999999999999875 346899999999999997532 24555555444 45555666654 4
Q ss_pred ccccccchhHHHHHHHHHHHHhhcc-cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSR-MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~-~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~ 298 (586)
+.+|++|+.|.+.+++.+++.+... .....+++||+++++++|+.|+++.+.+.+|.+.+....+...
T Consensus 234 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~----------- 302 (347)
T d1z45a2 234 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRA----------- 302 (347)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC------------------
T ss_pred eeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCC-----------
Confidence 5667888888889999888755433 2234568999999999999999999999999876543222100
Q ss_pred HHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+ +. .....|++|++++|||+|+++++|+|+++++|+++++..
T Consensus 303 ----~----~~------------~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~ 344 (347)
T d1z45a2 303 ----G----DV------------LNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 344 (347)
T ss_dssp ----------C------------CCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred ----C----CC------------CEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhc
Confidence 0 01 234679999999999999999999999999999998654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-40 Score=344.50 Aligned_cols=313 Identities=15% Similarity=0.183 Sum_probs=242.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC--C--CCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL--L--PDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~--~--~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+||||||||||||++|+++|+++| ++|+++|+... ..+...... . ...+...+++++.+|++|.+.+.+++.
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHN--AFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSS--SCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCc--cccccccchHHHHHHHHhcCCCcEEEEeecccccccccccc
Confidence 4799999999999999999999999 59999886432 112111000 0 011234678999999999999999886
Q ss_pred C--CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 84 G--ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 84 ~--~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+ +++|+|+||... ...+|...+++|+.|+.+++++|++.++++++|+||..+||....... .++.. ...|.+
T Consensus 79 ~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~-~~~~~--~~~~~~ 155 (346)
T d1ek6a_ 79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPL-DEAHP--TGGCTN 155 (346)
T ss_dssp HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSB-CTTSC--CCCCSS
T ss_pred ccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccc-ccccc--ccccCC
Confidence 5 568999999862 345688999999999999999999999999999999999986654322 12211 356788
Q ss_pred hHHHHHHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCC------------CcHHHHHH-HhcCCCceEEEc------CC
Q 007866 159 LMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDT------------QLVPLLVN-LAKPGWTKFIIG------SG 218 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~-~~gl~~~ilRp~~v~G~~~~------------~~~~~l~~-~~~~g~~~~i~g------~g 218 (586)
+|+.+|..+|+.+.++++ ..+++.+++||+++|||... .+++.+.. ...++.++.+.+ +|
T Consensus 156 ~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g 235 (346)
T d1ek6a_ 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG 235 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCC
Confidence 999999999999998765 35899999999999998542 23555444 334566666654 46
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHH
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWI 298 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~ 298 (586)
.+.|||+|++|+|.++..+++.. .....+++|||++++++++.|+++.+.+.+|.+.+....|..
T Consensus 236 ~~~Rdfi~v~D~a~~~~~~~~~~---~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~------------ 300 (346)
T d1ek6a_ 236 TGVRDYIHVVDLAKGHIAALRKL---KEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR------------ 300 (346)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHH---TTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC------------
T ss_pred CeeEeEEEEEeccchhhhhcccc---ccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCC------------
Confidence 77899999999999999887643 234567899999999999999999999999987765444311
Q ss_pred HHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 299 HEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
+.. ......|++|++++|||+|+++++|+|+++++|+++++..
T Consensus 301 -----------~~e--------~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~~ 343 (346)
T d1ek6a_ 301 -----------EGD--------VAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSG 343 (346)
T ss_dssp -----------TTC--------CSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred -----------CCC--------CCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHhh
Confidence 100 0234569999999999999999999999999999998765
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.9e-41 Score=345.99 Aligned_cols=305 Identities=16% Similarity=0.097 Sum_probs=237.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~D 86 (586)
|+|||||||||||++|+++|+++| ++|+++|+... .... ..+......++++++.+|++|.+.+.+.+.+ .+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~---~~~~--~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 74 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRS---SDTR--WRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 74 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCS---SCCC--HHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCC---cccH--HHHHHhcccCCcEEEEccccChHHhhhhhcccccc
Confidence 689999999999999999999999 59999766432 0000 0111122345789999999999999988864 78
Q ss_pred EEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
+++|+|+.. ....++..+++.|+.|+.|++++|++.+++ +++++||+.+||.. .....+|++ +..|.++|+.
T Consensus 75 ~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~--~~~~~~E~~--~~~p~~~Y~~ 150 (321)
T d1rpna_ 75 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLI--QAERQDENT--PFYPRSPYGV 150 (321)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSC--SSSSBCTTS--CCCCCSHHHH
T ss_pred ccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcc--cCCCCCCCC--CccccChhHH
Confidence 999998876 246678899999999999999999999854 78888888888543 334567877 4589999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC--C---cHHHHHHH-hcCCCceEEEcCCCccccccchhHHHHHHHH
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT--Q---LVPLLVNL-AKPGWTKFIIGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~--~---~~~~l~~~-~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
+|..+|.++..++.+++++.+++||+++|||... . .+..++.. ...+.+...+|+|++.++|+|++|+|+++..
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~ 230 (321)
T d1rpna_ 151 AKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 230 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHH
Confidence 9999999999998888999999999999999643 2 22233333 4444455678999999999999999999999
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCC-ccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF-IKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~-i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
+++ .+ .++.||++++++.++.++++.+.+..|.+.+. ..++... ..| .
T Consensus 231 ~~~-----~~--~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~rp----~ 279 (321)
T d1rpna_ 231 MLQ-----QD--KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAF--------------------FRP----A 279 (321)
T ss_dssp HHH-----SS--SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGG--------------------CCS----S
T ss_pred HHh-----cC--CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCC--------------------CCC----C
Confidence 998 22 35689999999999999999999999876432 2222110 001 0
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhh
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLA 358 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~ 358 (586)
....+..|++|++++|||+|+++++|+|+++++|+.++.
T Consensus 280 ----~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~~~ 318 (321)
T d1rpna_ 280 ----EVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRV 318 (321)
T ss_dssp ----CCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----ccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHh
Confidence 012346699999999999999999999999999988754
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-40 Score=343.96 Aligned_cols=326 Identities=16% Similarity=0.098 Sum_probs=238.0
Q ss_pred CeE-EEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 9 RTC-VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 9 ~~I-lVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~-~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
||| ||||||||||++|+++|+++| ++|+++|+..+. +..+-+............+++++.+|++|.+.+.+++. +
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 578 999999999999999999999 599998775421 01111110000111123478999999999999999986 5
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCC---CEEEEecCccccccCCCCCCCCCCCcccCCCCCC
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV---RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQD 158 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gv---kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~ 158 (586)
+++|+|+++... ...++..++++|+.||.|++++|+++++ ++|||+||++|||. +...+.+|++| ..|.+
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~--~~~~~~~E~~~--~~P~~ 155 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGK--VQEIPQKETTP--FYPRS 155 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCS--CSSSSBCTTSC--CCCCS
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecC--CCCCCCCCCCC--CCCCC
Confidence 789999998762 3556788899999999999999999875 48999999999974 34457889884 58999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cHHHHHHHhcCCCceEEEcCCCccccccchhHHHH
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAH 232 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ 232 (586)
+||.||..+|++++.++++++++++++||+++|||+... ....+......+.+...+|+|++.++|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 999999999999999988889999999999999996542 22334555556777788999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 007866 233 AHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLS 312 (586)
Q Consensus 233 ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
++..+++. . ..+.|+++.+...++.+..+.+...++........+...+ ......+......
T Consensus 236 a~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 297 (347)
T d1t2aa_ 236 AMWLMLQN-----D--EPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEV-----------GRCKETGKVHVTV 297 (347)
T ss_dssp HHHHHHHS-----S--SCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCE-----------EEETTTCCEEEEE
T ss_pred HHHHHhhc-----C--CCccceeccccccccchhhhhhhhhhcceeeecccchhhh-----------hhhhhcCCceeee
Confidence 99999982 2 2357899999999999999999999987543221111000 0000000000000
Q ss_pred cHHHHH-HhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 313 ACYIVQ-LASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 313 ~~~~~~-~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
+....+ .....+.+|++|++++|||+|+++++|+|++++++..+.
T Consensus 298 ~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~ 343 (347)
T d1t2aa_ 298 DLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVEL 343 (347)
T ss_dssp CGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 000000 001234569999999999999999999999999876553
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=6.6e-40 Score=343.22 Aligned_cols=318 Identities=17% Similarity=0.144 Sum_probs=240.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHh-cCCcEEEEecCCcccccCCCCC------------CCCCCCCCCCCCeEEEEccCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSES------------NSLLPDSLSSGRAEYHQVDVRD 74 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~-~g~~~V~~~d~~~~~~l~r~~~------------~~~~~~~l~~~~~~~~~~Dl~d 74 (586)
.|||||||||||||++|+++|++ .| ++|+++|............ ...........+..++.+|++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 47999999999999999999997 46 6999998632110000000 0000111223468899999999
Q ss_pred HHHHHHHhc---CCCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCC-----
Q 007866 75 ISQIKKVLE---GASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDI----- 143 (586)
Q Consensus 75 ~~~l~~~l~---~~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~----- 143 (586)
.+.+.++++ ++|+|||+|+... ...++...+++|+.++.++++++++.++++++++||.++|+......
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 999999885 5799999999862 34567788999999999999999999999999999999997654322
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-----------cHHHHHHH-------
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-----------LVPLLVNL------- 205 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-----------~~~~l~~~------- 205 (586)
.+..|+. +..|.++|+.+|..+|++++.+.+.+|++++++||+++|||++.. +++.++..
T Consensus 161 ~~~~e~~--~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 161 EPIDINA--KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (383)
T ss_dssp CCBCTTS--CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred ccccccc--CCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccc
Confidence 2334444 568899999999999999999988889999999999999997642 23333222
Q ss_pred ---------hcCCCceEEEc------CCCccccccchhHHHHHHHHHHHHhhccc---ccCCCcEEEEeCCCCcCHHHHH
Q 007866 206 ---------AKPGWTKFIIG------SGENMSDFTYVENVAHAHVCAAEALDSRM---VSVAGMAFFITNLEPIKFWDFL 267 (586)
Q Consensus 206 ---------~~~g~~~~i~g------~g~~~~~~i~v~Dva~ai~~ale~~~~~~---~~~~g~~~ni~~~~~~t~~ei~ 267 (586)
...++++.++| ||.+.|||+|++|+|++++.+++.+.... ....+++|||++++++++.|++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~ 318 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVI 318 (383)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHH
T ss_pred cccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHH
Confidence 22345555655 57889999999999999999998654322 2345679999999999999999
Q ss_pred HHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHH
Q 007866 268 SIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGV 347 (586)
Q Consensus 268 ~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i 347 (586)
+.+.+..|.+.+....+. .+.. ...+..|++|++++|||+|+++++|+|
T Consensus 319 ~~i~~~~~~~~~~~~~~~-----------------------~~~d--------~~~~~~d~~k~~k~LGw~P~~~l~e~i 367 (383)
T d1gy8a_ 319 EVARKTTGHPIPVRECGR-----------------------REGD--------PAYLVAASDKAREVLGWKPKYDTLEAI 367 (383)
T ss_dssp HHHHHHHCCCCCEEEECC-----------------------CTTC--------CSEECBCCHHHHHHTCCCCSCCSHHHH
T ss_pred HHHHHHhCCCCceEECCC-----------------------CCCC--------cCEeeeCHHHHHHHHCCccCCCHHHHH
Confidence 999999998766544321 1100 023456999999999999999999999
Q ss_pred HHH-HHHHHHhhh
Q 007866 348 SST-IQSFSHLAR 359 (586)
Q Consensus 348 ~~~-i~~~~~~~~ 359 (586)
+++ +.|++.++.
T Consensus 368 ~~t~~~w~~~~~~ 380 (383)
T d1gy8a_ 368 METSWKFQRTHPN 380 (383)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCcc
Confidence 987 588887654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-39 Score=342.28 Aligned_cols=319 Identities=15% Similarity=0.124 Sum_probs=234.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc---------ccCCCCCCC-CC--CCCCCCCCeEEEEccCCCH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL---------QLDPSESNS-LL--PDSLSSGRAEYHQVDVRDI 75 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~---------~l~r~~~~~-~~--~~~l~~~~~~~~~~Dl~d~ 75 (586)
+|||||||||||||++|+++|+++| ++|+++|..... .+....... .+ .......+++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 5899999999999999999999999 599998853110 000000000 00 0001235789999999999
Q ss_pred HHHHHHhcC--CCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCccccccCCCCCC--
Q 007866 76 SQIKKVLEG--ASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTADVVFDGSHDIH-- 144 (586)
Q Consensus 76 ~~l~~~l~~--~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~vyg~~~~~~~-- 144 (586)
+.+.+++++ +|+|||+||... ...++..++++|+.||.|++++|++.+++ +++++||+.+|+.......
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~ 159 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEG 159 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccccc
Confidence 999999974 699999999762 22335678999999999999999998765 6788888888764322110
Q ss_pred -------CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-------------------Cc
Q 007866 145 -------NGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-------------------QL 198 (586)
Q Consensus 145 -------~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-------------------~~ 198 (586)
..+++.+.+..|.++|+.||..+|.+++.++++++++++++||+++|||+.. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 1112234467888999999999999999998888999999999999999743 24
Q ss_pred HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE-eCCCCcCHHHHHHHHHHHcCC-
Q 007866 199 VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI-TNLEPIKFWDFLSIILEGLGY- 276 (586)
Q Consensus 199 ~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni-~~~~~~t~~ei~~~i~~~~g~- 276 (586)
++.++.....|+++.++|+|.+.|||+|++|+++++..+++ ++...|+.+.+ ++++++|+.|+++.+.+..+.
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~-----~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~ 314 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA-----NPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKL 314 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH-----SCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTT
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHH-----hhcccceeeeecCCCCeeEHHHHHHHHHHHHHhh
Confidence 67788888889999999999999999999999999999998 34555543333 445789999999999887643
Q ss_pred --CCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHH
Q 007866 277 --QRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (586)
Q Consensus 277 --~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~ 354 (586)
+......+ .+.... ....+..|++|+++ |||+|+++++++++++++|+
T Consensus 315 ~~~~~~~~~~------------------------~~~~~~-----~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~ 364 (393)
T d1i24a_ 315 GLDVKKMTVP------------------------NPRVEA-----EEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFA 364 (393)
T ss_dssp TCCCCEEEEC------------------------CSSCSC-----SSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHH
T ss_pred CCCcceeecc------------------------CCCCCC-----CccEecCCHHHHHH-cCCccccCHHHHHHHHHHHH
Confidence 22222111 000000 01234568899975 99999999999999999999
Q ss_pred HHhhhccc
Q 007866 355 SHLARDSS 362 (586)
Q Consensus 355 ~~~~~~~~ 362 (586)
+++.....
T Consensus 365 ~~~k~~~~ 372 (393)
T d1i24a_ 365 VQFKDRVD 372 (393)
T ss_dssp HHTGGGCC
T ss_pred HHHHHhhh
Confidence 88766533
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.4e-40 Score=333.75 Aligned_cols=290 Identities=17% Similarity=0.179 Sum_probs=230.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
.|||||||||||||++|+++|+++|+ .|+++|. .. .+|+.|.+.+.++++ ++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~--------~~-----------------~~~~~~~~~~~~~~~~~~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT--------RD-----------------ELNLLDSRAVHDFFASERI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC--------TT-----------------TCCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC--------ch-----------------hccccCHHHHHHHHhhcCC
Confidence 47999999999999999999999995 7777322 11 148899999988885 48
Q ss_pred CEEEEcccCCC----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCccc---CCCCCC
Q 007866 86 STVFYVDATDL----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTC---CWKFQD 158 (586)
Q Consensus 86 D~Vih~aa~~~----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~---~~~p~~ 158 (586)
|.|+|+|+... ...++..++++|+.||.|++++|++++++||||+||.+|||... ..+.+|+.+. +..|.+
T Consensus 56 d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~--~~~~~E~~~~~~~~~~~~~ 133 (315)
T d1e6ua_ 56 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA--KQPMAESELLQGTLEPTNE 133 (315)
T ss_dssp SEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC--CSSBCGGGTTSSCCCGGGH
T ss_pred CEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCC--CCCccCCccccCCCCCCCC
Confidence 99999998762 24467788999999999999999999999999999999997533 3456776543 233456
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC------cH-----HHHHHHhcCCCceEEEcCCCccccccch
Q 007866 159 LMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ------LV-----PLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 159 ~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~------~~-----~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+|+.||..+|++++.+++++|++++++||+++|||++.. .. .........+..+.+.++|.+.++|+|+
T Consensus 134 ~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v 213 (315)
T d1e6ua_ 134 PYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHV 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEe
Confidence 899999999999999998889999999999999997642 11 2234455678888999999999999999
Q ss_pred hHHHHHHHHHHHHhhcc---cccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhcc
Q 007866 228 ENVAHAHVCAAEALDSR---MVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGL 304 (586)
Q Consensus 228 ~Dva~ai~~ale~~~~~---~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~ 304 (586)
+|+++++..+++..... ........++++.+.+.+..++++.+.+.+|.+......|.
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~------------------- 274 (315)
T d1e6ua_ 214 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------------------- 274 (315)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-------------------
T ss_pred ehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-------------------
Confidence 99999999988643221 12344568999999999999999999999998764432221
Q ss_pred ccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHh
Q 007866 305 RTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHL 357 (586)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~ 357 (586)
.|.. ...+..|++|++ +|||+|+++++|+|+++++||+++
T Consensus 275 ----~~~~--------~~~~~~d~sk~k-~Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 275 ----KPDG--------TPRKLLDVTRLH-QLGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp ----SCCC--------CSBCCBCCHHHH-HTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred ----CCCC--------CceeccCHHHHH-HcCCCCCCCHHHHHHHHHHHHHHc
Confidence 1100 113457999997 599999999999999999999976
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.1e-39 Score=331.81 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=234.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc-ccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL-QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~-~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~ 85 (586)
|++||||||||||+||+++|+++| ++|+++|+.... +..+...-...........++++.+|+++.+.+.+.++ ++
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 789999999999999999999999 599998875320 01111110001112234568899999999999999885 68
Q ss_pred CEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhC-----CCCEEEEecCccccccCCCCCCCCCCCcccCCCCC
Q 007866 86 STVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACREC-----KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQ 157 (586)
Q Consensus 86 D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~-----gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~ 157 (586)
|+|||+|+... ...+|...++.|+.++.++++++++. ...+++++||+.+|+... .+.+|+. +..|.
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---~~~~E~~--~~~p~ 155 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---PPQSETT--PFHPR 155 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC---SSBCTTS--CCCCC
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC---CCCCCCC--CCCCc
Confidence 99999999863 24578899999999999999999864 344788888888875433 3578887 45899
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCC-c----H-HHHHHHhcCCCceEEEcCCCccccccchhHHH
Q 007866 158 DLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQ-L----V-PLLVNLAKPGWTKFIIGSGENMSDFTYVENVA 231 (586)
Q Consensus 158 ~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~-~----~-~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva 231 (586)
+.|+.+|..+|.++..++++++++++++||+++|||+... . + ..+......+....+.|++.+.+||+|++|+|
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHH
Confidence 9999999999999999998889999999999999997542 2 2 22223344555567889999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCc-cCCHHHHHHHHHHHHHHHHHhccccCCCC
Q 007866 232 HAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFI-KLPTGVVWYIILLVKWIHEKLGLRTYNHS 310 (586)
Q Consensus 232 ~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i-~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
+++..+++ .+ .+..++++.+.+.+..++++.+.+.+|...... .+... . ..|
T Consensus 236 ~~~~~~~~-----~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-----~r~ 288 (339)
T d1n7ha_ 236 EAMWLMLQ-----QE--KPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR---------------Y-----FRP 288 (339)
T ss_dssp HHHHHHHT-----SS--SCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG---------------G-----SCS
T ss_pred HHHHHHHh-----cC--CCCccccccccccccchhhhhhhhhhhcccCceeeeccC---------------C-----CCC
Confidence 99999988 22 345678888899999999999999998764321 11100 0 011
Q ss_pred CCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 311 LSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 311 ~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
. . ...+..|++|++++|||+|+++++|+|+++++|+.+....
T Consensus 289 ~-~-------~~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 289 A-E-------VDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp S-C-------CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred C-C-------CCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 0 0 0134559999999999999999999999999999887554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.4e-39 Score=333.54 Aligned_cols=306 Identities=20% Similarity=0.236 Sum_probs=236.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC--CCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG--AST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~--~D~ 87 (586)
||||||||||||++|+++|+++| ++|+++|.. .+......+.......+++++.+|++|.+.+.+++++ +|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~-----~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNL-----SRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC-----CSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECC-----CcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 79999999999999999999999 499998753 2221111111111245789999999999999999976 699
Q ss_pred EEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCC-------------CCCCcc
Q 007866 88 VFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHN-------------GDETLT 151 (586)
Q Consensus 88 Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~-------------~~E~~p 151 (586)
|||+|+... ...++....++|+.||.||+++|.+.+++++|+.||+++++........ ......
T Consensus 76 Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T d1orra_ 76 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 155 (338)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccC
Confidence 999999873 3447889999999999999999999999887777777776543321110 001111
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC-----CcHHHHHHHhc-----CCCceEEEcCCCcc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAK-----PGWTKFIIGSGENM 221 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~-----~~~~~l~~~~~-----~g~~~~i~g~g~~~ 221 (586)
.+..|.+.|+.+|...|.+...+.+.++...+.+|++++||+... ..++.++..+. .++++.++|+|.+.
T Consensus 156 ~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 235 (338)
T d1orra_ 156 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV 235 (338)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred CccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCcee
Confidence 245788999999999999999988888999999999999987542 34455554432 47788999999999
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC--CCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN--LEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIH 299 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~--~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~ 299 (586)
++|+|++|++++++.+++.. ....|++|++.. ++++++.|+++.+.+..|.+.+...+|..
T Consensus 236 r~~~~v~D~~~~~~~~l~~~----~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~------------- 298 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANV----SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR------------- 298 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTH----HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC-------------
T ss_pred EeeecccchhhHHHHHHhcc----ccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCC-------------
Confidence 99999999999999998732 346678999955 45799999999999999987665544311
Q ss_pred HHhccccCCCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 300 EKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
+. . ...+..|++|++++|||+|+++++|+|+++++|++.
T Consensus 299 ----------~~-~-------~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 299 ----------ES-D-------QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp ----------SS-C-------CSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ----------CC-C-------cCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 10 0 023456999999999999999999999999999985
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=4.6e-36 Score=310.13 Aligned_cols=313 Identities=19% Similarity=0.196 Sum_probs=235.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
.+|||||||||||||+++++.|+++|+ +|+++|+.... .+. .+......++++++.+|++|++.+.++++ .
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~----~~~--~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~ 79 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPT----VPS--LFETARVADGMQSEIGDIRDQNKLLESIREFQ 79 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSS----SSC--HHHHTTTTTTSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCc----cHH--HHhhhhcccCCeEEEeeccChHhhhhhhhhch
Confidence 369999999999999999999999994 99996654321 000 00011123579999999999999999886 4
Q ss_pred CCEEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHH
Q 007866 85 ASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC 161 (586)
Q Consensus 85 ~D~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~ 161 (586)
+|+|+|+|+... ...++...+++|+.|+.|+++++++.+.+++++.||.++++.+.....+.+|+. +..|.++|+
T Consensus 80 ~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~~~y~ 157 (356)
T d1rkxa_ 80 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE--AMGGYDPYS 157 (356)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS--CBCCSSHHH
T ss_pred hhhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccccccccccc--ccCCCCccc
Confidence 799999999872 346788999999999999999999987555555555555555555555666666 458899999
Q ss_pred HHHHHHHHHHHhhcC---------CCCceEEEEeCCCcccCCCC---CcHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 162 DLKAQAEALVLFANN---------IDGLLTCALRPSNVFGPGDT---QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 162 ~sK~~~E~~l~~~~~---------~~gl~~~ilRp~~v~G~~~~---~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
.+|..+|..+..+.. ++++.++++||+++|||++. .+++.+++.+..+.+ .+++++.+.++++|++|
T Consensus 158 ~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~D 236 (356)
T d1rkxa_ 158 NSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQP-VIIRNPHAIRPWQHVLE 236 (356)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCC-EECSCTTCEECCEETHH
T ss_pred cccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCc-eEEeecccccccccccc
Confidence 999999998876543 35788999999999999864 456777777776665 57899999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEe--CCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFIT--NLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTY 307 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~--~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~ 307 (586)
+++|+..+++..... ....+...+.. .++.+++.++++.+.+..|........+..
T Consensus 237 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------------- 294 (356)
T d1rkxa_ 237 PLSGYLLLAQKLYTD-GAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNA--------------------- 294 (356)
T ss_dssp HHHHHHHHHHHHHHT-CGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------------------------
T ss_pred ccchhhhhhhhhccc-ccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCC---------------------
Confidence 999999888743221 12223333433 456799999999999999876543221100
Q ss_pred CCCCCcHHHHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHHHHhhhc
Q 007866 308 NHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSHLARD 360 (586)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~~~~~ 360 (586)
.| . -...+..|++|++++|||+|+++++++|+++++||++....
T Consensus 295 -~~----~----~~~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 295 -HP----H----EAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp ------------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred -CC----C----CcCeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 00 0 01234679999999999999999999999999999986544
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=2.6e-35 Score=303.28 Aligned_cols=299 Identities=15% Similarity=0.070 Sum_probs=220.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-C----CCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-L----PDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~----~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+++|||||||||||++++++|+++| ++|++ +.|+.++.. + ...........+.+|+.|.+.+.++
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~--------~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 80 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRG--------TARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEV 80 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEE--------EESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc-CEEEE--------EeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhh
Confidence 46899999999999999999999999 59998 444322100 0 0001122345677999999999999
Q ss_pred hcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCccccccCCCCC--CCCCCCcc-------
Q 007866 82 LEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-KVRRLVYNSTADVVFDGSHDI--HNGDETLT------- 151 (586)
Q Consensus 82 l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvkr~I~~SS~~vyg~~~~~~--~~~~E~~p------- 151 (586)
+.++|+|+|+|+......++...++.|+.||.|++++|.+. +++++||+||+.+++.+.+.. ...+|+.+
T Consensus 81 ~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (342)
T d1y1pa1 81 IKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp TTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred cccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccc
Confidence 99999999999998777788899999999999999999987 699999999987765433222 12233221
Q ss_pred -------cCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCC-----CCcHHHHHHHhcCCCceEEEcC
Q 007866 152 -------CCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGD-----TQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 152 -------~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~-----~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
.+..|.++|+.+|..+|++++.+.++ .+++++++||+++|||.. ...+..++..+.+|+.... ..
T Consensus 161 ~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~-~~ 239 (342)
T d1y1pa1 161 AKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPA-LA 239 (342)
T ss_dssp HHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHH-HH
T ss_pred cccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcc-cC
Confidence 14466778999999999999888654 357889999999999853 2456677777777775433 34
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHH
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKW 297 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~ 297 (586)
+.+.++|+|++|+|++++.+++ .+...| .||+++++++|+.|+++++.+.++.......+|.
T Consensus 240 ~~~~~~~v~v~Dva~~~i~~l~-----~~~~~g-~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~------------ 301 (342)
T d1y1pa1 240 LMPPQYYVSAVDIGLLHLGCLV-----LPQIER-RRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD------------ 301 (342)
T ss_dssp TCCSEEEEEHHHHHHHHHHHHH-----CTTCCS-CEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC------------
T ss_pred CccceeeeeHHHHHHHHHHhhc-----Cccccc-eEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc------------
Confidence 5677899999999999999998 455555 5678888999999999999998854332222221
Q ss_pred HHHHhccccCCCCCCcHHHHHHhccceee---chhhHhhccCCCCCCChHHHHHHHHHHH
Q 007866 298 IHEKLGLRTYNHSLSACYIVQLASRTRTF---DCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (586)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~ka~~~LG~~p~~~lee~i~~~i~~~ 354 (586)
..+ ....+ ...+..+.|||.|.+++||+|++++++.
T Consensus 302 ----------~~~-----------~~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 302 ----------QGQ-----------DLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp ----------CCC-----------CCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred ----------cCc-----------ccccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 000 01111 2334445699999889999999998754
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-34 Score=287.05 Aligned_cols=290 Identities=18% Similarity=0.145 Sum_probs=198.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHH-HHHH-----hcC
Q 007866 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ-IKKV-----LEG 84 (586)
Q Consensus 11 IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~-l~~~-----l~~ 84 (586)
|||||||||||++|+++|+++|+++|+++|... +... .... .+...+|..+.+. .... +..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~-----~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK-----DGTK---FVNL-----VDLNIADYMDKEDFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCS-----SGGG---GHHH-----HTSCCSEEEEHHHHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCC-----Ccch---hhcc-----cccchhhhccchHHHHHHhhhhcccc
Confidence 899999999999999999999965899977432 1110 0000 0111122222222 2222 245
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+++|+|+|+.. ....+.....+.|+.++.+++++++..+++ +++.||..+|+.... ...+|+. +..|.+.|+.+
T Consensus 69 ~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~v~~ss~~~~~~~~~--~~~~~~~--~~~~~~~Y~~~ 143 (307)
T d1eq2a_ 69 VEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSAATYGGRTS--DFIESRE--YEKPLNVYGYS 143 (307)
T ss_dssp CCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC-EEEEEEGGGGTTCCS--CBCSSGG--GCCCSSHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccc-ccccccccccccccc--ccccccc--ccccccccccc
Confidence 89999999976 356677888899999999999999999985 666777777643322 2344444 45788999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEE-EcCCCccccccchhHHHHHHHH
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFI-IGSGENMSDFTYVENVAHAHVC 236 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i-~g~g~~~~~~i~v~Dva~ai~~ 236 (586)
|..+|.+++.++.+++++++++||+++|||+.. ..+..+.+.+..|+...+ .|++...++|+|++|++.++..
T Consensus 144 K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 144 KFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHH
T ss_pred cchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999999753 345667777777765443 5788889999999999999998
Q ss_pred HHHHhhcccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCC-CCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHH
Q 007866 237 AAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQR-PFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACY 315 (586)
Q Consensus 237 ale~~~~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~-~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (586)
+++. ...+.||++++++.|++|+++++.+..+... ..++.|..
T Consensus 224 ~~~~-------~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~----------------------------- 267 (307)
T d1eq2a_ 224 FLEN-------GVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDK----------------------------- 267 (307)
T ss_dssp HHHH-------CCCEEEEESCSCCBCHHHHHHHC----------------------------------------------
T ss_pred Hhhh-------ccccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCcc-----------------------------
Confidence 8872 3456999999999999999999987665321 11111100
Q ss_pred HHHHhccceeechhhHhhccCCCCCCChHHHHHHHHHHH
Q 007866 316 IVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354 (586)
Q Consensus 316 ~~~~~~~~~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~ 354 (586)
...........|++|+++.+||+|+++++|||+++++|+
T Consensus 268 ~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 268 LKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp ----CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred CCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 000001123458999999999999999999999999996
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=3.6e-33 Score=278.26 Aligned_cols=274 Identities=16% Similarity=0.144 Sum_probs=220.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|||||||||||||++|+++|.++| ++|+++ +|.. +|+.|.+++.++++ ++|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~--------~r~~------------------~D~~d~~~~~~~l~~~~~d 54 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-VEVIPT--------DVQD------------------LDITNVLAVNKFFNEKKPN 54 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEE--------CTTT------------------CCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEe--------echh------------------ccCCCHHHHHHHHHHcCCC
Confidence 789999999999999999999999 499994 4421 38999999999997 579
Q ss_pred EEEEcccCCC---CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~~---~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+|||+|+... ....+......|+..+.++.+.+...+. +++++||..+|+.. ...+.+|++ +..|.+.|+.+
T Consensus 55 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~--~~~~~~e~~--~~~~~~~~~~~ 129 (281)
T d1vl0a_ 55 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGE--AKEPITEFD--EVNPQSAYGKT 129 (281)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSC--CSSCBCTTS--CCCCCSHHHHH
T ss_pred EEEeeccccccccccccchhhcccccccccccccccccccc-cccccccceeeecc--ccccccccc--cccchhhhhhh
Confidence 9999999872 3456788889999999999999888765 78889999998543 334567766 45889999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|.+++++ +.+.+++||+++||++.+ ....++..+..+..+.+.+ ++.++++|++|+++++..+++.
T Consensus 130 k~~~e~~~~~~----~~~~~i~R~~~vyG~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~--- 199 (281)
T d1vl0a_ 130 KLEGENFVKAL----NPKYYIVRTAWLYGDGNN-FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDE--- 199 (281)
T ss_dssp HHHHHHHHHHH----CSSEEEEEECSEESSSSC-HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHh----CCCccccceeEEeCCCcc-cccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhh---
Confidence 99999999885 678999999999999864 5666777777777766665 5889999999999999999983
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
. ..+.||+++++++|+.|+++.+++.+|.+....++|..- .+.. ...| ..
T Consensus 200 ---~-~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~--------------~~~~-a~rp-----------~~ 249 (281)
T d1vl0a_ 200 ---K-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEE--------------FPRP-AKRP-----------KY 249 (281)
T ss_dssp ---T-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTT--------------SCCS-SCCC-----------SB
T ss_pred ---c-ccCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHH--------------cCCc-CCCc-----------cc
Confidence 2 235999999999999999999999999887655554210 0000 0001 12
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFS 355 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~ 355 (586)
..+|++|+++.+||+|+ +++|++++++++++
T Consensus 250 ~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 250 SVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp CCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 34699999999999998 99999999999985
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.6e-31 Score=267.95 Aligned_cols=290 Identities=13% Similarity=0.081 Sum_probs=213.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~~D 86 (586)
|||||||||||||++|++.|.++|+ .|.+ + .+... +.+|++|.+.+.++++ ++|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~-~-------~~~~~---------------~~~Dl~~~~~~~~~i~~~~~D 56 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIAL-D-------VHSKE---------------FCGDFSNPKGVAETVRKLRPD 56 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEE-C-------TTCSS---------------SCCCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEE-E-------CCCcc---------------ccCcCCCHHHHHHHHHHcCCC
Confidence 7899999999999999999999994 5544 2 22211 2479999999999997 479
Q ss_pred EEEEcccCC---CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHH
Q 007866 87 TVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL 163 (586)
Q Consensus 87 ~Vih~aa~~---~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~s 163 (586)
+||||||.. ....++...++.|+.++.+++++|++.++ +++++||..+|+.. ...+.+|+. +..|.+.|+.+
T Consensus 57 ~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~--~~~~~~E~~--~~~p~~~y~~~ 131 (298)
T d1n2sa_ 57 VIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGT--GDIPWQETD--ATSPLNVYGKT 131 (298)
T ss_dssp EEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCC--TTCCBCTTS--CCCCSSHHHHH
T ss_pred EEEEecccccccccccCccccccccccccccchhhhhcccc-ccccccccccccCC--CCCCCcccc--ccCCCchHhhh
Confidence 999999976 24778899999999999999999999886 78999999988543 334677877 45799999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhc
Q 007866 164 KAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDS 243 (586)
Q Consensus 164 K~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~ 243 (586)
|..+|..+..+.. ...++|++..|+.........+...+..+..+... +...++++|++|+++++..+++....
T Consensus 132 k~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 132 KLAGEKALQDNCP----KHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVI--NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHHHHHHHCS----SEEEEEECSEECSSSCCHHHHHHHHHHHCSEEEEE--CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHhhhc----ccccccccceeeccCCccchhhhhhhcccceeecc--cceeecccccchHHHHHHHHHhhhhc
Confidence 9999999988654 34566777766554445555566666666655444 45788999999999999988874432
Q ss_pred ccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHhccc
Q 007866 244 RMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRTYNHSLSACYIVQLASRT 323 (586)
Q Consensus 244 ~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (586)
....+++||+++++.++..|+++.+.+..+.......++.. .+......+ ..+.+ -..
T Consensus 206 --~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~i~~~~~~-~~a~R----P~~ 263 (298)
T d1n2sa_ 206 --KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTEL---------------NAVPTSAYP-TPASR----PGN 263 (298)
T ss_dssp --CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEE---------------EEECSTTSC-CSSCC----CSB
T ss_pred --cccccccccccCCCceecHHHHHHHHhhhhccCccccccce---------------eeeehhhcC-ccCCC----ccc
Confidence 23456799999999999999999988766432222111100 000000000 00000 012
Q ss_pred eeechhhHhhccCCCCCCChHHHHHHHHHHHHH
Q 007866 324 RTFDCIAAQKHIGYSPVVSLEEGVSSTIQSFSH 356 (586)
Q Consensus 324 ~~~d~~ka~~~LG~~p~~~lee~i~~~i~~~~~ 356 (586)
..+|++|+++.+||+|+ +++++|+++++++..
T Consensus 264 ~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 264 SRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHCCCCC-cHHHHHHHHHHHHHh
Confidence 35799999999999998 999999999998865
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.5e-27 Score=222.72 Aligned_cols=203 Identities=17% Similarity=0.174 Sum_probs=162.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|.|+||+||||||+||++++++|+++| ++|++ +.|++++. ......+++++.+|+.|.+++.++++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~--------~~R~~~~~---~~~~~~~~~~~~gD~~d~~~l~~al~~~ 68 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTV--------LVRDSSRL---PSEGPRPAHVVVGDVLQAADVDKTVAGQ 68 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEE--------EESCGGGS---CSSSCCCSEEEESCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEE--------EEcChhhc---ccccccccccccccccchhhHHHHhcCC
Confidence 457999999999999999999999999 59999 45544421 1123467899999999999999999999
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
|+|||++|....... .+.+..+++|++++++++|++|||++||..+|++.. . .......|...|.
T Consensus 69 d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~--------~---~~~~~~~~~~~~~ 133 (205)
T d1hdoa_ 69 DAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT--------K---VPPRLQAVTDDHI 133 (205)
T ss_dssp SEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTT--------C---SCGGGHHHHHHHH
T ss_pred CEEEEEeccCCchhh----hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCc--------c---ccccccccchHHH
Confidence 999999987633222 246778999999999999999999999999874321 1 1133457899999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhccc
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRM 245 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~ 245 (586)
.+|+++++ .|+++|++||+.+++... .+. ..+..++.....+|+.+|+|++++.+++ +
T Consensus 134 ~~e~~l~~----~~~~~tiirp~~~~~~~~------------~~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~-----~ 191 (205)
T d1hdoa_ 134 RMHKVLRE----SGLKYVAVMPPHIGDQPL------------TGA-YTVTLDGRGPSRVISKHDLGHFMLRCLT-----T 191 (205)
T ss_dssp HHHHHHHH----TCSEEEEECCSEEECCCC------------CSC-CEEESSSCSSCSEEEHHHHHHHHHHTTS-----C
T ss_pred HHHHHHHh----cCCceEEEecceecCCCC------------ccc-EEEeeCCCCCCCcCCHHHHHHHHHHHhC-----C
Confidence 99999887 689999999999986432 222 2566677788899999999999999887 5
Q ss_pred ccCCCcEEEEeC
Q 007866 246 VSVAGMAFFITN 257 (586)
Q Consensus 246 ~~~~g~~~ni~~ 257 (586)
+...|+.+.++.
T Consensus 192 ~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 192 DEYDGHSTYPSH 203 (205)
T ss_dssp STTTTCEEEEEC
T ss_pred CCCCCEEEecCC
Confidence 677788888875
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.94 E-value=9.3e-28 Score=240.39 Aligned_cols=239 Identities=13% Similarity=0.139 Sum_probs=184.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC------CCCCCCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL------PDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~------~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
..|||||||||||||++++++|+++|+ +|+++++ .+..... ...+...+++++.+|+.+.+.+.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R--------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 72 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVR--------ESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE 72 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECC--------CCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEC--------CCccccchhHHHHHHhhccCCcEEEEeecccchhhhh
Confidence 468999999999999999999999995 9999544 3321100 011123568999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChH
Q 007866 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLM 160 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y 160 (586)
.+++++.|+|+++.. +..++.+++++++.++++++++.||...+. ++.. ...+...+
T Consensus 73 ~~~~~~~vi~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~---------~~~~--~~~~~~~~ 129 (307)
T d1qyca_ 73 AVKNVDVVISTVGSL------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDV---------DNVH--AVEPAKSV 129 (307)
T ss_dssp HHHTCSEEEECCCGG------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCT---------TSCC--CCTTHHHH
T ss_pred hhhhceeeeeccccc------------ccchhhHHHHHHHHhccccceeeecccccc---------cccc--cccccccc
Confidence 999999999998763 344567788999999999999998865432 1211 23445567
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHH
Q 007866 161 CDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEA 240 (586)
Q Consensus 161 ~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~ 240 (586)
...+...|.++.. .+++++++||+++||++.+.+.. +.....++....+++++++.++|+|++|+|++++.+++
T Consensus 130 ~~~~~~~~~~~~~----~~~~~~i~r~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~- 203 (307)
T d1qyca_ 130 FEVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQ-AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVD- 203 (307)
T ss_dssp HHHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTC-TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSS-
T ss_pred ccccccccchhhc----cCCCceecccceecCCCccchhh-hhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhc-
Confidence 7888888888877 48899999999999987554322 33445566667889999999999999999999998887
Q ss_pred hhcccccCCCcE-EEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHHH
Q 007866 241 LDSRMVSVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGV 287 (586)
Q Consensus 241 ~~~~~~~~~g~~-~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~~ 287 (586)
.+...++. |++++++.+|+.|+++.+.+.+|.+.....+|...
T Consensus 204 ----~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~~~~ 247 (307)
T d1qyca_ 204 ----DPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 (307)
T ss_dssp ----CGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEECHHH
T ss_pred ----ChhhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECCHHH
Confidence 44555555 55667789999999999999999998877888653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-26 Score=225.02 Aligned_cols=209 Identities=13% Similarity=0.049 Sum_probs=160.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|++|+|||||||||||++++++|+++|.+ +|+++ .|++.... .....+++...+|+.+.+.+.+++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~--------~R~~~~~~---~~~~~~i~~~~~D~~~~~~~~~~~~~ 80 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLI--------GRRKLTFD---EEAYKNVNQEVVDFEKLDDYASAFQG 80 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEE--------ESSCCCCC---SGGGGGCEEEECCGGGGGGGGGGGSS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEE--------ecChhhhc---ccccceeeeeeecccccccccccccc
Confidence 45689999999999999999999999942 79994 44333111 11234678888999999999999999
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
+|+|||+++......++..++++|+.++.+++++|++.|+++|||+||.+++. .+.++|+.+|
T Consensus 81 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~-----------------~~~~~Y~~~K 143 (232)
T d2bkaa1 81 HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK-----------------SSNFLYLQVK 143 (232)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred cccccccccccccccchhhhhhhcccccceeeecccccCccccccCCcccccc-----------------CccchhHHHH
Confidence 99999999987555567888999999999999999999999999999998752 3346799999
Q ss_pred HHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl-~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
..+|+.+.+. ++ .++|+||+.+||+++... ...+....... .+.+......||++|+|++++.++.
T Consensus 144 ~~~E~~l~~~----~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~I~~~dvA~a~i~~~~--- 211 (232)
T d2bkaa1 144 GEVEAKVEEL----KFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGS-----LPDSWASGHSVPVVTVVRAMLNNVV--- 211 (232)
T ss_dssp HHHHHHHHTT----CCSEEEEEECCEEECTTGGGSHHHHHHHHHHCS-----CCTTGGGGTEEEHHHHHHHHHHHHT---
T ss_pred HHhhhccccc----cccceEEecCceeecCCCcCcHHHHHHHHHhhc-----cCCcccCCCeEEHHHHHHHHHHHHh---
Confidence 9999999884 55 489999999999976532 22333333222 2233444567999999999998876
Q ss_pred cccccCCCcEEEEeC
Q 007866 243 SRMVSVAGMAFFITN 257 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~ 257 (586)
....++.+.+.+
T Consensus 212 ---~~~~~~~~i~~~ 223 (232)
T d2bkaa1 212 ---RPRDKQMELLEN 223 (232)
T ss_dssp ---SCCCSSEEEEEH
T ss_pred ---cCccCCeEEEcH
Confidence 233455666654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.94 E-value=2.1e-27 Score=239.23 Aligned_cols=243 Identities=13% Similarity=0.069 Sum_probs=189.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCC-----CCCCCCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLL-----PDSLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~-----~~~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+||||||||||||++++++|+++|| +|++ +.|++..... ...+...+++++.+|+.|.+.+.+.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~--------~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~ 73 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYV--------LFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL 73 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC-CEEE--------ECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-EEEE--------EECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhc
Confidence 57899999999999999999999995 9999 5554332110 01123457899999999999999999
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHH
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCD 162 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~ 162 (586)
+++++++|+++..... .|..++.+++++|++.+..++++.||.+++.+ .+.. +..|...|..
T Consensus 74 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~--------~~~~--~~~~~~~~~~ 135 (312)
T d1qyda_ 74 KQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD--------IMEH--ALQPGSITFI 135 (312)
T ss_dssp TTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT--------SCCC--CCSSTTHHHH
T ss_pred cCcchhhhhhhhcccc--------cchhhhhHHHHHHHHhcCCcEEEEeeccccCC--------Cccc--ccchhhhhhH
Confidence 9999999999875222 35556788999999998888888998766522 1222 3467778889
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhh
Q 007866 163 LKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALD 242 (586)
Q Consensus 163 sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~ 242 (586)
+|..+|+.... .+++++++||+.+||+........+......++.+.++++|++.++|+|++|+|++++.+++
T Consensus 136 ~~~~~~~~~~~----~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~--- 208 (312)
T d1qyda_ 136 DKRKVRRAIEA----ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSID--- 208 (312)
T ss_dssp HHHHHHHHHHH----TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTT---
T ss_pred HHHHHHHhhcc----cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhc---
Confidence 99888887766 58999999999999986554433333444566667889999999999999999999999987
Q ss_pred cccccCCCcE-EEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCHH
Q 007866 243 SRMVSVAGMA-FFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTG 286 (586)
Q Consensus 243 ~~~~~~~g~~-~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~~ 286 (586)
.+...++. |++++++.+|++|+++.+.+.+|.+.+...+|..
T Consensus 209 --~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~~~ 251 (312)
T d1qyda_ 209 --DPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQ 251 (312)
T ss_dssp --CGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBCSH
T ss_pred --CccccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECCHH
Confidence 45556665 5566667899999999999999999888888765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=3.9e-24 Score=203.79 Aligned_cols=186 Identities=17% Similarity=0.098 Sum_probs=137.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCc-EEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh-cCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKC-IVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL-EGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~-~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l-~~~ 85 (586)
+|||||||||||||++++++|+++|++ +|.+ +.|.+.. ..+. +..+..|..++.+.+ .++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~--------~~r~~~~-------~~~~---~~~~~~d~~~~~~~~~~~~ 63 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA--------PARKALA-------EHPR---LDNPVGPLAELLPQLDGSI 63 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC--------CBSSCCC-------CCTT---EECCBSCHHHHGGGCCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE--------EeCCchh-------hccc---ccccccchhhhhhccccch
Confidence 589999999999999999999999964 4665 4554331 1122 344555655555444 458
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHH
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLK 164 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK 164 (586)
|+|||++|.. ....+...+.+.|+.++.+++++|++.++++++|+||.++++ .+.+.|+.+|
T Consensus 64 d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~-----------------~~~~~y~~~K 126 (212)
T d2a35a1 64 DTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA-----------------KSSIFYNRVK 126 (212)
T ss_dssp SEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT-----------------TCSSHHHHHH
T ss_pred heeeeeeeeeccccccccccccchhhhhhhccccccccccccccccccccccc-----------------ccccchhHHH
Confidence 9999999876 234456789999999999999999999999999999998762 3457899999
Q ss_pred HHHHHHHHhhcCCCCc-eEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHH
Q 007866 165 AQAEALVLFANNIDGL-LTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 165 ~~~E~~l~~~~~~~gl-~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale 239 (586)
..+|+.+++. ++ +++++||+.+||+.++..+...+ ..... ... ....+.||++|+|++++.+++
T Consensus 127 ~~~E~~l~~~----~~~~~~I~Rp~~v~G~~~~~~~~~~~---~~~~~-~~~---~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 127 GELEQALQEQ----GWPQLTIARPSLLFGPREEFRLAEIL---AAPIA-RIL---PGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHHTTS----CCSEEEEEECCSEESTTSCEEGGGGT---TCCCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhcccc----ccccceeeCCcceeCCcccccHHHHH---HHHHh-hcc---CCCCcEEEHHHHHHHHHHHHc
Confidence 9999998763 54 59999999999998764333221 11111 111 123567999999999998887
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=1.5e-24 Score=209.61 Aligned_cols=229 Identities=15% Similarity=0.056 Sum_probs=168.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.|++|||||||||||++++++|+++|+ +.|++ +.|++++. .. ...+++++.+|+.|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~--------~~R~~~~~---~~-~~~~~~~~~~d~~~~~~~~~~~~~~ 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG--------LVRSAQGK---EK-IGGEADVFIGDITDADSINPAFQGI 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE--------EESCHHHH---HH-TTCCTTEEECCTTSHHHHHHHHTTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEE--------EcCCHHHH---Hh-ccCCcEEEEeeeccccccccccccc
Confidence 478999999999999999999999996 23555 34443311 00 1246889999999999999999999
Q ss_pred CEEEEcccCCC----------------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 86 STVFYVDATDL----------------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 86 D~Vih~aa~~~----------------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
|+|||+|+... ...+......+|+.++.++++.+...+.+++.+.|+...+...
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---------- 139 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPD---------- 139 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTT----------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCC----------
Confidence 99999998641 1223567788999999999999999999999999988765321
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
.+....+...|...+...+.+... .|++++++||+.+||+.....- ....... . ......+++|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilRp~~v~g~~~~~~~-----~~~~~~~-~---~~~~~~~~i~~~D 206 (252)
T d2q46a1 140 HPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVRE-----LLVGKDD-E---LLQTDTKTVPRAD 206 (252)
T ss_dssp CGGGGGGGCCHHHHHHHHHHHHHH----SSSCEEEEEECEEECSCTTSSC-----EEEESTT-G---GGGSSCCEEEHHH
T ss_pred cccccccccchhhhhhhhhhhhhc----ccccceeecceEEECCCcchhh-----hhhccCc-c---cccCCCCeEEHHH
Confidence 111334566788888877777666 6899999999999999754210 0000000 0 1233467999999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCC---CcCHHHHHHHHHHHcC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE---PIKFWDFLSIILEGLG 275 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~---~~t~~ei~~~i~~~~g 275 (586)
+|++++.+++ .+...|++|||+++. ..++.|+.+++++..+
T Consensus 207 va~a~~~~l~-----~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 207 VAEVCIQALL-----FEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHHTT-----CGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHhC-----CccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 9999999988 567789999998743 4667788777765443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.89 E-value=2.5e-23 Score=213.66 Aligned_cols=240 Identities=15% Similarity=0.026 Sum_probs=174.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhcCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEGA 85 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~~~ 85 (586)
..|+|+|||||||||++++++|+++| ++|++ +.|++++.........++++.+.+|+.| .+.+..++.++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~--------l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~ 72 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRA--------QVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA 72 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEE--------EESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEE--------EECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC
Confidence 46899999999999999999999999 49999 5665442211111234589999999988 45577889999
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHH
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKA 165 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~ 165 (586)
|++++...... ..|+..+.|++++|+++|++++++.||....... ...+..+|..+|.
T Consensus 73 ~~~~~~~~~~~---------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~-------------~~~~~~~~~~~k~ 130 (350)
T d1xgka_ 73 HLAFINTTSQA---------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY-------------GPWPAVPMWAPKF 130 (350)
T ss_dssp SEEEECCCSTT---------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT-------------SSCCCCTTTHHHH
T ss_pred ceEEeeccccc---------chhhhhhhHHHHHHHHhCCCceEEEeeccccccC-------------CcccchhhhhhHH
Confidence 99998764421 2356778999999999999899988887554211 2244567788999
Q ss_pred HHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHH-HHhcCCCc-eEEEcCCCccccccch-hHHHHHHHHHHHHhh
Q 007866 166 QAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLV-NLAKPGWT-KFIIGSGENMSDFTYV-ENVAHAHVCAAEALD 242 (586)
Q Consensus 166 ~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~-~~~~~g~~-~~i~g~g~~~~~~i~v-~Dva~ai~~ale~~~ 242 (586)
..|.++.+ .+++++++||+..++.......+.+. .....+.. ...+.+++..++++++ +|+++++..+++..
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~- 205 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG- 205 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHh----hccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC-
Confidence 99988877 47889999999988754321111111 11223322 2445567888888886 79999999988631
Q ss_pred cccccCCCcEEEEeCCCCcCHHHHHHHHHHHcCCCCCCccCCH
Q 007866 243 SRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPT 285 (586)
Q Consensus 243 ~~~~~~~g~~~ni~~~~~~t~~ei~~~i~~~~g~~~~~i~vp~ 285 (586)
.....|+.|++++ +.+|+.|+++.+.+.+|++.....+|.
T Consensus 206 --~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 206 --PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp --HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred --hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 1235788999987 579999999999999999876666664
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=6e-17 Score=155.89 Aligned_cols=211 Identities=14% Similarity=0.087 Sum_probs=150.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..++|+++||||++-||+.++++|.++| ++|.+.| |+.+. ..++..+.+|+.|++++.++++
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~--------r~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~ 66 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTH--------RGSGA--------PKGLFGVEVDVTDSDAVDRAFTA 66 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEE--------SSSCC--------CTTSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEE--------CCcch--------hcCceEEEEecCCHHHHHHHHHH
Confidence 3568999999999999999999999999 5999954 43331 2356789999999988877664
Q ss_pred ------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+.|++||+||.. .+..+++..+++|+.++..+.+++ ++.+-.++|++||.....
T Consensus 67 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~--------- 137 (237)
T d1uzma1 67 VEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW--------- 137 (237)
T ss_dssp HHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------
T ss_pred HHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc---------
Confidence 489999999976 234567889999999987776544 456667999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+.....+|+.||+..+.+.+.++.+ +|+++.++.||.+..+..........+...+.. +..-
T Consensus 138 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~---------pl~R 202 (237)
T d1uzma1 138 ------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFI---------PAKR 202 (237)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGC---------TTCS
T ss_pred ------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcC---------CCCC
Confidence 1234568999999999887776532 689999999999865421111122222222211 1223
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+|.++..++. ....-..|+++.+.+|-
T Consensus 203 ~~~pedvA~~v~fL~S---~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 203 VGTPAEVAGVVSFLAS---EDASYISGAVIPVDGGM 235 (237)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred CcCHHHHHHHHHHHhC---chhcCCcCCeEEECCCC
Confidence 5679999999987663 11345789999998874
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=6.9e-17 Score=156.05 Aligned_cols=215 Identities=13% Similarity=0.047 Sum_probs=154.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||+.++++|.++| ++|.+.|+.. + .+.+.....+...+.+|+.|++++.++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~--------~--~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 72 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEE--------G--PLREAAEAVGAHPVVMDVADPASVERGFAEAL 72 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------H--HHHHHHHTTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------H--HHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 5999955432 2 11111122357889999999998887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
+.|++||+||... ...+++..+++|+.++.++.+++.. .+-.+++++||.+..
T Consensus 73 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~------------ 140 (242)
T d1ulsa_ 73 AHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL------------ 140 (242)
T ss_dssp HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG------------
T ss_pred HhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc------------
Confidence 4899999999761 2346788999999999998887654 344567777775433
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+.....+|+.+|...+.+.+.++. .+|+++.++.||.+-.+..........+...+..+ ..-+.
T Consensus 141 ----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R~~ 207 (242)
T d1ulsa_ 141 ----GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP---------LGRAG 207 (242)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT---------TCSCB
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCC---------CCCCC
Confidence 123456899999999988776643 26899999999999776544443444444333322 12245
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..+|+|.+++.++. ....-..|+++.+.+|..
T Consensus 208 ~pedia~~v~fL~S---~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 208 KPLEVAYAALFLLS---DESSFITGQVLFVDGGRT 239 (242)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhc---hhhCCCCCcEEEECCCcc
Confidence 68999999987663 113457899999988754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=5.8e-17 Score=156.69 Aligned_cols=217 Identities=12% Similarity=0.069 Sum_probs=155.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||++-||++++++|.++| ++|.+.|+.. ++. ...+.+ ..+...+.+|++|++++.++++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~--------~~l~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSE--------NGAQAISDYL-GANGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHH-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCH--------HHHHHHHHHh-CCCCcEEEEEecCHHHhhhhhhh
Confidence 357999999999999999999999999 5999855432 210 001111 2357889999999988877664
Q ss_pred ------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+.|++||+|+.. ....+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 72 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~--------- 142 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM--------- 142 (243)
T ss_dssp HHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred hhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC---------
Confidence 489999999976 1345678899999999998888774 34556999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+.....+|+.||...+.+.+.++. .+|+++.++.||.+-.+......+.......+..+ ..-
T Consensus 143 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R 207 (243)
T d1q7ba_ 143 ------GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVP---------AGR 207 (243)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCT---------TSS
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhcCC---------CCC
Confidence 123356899999999988877653 26899999999988544222223333333333222 223
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+|.++..++. .......|+++.+.+|.
T Consensus 208 ~~~pedvA~~v~fL~S---~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 208 LGGAQEIANAVAFLAS---DEAAYITGETLHVNGGM 240 (243)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhC---chhcCCcCCeEEECCCe
Confidence 5679999999987763 11345789999998874
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.64 E-value=6.7e-16 Score=149.90 Aligned_cols=221 Identities=12% Similarity=0.034 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.++|.++||||++-||+.++++|.++| ++|.+.|+.... +... ...+.. ...++..+.+|++|++++.++++
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~-l~~~--~~~l~~--~g~~~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKS-CDSV--VDEIKS--FGYESSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHH-HHHH--HHHHHT--TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 457999999999999999999999999 599996554310 0000 000101 12468899999999998887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.|++||+|+... ...+++..+++|+.++.++.+++. +.+-.++|++||....-
T Consensus 82 ~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~---------- 151 (251)
T d2c07a1 82 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT---------- 151 (251)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------
T ss_pred HHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC----------
Confidence 5899999999761 234678999999999988877653 44567999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+.....+|+.||+..+.+.+.++. .+|+++.++.||.+-.+......+...+...+..+ ..-+
T Consensus 152 -----~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~p---------l~R~ 217 (251)
T d2c07a1 152 -----GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP---------AGRM 217 (251)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT---------TSSC
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCC---------CCCC
Confidence 123356899999999999887753 36899999999999876544444445554444332 1225
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+|+|.+++.++. ....-..|+++.+.+|-
T Consensus 218 ~~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 218 GTPEEVANLACFLSS---DKSGYINGRVFVIDGGL 249 (251)
T ss_dssp BCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhC---chhCCCcCcEEEECCCc
Confidence 669999999887663 11345789999998763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=6e-16 Score=149.35 Aligned_cols=212 Identities=15% Similarity=0.090 Sum_probs=151.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||++-||+.+++.|+++| ++|.+.|+.. ++. ...+.+ ..+...+.+|+.|++++.++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILD--------EEGKAMAAEL-ADAARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHHT-GGGEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-hCcceEEEeecCCHHHHHHHHHH
Confidence 457999999999999999999999999 5999955533 210 000111 2467889999999988877664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+||... +..+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 74 ~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 144 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA--------- 144 (244)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------
T ss_pred HHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc---------
Confidence 4899999999862 234578899999999988887553 33456899999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+-.+..... .... ...+..-
T Consensus 145 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~--------~~~~------~~~pl~R 204 (244)
T d1nffa_ 145 ------GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--------PEDI------FQTALGR 204 (244)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--------CTTC------SCCSSSS
T ss_pred ------ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh--------hHHH------HhccccC
Confidence 123356899999999998877653 3689999999998865432111 0000 0112233
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+|.+++.++. .......|+++.+.+|.
T Consensus 205 ~~~p~diA~~v~fL~s---~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 205 AAEPVEVSNLVVYLAS---DESSYSTGAEFVVDGGT 237 (244)
T ss_dssp CBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhC---hhhCCCcCCEEEECCCe
Confidence 6789999999987663 11345789999998874
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=6.9e-16 Score=149.40 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=151.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|++|||||++-||+.+++.|.++| ++|.+.|+.. +.... ....+...+.+|++|.+++.++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~--------~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 71 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRP--------EGKEV---AEAIGGAFFQVDLEDERERVRFVEEAA 71 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESST--------THHHH---HHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHH---HHHcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999 5999955432 21111 112246788999999988777664
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
+.|++||+||... +..+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------- 140 (248)
T d2d1ya1 72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------- 140 (248)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS-----------
T ss_pred HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc-----------
Confidence 5899999999761 234578899999999998888774 34556999999997752
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc----eEEEcCCCcc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT----KFIIGSGENM 221 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~----~~i~g~g~~~ 221 (586)
+.....+|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+. +.+....+.. .....+..+.
T Consensus 141 ----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~-------~~~~~~~~~~~~~~~~~~~~~~pl 209 (248)
T d2d1ya1 141 ----AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA-------VLEAIALSPDPERTRRDWEDLHAL 209 (248)
T ss_dssp ----BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------HHHHHC--------CHHHHTTSTT
T ss_pred ----cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCch-------HHHHhhcCCCHHHHHHHHHhcCCC
Confidence 1234568999999999887766432 68999999999885431 1111111000 0000111222
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
.-+...+|+|.++..++. ....-..|+++.+.+|-.-
T Consensus 210 ~R~~~pedia~~v~fL~S---~~s~~itG~~i~vDGG~ta 246 (248)
T d2d1ya1 210 RRLGKPEEVAEAVLFLAS---EKASFITGAILPVDGGMTA 246 (248)
T ss_dssp SSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhC---chhcCCCCcEEEcCcCccc
Confidence 335679999999987663 1134578999999887543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.3e-16 Score=153.56 Aligned_cols=224 Identities=15% Similarity=0.086 Sum_probs=154.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||+.++++|.++| ++|.+.|+.... +... ...+.+.....++.++.+|++|++++.++++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEA-GVQC--KAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 47999999999999999999999999 599996654321 0000 0011112223468899999999988877664
Q ss_pred ----CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHh----CC---CCEEEEecCccccccCCCCCCCCCCCccc
Q 007866 84 ----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE----CK---VRRLVYNSTADVVFDGSHDIHNGDETLTC 152 (586)
Q Consensus 84 ----~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~----~g---vkr~I~~SS~~vyg~~~~~~~~~~E~~p~ 152 (586)
+.|++||+|+.. ...+++..+++|+.++.++..++.. .+ -.++|++||...+-
T Consensus 78 ~~~G~iDilVnnAg~~-~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------------- 141 (254)
T d2gdza1 78 DHFGRLDILVNNAGVN-NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------- 141 (254)
T ss_dssp HHHSCCCEEEECCCCC-CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred HHcCCcCeeccccccc-ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------------
Confidence 589999999986 4567899999999988877776643 22 24699999987641
Q ss_pred CCCCCChHHHHHHHHHHHHHh------hcCCCCceEEEEeCCCcccCCCCCcH--------HHHHHHhcCCCceEEEcCC
Q 007866 153 CWKFQDLMCDLKAQAEALVLF------ANNIDGLLTCALRPSNVFGPGDTQLV--------PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 153 ~~~p~~~Y~~sK~~~E~~l~~------~~~~~gl~~~ilRp~~v~G~~~~~~~--------~~l~~~~~~g~~~~i~g~g 218 (586)
+.....+|+.||...+.+.+. +.+ +|+++.++.||.+-.+...... ....+.+.+.
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~-~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--------- 211 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMN-SGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM--------- 211 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH---------
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhc---------
Confidence 123346899999999888663 333 7999999999988532100000 0000111000
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcCHHH
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWD 265 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t~~e 265 (586)
.+..-+...+|+|++++.++. .+...|+++.|.+|..+.++|
T Consensus 212 ~p~~r~~~pedvA~~v~fL~s-----~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 212 IKYYGILDPPLIANGLITLIE-----DDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp HHHHCCBCHHHHHHHHHHHHH-----CTTCSSCEEEEETTTEEEECC
T ss_pred CCCCCCcCHHHHHHHHHHHHc-----CCCCCCCEEEECCCCeeeccc
Confidence 011124568999999998887 356889999999988766544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.63 E-value=2e-15 Score=146.54 Aligned_cols=218 Identities=14% Similarity=0.078 Sum_probs=150.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||++++++|+++| ++|.+.|+.... +. ...+.+ ..++.++.+|+.|++++.++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~-~~------~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~ 73 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEE-GA------ATAREL-GDAARYQHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH------HHHHTT-GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH------HHHHHh-CCceEEEEcccCCHHHHHHHHHHH
Confidence 468999999999999999999999999 589996554310 00 000111 2468899999999988887764
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.++.++.+++. +.+-.++|++||...+.
T Consensus 74 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~---------- 143 (254)
T d1hdca_ 74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------
Confidence 5899999999762 234578899999999998888664 44557999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.+|...+.+.+.++. .+|+++.++-||.+-.+. +.+....... .... ..+..-+
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~-------~~~~~~~~~~-~~~~-~~pl~R~ 209 (254)
T d1hdca_ 144 -----GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM-------TAETGIRQGE-GNYP-NTPMGRV 209 (254)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH-------HHHHTCCCST-TSCT-TSTTSSC
T ss_pred -----cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc-------chhcCHHHHH-HHHh-CCCCCCC
Confidence 123356899999999988887753 368999999999885431 1111111000 0000 0111112
Q ss_pred -cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 225 -TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 225 -i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+|+|.+++.++. ....-..|+++.+.+|.
T Consensus 210 g~~PedvA~~v~fL~S---~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLS---DTSSYVTGAELAVDGGW 242 (254)
T ss_dssp B-CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTT
T ss_pred CCCHHHHHHHHHHHhc---hhhCCCCCceEEeCCCc
Confidence 347999999987663 11345789999998875
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.8e-15 Score=146.16 Aligned_cols=220 Identities=17% Similarity=0.119 Sum_probs=155.2
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIK 79 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~ 79 (586)
|++ ...+|+++||||++.||+.++++|.++| ++|.+.|+.. ++- ..... ..++..+.+|+.|.++++
T Consensus 1 M~~-~L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~--------~~l~~~~~~--~~~~~~~~~Dv~d~~~v~ 68 (244)
T d1pr9a_ 1 MEL-FLAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQ--------ADLDSLVRE--CPGIEPVCVDLGDWEATE 68 (244)
T ss_dssp CCC-CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH--STTCEEEECCTTCHHHHH
T ss_pred CCC-CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCH--------HHHHHHHHh--cCCCeEEEEeCCCHHHHH
Confidence 543 2578999999999999999999999999 4999955432 210 00111 135788999999999999
Q ss_pred HHhc---CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCCCC
Q 007866 80 KVLE---GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 80 ~~l~---~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
++++ +.|++||+|+... +..+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 69 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------- 141 (244)
T d1pr9a_ 69 RALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------- 141 (244)
T ss_dssp HHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------
T ss_pred HHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-------
Confidence 8886 4799999999862 3456788999999999888776543 2456899999987642
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.||...+.+.+.++. .+|+++.++.||.+..+..... -+...+...+..|
T Consensus 142 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p-------- 205 (244)
T d1pr9a_ 142 --------AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP-------- 205 (244)
T ss_dssp --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCT--------
T ss_pred --------cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCC--------
Confidence 123356899999999988877753 2689999999999875421111 1122222322221
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.++..++. ....-..|+++.+.+|-
T Consensus 206 -l~R~~~peevA~~v~fL~S---~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 206 -LGKFAEVEHVVNAILFLLS---DRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp -TCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred -CCCCcCHHHHHHHHHHHhC---chhCCcCCcEEEECccH
Confidence 2235679999999987663 11345789999998763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.61 E-value=3.5e-15 Score=144.34 Aligned_cols=220 Identities=11% Similarity=0.081 Sum_probs=149.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|.++||||++-||+.+++.|.++| ++|.+.|+.... . ..... + ....++..+.+|++|++++.++++
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~---~--~~~~~-~-~~g~~~~~~~~Dvs~~~~v~~~~~~~ 74 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAP---E--AEAAI-R-NLGRRVLTVKCDVSQPGDVEAFGKQV 74 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCH---H--HHHHH-H-HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchH---H--HHHHH-H-HcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 599986654310 0 00000 0 123578899999999998877653
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 75 ~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---------- 144 (247)
T d2ew8a1 75 ISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------- 144 (247)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------
T ss_pred HHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------
Confidence 5899999999862 345688999999999988887664 44556999999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc-HHHHHHHhcCCCceEEEcCCCcccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL-VPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~-~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+.....+|+.||...+.+.+.++. .+|+++.++.||.+-.+..... .....+.. .....+..-
T Consensus 145 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~--------~~~~~~l~r 211 (247)
T d2ew8a1 145 -----KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVL--------PNMLQAIPR 211 (247)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------CTTSSSCS
T ss_pred -----cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHH--------HHHhccCCC
Confidence 123346899999998888777653 3689999999999876532211 11111111 011112223
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+...+|+|++++.++. ....-..|+++.+.+|.
T Consensus 212 ~~~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLAS---DDASFITGQTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTS---GGGTTCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHhC---chhcCCcCCeEEECCCE
Confidence 5668999999986653 11345789999998864
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.7e-15 Score=147.34 Aligned_cols=220 Identities=10% Similarity=0.067 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||++++++|.++| ++|.+.|+.... +... ...+.. ...++..+.+|+.|++++.++++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-~~~~--~~~l~~--~g~~~~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADA-ANHV--VDEIQQ--LGGQAFACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHH--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 599995543210 0000 000100 13468899999999988876653
Q ss_pred ----CCCEEEEcccCCC------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 ----~~D~Vih~aa~~~------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+||... ...+++..+++|+.++.++.+++.. .+-.++|++||.....
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~------------ 151 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN------------ 151 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------------
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc------------
Confidence 5899999999762 2345788999999999888876543 3445899999987642
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-CcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~-~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.+|...+.+.+.++. .+|+++.++-||.+-.+... ..-+...+...+..+ ..-+.
T Consensus 152 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~p---------l~R~g 219 (255)
T d1fmca_ 152 ---KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP---------IRRLG 219 (255)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS---------SCSCB
T ss_pred ---cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCC---------CCCCc
Confidence 123456899999999988877653 37899999999998654211 122333333333222 12345
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+|+|.+++.++. ....-..|+++.+.+|.
T Consensus 220 ~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCS---PAASWVSGQILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhC---chhcCCcCCEEEECcCc
Confidence 68999999987663 11345789999998875
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.60 E-value=1.1e-15 Score=147.44 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||++.||+.++++|.++| ++|.+.|+.. ++. ...+ ...++..+.+|+.|.++++++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~--------~~l~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 72 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTN--------SDLVSLAK--ECPGIEPVCVDLGDWDATEKALGGI 72 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHH--HSTTCEEEECCTTCHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHH--hcCCCeEEEEeCCCHHHHHHHHHHc
Confidence 57999999999999999999999999 5999955432 210 0001 12367889999999999999887
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
+.|++||+||... ...+++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 73 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------- 139 (242)
T d1cyda_ 73 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------- 139 (242)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-------------
Confidence 3799999999761 3445788999999999998876543 2345899999987642
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC--CcHHHHHHHhcCCCceEEEcCCCcccccc
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFT 225 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~--~~~~~l~~~~~~g~~~~i~g~g~~~~~~i 225 (586)
+......|+.+|...+.+.+.++. .+|+++.++-||.+-.+... ..-+...+...+.. +..-+.
T Consensus 140 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~---------pl~R~~ 208 (242)
T d1cyda_ 140 --TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH---------PLRKFA 208 (242)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS---------TTSSCB
T ss_pred --cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcC---------CCCCCc
Confidence 122356899999999998887754 26899999999988644211 00112222222211 122356
Q ss_pred chhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 226 YVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 226 ~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..+|+|.+++.++. ....-..|+++.+.+|.
T Consensus 209 ~peeva~~v~fL~S---~~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 209 EVEDVVNSILFLLS---DRSASTSGGGILVDAGY 239 (242)
T ss_dssp CHHHHHHHHHHHHS---GGGTTCCSSEEEESTTG
T ss_pred CHHHHHHHHHHHhC---chhcCcCCceEEeCcch
Confidence 79999999987663 11345789999998763
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.60 E-value=2.9e-15 Score=145.26 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.+++.|.++| ++|.+.|+.... + +. .....-...++.++.+|+.|++++.++++
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~-~---~~--~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDV-G---EK--AAKSVGTPDQIQFFQHDSSDEDGWTKLFDAT 76 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-H---HH--HHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-H---HH--HHHHhCCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 589996554310 0 00 00001123578999999999988876664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCC-EEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVR-RLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvk-r~I~~SS~~vyg~~~~~~~~~ 146 (586)
++|++||+|+... +..+++..+++|+.++.++.+++. +.+-. ++|++||...+-
T Consensus 77 ~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------- 147 (251)
T d1zk4a1 77 EKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------- 147 (251)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------
T ss_pred HHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------
Confidence 5899999999861 234567899999999999888764 34443 899999987641
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcCCCc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~-----~~~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~g~~ 220 (586)
+......|+.+|...+.+.+.++ ..+|+++.++.||.+-.+...... +......... .+
T Consensus 148 ------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~---------~p 212 (251)
T d1zk4a1 148 ------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTK---------TP 212 (251)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTT---------CT
T ss_pred ------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhC---------CC
Confidence 11234689999999998877654 347999999999998654211111 1111111111 11
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++. ....-..|+.+.+.+|-
T Consensus 213 l~R~~~pedvA~~v~fL~S---~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 213 MGHIGEPNDIAYICVYLAS---NESKFATGSEFVVDGGY 248 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhC---chhCCCcCcEEEECccc
Confidence 2235679999999987653 11345789999998763
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.60 E-value=9.6e-16 Score=149.66 Aligned_cols=228 Identities=10% Similarity=0.102 Sum_probs=149.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC---CCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS---LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~---l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+.+|+++||||++-||+.++++|+++| ++|.+.++.....+. ..... ....++.++.+|+.|++++.+++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~------~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~ 74 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIE------KVRAGLAAQHGVKVLYDGADLSKGEAVRGLV 74 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHH------HHHHHHHHHHTSCEEEECCCTTSHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHH------HHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 357999999999999999999999999 599984443210000 00000 11346888999999999888776
Q ss_pred c-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ +.|++||+||.. .+..+++..+++|+.++.++.+++ ++.+-.++|++||.....
T Consensus 75 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~------- 147 (260)
T d1x1ta1 75 DNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------- 147 (260)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------
T ss_pred HHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-------
Confidence 4 489999999976 234567899999999998877665 444556999999997652
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc---eEEEcCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGSG 218 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~---~~i~g~g 218 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+.................. .......
T Consensus 148 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 148 --------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHH
T ss_pred --------ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhc
Confidence 123356899999999888776643 37899999999998655322221111110000000 0000111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
.+..-+...+|+|.+++.++. ....-..|+++.+.+|
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S---~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLAS---DAAAQITGTTVSVDGG 256 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTT
T ss_pred CCCCCCcCHHHHHHHHHHHhC---hhhCCCcCCEEEECcc
Confidence 122336679999999987663 1134578999999886
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.59 E-value=1.2e-15 Score=147.14 Aligned_cols=216 Identities=15% Similarity=0.072 Sum_probs=151.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||++.||+.+++.|.++| ++|.+.++. .++. ...+. ...++.++++|++|++++.++++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~--------~~~~~~~~~~-~~~~~~~~~~Dls~~~~i~~~~~~i 73 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDRE--------ERLLAEAVAA-LEAEAIAVVADVSDPKAVEAVFAEA 73 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC--------HHHHHHHHHT-CCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------HHHHHHHHHH-cCCceEEEEecCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 599995443 2210 00011 13467889999999998877664
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+|+.. .+..++...+++|+.++.++.+++... +-+.++.+||.+..
T Consensus 74 ~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~------------- 140 (241)
T d2a4ka1 74 LEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL------------- 140 (241)
T ss_dssp HHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------
T ss_pred HHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------
Confidence 489999999876 124457889999999999999887654 23355555555432
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccc
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTY 226 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~ 226 (586)
+......|+.+|+..|.+.+.++. .+|+++.++.||.+=.+......+...+...+..+ ..-+..
T Consensus 141 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p---------~~r~~~ 208 (241)
T d2a4ka1 141 ---GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP---------LGRAGR 208 (241)
T ss_dssp ---CHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST---------TCSCBC
T ss_pred ---cccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCC---------CCCCcC
Confidence 112245799999999999887753 36899999999998554333333333443333222 123557
Q ss_pred hhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 227 VENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 227 v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.+|+|++++.++. +...-..|+++.+.+|..
T Consensus 209 p~dva~~v~fL~S---~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLS---EESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHS---GGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhc---chhCCCcCceEEeCCCcc
Confidence 9999999987763 113457899999988764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.59 E-value=7.6e-16 Score=150.00 Aligned_cols=228 Identities=13% Similarity=0.107 Sum_probs=152.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++.||+.+++.|+++| ++|.+.|+.... +. .....+ ..++..+.+|++|++++.++++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~------~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~ 74 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEA-AR------ATAAEI-GPAACAIALDVTDQASIDRCVAELL 74 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHH-HH------HHHHHH-CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH------HHHHHh-CCceEEEEeeCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 599996554210 00 000111 3468889999999998887764
Q ss_pred ----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||... ...+++..+++|+.|+.++.+++.. .+-.++|++||.+.+-
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------- 144 (256)
T d1k2wa_ 75 DRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---------- 144 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc----------
Confidence 5899999999762 3445788999999999888875432 2345899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCC--CceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPG--WTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g--~~~~i~g~g~~~~ 222 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..........+..... ..........+..
T Consensus 145 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg 219 (256)
T d1k2wa_ 145 -----GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFG 219 (256)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTS
T ss_pred -----ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCC
Confidence 123356899999999988876653 368999999999886553211111111110000 0000000001122
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
-+...+|+|.+++.++. ....-..|+++.+.+|.-+
T Consensus 220 R~~~p~evA~~v~fL~S---~~a~~iTG~~i~vDGG~~m 255 (256)
T d1k2wa_ 220 RMGRAEDLTGMAIFLAT---PEADYIVAQTYNVDGGNWM 255 (256)
T ss_dssp SCBCHHHHHHHHHHTTS---GGGTTCCSCEEEESTTSSC
T ss_pred CCcCHHHHHHHHHHHhC---chhCCccCceEEECcchhh
Confidence 35668999999986542 1134578999999888654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=3.2e-15 Score=144.95 Aligned_cols=223 Identities=16% Similarity=0.124 Sum_probs=152.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++.||+.++++|+++| ++|.+.|+.... +... ...+.+. ...++..+.+|+.|++++.++++
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~~~~--~~~l~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEE-ASEA--AQKLTEK-YGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHHH-hCCcEEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599996554210 0000 0000000 13467889999999988877664
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||.. .+..+++..+++|+.++.++.+++.. .+-.++|++||......
T Consensus 78 ~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~--------- 148 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV--------- 148 (251)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc---------
Confidence 589999999976 13446788999999999888887644 45569999998754210
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+...... +...+...+..+ ..
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p---------l~ 214 (251)
T d1vl8a_ 149 -----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP---------LG 214 (251)
T ss_dssp -----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT---------TS
T ss_pred -----cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCC---------CC
Confidence 112346899999999998877653 26899999999999765432111 122222222221 12
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
-+...+|+|++++.++. ....-..|+++.+.+|.
T Consensus 215 R~~~pedvA~~v~fL~S---~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLAS---EEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp SCBCGGGGHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhC---chhCCCcCcEEEeCcCe
Confidence 24568999999986653 11345789999998764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.59 E-value=3e-15 Score=145.76 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||+.++++|+++| ++|.+.|+.... +... ...+.......++..+.+|+.|++++.++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-l~~~--~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEG-LEAS--KAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999 599996554310 0000 0000011123468889999999998877663
Q ss_pred ----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.|++||+||... +..+++..+++|+.++.++.+++. +.+-.++|++||...+-
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---------- 148 (258)
T d1iy8a_ 79 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR---------- 148 (258)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc----------
Confidence 5899999999641 234578899999999999888663 33556899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC--------CcHHHHHHHhcCCCceEEEc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT--------QLVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~--------~~~~~l~~~~~~g~~~~i~g 216 (586)
+.....+|+.+|...+.+.+.++. .+|+++.++-||.+..+... .......+...+..
T Consensus 149 -----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~------ 217 (258)
T d1iy8a_ 149 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN------ 217 (258)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcC------
Confidence 123457899999998888776643 36899999999998643210 01111222222221
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..-+...+|+|.+++.++. ....-..|+++.+.+|..
T Consensus 218 ---pl~R~~~p~dvA~~v~fL~S---~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 218 ---PSKRYGEAPEIAAVVAFLLS---DDASYVNATVVPIDGGQS 255 (258)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTTT
T ss_pred ---CCCCCcCHHHHHHHHHHHhC---chhcCCcCceEEcCcchh
Confidence 12235679999999886653 113457899999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.58 E-value=2.8e-15 Score=146.34 Aligned_cols=224 Identities=16% Similarity=0.162 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC---CCCCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL---SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l---~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
.+|++|||||++-||+.++++|+++| ++|.+.|+.. ++. ...+.+ ...++..+.+|++|++++.+++
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~--------~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~ 78 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSA--------ADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTI 78 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSC--------TTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHH
Confidence 57999999999999999999999999 5999955542 210 000000 1346889999999999887776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh-----CCCCEEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE-----CKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~-----~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
+ +.|++||+|+... +..+++..+++|+.|+.++.+++.. .+-.+++..||........
T Consensus 79 ~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~--- 155 (260)
T d1h5qa_ 79 QQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ--- 155 (260)
T ss_dssp HHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE---
T ss_pred HHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc---
Confidence 4 4799999999761 2345788999999999888775533 2344566666665532111
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGEN 220 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~ 220 (586)
...........|+.+|...+.+.+.++. .+|+++.++.||.+-.+......+...+...+..+
T Consensus 156 -----~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p--------- 221 (260)
T d1h5qa_ 156 -----SSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP--------- 221 (260)
T ss_dssp -----EETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT---------
T ss_pred -----cccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCC---------
Confidence 0001123456899999999988877653 36899999999998655433333344443333222
Q ss_pred cccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 221 MSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 221 ~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++. ....-..|+++.+.+|.
T Consensus 222 l~R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 222 LNRFAQPEEMTGQAILLLS---DHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp TSSCBCGGGGHHHHHHHHS---GGGTTCCSCEEEECTTG
T ss_pred CCCCcCHHHHHHHHHHHhc---chhCCCcCceEEECCCe
Confidence 1225568999999887663 11244789999998875
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.57 E-value=6.1e-15 Score=143.61 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=151.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
+|.+|||||++-||+.++++|.++| ++|.+.|+.... +... ...+.. ...++..+.+|++|++++.++++
T Consensus 2 gKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-l~~~--~~~l~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEG-LRTT--LKELRE--AGVEADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999 599995554210 0000 000100 13468899999999998887764
Q ss_pred ---CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh------CCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ---GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE------CKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ---~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~------~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.|++||+||.. ....+++..+++|+.++.++.+++.. .+-.++|++||...+.
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~---------- 145 (257)
T d2rhca1 76 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ---------- 145 (257)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS----------
T ss_pred HhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc----------
Confidence 489999999976 13445789999999999999998754 2445899999987642
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC-----------CcHHHHHHHhcCCCceE
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT-----------QLVPLLVNLAKPGWTKF 213 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~-----------~~~~~l~~~~~~g~~~~ 213 (586)
+.....+|+.+|+..+.+.+.++. .+|+++.++-||.+-.+... ...+...+.+.+..|
T Consensus 146 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~P-- 218 (257)
T d2rhca1 146 -----GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP-- 218 (257)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTST--
T ss_pred -----ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCC--
Confidence 123356899999999988877653 36899999999988543211 112222333333222
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..-+...+|+|.+++.++. .......|+++.+.+|
T Consensus 219 -------lgR~~~pedia~~v~fL~S---~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 219 -------IGRYVQPSEVAEMVAYLIG---PGAAAVTAQALNVCGG 253 (257)
T ss_dssp -------TSSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred -------CCCCcCHHHHHHHHHHHhC---chhcCCcCceEEECcC
Confidence 1235669999999986653 1135678999999876
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.57 E-value=6.5e-15 Score=143.34 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
..+|++|||||++-||+.++++|+++| ++|.+.++.... +. ...+.+ ....+..+.+|+.|.++++++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~-l~------~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKE-LD------ECLEIWREKGLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH------HHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH------HHHHHHHhcCCCceEEEeecCCHHHHHHHHH
Confidence 468999999999999999999999999 599995543210 00 000001 23467788999999988776552
Q ss_pred -------C-CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCC
Q 007866 84 -------G-ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 84 -------~-~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ .|++||+|+... ...++...+++|+.++.++.+++. +.+..++|++||.....
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------- 148 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------- 148 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-------
Confidence 3 799999999762 345688999999999988887664 33567999999997742
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCc------HHHHHHHhcCCCceEEE
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQL------VPLLVNLAKPGWTKFII 215 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~------~~~l~~~~~~g~~~~i~ 215 (586)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+..+..... .....+......+
T Consensus 149 --------~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p---- 216 (258)
T d1ae1a_ 149 --------ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP---- 216 (258)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST----
T ss_pred --------ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCC----
Confidence 1233568999999999988877543 689999999999987642211 1222222222111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++- ....-..|+.+.+.+|-
T Consensus 217 -----lgR~~~pediA~~v~fL~S---~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 217 -----MGRAGKPQEVSALIAFLCF---PAASYITGQIIWADGGF 252 (258)
T ss_dssp -----TCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred -----CCCCcCHHHHHHHHHHHhC---hhhCCCcCcEEEeCCCe
Confidence 1226779999999987763 11345789999998764
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.57 E-value=2.7e-15 Score=144.83 Aligned_cols=217 Identities=15% Similarity=0.080 Sum_probs=151.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHHHhc--
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
+.|+||||++-||+.++++|+++| ++|.+.|... ++.. ...+.+ ...++..+.+|+.|++++.++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 73 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARS-------AKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTA 73 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSC-------HHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCC-------HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 479999999999999999999999 5887744322 1100 000111 12467889999999988877664
Q ss_pred -----CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.|++||+|+... +..+++..+++|+.++.++.+++. +.+-.++|++||...+-
T Consensus 74 ~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~---------- 143 (244)
T d1edoa_ 74 IDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI---------- 143 (244)
T ss_dssp HHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------
T ss_pred HHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------
Confidence 4899999999762 345678999999999988877664 34556999999987652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDF 224 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~ 224 (586)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+-.+......+...+...+..+ ..-+
T Consensus 144 -----~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p---------l~R~ 209 (244)
T d1edoa_ 144 -----GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP---------LGRT 209 (244)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCT---------TCSC
T ss_pred -----CCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCC---------CCCC
Confidence 1233568999999999888777543 6899999999988644222223334444333322 1235
Q ss_pred cchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 225 TYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 225 i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...+|+|.++..+... ....-..|+++.+.+|-
T Consensus 210 ~~p~dvA~~v~fLa~S--~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 210 GQPENVAGLVEFLALS--PAASYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHC--SGGGGCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHHCC--chhcCCcCCeEEeCCCe
Confidence 5689999999865421 11235789999998864
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.7e-15 Score=142.43 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=151.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||++-||+.+++.|+++| ++|.+.|+.. +.. ...+. ..+..++.+|++|++++.++++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~--------~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE--------SGGRALEQE--LPGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH--------HHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHh--cCCCeEEEccCCCHHHHHHHHHH
Confidence 358999999999999999999999999 5999965543 210 01111 1367889999999988887764
Q ss_pred ------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+.|++||+||... +..+++..+++|+.++.++.+++... +-.++|++||.+...
T Consensus 73 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~--------- 143 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI--------- 143 (250)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------
T ss_pred HHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc---------
Confidence 4899999999641 12347888999999999888866532 125999999997752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~ 217 (586)
+.....+|+.+|...+.+.+.++. .+|+++.++.||.+-.+... .-.....+......
T Consensus 144 ------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~------- 210 (250)
T d1ydea1 144 ------GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ------- 210 (250)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS-------
T ss_pred ------cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcC-------
Confidence 123456899999999988877654 36899999999988533100 00111111111111
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+..-+...+|+|.++..++. +..-..|+++.+.+|..+
T Consensus 211 --pl~R~g~p~eva~~v~fL~S----da~~itG~~i~vDGG~~l 248 (250)
T d1ydea1 211 --PLGRMGQPAEVGAAAVFLAS----EANFCTGIELLVTGGAEL 248 (250)
T ss_dssp --TTSSCBCHHHHHHHHHHHHH----HCTTCCSCEEEESTTTTS
T ss_pred --CCCCCCCHHHHHHHHHHHhC----ccCCCcCCeEEECCCccc
Confidence 12235679999999987653 134678999999887543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=8.3e-15 Score=142.67 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=141.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||++-||+.++++|+++| ++|.+.|+.... +... ...+. -...++..+.+|+.|++++.++++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~-l~~~--~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYE-LNEC--LSKWQ--KKGFQVTGSVCDASLRPEREKLMQT 78 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHH--HTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHH--hcCCceEEEeccCCCHHHHHHHHHH
Confidence 3468999999999999999999999999 599985544210 0000 00000 013468899999999888766552
Q ss_pred ------C-CCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------G-ASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~-~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
| .|++||+||.. ....+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------- 150 (259)
T d1xq1a_ 79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-------- 150 (259)
T ss_dssp HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------
T ss_pred HHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc--------
Confidence 4 79999999976 1345678899999999988887664 34566999999987641
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHH-HHHHHhcCCCceEEEcCCCcc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVP-LLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~-~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+......|+.+|...+.+.+.++.+ +|+++.++-||.+-.+......+ ...+...+. .+.
T Consensus 151 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~---------~pl 214 (259)
T d1xq1a_ 151 -------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISR---------KPL 214 (259)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-------------------------------
T ss_pred -------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHhC---------CCC
Confidence 1234568999999999888766542 68999999999986553322211 111111111 112
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.-+...+|+|.+++.++. ....-..|+++.+.+|..
T Consensus 215 ~R~~~pedvA~~v~fL~S---~~s~~iTG~~i~vDGG~s 250 (259)
T d1xq1a_ 215 GRFGEPEEVSSLVAFLCM---PAASYITGQTICVDGGLT 250 (259)
T ss_dssp ---CCGGGGHHHHHHHTS---GGGTTCCSCEEECCCCEE
T ss_pred CCCcCHHHHHHHHHHHhC---chhcCCcCcEEEeCCCEE
Confidence 235668999999986653 113457899999988743
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.57 E-value=7.1e-15 Score=143.28 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=152.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+..+|+++||||++-||+.++++|.++| ++|.+.++..+..+. ...+.+ ...++..+.+|+.|++++.+++
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~------~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~ 76 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEAN------SVLEEIKKVGGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHH------HHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3578999999999999999999999999 588885543210000 000011 1246788999999998887776
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCC-EEEEecCccccccCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVR-RLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvk-r~I~~SS~~vyg~~~~~~ 143 (586)
+ +.|++||+||... +..+++..+++|+.++.++.+++ ++.+-. ++|++||.+...
T Consensus 77 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------ 150 (261)
T d1geea_ 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------ 150 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------
T ss_pred HHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------
Confidence 4 5899999999862 24457889999999998887765 344543 588999986541
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|...+.+.+.++. .+|+++.++-||.+-.+...... +...+...+..+
T Consensus 151 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p------- 214 (261)
T d1geea_ 151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------- 214 (261)
T ss_dssp ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT-------
T ss_pred ---------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCC-------
Confidence 123356899999999888776643 26899999999998654321111 112222222221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..-+...+|+|.+++.++. ....-..|+++.+.+|..
T Consensus 215 --l~R~~~pediA~~v~fL~S---~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 215 --MGYIGEPEEIAAVAAWLAS---SEASYVTGITLFADGGMT 251 (261)
T ss_dssp --TSSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGG
T ss_pred --CCCCCCHHHHHHHHHHHhC---chhcCCcCCeEEECCCee
Confidence 2235568999999987663 113457899999988753
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.2e-14 Score=139.30 Aligned_cols=212 Identities=12% Similarity=0.090 Sum_probs=149.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~~ 84 (586)
+.+|++|||||++-||+.++++|.++| ++|.+.|+. ++. +...+.+++.+|+++ .+.+.+.+.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r~--------~~~------l~~~~~~~~~~Dv~~~~~~~~~~~g~ 66 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARN--------EEL------LKRSGHRYVVCDLRKDLDLLFEKVKE 66 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESC--------HHH------HHHTCSEEEECCTTTCHHHHHHHSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECC--------HHH------HHhcCCcEEEcchHHHHHHHHHHhCC
Confidence 357999999999999999999999999 599995543 221 112345788899986 4556666678
Q ss_pred CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCCCcccC
Q 007866 85 ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDETLTCC 153 (586)
Q Consensus 85 ~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~ 153 (586)
+|++||+||... ...+++..+++|+.++.++.+++ ++.+-.++|++||..... +
T Consensus 67 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~---------------~ 131 (234)
T d1o5ia_ 67 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS---------------P 131 (234)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------C
T ss_pred CcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc---------------c
Confidence 999999999751 24457788999999988777765 344566899999986642 2
Q ss_pred CCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH-HHHHHHhcCCCceEEEcCCCccccccchhH
Q 007866 154 WKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV-PLLVNLAKPGWTKFIIGSGENMSDFTYVEN 229 (586)
Q Consensus 154 ~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~-~~l~~~~~~g~~~~i~g~g~~~~~~i~v~D 229 (586)
......|+.+|...+.+.+.++. .+|+++.++.||.+-.+...... ....+...+.. +..-+...+|
T Consensus 132 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~---------pl~R~~~ped 202 (234)
T d1o5ia_ 132 IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI---------PMRRMAKPEE 202 (234)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS---------TTSSCBCHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcC---------CCCCCcCHHH
Confidence 24456899999998887776643 26899999999988655321111 11222222222 2233667999
Q ss_pred HHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 230 va~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+|.+++.++. ....-..|+++.+.+|-
T Consensus 203 iA~~v~fL~S---~~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 203 IASVVAFLCS---EKASYLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHS---GGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHhC---hhhcCCcCcEEEECccc
Confidence 9999987653 11345789999998864
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.56 E-value=7.3e-15 Score=143.96 Aligned_cols=222 Identities=17% Similarity=0.154 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.++++|+++| ++|.+.|+.... +.. ...+.-....+.++.+|+.|++++.++++
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-~~~-----~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDH-GQK-----VCNNIGSPDVISFVHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH-----HHHHHCCTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHH-----HHHHhcCCCceEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599996654310 000 00011123467889999999998887764
Q ss_pred -----CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|++||+||... ...+++..+++|+.|+.++.+++.. .+-.++|++||.+.+..+
T Consensus 77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~------ 150 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------ 150 (268)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC------
T ss_pred HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccc------
Confidence 5899999999651 1234778899999999888876643 455689999998765211
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH----HHHHHHhcCCCceEEEcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV----PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~----~~l~~~~~~g~~~~i~g~g 218 (586)
......|+.+|...+.+.+.++. .+|+++.++.||.+-.+...... ............
T Consensus 151 --------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~------- 215 (268)
T d2bgka1 151 --------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN------- 215 (268)
T ss_dssp --------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS-------
T ss_pred --------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc-------
Confidence 11224799999999988877653 26899999999999876533211 111111111110
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
...-+...+|+|.+++.++. ....-..|+++.+.+|-
T Consensus 216 -~~gr~~~pedvA~~v~fL~S---~~s~~itGq~i~VDGG~ 252 (268)
T d2bgka1 216 -LKGTLLRAEDVADAVAYLAG---DESKYVSGLNLVIDGGY 252 (268)
T ss_dssp -SCSCCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred -cCCCCcCHHHHHHHHHHHhC---hhhCCccCceEEECcCc
Confidence 11125568999999987663 11345789999998874
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.56 E-value=1.2e-14 Score=141.57 Aligned_cols=220 Identities=16% Similarity=0.103 Sum_probs=150.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.+++.|.++| ++|.+.|+.... +... ...+.. ...++..+.+|++|++++.++++
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREA-LEKA--EASVRE--KGVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHT--TTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 368999999999999999999999999 599996654311 0000 000000 13468899999999988877664
Q ss_pred -----CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCC
Q 007866 84 -----GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 -----~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+.|++||+||... +..+++..+++|+.++.++.+++.. .+-.++|++||.+.+.
T Consensus 77 ~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~--------- 147 (260)
T d1zema1 77 VRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------- 147 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS---------
T ss_pred HHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc---------
Confidence 5899999999651 2345788999999999988887643 3556999999987652
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC---------------C-cHHHHHHHhc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT---------------Q-LVPLLVNLAK 207 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~---------------~-~~~~l~~~~~ 207 (586)
+.....+|+.+|...+.+.+.++.+ +|+++.++-||.+-.+... . ....+.+.+.
T Consensus 148 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T d1zema1 148 ------GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMI 221 (260)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHH
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHH
Confidence 1123468999999999888766532 6899999999998654210 0 1111222222
Q ss_pred CCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...| ..-+...+|+|.+++.++. .......|+++.+.+|
T Consensus 222 ~~~P---------l~R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG 260 (260)
T d1zema1 222 GSVP---------MRRYGDINEIPGVVAFLLG---DDSSFMTGVNLPIAGG 260 (260)
T ss_dssp HTST---------TSSCBCGGGSHHHHHHHHS---GGGTTCCSCEEEESCC
T ss_pred hcCC---------CCCCcCHHHHHHHHHHHhC---chhcCccCCeEEeCCC
Confidence 2111 2235568999999987663 1134577888888764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.56 E-value=1.3e-14 Score=141.40 Aligned_cols=221 Identities=12% Similarity=0.079 Sum_probs=150.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.++++|.++| ++|.+.|+.... +.... ..+.. ...++..+.+|+.|++++.++++
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~~--~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKE-LNDCL--TQWRS--KGFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHHH--HHHHH--TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHHH--HHHHh--cCCCceEEEeeCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599995553210 00000 00000 13467889999999888776552
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
..|++||+||... ...+++..+++|+.++.++.+++. +.+-.++|++||.....
T Consensus 80 ~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~--------- 150 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL--------- 150 (259)
T ss_dssp HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS---------
T ss_pred HHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc---------
Confidence 3799999999762 234578899999999988877654 44556999999987641
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC-----CcHHHHHHHhcCCCceEEEcCC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~-----~~~~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|...+.+.+.++.+ +|+++.++.||.+-.+... .-.....+...+..+
T Consensus 151 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T d2ae2a_ 151 ------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA------- 217 (259)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST-------
T ss_pred ------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCC-------
Confidence 1233568999999999888877543 6899999999988643210 001112222222221
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++. ....-..|+++.+.+|-
T Consensus 218 --l~R~g~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 218 --LRRMGEPKELAAMVAFLCF---PAASYVTGQIIYVDGGL 253 (259)
T ss_dssp --TCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHhC---chhCCCcCcEEEECCCe
Confidence 1225568999999986653 11345789999998764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.2e-14 Score=144.32 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=151.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC---CCCCCCeEEEEccCCCHHHHHHHh
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD---SLSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~---~l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+|+++||||++-||+.++++|+++| ++|.+.|+.... +... ..++.. .....++..+.+|+.|++++.+++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~-l~~~--~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLER-LKSA--ADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence 468999999999999999999999999 599996654311 0000 000000 012347889999999999888766
Q ss_pred c-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCC
Q 007866 83 E-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
+ +.|++||+|+.. ....+++..+++|+.++.++.+++.. .+-.++|++||....
T Consensus 86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~-------- 157 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-------- 157 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT--------
T ss_pred HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc--------
Confidence 4 589999999975 13446788999999999998887653 344578887765432
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
.......|+.+|...+.+.+..+.+ +|+++.++.||.+..+..........+...+... ...+.
T Consensus 158 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-----~~~pl 224 (297)
T d1yxma1 158 --------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSF-----QKIPA 224 (297)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGG-----GGSTT
T ss_pred --------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHH-----hcCCC
Confidence 1123468999999999888777533 6899999999999765321111111111111110 00111
Q ss_pred ccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 222 SDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.-+...+|+|.+++.++. ....-..|+++.|.+|.
T Consensus 225 gR~g~pedvA~~v~fL~S---d~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 225 KRIGVPEEVSSVVCFLLS---PAASFITGQSVDVDGGR 259 (297)
T ss_dssp SSCBCTHHHHHHHHHHHS---GGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhC---chhcCcCCcEEEeCcCh
Confidence 235568999999987763 11345789999998875
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-14 Score=140.46 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=153.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.+++.|+++| ++|.+.|+.. + .+.+.....++....+|+.+.+.++...+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r~~--------~--~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 72 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREG-AKVIATDINE--------S--KLQELEKYPGIQTRVLDVTKKKQIDQFANEV 72 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH--------H--HHGGGGGSTTEEEEECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCH--------H--HHHHHHhccCCceeeeecccccccccccccc
Confidence 468999999999999999999999999 5999965543 2 11122233568889999998877766553
Q ss_pred -CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCCCCCCcc
Q 007866 84 -GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHNGDETLT 151 (586)
Q Consensus 84 -~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~~~E~~p 151 (586)
+.|++||+||... +..+++..+++|+.++..+.+++.. .+-.++|++||...-- .
T Consensus 73 ~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~- 139 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV------------K- 139 (245)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT------------B-
T ss_pred ccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc------------C-
Confidence 6899999999872 3446788999999999999887654 3556899999864310 0
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCC------CcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 152 CCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDT------QLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 152 ~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~------~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.|... .......+.+.+.. +..
T Consensus 140 -~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---------pl~ 209 (245)
T d2ag5a1 140 -GVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ---------KTG 209 (245)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC---------TTS
T ss_pred -CccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcC---------CCC
Confidence 2345678999999999988877543 6899999999998654311 11111222222221 122
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
-+...+|+|.++..++. .......|+++.+.+|..
T Consensus 210 R~~~pedva~~v~fL~s---~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 210 RFATAEEIAMLCVYLAS---DESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp SCEEHHHHHHHHHHHHS---GGGTTCCSCEEEECTTGG
T ss_pred CCcCHHHHHHHHHHHhC---hhhCCCcCceEEeCCCcC
Confidence 35668999999987764 113457899999988753
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.55 E-value=5.5e-15 Score=143.42 Aligned_cols=218 Identities=15% Similarity=0.100 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||++-||+.++++|+++| ++|.+.|+.. ++. ...+.+ ..+...+.+|+.|.+++.++++
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~--------~~~~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINE--------AAGQQLAAEL-GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCH--------HHHHHHHHHH-CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCH--------HHHHHHHHHh-CCCeEEEEeecCCHHHHHHHHHH
Confidence 467999999999999999999999999 5999855432 210 001111 3467889999999988776664
Q ss_pred ------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCCCCC
Q 007866 84 ------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.|++||+||... +..+++..+++|+.++.++.+++... .-.++|++||.....
T Consensus 74 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~---------- 143 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL---------- 143 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------
T ss_pred HHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------
Confidence 4899999999761 23457899999999998887766442 226899999987641
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc---eEEEcCCC
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT---KFIIGSGE 219 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~---~~i~g~g~ 219 (586)
+.....+|+.+|...+.+.+.++.+ +++++.++-||.+-.+. +-....++.. ..-.....
T Consensus 144 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~-------~~~~~~~~~~~~~~~~~~~~~ 211 (253)
T d1hxha_ 144 -----PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM-------MQASLPKGVSKEMVLHDPKLN 211 (253)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH-------HHHHSCTTCCHHHHBCBTTTB
T ss_pred -----CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh-------HHhhCcchhhHHHHHhCcccc
Confidence 1234568999999999888766532 46999999999886431 0011111000 00000001
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
..-.+...+|+|.+++.++. ....-..|+++++.+|
T Consensus 212 ~~gr~~~pedvA~~v~fL~S---~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 212 RAGRAYMPERIAQLVLFLAS---DESSVMSGSELHADNS 247 (253)
T ss_dssp TTCCEECHHHHHHHHHHHHS---GGGTTCCSCEEEESSS
T ss_pred ccCCCCCHHHHHHHHHHHhC---hhhCCCcCcEEEECcc
Confidence 11235668999999987653 1134578999999776
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=2.6e-14 Score=142.12 Aligned_cols=252 Identities=14% Similarity=0.111 Sum_probs=164.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccc-cCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-LDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l- 82 (586)
..+|+++||||++-||+.++++|.++| ++|.+.|+..... ..|..... .....+ ........+|+.|.++.++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEI-RRRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHH-HHTTCEEEEECCCGGGHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHH-hhcccccccccchHHHHHHHHH
Confidence 458999999999999999999999999 5999977654210 01111100 000000 112345677888765544433
Q ss_pred ------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCC
Q 007866 83 ------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 83 ------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
.++|++||+||... ...+++..+++|+.|+.++.+++. +++-.++|++||.+.+.
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~-------- 154 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY-------- 154 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC--------
Confidence 35899999999761 344678999999999988887754 44556999999987652
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.+|...+.+.+.++. .+|+++.++-|+.+--+..... + ....
T Consensus 155 -------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~-~------------------~~~~ 208 (302)
T d1gz6a_ 155 -------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM-P------------------EDLV 208 (302)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS-C------------------HHHH
T ss_pred -------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC-c------------------HhhH
Confidence 123356899999999988877653 3689999999986532211100 0 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC-------------------CCcCHHHHHHHHHHHcCCCCCCccC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL-------------------EPIKFWDFLSIILEGLGYQRPFIKL 283 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~-------------------~~~t~~ei~~~i~~~~g~~~~~i~v 283 (586)
..+..+|+|.+++.++. +.....|+++.+.+| ++.|..++++.+.+....+.. ..
T Consensus 209 ~~~~PedvA~~v~fL~S----~~a~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~e~i~~~~~~i~d~~~~--~~ 282 (302)
T d1gz6a_ 209 EALKPEYVAPLVLWLCH----ESCEENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDFSNA--SK 282 (302)
T ss_dssp HHSCGGGTHHHHHHHTS----TTCCCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHHHHTCCTTC--BC
T ss_pred hcCCHHHHHHHHHHHcC----CCcCCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCHHHHHHHHHHHhCcccC--cC
Confidence 34557999999886542 233567888877654 246788888888877765432 33
Q ss_pred CHHHHHHHHHHHHHHH
Q 007866 284 PTGVVWYIILLVKWIH 299 (586)
Q Consensus 284 p~~~~~~~~~~~~~~~ 299 (586)
|.........+++.+.
T Consensus 283 p~~~~~~~~~~~~~~~ 298 (302)
T d1gz6a_ 283 PKSIQESTGGIIEVLH 298 (302)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555444445544443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=7.1e-15 Score=143.13 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=149.8
Q ss_pred CCCCCCCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQI 78 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l 78 (586)
|..-+..+|+++||||+| -||+.++++|+++| ++|.+.++... ... .... ......+...+.+|+.|++++
T Consensus 1 M~~~~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~--~~~--~~~~--~~~~~~~~~~~~~D~~~~~~v 73 (256)
T d1ulua_ 1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER--LRP--EAEK--LAEALGGALLFRADVTQDEEL 73 (256)
T ss_dssp CEEECCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGG--GHH--HHHH--HHHHTTCCEEEECCTTCHHHH
T ss_pred CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHH--HHH--HHHH--hhhccCcccccccccCCHHHH
Confidence 433356789999999998 69999999999999 48888554321 000 0000 001123567899999999888
Q ss_pred HHHhc-------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCC--CCEEEEecCcccccc
Q 007866 79 KKVLE-------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACRECK--VRRLVYNSTADVVFD 138 (586)
Q Consensus 79 ~~~l~-------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~g--vkr~I~~SS~~vyg~ 138 (586)
+++++ +.|++||+|+... ...++...+++|+.++..+.+++...- -.++|++||.....
T Consensus 74 ~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~- 152 (256)
T d1ulua_ 74 DALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK- 152 (256)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-
T ss_pred HHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-
Confidence 77764 4799999998741 122356688999999999988876541 24799999987642
Q ss_pred CCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceE
Q 007866 139 GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKF 213 (586)
Q Consensus 139 ~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~ 213 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+..+..... .....+...+..|
T Consensus 153 --------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~p-- 216 (256)
T d1ulua_ 153 --------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP-- 216 (256)
T ss_dssp --------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHST--
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCC--
Confidence 123456899999999998877654 2689999999999876543321 1223333322221
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..-+...+|+|.+++.++. ....-..|+++.+.+|..
T Consensus 217 -------l~R~~~pedvA~~v~fL~S---~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 217 -------LRRNITQEEVGNLGLFLLS---PLASGITGEVVYVDAGYH 253 (256)
T ss_dssp -------TSSCCCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGG
T ss_pred -------CCCCcCHHHHHHHHHHHhC---chhCCccCCeEEECcCEe
Confidence 1225568999999987663 112457899999988754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.54 E-value=1.2e-14 Score=141.20 Aligned_cols=218 Identities=17% Similarity=0.126 Sum_probs=147.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-----
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE----- 83 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~----- 83 (586)
|.++||||++-||+.++++|.++| ++|.+.|+.... +... ...+.+ ...++..+.+|++|++++.++++
T Consensus 2 KValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~i~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDAT-AKAV--ASEINQ--AGGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 446999999999999999999999 599995553210 0000 000000 13468889999999988877664
Q ss_pred --CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHh----CC-CCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 --GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRE----CK-VRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 --~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~----~g-vkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+||... +..+++..+++|+.|+.++.+++.. .+ -.++|++||.+.+.
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------ 143 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------ 143 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------
Confidence 4899999999761 3445788999999999998876532 33 35799999987641
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH-----------HHHHHhcCCCceEEE
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP-----------LLVNLAKPGWTKFII 215 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~-----------~l~~~~~~g~~~~i~ 215 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+....... .......+.
T Consensus 144 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 214 (255)
T d1gega_ 144 ---GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKR------ 214 (255)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTT------
T ss_pred ---cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhc------
Confidence 223456899999999988877653 368999999999885432111111 111111111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+..-+...+|+|.+++.++. .......|+.+.+.+|-
T Consensus 215 ---~pl~R~~~peevA~~v~fL~S---~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 215 ---ITLGRLSEPEDVAACVSYLAS---PDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp ---CTTCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESSSS
T ss_pred ---CCCCCCcCHHHHHHHHHHHhC---chhCCccCcEEEecCCE
Confidence 122235679999999987663 11345789999998875
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.53 E-value=6.1e-14 Score=136.61 Aligned_cols=196 Identities=21% Similarity=0.140 Sum_probs=139.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CC---CCC--CCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LP---DSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~---~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+..+++||||+|.||..++++|.++|..+|.+ ..|+..+.. .. ..+ ...++.++.+|+.|.+++.+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl--------~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~ 79 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLL--------VSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRE 79 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEE--------EESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEE--------EeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHH
Confidence 45799999999999999999999999535666 344321110 00 001 23468899999999999988
Q ss_pred HhcC------CCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 81 VLEG------ASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 81 ~l~~------~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+++. .|.|||+++... ...+.+..+++|+.|+.++.+++...+..++|++||.....
T Consensus 80 ~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~---------- 149 (259)
T d2fr1a1 80 LLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF---------- 149 (259)
T ss_dssp HHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------
T ss_pred hhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------
Confidence 8753 689999999872 23345777899999999999998888888999999998752
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCCCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccccccch
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v 227 (586)
+......|+.+|...|.+.+.+.. .|++++++.||.+.+++-.. ....+.... .-...+..
T Consensus 150 -----g~~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~--~~~~~~~~~-----------~G~~~~~~ 210 (259)
T d2fr1a1 150 -----GAPGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE--GPVADRFRR-----------HGVIEMPP 210 (259)
T ss_dssp -----CCTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC--------------CTT-----------TTEECBCH
T ss_pred -----CCcccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCcccc--chHHHHHHh-----------cCCCCCCH
Confidence 123356799999999999888766 69999999999887654211 011111111 11234678
Q ss_pred hHHHHHHHHHHH
Q 007866 228 ENVAHAHVCAAE 239 (586)
Q Consensus 228 ~Dva~ai~~ale 239 (586)
+++++++..++.
T Consensus 211 ~~~~~~l~~~l~ 222 (259)
T d2fr1a1 211 ETACRALQNALD 222 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998887
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.51 E-value=4.4e-14 Score=137.05 Aligned_cols=215 Identities=13% Similarity=0.037 Sum_probs=147.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC----CCCCCCCCCCeEEEEccCC-CHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS----LLPDSLSSGRAEYHQVDVR-DISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~----~~~~~l~~~~~~~~~~Dl~-d~~~l~~ 80 (586)
..+|+|+||||++-||..++++|+++|. +|.+++ |..++. .+.......++.++.+|+. +.+++.+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~--------r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 73 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVIL--------DRVENPTALAELKAINPKVNITFHTYDVTVPVAESKK 73 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEE--------ESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEE--------CCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHH
Confidence 3579999999999999999999999994 766632 222210 0111123457889999997 6555555
Q ss_pred Hh-------cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhC-------CCCEEEEecCccccccCCCCCCCC
Q 007866 81 VL-------EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-------KVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 81 ~l-------~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~-------gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
++ .++|++||+||.. ...+++..+++|+.|+.++..++... +-.++|++||...+.
T Consensus 74 ~~~~~~~~~g~iDilvnnAG~~-~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~--------- 143 (254)
T d1sbya1 74 LLKKIFDQLKTVDILINGAGIL-DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN--------- 143 (254)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC-CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------
T ss_pred HHHHHHHHcCCCCEEEeCCCCC-CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc---------
Confidence 44 3589999999976 56779999999999999988876542 235799999987752
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceE-EEcCCCccc
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKF-IIGSGENMS 222 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~-i~g~g~~~~ 222 (586)
+......|+.||+....+.+.++.+ +|+++.++-||.+..+. .+......... ........+
T Consensus 144 ------~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~--------~~~~~~~~~~~~~~~~~~~~~ 209 (254)
T d1sbya1 144 ------AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL--------VHTFNSWLDVEPRVAELLLSH 209 (254)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH--------HHSCCCGGGSCTTHHHHHTTS
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcc--------ccccccchhHHHHHHhccccC
Confidence 2234568999999998888777643 58999999999997541 11111100000 000000112
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.....+++|++++.+++ ....|+++.+.+|.
T Consensus 210 ~~~~~e~va~~~~~~~~------~~~tG~vi~vdgG~ 240 (254)
T d1sbya1 210 PTQTSEQCGQNFVKAIE------ANKNGAIWKLDLGT 240 (254)
T ss_dssp CCEEHHHHHHHHHHHHH------HCCTTCEEEEETTE
T ss_pred CCCCHHHHHHHHHHhhh------CCCCCCEEEECCCE
Confidence 34468999999998887 24588999998874
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.51 E-value=8.6e-14 Score=134.79 Aligned_cols=212 Identities=14% Similarity=0.030 Sum_probs=135.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+||||||++-||.+++++|+++|+ ++|.+ ..|+.++..........++.++.+|+.|.++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~--------~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i 73 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIA--------TARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKV 73 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEE--------EESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEE--------EeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHH
Confidence 458999999999999999999999995 36777 3444332111111234578999999999988776542
Q ss_pred -------CCCEEEEcccCCCC--------CCChhHHHHHHHHHHHHHHHHHHh----C-----------CCCEEEEecCc
Q 007866 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQGAKNVVTACRE----C-----------KVRRLVYNSTA 133 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~gt~~lleaa~~----~-----------gvkr~I~~SS~ 133 (586)
+.|++||+||.... ..+.+..+++|+.|+.++.+++.. . ...+++.+||.
T Consensus 74 ~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~ 153 (250)
T d1yo6a1 74 GEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSG 153 (250)
T ss_dssp HHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCG
T ss_pred HHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccc
Confidence 38999999997511 123667999999999988776532 1 12367777776
Q ss_pred cccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCC
Q 007866 134 DVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGW 210 (586)
Q Consensus 134 ~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~ 210 (586)
..+.... ... ....+...|+.||+....+.+.++. ..|+++.++-||.+--+- . ++
T Consensus 154 ~~~~~~~-----~~~---~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m----~---------~~ 212 (250)
T d1yo6a1 154 LGSITDN-----TSG---SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL----G---------GK 212 (250)
T ss_dssp GGCSTTC-----CST---TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------
T ss_pred cccccCC-----ccc---ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCC----C---------CC
Confidence 5542111 011 1234556799999998888777653 368999999999874221 0 00
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
...+..++.+..++..++.+ .+...|+.| -.+++|+.
T Consensus 213 -----------~~~~~~e~~a~~~~~~~~~~---~~~~sG~f~-~~~g~p~~ 249 (250)
T d1yo6a1 213 -----------NAALTVEQSTAELISSFNKL---DNSHNGRFF-MRNLKPYE 249 (250)
T ss_dssp -----------------HHHHHHHHHHHTTC---CGGGTTCEE-ETTEEECC
T ss_pred -----------CCCCCHHHHHHHHHHHHhcC---CCCCCeEEE-CCCCeeCC
Confidence 01234688888888777633 344566644 44555554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.49 E-value=2.9e-14 Score=140.02 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=148.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
.+|+++||||++-||+.++++|+++| ++|.+.|+.... +... ...+... ....++..+.+|+.|++++.++++
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDR-LEET--KQQILKAGVPAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence 57999999999999999999999999 599996654310 0000 0000000 112367899999999988877664
Q ss_pred -----CCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHHh----CCCCEEEEecCccccccCCCCCCC
Q 007866 84 -----GASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE----CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -----~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~~----~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+.|++||+||... +..+++..+++|+.++.++.+++.. .+-.+++++||.+...
T Consensus 79 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~-------- 150 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ-------- 150 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS--------
T ss_pred HHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc--------
Confidence 4899999999641 1124678899999999888876643 4455788877765431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC----C-----cHHHHHHHhcCCCceE
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT----Q-----LVPLLVNLAKPGWTKF 213 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~----~-----~~~~l~~~~~~g~~~~ 213 (586)
+......|+.+|...+.+.+..+. .+|+++.++.||.+-.+... . -...+.....+..|
T Consensus 151 -------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iP-- 221 (274)
T d1xhla_ 151 -------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP-- 221 (274)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT--
T ss_pred -------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCC--
Confidence 112346799999999888876543 26899999999998654211 0 01112222222211
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++..- ...-..|+++.+.+|.
T Consensus 222 -------lgR~g~pediA~~v~fL~S~d--~s~~itG~~i~vDGG~ 258 (274)
T d1xhla_ 222 -------VGHCGKPEEIANIIVFLADRN--LSSYIIGQSIVADGGS 258 (274)
T ss_dssp -------TSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTG
T ss_pred -------CCCCcCHHHHHHHHHHHcCCc--cccCccCcEEEeCcCH
Confidence 223556999999998665200 0234789999999875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.8e-14 Score=137.77 Aligned_cols=204 Identities=12% Similarity=0.013 Sum_probs=137.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|++|||||++-||.++++.|.++| ++|++.++.... +... ...+...-...++..+.+|+.|++++.++++
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~-l~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGN-IEEL--AAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence 347899999999999999999999999 599985543210 0000 0001111123467889999999988877653
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHH----HhCC--CCEEEEecCccccccCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECK--VRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa----~~~g--vkr~I~~SS~~vyg~~~~~~~~ 145 (586)
+.|++||+|+.. ....+++..+++|+.+..++.+++ ++.+ -.++|++||.+.+...
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------ 157 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------ 157 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------
Confidence 589999999986 234567889999999988876665 3444 3589999998764110
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhc-----CCCCceEEEEeCCCcccCCCC----CcHHHHHHHhcCCCceEEEc
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFAN-----NIDGLLTCALRPSNVFGPGDT----QLVPLLVNLAKPGWTKFIIG 216 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~-----~~~gl~~~ilRp~~v~G~~~~----~~~~~l~~~~~~g~~~~i~g 216 (586)
+......|+.+|...+.+.+.++ ..+|+++.++-||.+=.+... ..........
T Consensus 158 -------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~---------- 220 (257)
T d1xg5a_ 158 -------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY---------- 220 (257)
T ss_dssp -------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH----------
T ss_pred -------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC----------
Confidence 12334579999999999987665 347899999999877433110 1111111111
Q ss_pred CCCccccccchhHHHHHHHHHHH
Q 007866 217 SGENMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale 239 (586)
+...+...+|+|++++.++.
T Consensus 221 ---~~~r~~~pedvA~~v~fL~s 240 (257)
T d1xg5a_ 221 ---EQMKCLKPEDVAEAVIYVLS 240 (257)
T ss_dssp ---C---CBCHHHHHHHHHHHHH
T ss_pred ---CCCCCcCHHHHHHHHHHHhC
Confidence 12335679999999998776
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.48 E-value=9.5e-14 Score=136.41 Aligned_cols=216 Identities=17% Similarity=0.106 Sum_probs=145.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc---
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--- 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--- 83 (586)
.+|+++||||++-||+.++++|.++| ++|.+.|+..+. +. ..... ...++..+.+|+.|.+++.++++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~-l~------~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~ 74 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSAER-LA------ELETD-HGDNVLGIVGDVRSLEDQKQAASRCV 74 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HH------HHHHH-HGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HH------HHHHH-cCCCeeEEecccccHHHHHHHHHHHH
Confidence 57999999999999999999999999 599996554210 00 00000 12468899999999988877653
Q ss_pred ----CCCEEEEcccCCCC--------CC----ChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCC
Q 007866 84 ----GASTVFYVDATDLN--------TD----DFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 ----~~D~Vih~aa~~~~--------~~----~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~ 143 (586)
++|++||+||.... .. +++..+++|+.++.++.+++. +.+ .++|++||...+-
T Consensus 75 ~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~------ 147 (276)
T d1bdba_ 75 ARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFY------ 147 (276)
T ss_dssp HHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTS------
T ss_pred HHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhcc------
Confidence 58999999996411 11 267889999999888877663 334 5889988876531
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC--CCceEEEEeCCCcccCCCCCc----------HHHHHHHhcCCCc
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI--DGLLTCALRPSNVFGPGDTQL----------VPLLVNLAKPGWT 211 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~--~gl~~~ilRp~~v~G~~~~~~----------~~~l~~~~~~g~~ 211 (586)
+......|+.+|+..+.+.+.++.+ .++++.++.||.+-.+..... ...+.+...+..|
T Consensus 148 ---------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 218 (276)
T d1bdba_ 148 ---------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLP 218 (276)
T ss_dssp ---------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCT
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCC
Confidence 1123467999999988887766432 249999999999865422111 1112233333222
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHH-HHhhcccccCCCcEEEEeCCC
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAA-EALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~al-e~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++ +. ...-..|+.+++.+|-
T Consensus 219 ---------lgR~g~peeva~~v~fL~S~~---~a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 219 ---------IGRMPEVEEYTGAYVFFATRG---DAAPATGALLNYDGGL 255 (276)
T ss_dssp ---------TSSCCCGGGGSHHHHHHHCHH---HHTTCSSCEEEESSSG
T ss_pred ---------CCCCcCHHHHHHHHHHHcCCc---ccCCeeCcEEEECcCh
Confidence 122455899999887654 21 0245789999998874
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.48 E-value=1.3e-13 Score=134.30 Aligned_cols=221 Identities=13% Similarity=0.110 Sum_probs=148.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+..+|++|||||+|-||.++++.|+++| ++|.+.+......+. ...+.+ ...++..+.+|+.|++++.+.+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~------~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~ 75 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAE------EVVAELKKLGAQGVAIQADISKPSEVVALF 75 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHH------HHHHHHHHTTCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHH------HHHHHHHHcCCCceEecCCCCCHHHHHHHH
Confidence 4678999999999999999999999999 488763322110000 000011 2346889999999998887766
Q ss_pred c-------CCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccc-cccCCCCCCC
Q 007866 83 E-------GASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADV-VFDGSHDIHN 145 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~v-yg~~~~~~~~ 145 (586)
+ +.|++||+||... ...+++..+++|+.+..++.+++..+ .-.+.+.++|... ..
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~-------- 147 (259)
T d1ja9a_ 76 DKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT-------- 147 (259)
T ss_dssp HHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC--------
T ss_pred HHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc--------
Confidence 4 4799999999862 23457889999999999999888664 1235666655432 21
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC-------------CCCcHHHHHHHhcCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG-------------DTQLVPLLVNLAKPG 209 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~-------------~~~~~~~l~~~~~~g 209 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+. .......+.+.+.+.
T Consensus 148 -------~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T d1ja9a_ 148 -------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM 220 (259)
T ss_dssp -------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhC
Confidence 112345799999998888877654 268999999999985321 001112233333332
Q ss_pred CceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 210 WTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 210 ~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+ ..-+...+|+|++++.++.. ......|+.+.+.+|.
T Consensus 221 ~p---------l~R~g~p~eVa~~v~fL~S~---~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 221 NP---------LKRIGYPADIGRAVSALCQE---ESEWINGQVIKLTGGG 258 (259)
T ss_dssp ST---------TSSCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTC
T ss_pred CC---------CCCCcCHHHHHHHHHHHhCc---hhcCCcCceEEeCCCC
Confidence 22 23466799999999977641 1244789999998764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.1e-13 Score=133.31 Aligned_cols=194 Identities=12% Similarity=0.029 Sum_probs=137.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|.++||||++-||++++++|.++| ++|.+.|+.... +... ..... -...++..+.+|++|++++.++++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~-l~~~--~~~~~--~~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHG-LEET--AAKCK--GLGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHH--hcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 468999999999999999999999999 599995554310 0000 00000 123468899999999988887664
Q ss_pred -----CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCC
Q 007866 84 -----GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 84 -----~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
++|++||+||.... ...++..+++|+.|+.++.+++ ++.+-.++|++||...+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~---------- 148 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV---------- 148 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC----------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC----------
Confidence 48999999998721 2246788999999998887755 455667999999997652
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC------CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI------DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENM 221 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~------~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~ 221 (586)
+......|+.||+..+.+.+.++.+ .|+.+.++.||.+--+...... ...
T Consensus 149 -----~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~-------------------~~~ 204 (244)
T d1yb1a_ 149 -----SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS-------------------TSL 204 (244)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-------------------HHH
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-------------------ccc
Confidence 1122467999999988888877532 5899999999987443211100 111
Q ss_pred ccccchhHHHHHHHHHHH
Q 007866 222 SDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 222 ~~~i~v~Dva~ai~~ale 239 (586)
...+..+|+|+.++.+++
T Consensus 205 ~~~~~pe~va~~i~~~~~ 222 (244)
T d1yb1a_ 205 GPTLEPEEVVNRLMHGIL 222 (244)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 234568999999998877
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.47 E-value=4.3e-14 Score=138.07 Aligned_cols=225 Identities=9% Similarity=0.056 Sum_probs=143.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|.++||||++-||+.++++|+++| ++|.+.|+.... +... ...+... ....++..+.+|+.|.+++.++++
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~-l~~~--~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAER-LEET--RQQILAAGVSEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhcCCCcCceEEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999999999 599995554210 0000 0000000 122468899999999988877664
Q ss_pred ------CCCEEEEcccCCC-----------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccc-cccCCCC
Q 007866 84 ------GASTVFYVDATDL-----------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADV-VFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~-----------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~v-yg~~~~~ 142 (586)
+.|++||+||... +..+++..+++|+.++.++.+++... +-.++|.++|... +.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~----- 153 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH----- 153 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS-----
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc-----
Confidence 5899999999641 12346788999999998888776542 2235666665432 21
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---------HHHHHHHhcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---------VPLLVNLAKPGW 210 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~---------~~~l~~~~~~g~ 210 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .........+..
T Consensus 154 ----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T d1spxa_ 154 ----------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV 223 (264)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC
T ss_pred ----------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC
Confidence 112345799999999888876653 3689999999999865432110 011111111111
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..-+...+|+|.+++.++... ...-..|+++.+.+|..
T Consensus 224 ---------Pl~R~g~pedvA~~v~fL~S~~--~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 224 ---------PAGVMGQPQDIAEVIAFLADRK--TSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTGG
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCCc--ccCCccCceEEeCCChh
Confidence 1122456899999998766210 02347899999988753
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.47 E-value=1.2e-13 Score=135.45 Aligned_cols=226 Identities=11% Similarity=0.051 Sum_probs=146.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC-CCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD-SLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~-~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
..+|+++||||++-||+.++++|.++| ++|.+.|+.... +... ...+.+ .....++..+.+|+.|++++.++++
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~-l~~~--~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 78 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSER-LEET--RQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 78 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHHH--HHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHH--HHHHHhcCCCCCceEEEEccCCCHHHHHHHHHH
Confidence 357999999999999999999999999 599996554310 0000 000000 0122468899999999988877664
Q ss_pred ------CCCEEEEcccCCCC--------CC---ChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCc-cccccCCCC
Q 007866 84 ------GASTVFYVDATDLN--------TD---DFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTA-DVVFDGSHD 142 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~--------~~---~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~-~vyg~~~~~ 142 (586)
+.|++||+||.... +. +++..+++|+.++.++.+++... +-.++|.++|. +...
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~----- 153 (272)
T d1xkqa_ 79 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ----- 153 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS-----
T ss_pred HHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhcccc-----
Confidence 58999999997621 11 26778899999998888876542 22356666554 3220
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCC------CcH---HHHHHHhcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDT------QLV---PLLVNLAKPGW 210 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~------~~~---~~l~~~~~~g~ 210 (586)
+......|+.+|...+.+.+.++. .+|+++.++-||.+-.+... ... ........+..
T Consensus 154 ----------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (272)
T d1xkqa_ 154 ----------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI 223 (272)
T ss_dssp ----------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC
T ss_pred ----------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCC
Confidence 122346799999999888777653 37899999999988644211 001 11111121211
Q ss_pred ceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 211 TKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 211 ~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
+..-+...+|+|.+++.++..- ...-..|+++.+.+|..+
T Consensus 224 ---------PlgR~g~pediA~~v~fL~S~~--as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 224 ---------PIGAAGKPEHIANIILFLADRN--LSFYILGQSIVADGGTSL 263 (272)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHCHH--HHTTCCSCEEEESTTGGG
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCcc--hhCCccCeEEEeCcCHHH
Confidence 1223566899999998765200 012378999999887543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.46 E-value=2.2e-13 Score=130.82 Aligned_cols=189 Identities=12% Similarity=0.166 Sum_probs=134.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCc------EEEEecCCcccccCCCCCCC-CCCCCC--CCCCeEEEEccCCCHHHHHH
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKC------IVRVTDSTQSLQLDPSESNS-LLPDSL--SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~------~V~~~d~~~~~~l~r~~~~~-~~~~~l--~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.||||||++-||+.++++|.++|.. .|.+.++.. ++. .....+ ...++..+.+|++|.+++.+
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~--------~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~ 74 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA--------ADLEKISLECRAEGALTDTITADISDMADVRR 74 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH--------HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH--------HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 4899999999999999999999952 267744332 210 000011 12457889999999998877
Q ss_pred Hhc-------CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCC
Q 007866 81 VLE-------GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHD 142 (586)
Q Consensus 81 ~l~-------~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~ 142 (586)
+++ +.|++||+||.. ....+++..+++|+.|+.++.+++. +.+-.++|++||.+.+.
T Consensus 75 ~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----- 149 (240)
T d2bd0a1 75 LTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----- 149 (240)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----
T ss_pred HHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC-----
Confidence 664 489999999986 1345678899999999988877664 34556999999987652
Q ss_pred CCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 143 IHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 143 ~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.....+|+.||...+.+.+.++. .+|+++.++.||.+-.+..... +..
T Consensus 150 ----------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~~~ 201 (240)
T d2bd0a1 150 ----------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------DDE 201 (240)
T ss_dssp ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------CST
T ss_pred ----------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------CHh
Confidence 123356899999988888776532 3789999999999865432111 011
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
....+...+|+|++++.++.
T Consensus 202 ~~~~~~~PedvA~~v~~l~s 221 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYL 221 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHT
T ss_pred hHhcCCCHHHHHHHHHHHHc
Confidence 12234568999999998776
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.45 E-value=3.5e-13 Score=130.23 Aligned_cols=166 Identities=13% Similarity=0.069 Sum_probs=116.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCCCC-CCCC-CCCCCeEEEEccCCCHHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSL-LPDS-LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~---~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~-l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.||+||||||++-||+.++++|++ +| ++|++. .|++++.. ..+. -...++.++.+|+.|+++++++
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 71 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTT--------CRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKL 71 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEE--------ESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEE--------ECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHH
Confidence 378999999999999999999974 67 588884 44433210 0000 1235789999999998776654
Q ss_pred hc---------CCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHHHh---------------CCCCEEEE
Q 007866 82 LE---------GASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTACRE---------------CKVRRLVY 129 (586)
Q Consensus 82 l~---------~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa~~---------------~gvkr~I~ 129 (586)
++ +.|++||+||... ...+.+..+++|+.|+..+.+++.. .+-.++|.
T Consensus 72 ~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~ 151 (248)
T d1snya_ 72 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN 151 (248)
T ss_dssp HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred HhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 32 4899999999751 1223567899999999888776532 13468999
Q ss_pred ecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccC
Q 007866 130 NSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGP 193 (586)
Q Consensus 130 ~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~ 193 (586)
+||..-.-.+ . +......|+.||+....+.+.++. ..|+++.++.||.+--+
T Consensus 152 i~S~~g~~~~----------~--~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 152 MSSILGSIQG----------N--TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp ECCGGGCSTT----------C--CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccccccccCC----------C--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 9997532100 0 122345899999998888776542 36899999999988543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.44 E-value=3.9e-14 Score=137.36 Aligned_cols=211 Identities=17% Similarity=0.160 Sum_probs=141.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh-------
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL------- 82 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l------- 82 (586)
+++||||++.||+.++++|.++| ++|.+.|+. .+.. +.+......+..+|+.|.+++.+++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~--------~~~~---~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDES--------FKQK---DELEAFAETYPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGG--------GGSH---HHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECC--------HHHH---HHHHhhhCcEEEeccCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999 599995443 2210 0000111223456776654444333
Q ss_pred cCCCEEEEcccCCC--------CCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCCCCCc
Q 007866 83 EGASTVFYVDATDL--------NTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNGDETL 150 (586)
Q Consensus 83 ~~~D~Vih~aa~~~--------~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~~E~~ 150 (586)
.+.|++||+||... ...+++..+++|+.++.++.+++ ++.+-.++|++||.+.+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~------------- 136 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG------------- 136 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS-------------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc-------------
Confidence 36899999998641 12346788899999988887765 344556999999987652
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--------HHHHHHHhcCCCceEEEcCCC
Q 007866 151 TCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--------VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 151 p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--------~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .+...+...+..+
T Consensus 137 --~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p-------- 206 (252)
T d1zmta1 137 --PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA-------- 206 (252)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS--------
T ss_pred --ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC--------
Confidence 112346899999999988877653 2689999999999976543322 1222333322221
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.+++.++. ....-..|+++.+.+|-
T Consensus 207 -l~R~g~pedvA~~v~fL~S---~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 207 -LQRLGTQKELGELVAFLAS---GSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp -SSSCBCHHHHHHHHHHHHT---TSCGGGTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHhC---chhcCCcCCeEEECCCc
Confidence 1125569999999987664 11345789999998875
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-13 Score=130.49 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=141.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCCCCCCCeEEEEccCCCHHHHHHHh--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDSLSSGRAEYHQVDVRDISQIKKVL-- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l~~~~~~~~~~Dl~d~~~l~~~l-- 82 (586)
..+|.++||||++-||+.++++|.++| ++|.+.|+. .++.. ..+.+ ..+.....+|+.+.+.+++..
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~--------~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~ 72 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLP--------NSGGEAQAKKL-GNNCVFAPADVTSEKDVQTALAL 72 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECT--------TSSHHHHHHHH-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCC--------hHHHHHHHHHh-CCCcccccccccccccccccccc
Confidence 468999999999999999999999999 599995543 22110 00111 246788889999876655443
Q ss_pred -----cCCCEEEEcccCCC-------------CCCChhHHHHHHHHHHHHHHHHHHhC----------CCCEEEEecCcc
Q 007866 83 -----EGASTVFYVDATDL-------------NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTAD 134 (586)
Q Consensus 83 -----~~~D~Vih~aa~~~-------------~~~~~~~~~~~Nv~gt~~lleaa~~~----------gvkr~I~~SS~~ 134 (586)
...|.+++.++... ...+++..+++|+.++.++..++..+ +-.++|++||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~ 152 (248)
T d2o23a1 73 AKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVA 152 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTH
T ss_pred cccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchh
Confidence 24788888876541 11246788999999999999887542 233799999997
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCc
Q 007866 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWT 211 (586)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~ 211 (586)
.+. +......|+.+|+..+.+.+.++.+ +|+++.++.||.+-.+..........+...+..+
T Consensus 153 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p 217 (248)
T d2o23a1 153 AFE---------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVP 217 (248)
T ss_dssp HHH---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHTCS
T ss_pred hcc---------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHHHHHHHhcCC
Confidence 752 2234568999999999998877543 6899999999998755432222221211111111
Q ss_pred eEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 212 KFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 212 ~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
.. .-+...+|+|.+++.+++ .+-..|++.+|
T Consensus 218 --l~------~R~g~peevA~~v~fL~s-----~~~itGq~I~v 248 (248)
T d2o23a1 218 --FP------SRLGDPAEYAHLVQAIIE-----NPFLNGEVIRL 248 (248)
T ss_dssp --SS------CSCBCHHHHHHHHHHHHH-----CTTCCSCEEEE
T ss_pred --CC------CCCcCHHHHHHHHHHHHh-----CCCCCceEeEC
Confidence 00 114568999999987766 35567776654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.43 E-value=4.3e-13 Score=133.02 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=145.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE- 83 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~- 83 (586)
...+|+++||||+|.||++++++|.++| ++|.+.|+.... +.. ....+.. ....++..+.+|+.|.+++.++++
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~-l~~--~~~~l~~-~~g~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDV-LKA--TAEQISS-QTGNKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHH-HHH--HHHHHHH-HHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHH-HHH--HHHHHHH-hcCCceEEEEecccChHHHHHHhhh
Confidence 3456999999999999999999999999 599996554310 000 0000000 013467889999999988776553
Q ss_pred ------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHH----h-CCCCEEEEecCccccccCCCCCCC
Q 007866 84 ------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACR----E-CKVRRLVYNSTADVVFDGSHDIHN 145 (586)
Q Consensus 84 ------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~----~-~gvkr~I~~SS~~vyg~~~~~~~~ 145 (586)
++|++||+|+.... ..+....+.+|..+...+...+. . .+-..++.+||.....
T Consensus 97 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------- 168 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------- 168 (294)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------
T ss_pred hhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh--------
Confidence 58999999997621 23466777888888777655432 2 2344667777665431
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc---HHHHHHHhcCCCceEEEcCCC
Q 007866 146 GDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL---VPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 146 ~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~---~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+.....+|+.+|...+.+.+.++. .+|+++.++.||.+-.+..... .....+...+..+
T Consensus 169 -------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p-------- 233 (294)
T d1w6ua_ 169 -------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP-------- 233 (294)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT--------
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC--------
Confidence 112345799999999999887753 3689999999999976542211 1122232222221
Q ss_pred ccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 220 NMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
..-+...+|+|.++..++. ....-..|+++.+.+|.
T Consensus 234 -l~R~~~pediA~~v~fL~s---d~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 234 -CGRLGTVEELANLAAFLCS---DYASWINGAVIKFDGGE 269 (294)
T ss_dssp -TSSCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTH
T ss_pred -CCCCCCHHHHHHHHHHHhC---chhcCCCCcEEEECCCh
Confidence 1235568999999987664 11245789999999875
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.43 E-value=6.7e-13 Score=130.02 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=149.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-- 83 (586)
..+|+++||||++-||+.++++|+++| ++|.+.|+.....+....+ .+. -...++..+.+|+.|++++.+.++
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~--~~~--~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVA--AIK--KNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHH--HHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHH--HHH--hhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999999 5888865543110000000 000 023468889999999988877664
Q ss_pred -----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCCC
Q 007866 84 -----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDET 149 (586)
Q Consensus 84 -----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E~ 149 (586)
+.|++||+++.. ....++...+++|+.++.++.+++... .-.+.++++|......
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~----------- 159 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK----------- 159 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-----------
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc-----------
Confidence 579999999976 224457888999999999999988753 2247788877643210
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCC-----------CCc-HHHHHH-HhcCCCceE
Q 007866 150 LTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGD-----------TQL-VPLLVN-LAKPGWTKF 213 (586)
Q Consensus 150 ~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~-----------~~~-~~~l~~-~~~~g~~~~ 213 (586)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+-.+.. ... -....+ ...+.
T Consensus 160 ---~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 232 (272)
T d1g0oa_ 160 ---AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW---- 232 (272)
T ss_dssp ---SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHS----
T ss_pred ---cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHcc----
Confidence 223456799999999888876644 2689999999999854310 000 000101 01111
Q ss_pred EEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 214 IIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 214 i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
.+..-+...+|+|.++..++. +......|+++.+.+|.
T Consensus 233 -----~PlgR~~~peevA~~v~fL~s---~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 233 -----SPLRRVGLPIDIARVVCFLAS---NDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTC
T ss_pred -----CCCCCCcCHHHHHHHHHHHhC---chhcCccCceEeECCCC
Confidence 111235678999999997764 11344789999998875
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=3.5e-12 Score=122.06 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=135.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH-------
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK------- 79 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~------- 79 (586)
.+|+|+||||+|-||+.++++|.++| ++|.++|+... +. ......+.+|..+.++.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVEN------EE---------ASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCC------TT---------SSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcc------cc---------ccccceeecccCcHHHHHHHHHHHH
Confidence 37999999999999999999999999 59998665431 00 012234445555444333
Q ss_pred HHhc--CCCEEEEcccCC---C-C----CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCC
Q 007866 80 KVLE--GASTVFYVDATD---L-N----TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGD 147 (586)
Q Consensus 80 ~~l~--~~D~Vih~aa~~---~-~----~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~ 147 (586)
+.+. ++|++||+||.. . . ..+++..+++|+.++.++..++..+ +-.++|++||.+...
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------- 134 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------- 134 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------
Confidence 2222 379999999853 1 1 2235678899999999998887653 225899999987642
Q ss_pred CCcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCccc
Q 007866 148 ETLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMS 222 (586)
Q Consensus 148 E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~ 222 (586)
+......|+.||+..+.+.+.++.+ .|+++.++.||.+..+ +.+..... ...-
T Consensus 135 -----~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~--------~~~~~~~~---------~~~~ 192 (236)
T d1dhra_ 135 -----GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP--------MNRKSMPE---------ADFS 192 (236)
T ss_dssp -----CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH--------HHHHHSTT---------SCGG
T ss_pred -----CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC--------cchhhCcc---------chhh
Confidence 1223468999999999999998753 5799999999988643 22222211 1123
Q ss_pred cccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 223 DFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 223 ~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
.++..+|+|+.+..++.- ......|..+.+
T Consensus 193 ~~~~pe~va~~~~~l~s~---~~~~i~G~~i~v 222 (236)
T d1dhra_ 193 SWTPLEFLVETFHDWITG---NKRPNSGSLIQV 222 (236)
T ss_dssp GSEEHHHHHHHHHHHHTT---TTCCCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHhCC---CccCCCCCeEEE
Confidence 467789999999877651 123356766665
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=4.7e-13 Score=130.22 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=143.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHh---cCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLE---LGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~---~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+.+|.++||||++-||+.++++|.+ +| ++|.+.++.... +... ...+.......++..+.+|+.|++++.++
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~-l~~~--~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l 78 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESM-LRQL--KEELGAQQPDLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHH-HHHH--HHHHHHHCTTSEEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHH-HHHH--HHHHHhhcCCceEEEEEccCCCHHHHHHH
Confidence 35678999999999999999999986 68 589985443210 0000 00000011234678899999999988777
Q ss_pred hc-----------CCCEEEEcccCCC----------CCCChhHHHHHHHHHHHHHHHHHHhC----C--CCEEEEecCcc
Q 007866 82 LE-----------GASTVFYVDATDL----------NTDDFYNCYMIIVQGAKNVVTACREC----K--VRRLVYNSTAD 134 (586)
Q Consensus 82 l~-----------~~D~Vih~aa~~~----------~~~~~~~~~~~Nv~gt~~lleaa~~~----g--vkr~I~~SS~~ 134 (586)
++ +.|++||.||... +..+++..+++|+.++.++.+++... + -.++|++||..
T Consensus 79 ~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~ 158 (259)
T d1oaaa_ 79 LSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC 158 (259)
T ss_dssp HHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred HHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccc
Confidence 52 2479999998641 11346778999999999999988654 2 24899999987
Q ss_pred ccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-CCCceEEEEeCCCcccCCCC-----CcHHHHHHHhcC
Q 007866 135 VVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN-IDGLLTCALRPSNVFGPGDT-----QLVPLLVNLAKP 208 (586)
Q Consensus 135 vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-~~gl~~~ilRp~~v~G~~~~-----~~~~~l~~~~~~ 208 (586)
.+. +......|+.||...+.+.+.++. .+|+++.++.||.+-.+... ..-+...+....
T Consensus 159 ~~~---------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T d1oaaa_ 159 ALQ---------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQK 223 (259)
T ss_dssp GTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHH
T ss_pred ccC---------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHh
Confidence 641 223457899999999998887753 36899999999988654210 000111111110
Q ss_pred CCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEE
Q 007866 209 GWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFI 255 (586)
Q Consensus 209 g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni 255 (586)
.. ....+...+|+|++++.+++. ..-..|+.+++
T Consensus 224 ~~---------~~~r~~~p~evA~~i~~ll~~----~s~~TG~~idv 257 (259)
T d1oaaa_ 224 LK---------SDGALVDCGTSAQKLLGLLQK----DTFQSGAHVDF 257 (259)
T ss_dssp HH---------HTTCSBCHHHHHHHHHHHHHH----CCSCTTEEEET
T ss_pred cC---------CCCCCCCHHHHHHHHHHHhhh----ccCCCCCeEEe
Confidence 00 011235689999999888762 23456666654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=3.8e-12 Score=122.03 Aligned_cols=207 Identities=16% Similarity=0.067 Sum_probs=142.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE---- 83 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~---- 83 (586)
.|++|||||++-||++++++|.++| ++|.+.|+. ++ ..+.....+|+.+......+..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~--------~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLR--------RE---------GEDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESS--------CC---------SSSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------cc---------cccceEeeccccchhhhHHHHHhhhc
Confidence 3799999999999999999999999 599995543 22 1245678899998766655543
Q ss_pred --CCCEEEEcccCC------C-----CCCChhHHHHHHHHHHHHHHHHHHhC----------CCCEEEEecCccccccCC
Q 007866 84 --GASTVFYVDATD------L-----NTDDFYNCYMIIVQGAKNVVTACREC----------KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 84 --~~D~Vih~aa~~------~-----~~~~~~~~~~~Nv~gt~~lleaa~~~----------gvkr~I~~SS~~vyg~~~ 140 (586)
+.+.+++.++.. . ....++..+++|..+..++...+... +-.++|++||...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--- 139 (241)
T d1uaya_ 63 EAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--- 139 (241)
T ss_dssp HSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---
T ss_pred cccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---
Confidence 345566655543 0 11235677899999988887765432 234899999987652
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcC
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~ 217 (586)
+......|+.+|+..+.+.+.++. .+|+++.++-||.+-.+.................+ ..
T Consensus 140 ------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~--~~-- 203 (241)
T d1uaya_ 140 ------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVP--FP-- 203 (241)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCC--SS--
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCC--CC--
Confidence 123456899999999998887754 36899999999998654322222222332222221 11
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 218 GENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 218 g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
.-+...+|+|.++..++. .+-..|+++.+.+|..
T Consensus 204 ----~R~g~pedvA~~v~fL~s-----~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 204 ----PRLGRPEEYAALVLHILE-----NPMLNGEVVRLDGALR 237 (241)
T ss_dssp ----CSCCCHHHHHHHHHHHHH-----CTTCCSCEEEESTTCC
T ss_pred ----CCCcCHHHHHHHHHHHHh-----CCCCCCCEEEECCccc
Confidence 124458999999987776 3568899999988753
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.6e-12 Score=128.09 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=119.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCC---CC--CCCCCeEEEEccCCCHHHHHHHh
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLP---DS--LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~---~~--l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
|.||||||++-||+++++.|.++|. +|..++. ..|..+.. .+. .. ....++..+.+|+.|.+++.+++
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga-~v~~v~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~ 76 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPS-QSFKVYA-----TLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAAR 76 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEE-----EESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCC-CeEEEEE-----ecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhh
Confidence 5678999999999999999999994 5443322 12221100 000 01 12457899999999999998877
Q ss_pred c-----CCCEEEEcccCC-------CCCCChhHHHHHHHHHHHHHHHHH----HhCCCCEEEEecCccccccCCCCCCCC
Q 007866 83 E-----GASTVFYVDATD-------LNTDDFYNCYMIIVQGAKNVVTAC----RECKVRRLVYNSTADVVFDGSHDIHNG 146 (586)
Q Consensus 83 ~-----~~D~Vih~aa~~-------~~~~~~~~~~~~Nv~gt~~lleaa----~~~gvkr~I~~SS~~vyg~~~~~~~~~ 146 (586)
+ ..|+++|+|+.. .+..+++..+++|+.|+.++.+++ ++.+-.++|++||.....
T Consensus 77 ~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~--------- 147 (285)
T d1jtva_ 77 ERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM--------- 147 (285)
T ss_dssp HTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS---------
T ss_pred hhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC---------
Confidence 4 379999999986 134457888999999988887765 445667999999987641
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhhcCC---CCceEEEEeCCCcccC
Q 007866 147 DETLTCCWKFQDLMCDLKAQAEALVLFANNI---DGLLTCALRPSNVFGP 193 (586)
Q Consensus 147 ~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~---~gl~~~ilRp~~v~G~ 193 (586)
+.....+|+.||+..+.+.+.++.+ +|+++.++.||.+--+
T Consensus 148 ------~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 ------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 1233568999999988887766532 6899999999998644
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.36 E-value=1.7e-12 Score=124.30 Aligned_cols=200 Identities=14% Similarity=0.030 Sum_probs=133.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHH-------H
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIK-------K 80 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~-------~ 80 (586)
..||+||||+|-||+.++++|.++| ++|.++|+.. ... ........+|..+.+... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSA--------NDQ-------ADSNILVDGNKNWTEQEQSILEQTAS 65 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSC--------CTT-------SSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCc--------hhc-------ccccceeccccCchhHHHHHHHHHHH
Confidence 3589999999999999999999999 6999966543 110 112234456665543322 2
Q ss_pred Hhc--CCCEEEEcccCC----CC-C---CChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCCCCCCCC
Q 007866 81 VLE--GASTVFYVDATD----LN-T---DDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHDIHNGDE 148 (586)
Q Consensus 81 ~l~--~~D~Vih~aa~~----~~-~---~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~~~~~~E 148 (586)
.++ +.|++||+||.. .. + ..++..+++|+.++.++..++... +-.++|++||...+.
T Consensus 66 ~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------- 134 (235)
T d1ooea_ 66 SLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------- 134 (235)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS-----------
T ss_pred HhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC-----------
Confidence 222 379999999964 11 1 235667899999998888877654 124899999987652
Q ss_pred CcccCCCCCChHHHHHHHHHHHHHhhcCC-----CCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCCcccc
Q 007866 149 TLTCCWKFQDLMCDLKAQAEALVLFANNI-----DGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGENMSD 223 (586)
Q Consensus 149 ~~p~~~~p~~~Y~~sK~~~E~~l~~~~~~-----~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~ 223 (586)
+.....+|+.+|+..+.+.+.++.+ .++++..+.|+.+-.+ +.+..... .....
T Consensus 135 ----~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~--------~~~~~~~~---------~~~~~ 193 (235)
T d1ooea_ 135 ----PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP--------MNRKWMPN---------ADHSS 193 (235)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH--------HHHHHSTT---------CCGGG
T ss_pred ----CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc--------chhhhCcC---------Ccccc
Confidence 1233578999999999999988644 4678888999887432 22222211 12345
Q ss_pred ccchhHHHHHHHHHHHHhhcccccCCCcEEEEeC
Q 007866 224 FTYVENVAHAHVCAAEALDSRMVSVAGMAFFITN 257 (586)
Q Consensus 224 ~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~ 257 (586)
++..+|+++.++..+... ......|..+.+..
T Consensus 194 ~~~~~~va~~~~~~l~~~--~~~~~tG~~i~v~~ 225 (235)
T d1ooea_ 194 WTPLSFISEHLLKWTTET--SSRPSSGALLKITT 225 (235)
T ss_dssp CBCHHHHHHHHHHHHHCG--GGCCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCc--cccCCCceEEEEEe
Confidence 678999999987655421 12345677777743
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=7.6e-12 Score=121.31 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=145.1
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-CCCC-CCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-LPDS-LSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~~~~-l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+|++|||||+| -||+++++.|+++| ++|.+.++.. .... ..+. -.......+..|+.+..+..+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND--------KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTM 73 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST--------TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCH--------HHHHHHHHHHhhcCCcceeecccchHHHHHHH
Confidence 3589999999999 69999999999999 5898855432 1100 0000 1123567788899988776655
Q ss_pred hc-------CCCEEEEcccCCCC------------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCC
Q 007866 82 LE-------GASTVFYVDATDLN------------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGS 140 (586)
Q Consensus 82 l~-------~~D~Vih~aa~~~~------------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~ 140 (586)
+. ..|.+||+|+.... ..+......+|..+...+..++... +-+.+|++||.+...
T Consensus 74 ~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~--- 150 (258)
T d1qsga_ 74 FAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER--- 150 (258)
T ss_dssp HHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---
T ss_pred HHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc---
Confidence 53 36999999987621 1123556677777878777777654 223688888876531
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCc--HHHHHHHhcCCCceEEE
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQL--VPLLVNLAKPGWTKFII 215 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~--~~~l~~~~~~g~~~~i~ 215 (586)
+......|+.+|+..+.+.+.++. .+|+++.++.||.+..+..... .....+...+..+
T Consensus 151 ------------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p---- 214 (258)
T d1qsga_ 151 ------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP---- 214 (258)
T ss_dssp ------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST----
T ss_pred ------------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCC----
Confidence 123356799999999988776643 3689999999999987643321 1222222222111
Q ss_pred cCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 216 GSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 216 g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
..-+...+|+|.++..++. .......|+++.+.+|..
T Consensus 215 -----l~R~~~peeia~~v~fL~s---~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 215 -----IRRTVTIEDVGNSAAFLCS---DLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp -----TSSCCCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTGG
T ss_pred -----CCCCcCHHHHHHHHHHHhC---chhcCccCceEEECcCHH
Confidence 1225668999999886663 113468899999988754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.8e-11 Score=119.41 Aligned_cols=193 Identities=12% Similarity=0.054 Sum_probs=133.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC-C-C--CCCCCCCeEEEEccCCCHHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-L-P--DSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~-~-~--~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..+|+++||||++-||++++++|+++| ++|.+.++ +.++-. . . ..........+.+|+.+.+.....
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r--------~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTAR--------SKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQF 82 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEES--------CHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC--------CHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHH
Confidence 467999999999999999999999999 59999544 322100 0 0 001234577888999987666544
Q ss_pred h-------cCCCEEEEcccCCC-------CCCChhHHHHHHHHHHHHHHHHHHhC---CCCEEEEecCccccccCCCCCC
Q 007866 82 L-------EGASTVFYVDATDL-------NTDDFYNCYMIIVQGAKNVVTACREC---KVRRLVYNSTADVVFDGSHDIH 144 (586)
Q Consensus 82 l-------~~~D~Vih~aa~~~-------~~~~~~~~~~~Nv~gt~~lleaa~~~---gvkr~I~~SS~~vyg~~~~~~~ 144 (586)
. .+.|+++++|+... +..+....+++|+.++.++.+++... +-.++|++||.+.+.
T Consensus 83 ~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~------- 155 (269)
T d1xu9a_ 83 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------- 155 (269)
T ss_dssp HHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS-------
T ss_pred HHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC-------
Confidence 3 35899999998761 22345678999999998887766431 225899999987641
Q ss_pred CCCCCcccCCCCCChHHHHHHHHHHHHHhhcC-----CCCceEEEEeCCCcccCCCCCcHHHHHHHhcCCCceEEEcCCC
Q 007866 145 NGDETLTCCWKFQDLMCDLKAQAEALVLFANN-----IDGLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGSGE 219 (586)
Q Consensus 145 ~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~-----~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~~g~~~~i~g~g~ 219 (586)
+......|+.||+..+.+.+.++. ..|+++..+.||.+-.+ +......+.
T Consensus 156 --------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~--------~~~~~~~~~--------- 210 (269)
T d1xu9a_ 156 --------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE--------TAMKAVSGI--------- 210 (269)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH--------HHHHHSCGG---------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc--------HHHHhccCC---------
Confidence 223457899999999988887753 25788999999988421 222222221
Q ss_pred ccccccchhHHHHHHHHHHH
Q 007866 220 NMSDFTYVENVAHAHVCAAE 239 (586)
Q Consensus 220 ~~~~~i~v~Dva~ai~~ale 239 (586)
........+++|+.++.+..
T Consensus 211 ~~~~~~~~e~~a~~i~~~~~ 230 (269)
T d1xu9a_ 211 VHMQAAPKEECALEIIKGGA 230 (269)
T ss_dssp GGGGCBCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHhh
Confidence 22344567899998887765
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.18 E-value=1.6e-10 Score=113.22 Aligned_cols=226 Identities=10% Similarity=-0.011 Sum_probs=139.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCC--------CCCC-----CCC-CCCCCCCCeEEEEccCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDP--------SESN-----SLL-PDSLSSGRAEYHQVDVR 73 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r--------~~~~-----~~~-~~~l~~~~~~~~~~Dl~ 73 (586)
+..++||||++-||+.++++|.++| ++|.+.++........ .+.. ... .............+|++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 4678999999999999999999999 5888754432100000 0000 000 00001123455678899
Q ss_pred CHHHHHHHhc-------CCCEEEEcccCCCCC-------CC--------------hhHHHHHHHHHHHHHHHHHHhC---
Q 007866 74 DISQIKKVLE-------GASTVFYVDATDLNT-------DD--------------FYNCYMIIVQGAKNVVTACREC--- 122 (586)
Q Consensus 74 d~~~l~~~l~-------~~D~Vih~aa~~~~~-------~~--------------~~~~~~~Nv~gt~~lleaa~~~--- 122 (586)
+.+++.++++ +.|++||+||..... .+ ....+.+|+.++..+.+++...
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 9888877653 589999999976210 11 1235788888888888765431
Q ss_pred -------CCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCccc
Q 007866 123 -------KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFG 192 (586)
Q Consensus 123 -------gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G 192 (586)
+-.++|++||..... +......|+.+|...+.+.+.++. .+|+++.++-||.+-.
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~ 225 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQ---------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 225 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCC
T ss_pred hHHHhcCCCCcccccccccccC---------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccccc
Confidence 233677777765431 223456899999999998887753 3689999999986321
Q ss_pred CCCCCcHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCcC
Q 007866 193 PGDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262 (586)
Q Consensus 193 ~~~~~~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~t 262 (586)
.....+...+......+. ..-+...+|+|.+++.++. ....-..|+++.+.+|..++
T Consensus 226 --~~~~~~~~~~~~~~~~pl--------~~R~~~peeiA~~v~fL~S---~~s~~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 226 --VDDMPPAVWEGHRSKVPL--------YQRDSSAAEVSDVVIFLCS---SKAKYITGTCVKVDGGYSLT 282 (284)
T ss_dssp --GGGSCHHHHHHHHTTCTT--------TTSCBCHHHHHHHHHHHHS---GGGTTCCSCEEEESTTGGGC
T ss_pred --cccCCHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhC---chhcCccCCeEEECcChhcc
Confidence 112233344444433221 0124569999999987664 11345789999999886543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.3e-11 Score=120.79 Aligned_cols=176 Identities=17% Similarity=0.062 Sum_probs=117.1
Q ss_pred CCeE-EEEcCCCchHHHHHHHHHhc-CCcEEEEecCCcccccCCCCCCCC-CCCCC--CCCCeEEEEccCCCHHHHHHHh
Q 007866 8 PRTC-VVLNGRGFVGRSLVLRLLEL-GKCIVRVTDSTQSLQLDPSESNSL-LPDSL--SSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 8 ~~~I-lVTGatG~IG~~lv~~L~~~-g~~~V~~~d~~~~~~l~r~~~~~~-~~~~l--~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
+|+| +||||++-||..++++|+++ | .+|++.++. .++.+ ..+.+ ...++.++.+|+.|.+++++++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~--------~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~ 72 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARD--------VTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALR 72 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESS--------HHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECC--------HHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHH
Confidence 4555 89999999999999999987 7 589885443 22110 00001 1346889999999998887665
Q ss_pred c-------CCCEEEEcccCCCC-------CCChhHHHHHHHHHHHHHHHHHHhC--CCCEEEEecCccccccCCCC----
Q 007866 83 E-------GASTVFYVDATDLN-------TDDFYNCYMIIVQGAKNVVTACREC--KVRRLVYNSTADVVFDGSHD---- 142 (586)
Q Consensus 83 ~-------~~D~Vih~aa~~~~-------~~~~~~~~~~Nv~gt~~lleaa~~~--gvkr~I~~SS~~vyg~~~~~---- 142 (586)
+ +.|++||+||.... ..+.+..+++|+.|+.++.+++... .-.|+|++||..........
T Consensus 73 ~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~ 152 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPEL 152 (275)
T ss_dssp HHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHH
T ss_pred HHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhh
Confidence 3 47999999998621 1235678999999999999988653 12489999997653210000
Q ss_pred -----CCCCCC-----------------CcccCCCCCChHHHHHHHHHHHHHhhc-------CCCCceEEEEeCCCccc
Q 007866 143 -----IHNGDE-----------------TLTCCWKFQDLMCDLKAQAEALVLFAN-------NIDGLLTCALRPSNVFG 192 (586)
Q Consensus 143 -----~~~~~E-----------------~~p~~~~p~~~Y~~sK~~~E~~l~~~~-------~~~gl~~~ilRp~~v~G 192 (586)
.....+ ....+..|...|+.||.....+.+.++ ...|+.+.++-||.+--
T Consensus 153 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T 231 (275)
T d1wmaa1 153 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 231 (275)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCS
T ss_pred hhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccC
Confidence 000000 001123456789999998776654332 23589999999998853
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.13 E-value=9.7e-11 Score=114.36 Aligned_cols=221 Identities=10% Similarity=0.044 Sum_probs=134.0
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|++|||||+| -||..++++|+++| ++|.+.++... +.... ..+.. .........+|+.+.+++.++++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~~--~~~~~--~~l~~--~~~~~~~~~~d~~~~~~~~~~~~ 75 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES--LEKRV--RPIAQ--ELNSPYVYELDVSKEEHFKSLYN 75 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT--THHHH--HHHHH--HTTCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCHH--HHHHH--HHHHh--hCCceeEeeecccchhhHHHHHH
Confidence 3579999999988 69999999999999 59999665321 00000 00000 12356778999999877766653
Q ss_pred -------CCCEEEEcccCCCC--------CCChhHHHHHHHH---HHHHHHHHHHhC-CCC-EEEEecCccccccCCCCC
Q 007866 84 -------GASTVFYVDATDLN--------TDDFYNCYMIIVQ---GAKNVVTACREC-KVR-RLVYNSTADVVFDGSHDI 143 (586)
Q Consensus 84 -------~~D~Vih~aa~~~~--------~~~~~~~~~~Nv~---gt~~lleaa~~~-gvk-r~I~~SS~~vyg~~~~~~ 143 (586)
++|++||+++.... ..........+.. +........... +-. .++..||.+...
T Consensus 76 ~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~------ 149 (274)
T d2pd4a1 76 SVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------ 149 (274)
T ss_dssp HHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------
T ss_pred HHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc------
Confidence 57999999997611 1122222222222 222333332222 222 355555554431
Q ss_pred CCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcH--HHHHHHhcCCCceEEEcCC
Q 007866 144 HNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSG 218 (586)
Q Consensus 144 ~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~--~~l~~~~~~g~~~~i~g~g 218 (586)
+......|+.+|...+.+.+..+. .+|+++.++.||.+.-+...... ...........
T Consensus 150 ---------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~-------- 212 (274)
T d2pd4a1 150 ---------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINA-------- 212 (274)
T ss_dssp ---------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHS--------
T ss_pred ---------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhh--------
Confidence 224456899999999998776543 26899999999988765433221 22222221111
Q ss_pred CccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 219 ENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 219 ~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..-+...+|+|.+++.++.. ......|+++.+.+|..
T Consensus 213 -p~~r~~~pedIA~~v~fL~S~---~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 213 -PLRKNVSLEEVGNAGMYLLSS---LSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp -TTSSCCCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred -hccCCcCHHHHHHHHHHHhCh---hhCCCcCceEEECCChh
Confidence 122356699999999877641 13457899999988763
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.10 E-value=5e-10 Score=110.45 Aligned_cols=231 Identities=9% Similarity=0.039 Sum_probs=139.3
Q ss_pred CCCCCCCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCccc-----ccCCCCC-CC-CCCCCCCC--CCeEEEE
Q 007866 1 MPFDEAIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSL-----QLDPSES-NS-LLPDSLSS--GRAEYHQ 69 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~-----~l~r~~~-~~-~~~~~l~~--~~~~~~~ 69 (586)
|++ ++.+|++|||||+| -||+.++++|+++| .+|.+.++.... ...+... .. ........ .++..+.
T Consensus 2 ~~~-~L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (297)
T d1d7oa_ 2 LPI-DLRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CCC-CCTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEEC
T ss_pred CCc-CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 444 46789999999988 79999999999999 588886543210 0000000 00 00000000 0111122
Q ss_pred ccC---------------------CCHHH----HHHHhcCCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHH
Q 007866 70 VDV---------------------RDISQ----IKKVLEGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNV 115 (586)
Q Consensus 70 ~Dl---------------------~d~~~----l~~~l~~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~l 115 (586)
.++ .+.+. +.+.+.++|++||+||... ...++...+++|+.+..++
T Consensus 80 ~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~ 159 (297)
T d1d7oa_ 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL 159 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred hhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhh
Confidence 111 22222 2333456899999998641 1234678899999999999
Q ss_pred HHHHHhCCC--CEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhh----cCCCCceEEEEeCCC
Q 007866 116 VTACRECKV--RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFA----NNIDGLLTCALRPSN 189 (586)
Q Consensus 116 leaa~~~gv--kr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~----~~~~gl~~~ilRp~~ 189 (586)
..++..... .+.+.+|+.+.... .......|+.+|...+.+.+.. +.++|+++.++.||.
T Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~ 225 (297)
T d1d7oa_ 160 LSHFLPIMNPGGASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGP 225 (297)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred hhHHHHHhhcCCcceeeeehhhccc--------------ccccccceecccccccccccccchhccccceEEeccccccc
Confidence 988765532 24556665544211 1234557999998888776544 333689999999999
Q ss_pred cccCCCCC--cHHHHHHHhcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCC
Q 007866 190 VFGPGDTQ--LVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLE 259 (586)
Q Consensus 190 v~G~~~~~--~~~~l~~~~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~ 259 (586)
+..+.... ....+.+...+..|. .-+...+|+|.+++.++. .......|+++.+.+|.
T Consensus 226 i~T~~~~~~~~~~~~~~~~~~~~Pl---------gR~~~peevA~~v~fL~S---~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 226 LGSRAAKAIGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVS---PLASAITGATIYVDNGL 285 (297)
T ss_dssp CBCCCSSCCSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTS---GGGTTCCSCEEEESTTG
T ss_pred ccchhhhhccCCHHHHHHHHhCCCC---------CCCCCHHHHHHHHHHHhC---chhcCCcCceEEECcCH
Confidence 98775443 233344444332221 124569999999987663 11345789999998874
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.10 E-value=5.1e-11 Score=115.95 Aligned_cols=222 Identities=10% Similarity=-0.022 Sum_probs=135.0
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 6 AIPRTCVVLNGRG--FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 6 ~~~~~IlVTGatG--~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+|+++||||+| .||++++++|.++| .+|.+.++....... ...+. ...+...+.+|+.+.++..++++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~~~~------~~~~~-~~~~~~~~~~dv~~~~~~~~~~~ 75 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQ------RITDR-LPAKAPLLELDVQNEEHLASLAG 75 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHHHHH------HHHTT-SSSCCCEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHHHHH------HHHHH-cCCceeeEeeecccccccccccc
Confidence 4689999999766 49999999999999 588885543311000 01111 23457788999999866554432
Q ss_pred ----------CCCEEEEcccCCC----C--------CCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCccccccCC
Q 007866 84 ----------GASTVFYVDATDL----N--------TDDFYNCYMIIVQGAKNVVTACRECK-VRRLVYNSTADVVFDGS 140 (586)
Q Consensus 84 ----------~~D~Vih~aa~~~----~--------~~~~~~~~~~Nv~gt~~lleaa~~~g-vkr~I~~SS~~vyg~~~ 140 (586)
..|+++|+++... . ..+....+..|.........++.... -...+.++|.....
T Consensus 76 ~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--- 152 (268)
T d2h7ma1 76 RVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--- 152 (268)
T ss_dssp HHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---
T ss_pred hhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---
Confidence 2699999999651 1 11233445556666665655554432 12344444443321
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCC--------CCC----cHHHHHHH
Q 007866 141 HDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPG--------DTQ----LVPLLVNL 205 (586)
Q Consensus 141 ~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~--------~~~----~~~~l~~~ 205 (586)
.......|+.+|...+.+.+.++. .+|+++.++.||.+-.+. ... ....+.+.
T Consensus 153 ------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (268)
T d2h7ma1 153 ------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEG 220 (268)
T ss_dssp ------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred ------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHH
Confidence 112345899999999998886653 368999999999886431 110 11111222
Q ss_pred hcCCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCCc
Q 007866 206 AKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPI 261 (586)
Q Consensus 206 ~~~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~~ 261 (586)
..+..| ..+.+...+|+|.++..++. .......|+++.+.+|...
T Consensus 221 ~~~~~p--------l~rr~~~p~dva~~v~fL~S---d~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 221 WDQRAP--------IGWNMKDATPVAKTVCALLS---DWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp HHHHCT--------TCCCTTCCHHHHHHHHHHHS---SSCTTCCSEEEEESTTGGG
T ss_pred HHhcCC--------CCCCCCCHHHHHHHHHHHhC---chhcCccCCEEEECcCccc
Confidence 211111 11335669999999987663 1134578999999887543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.03 E-value=4.6e-09 Score=101.00 Aligned_cols=216 Identities=12% Similarity=-0.046 Sum_probs=129.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh-----
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL----- 82 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l----- 82 (586)
||.|+||||+|-||+.++++|.++| ++|.+.|+. ..+ ...|+.+.+......
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~--------~~~--------------~~~d~~~~~~~~~~~~~~~~ 57 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIR--------DAE--------------VIADLSTAEGRKQAIADVLA 57 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS--------SSS--------------EECCTTSHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC--------hHH--------------HHHHhcCHHHHHHHHHHHHH
Confidence 6889999999999999999999999 599985542 210 245777655444322
Q ss_pred ---cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHH----hCCCCEEEEecCccccccCCCCCCCCCC-------
Q 007866 83 ---EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACR----ECKVRRLVYNSTADVVFDGSHDIHNGDE------- 148 (586)
Q Consensus 83 ---~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~----~~gvkr~I~~SS~~vyg~~~~~~~~~~E------- 148 (586)
...|+++++|+.............+|..+...+.+... +........+++........... +...
T Consensus 58 ~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 136 (257)
T d1fjha_ 58 KCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKN-PLALALEAGEE 136 (257)
T ss_dssp TCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGC-TTHHHHHHTCH
T ss_pred HhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhh-hhhhhccCCcE
Confidence 24799999999876666677788888888777766543 33444555555543321110000 0000
Q ss_pred -------CcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHH--HHHHHhcCCCceEEEc
Q 007866 149 -------TLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVP--LLVNLAKPGWTKFIIG 216 (586)
Q Consensus 149 -------~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~--~l~~~~~~g~~~~i~g 216 (586)
.......+..+|+.+|...+.+.+.++. .+|+++.++.||.+-.+....... ...+...+
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~-------- 208 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAK-------- 208 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHh--------
Confidence 0000111234699999999999887753 368999999999986553221111 01111111
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCC
Q 007866 217 SGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNL 258 (586)
Q Consensus 217 ~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~ 258 (586)
...+..-+...+|+|.++..++. ....-..|+++.+.+|
T Consensus 209 ~~~PlgR~g~p~eva~~v~fL~S---~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 209 FVPPMGRRAEPSEMASVIAFLMS---PAASYVHGAQIVIDGG 247 (257)
T ss_dssp CCCSTTSCCCTHHHHHHHHHHTS---GGGTTCCSCEEEESTT
T ss_pred cCCCCCCCcCHHHHHHHHHHHhC---chhCCccCceEEeCCC
Confidence 11122235678999999987653 1134578999999876
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.94 E-value=1.3e-08 Score=98.10 Aligned_cols=220 Identities=12% Similarity=0.008 Sum_probs=131.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC----HHHHHH----
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD----ISQIKK---- 80 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d----~~~l~~---- 80 (586)
...|||||++-||+.++++|+++| .+|++.|+..+....+.. .++ .............|..+ .+.+.+
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLV--AEL-NAARAGSAVLCKGDLSLSSSLLDCCEDIIDC 77 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHH--HHH-HHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHH--HHH-HhhcCCceEEEecccccchhHHHHHHHHHHH
Confidence 368999999999999999999999 599996554211000000 000 00122355666666543 333333
Q ss_pred ---HhcCCCEEEEcccCCCCC------------------CChhHHHHHHHHHHHHHHHHHHhC---------CCCEEEEe
Q 007866 81 ---VLEGASTVFYVDATDLNT------------------DDFYNCYMIIVQGAKNVVTACREC---------KVRRLVYN 130 (586)
Q Consensus 81 ---~l~~~D~Vih~aa~~~~~------------------~~~~~~~~~Nv~gt~~lleaa~~~---------gvkr~I~~ 130 (586)
.+.+.|++||+||..... .........|..+........... ....++.+
T Consensus 78 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (266)
T d1mxha_ 78 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL 157 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred HHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhh
Confidence 234689999999975211 012334455555555555444432 12245555
Q ss_pred cCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC---CCCceEEEEeCCCcccCCCCCcHHHHHHHhc
Q 007866 131 STADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN---IDGLLTCALRPSNVFGPGDTQLVPLLVNLAK 207 (586)
Q Consensus 131 SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~---~~gl~~~ilRp~~v~G~~~~~~~~~l~~~~~ 207 (586)
||..... +......|+.||...+.+.+.++. .+|+++..+.||.+.-+... -....+...
T Consensus 158 ~~~~~~~---------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~--~~~~~~~~~ 220 (266)
T d1mxha_ 158 CDAMTDL---------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAM--PQETQEEYR 220 (266)
T ss_dssp CCGGGGS---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSS--CHHHHHHHH
T ss_pred hhccccc---------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccC--CHHHHHHHH
Confidence 5554321 223467899999999988777654 36899999999998655322 223334443
Q ss_pred CCCceEEEcCCCccccccchhHHHHHHHHHHHHhhcccccCCCcEEEEeCCCC
Q 007866 208 PGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEP 260 (586)
Q Consensus 208 ~g~~~~i~g~g~~~~~~i~v~Dva~ai~~ale~~~~~~~~~~g~~~ni~~~~~ 260 (586)
+..+. + +-+...+|+|.+++.++.- ...-..|+++.+.+|..
T Consensus 221 ~~~pl---~-----r~~~~peeva~~v~fL~s~---~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 221 RKVPL---G-----QSEASAAQIADAIAFLVSK---DAGYITGTTLKVDGGLI 262 (266)
T ss_dssp TTCTT---T-----SCCBCHHHHHHHHHHHHSG---GGTTCCSCEEEESTTGG
T ss_pred hcCCC---C-----CCCCCHHHHHHHHHHHhCc---hhCCccCCeEEECccHh
Confidence 33221 1 2235699999999877741 12347899999988753
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.88 E-value=9.2e-09 Score=102.79 Aligned_cols=168 Identities=6% Similarity=-0.049 Sum_probs=105.8
Q ss_pred CCeEEEEc--CCCchHHHHHHHHHhcCCcEEEEecCCcccc-------cCCCCCCCCCCCCC-CCCCeEEEE--------
Q 007866 8 PRTCVVLN--GRGFVGRSLVLRLLELGKCIVRVTDSTQSLQ-------LDPSESNSLLPDSL-SSGRAEYHQ-------- 69 (586)
Q Consensus 8 ~~~IlVTG--atG~IG~~lv~~L~~~g~~~V~~~d~~~~~~-------l~r~~~~~~~~~~l-~~~~~~~~~-------- 69 (586)
+|.+|||| ++.-||+.+++.|.+.| .+|.+.+...... ..+.... ...... .........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDND-MIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTGG-GEETTTEECCEEEEEECCTTCSSG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhhH-HHHHHHhhhhhhhcccccceehhh
Confidence 58899999 55689999999999999 5888754432100 0000000 000000 000111222
Q ss_pred ------------ccCCCHHHHH-------HHhcCCCEEEEcccCCC---------CCCChhHHHHHHHHHHHHHHHHHHh
Q 007866 70 ------------VDVRDISQIK-------KVLEGASTVFYVDATDL---------NTDDFYNCYMIIVQGAKNVVTACRE 121 (586)
Q Consensus 70 ------------~Dl~d~~~l~-------~~l~~~D~Vih~aa~~~---------~~~~~~~~~~~Nv~gt~~lleaa~~ 121 (586)
+|+.+.++++ +.+.+.|++||.||... ...++...+++|+.++.++.+++..
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 2444433222 33446899999998642 2235677889999999888888766
Q ss_pred C--CCCEEEEecCccccccCCCCCCCCCCCcccCCCCCChHHHHHHHHHHHHHhhcC----CCCceEEEEeCCCcc
Q 007866 122 C--KVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN----IDGLLTCALRPSNVF 191 (586)
Q Consensus 122 ~--gvkr~I~~SS~~vyg~~~~~~~~~~E~~p~~~~p~~~Y~~sK~~~E~~l~~~~~----~~gl~~~ilRp~~v~ 191 (586)
. .-.++|.+||.+.... .+.+...|+.+|...|.+.+.++. ++|+++.++.||.+-
T Consensus 160 ~m~~~GsIv~iss~~~~~~--------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~ 221 (329)
T d1uh5a_ 160 IMKPQSSIISLTYHASQKV--------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLK 221 (329)
T ss_dssp GEEEEEEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_pred hcccccccccceeehhccc--------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCccc
Confidence 4 2247999988765310 112356799999999988887753 358999999999773
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.50 E-value=1.8e-08 Score=92.40 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCC-CCCCCeEEEEccCCCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDS-LSSGRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l 82 (586)
...+|+|+||||+|.||+.+++.|.++| .+|.++++.. ++. ...+. ....++....+|+.|.+++.+++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKL--------DKAQAAADSVNKRFKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSH--------HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccch--------HHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence 3468999999999999999999999999 5999955443 210 00000 11134567889999999999999
Q ss_pred cCCCEEEEcccCC
Q 007866 83 EGASTVFYVDATD 95 (586)
Q Consensus 83 ~~~D~Vih~aa~~ 95 (586)
.++|+|||+|+..
T Consensus 91 ~~iDilin~Ag~g 103 (191)
T d1luaa1 91 KGAHFVFTAGAIG 103 (191)
T ss_dssp TTCSEEEECCCTT
T ss_pred cCcCeeeecCccc
Confidence 9999999999875
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=1.4e-05 Score=68.70 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=77.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
||.|+||+|.+|++++-.|..+|. .++.++|+........ .+.+.-...... .-+ ......+.++++|+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~-----Dl~~~~~~~~~~---~~~-~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA-----DLSHIETRATVK---GYL-GPEQLPDCLKGCDVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH-----HHTTSSSSCEEE---EEE-SGGGHHHHHTTCSEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH-----HHhhhhhhcCCC---eEE-cCCChHHHhCCCCEE
Confidence 799999999999999999998875 5799988754210000 011110111111 111 123445778999999
Q ss_pred EEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 89 FYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 89 ih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
|.+||.. .+..+.....+.|+.-.+.+++.+.+++.+-++.+-|
T Consensus 73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999976 3445667889999999999999999997654444433
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.76 E-value=1.4e-05 Score=67.75 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
|+|+|.|+ |.+|+.+++.|.+.| ++|+++|.++.. .+. .. ...+...+.+|..|++.+.++ ++++|+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~--~~~-----~~---~~~~~~vi~Gd~~~~~~l~~~~i~~a~~ 68 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDI--CKK-----AS---AEIDALVINGDCTKIKTLEDAGIEDADM 68 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHH--HHH-----HH---HHCSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhh--hhh-----hh---hhhhhhhccCcccchhhhhhcChhhhhh
Confidence 79999987 999999999999999 499997765421 100 00 112578899999999999887 578999
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
++-+... . +.|+..+ ..++..++++.|
T Consensus 69 vv~~t~~------d----~~N~~~~----~~~k~~~~~~iI 95 (132)
T d1lssa_ 69 YIAVTGK------E----EVNLMSS----LLAKSYGINKTI 95 (132)
T ss_dssp EEECCSC------H----HHHHHHH----HHHHHTTCCCEE
T ss_pred hcccCCc------H----HHHHHHH----HHHHHcCCceEE
Confidence 9875322 1 3454333 355677887766
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.69 E-value=2.2e-05 Score=67.62 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..|||.|.|+ |++|..++..|..+|. .+++++|+.... .+... ..+.+. ..........+|. +.+.+
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~--~~g~a-~Dl~~a~~~~~~~~~~~~d~-------~~~~~ 72 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR--TKGDA-LDLEDAQAFTAPKKIYSGEY-------SDCKD 72 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHGGGGGSCCCEEEECCG-------GGGTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccch--hHHHH-HHHhccccccCCceEeeccH-------HHhcc
Confidence 3679999995 9999999999999873 489998876531 10000 000000 0112334555554 24689
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+|+||.+|+.. ....+.......|+.-.+.+++...+++.+-++.+-
T Consensus 73 adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivv 120 (146)
T d1ez4a1 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120 (146)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 99999999986 344556778889999999999999998876555443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00023 Score=60.91 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC---cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~---~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
|+||.|.||||++|+.+++.|+++.. .+++.+. ++...+..... ..-.....++.+.+ .+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~--------ss~s~g~~~~~---~~~~~~~~~~~~~~----~~~~ 65 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFS--------TSQLGQAAPSF---GGTTGTLQDAFDLE----ALKA 65 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEE--------SSSTTSBCCGG---GTCCCBCEETTCHH----HHHT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEee--------ccccccccccc---cCCceeeecccchh----hhhc
Confidence 57999999999999999998887642 3466532 22121111110 11112223344433 3578
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTA 133 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~ 133 (586)
+|+||.+++.. -+..+...+.++|.+ .+|=.||.
T Consensus 66 ~DivF~a~~~~---------------~s~~~~~~~~~~g~~~~VID~Ss~ 100 (146)
T d1t4ba1 66 LDIIVTCQGGD---------------YTNEIYPKLRESGWQGYWIDAASS 100 (146)
T ss_dssp CSEEEECSCHH---------------HHHHHHHHHHHTTCCCEEEECSST
T ss_pred CcEEEEecCch---------------HHHHhhHHHHhcCCCeecccCCcc
Confidence 99999987431 244566677777864 34444443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.51 E-value=0.00064 Score=58.02 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=76.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+||+|.+|+.++..|..+|. .++.++|+....+..+... ..+.+ .....+......--.|. +.++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a-~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLR-EDIYDALAGTRSDANIYVESDENL----RIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHH-HHHHHHHTTSCCCCEEEEEETTCG----GGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccc-ccchhcccccccCCccccCCcchH----HHhccc
Confidence 6899999999999999999998883 4899988764210000000 00001 01112333322211122 367899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
|+||-+||.. .+..+.....+.|..-.+.+++...+++-+.++.+
T Consensus 76 DvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred eEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 9999999976 34446778899999999999999988875555433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00023 Score=60.89 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=74.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhc-C-CcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLEL-G-KCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~-g-~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
|||.|+|++|.+|++++-.|..+ + -.++..+|+... .+... -.+.+......... ..+-.+. +.++++|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~---~~g~a-~Dl~h~~~~~~~~~-~~~~~~~----~~~~~aD 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVA-VDLSHIPTAVKIKG-FSGEDAT----PALEGAD 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT---HHHHH-HHHHTSCSSCEEEE-ECSSCCH----HHHTTCS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc---chhHH-HHHHCCccccCCcE-EEcCCCc----cccCCCC
Confidence 79999999999999999887543 3 148999886431 11000 01111111112222 2222333 3578999
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr-~I~~S 131 (586)
+||-+||.. .+..+.....+.|..-.+.+.+...+++.+. +|.+|
T Consensus 72 vvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999999986 3455667889999999999999999887543 44444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.30 E-value=0.00025 Score=61.40 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+||.|.|+ |.+|+.++..|...+..++.++|..... ..... ..+.+. ...........+ ..++++++
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 76 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGM--PEGKA-LDLSHVTSVVDTNVSVRAEY-----SYEAALTG 76 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSH--HHHHH-HHHHHHHHHTTCCCCEEEEC-----SHHHHHTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEecccc--chhHH-HHHhhhccccCCeeEEeccC-----chhhhhcC
Confidence 4579999997 9999999998888886689998765421 00000 000000 000111111111 12456789
Q ss_pred CCEEEEcccCCC-CC-----CChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 85 ASTVFYVDATDL-NT-----DDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 85 ~D~Vih~aa~~~-~~-----~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
+|+|+-+|+... +. .........|+.-.+.+++.+.+++.+-++.+-|
T Consensus 77 adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 77 ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999999998762 11 2456778899999999999999987665554433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.27 E-value=0.00044 Score=58.11 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=54.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
|+++|.|+ |.+|+++++.|.+.|+ +|+++|.++.. . +.+.......+.+|..+++.+.++ ++++|+
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~-~vvvid~d~~~--~---------~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH-EVLAVDINEEK--V---------NAYASYATHAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEESCHHH--H---------HHTTTTCSEEEECCTTCTTHHHHHTGGGCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-eEEEecCcHHH--H---------HHHHHhCCcceeeecccchhhhccCCccccE
Confidence 56888865 9999999999999995 89997766421 1 111234567889999999999877 788998
Q ss_pred EEEccc
Q 007866 88 VFYVDA 93 (586)
Q Consensus 88 Vih~aa 93 (586)
||-+.+
T Consensus 68 vi~~~~ 73 (134)
T d2hmva1 68 VIVAIG 73 (134)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 886553
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.20 E-value=0.00045 Score=61.02 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
..||.||||+|.||++++..|.+.+. ..++.+|+............ .+.+ ...+....+..- .+ ..+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m-dl~d-~a~~~~~~~~~~-~~---~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM-ELED-SLYPLLREVSIG-ID---PYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHT-TTCTTEEEEEEE-SC---HHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh-hhcc-cccccccCcccc-cc---chhh
Confidence 34899999999999999999886431 14666665432100000000 0000 011122222211 11 2567
Q ss_pred hcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCC--CEEEEec
Q 007866 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKV--RRLVYNS 131 (586)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gv--kr~I~~S 131 (586)
++++|+||-+||.. .+........+.|..-.+.+.+++.++.- -+++.+|
T Consensus 98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 89999999999987 45667788999999999999999988532 2455554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.16 E-value=0.00081 Score=57.16 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=69.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCCCC-CCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLS-SGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~l~-~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
+||.|.|+ |.+|+.++-.|+.+|. .++.++|+.... ..... ..+.+... ........+| .+.++++|
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~-------~~~~~~ad 70 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEK--AIGEA-MDINHGLPFMGQMSLYAGD-------YSDVKDCD 70 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC-----CCHHH-HHHTTSCCCTTCEEEC--C-------GGGGTTCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCc--cceee-eeeccCcccCCCeeEeeCc-------HHHhCCCc
Confidence 58999997 9999999999998874 479998876531 11000 01111111 1223333332 23578999
Q ss_pred EEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 87 TVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 87 ~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
+|+-+|+.. .+..+.....+.|+.-.+.+++.+.+++.+-++
T Consensus 71 ivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ 113 (142)
T d1y6ja1 71 VIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 113 (142)
T ss_dssp EEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred eEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceE
Confidence 999999977 345567788999999999999999988755433
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.15 E-value=0.0017 Score=55.24 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=55.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC---cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK---CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~---~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|.|||||+|+.+++.|+++.+ .++..+... + ..+.... +... .....+..|. +.++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~------~--~~gk~~~-~~~~--~~~~~~~~~~----~~~~~~ 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS------Q--IGVPAPN-FGKD--AGMLHDAFDI----ESLKQL 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS------C--CSSBCCC-SSSC--CCBCEETTCH----HHHTTC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc------c--ccccccc-cCCc--ceeeecccch----hhhccc
Confidence 6899999999999999999887542 245542211 1 1111111 1111 1111223343 346789
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR-RLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk-r~I~~SS~~ 134 (586)
|+||.+.... -+..+...+.+.|.+ .+|=.||..
T Consensus 66 DvvF~alp~~---------------~s~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 66 DAVITCQGGS---------------YTEKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred cEEEEecCch---------------HHHHHhHHHHHcCCceEEEeCCccc
Confidence 9999887431 144566777778875 466666653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.11 E-value=0.0004 Score=59.07 Aligned_cols=109 Identities=9% Similarity=-0.046 Sum_probs=73.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC-CCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS-LSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~-l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
||.|+||+|.+|+.++-.|..+|. .++.++|+.......+... -.+.+. ....+.....+|. + .+.++|+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a-~Dl~~~~~~~~~~~i~~~~~---~----~~~~aDi 73 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQA-ADTNHGIAYDSNTRVRQGGY---E----DTAGSDV 73 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHH-HHHHHHHTTTCCCEEEECCG---G----GGTTCSE
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceee-cchhhcccccCCceEeeCCH---H----HhhhcCE
Confidence 799999999999999999998874 3789988643110000000 001110 0122344444443 2 3679999
Q ss_pred EEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE
Q 007866 88 VFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (586)
Q Consensus 88 Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr 126 (586)
|+-+||.. .+..+.....+.|..-.+.+.+...+++-+-
T Consensus 74 VvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~ 113 (142)
T d1o6za1 74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDY 113 (142)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred EEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999976 3445677889999999999999999987543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.06 E-value=0.0005 Score=58.60 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=73.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|| |.+|+.++..|...|- .++.++|+.... .+.... .+.+ .....+......+ |. +.++++
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~--~~~~~~-d~~~~~~~~~~~~~i~~~~--~~----~~~~da 70 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGI--PQGKAL-DMYESGPVGLFDTKVTGSN--DY----ADTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSH--HHHHHH-HHHTTHHHHTCCCEEEEES--CG----GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEecccccc--chhhhh-hhhcccchhcccceEEecC--CH----HHhcCC
Confidence 68999996 9999999999998862 489998876531 010000 0000 0011223333222 22 357899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
|+|+-+||.. .+..+.....+.|..-.+.+++...+++.+-++.
T Consensus 71 dvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivi 115 (142)
T d1guza1 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115 (142)
T ss_dssp SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred eEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 9999999976 3445567888999999999999998877554443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.03 E-value=0.0014 Score=56.02 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.++||.|+|| |++|++++..|...|. .++.++|+.... .+... ..+. ..+..........|. +.++
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~--~~g~a-~Dl~~~~~~~~~~~~~~~~d~-------~~l~ 73 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESK--AIGDA-MDFNHGKVFAPKPVDIWHGDY-------DDCR 73 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHTTSSSSCCEEEECCG-------GGTT
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecccc--ccchh-ccHhhCccccCCCeEEEECCH-------HHhc
Confidence 4679999996 9999999999998874 479998876531 00000 0010 011122344444443 3578
Q ss_pred CCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE
Q 007866 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR 126 (586)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr 126 (586)
++|+||.+|+.. ............|..-.+.+++...+++.+-
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a 117 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQG 117 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCS
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 999999999987 3445556778899999999999988886543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.00073 Score=58.38 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCc---E---EEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKC---I---VRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~---~---V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.++||.|+||+|++|++++..|...+.. + ...+|..... ....................+...-.+ .+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM--KALEGVVMELEDCAFPLLAGLEATDDP----KV 76 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHTTTCTTEEEEEEESCH----HH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccch--hhHcCchhhhhccccccccccccCCch----hh
Confidence 3679999999999999999999987531 1 2332221100 000000000000112233344433222 46
Q ss_pred HhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhC-CC-CEEEEec
Q 007866 81 VLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACREC-KV-RRLVYNS 131 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~-gv-kr~I~~S 131 (586)
.++++|+||-+||.. .+..+.....+.|+.-.+.+.+...+. .- ..++.+|
T Consensus 77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 789999999999987 455567788899999999999999885 32 2454454
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00057 Score=58.03 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=73.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|.|+ |.+|+.++..|..++. .++.++|+.... .+.... .+. ..+ ........+|. +.++++
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~--~~g~~~-Dl~~~~~~-~~~~~~~~~~~-------~~~~~a 68 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKR--AEGDAL-DLIHGTPF-TRRANIYAGDY-------ADLKGS 68 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHHH-HHHHHGGG-SCCCEEEECCG-------GGGTTC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeccccc--ccchhc-cccccccc-cccccccCCcH-------HHhcCC
Confidence 68999996 9999999998888763 479998876532 110000 000 001 12334444332 347899
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
|+|+-+|+.. ............|..-.+.+++...+.+.+-++.+
T Consensus 69 divvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv 114 (140)
T d1a5za1 69 DVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114 (140)
T ss_dssp SEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEE
Confidence 9999999986 34455677888899999999999998876545544
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.85 E-value=0.0013 Score=58.30 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|+||.|.|||||+|..|++.|.++.+.++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 68999999999999999999999976676653
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.84 E-value=0.00051 Score=59.38 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC------cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK------CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~------~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
+++||.|+||+|.+|++++-.|.+.+- .+++.+|............. .... ........+.+--. ..+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~----~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM-ELQD-CALPLLKDVIATDK----EEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHH-TCCTTEEEEEEESC----HHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh-hhcc-cccccccccccCcc----ccc
Confidence 468999999999999999999986532 24667665432100000000 0000 01122222222111 246
Q ss_pred HhcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhC-CCC-EEEEec
Q 007866 81 VLEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACREC-KVR-RLVYNS 131 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~-gvk-r~I~~S 131 (586)
.++++|+||-++|.. .+..+.....+.|..-.+.+.+...++ +-. .+|.+|
T Consensus 76 ~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 788999999999986 344445667889999999999888664 533 344444
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.78 E-value=0.00049 Score=58.76 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC--cEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK--CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~--~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
+|+|.|.|||||+|+.+++.|.+++| .++..+ ..+.+.+.. +....-+...-++. ...+.++
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~--------~s~~~~Gk~---i~~~~~~~~~~~~~-----~~~~~~~ 65 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL--------ASAESAGQR---MGFAESSLRVGDVD-----SFDFSSV 65 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE--------ECTTTTTCE---EEETTEEEECEEGG-----GCCGGGC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE--------eecccCCcc---eeeccccchhccch-----hhhhccc
Confidence 48999999999999999999976553 356552 222121111 11111122222221 1235678
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD 134 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~ 134 (586)
|+||.+++.. .+......+.+.|. ++|=.||..
T Consensus 66 d~vf~a~p~~---------------~s~~~~~~~~~~g~-~VID~Ss~f 98 (144)
T d2hjsa1 66 GLAFFAAAAE---------------VSRAHAERARAAGC-SVIDLSGAL 98 (144)
T ss_dssp SEEEECSCHH---------------HHHHHHHHHHHTTC-EEEETTCTT
T ss_pred eEEEecCCcc---------------hhhhhccccccCCc-eEEeechhh
Confidence 9998776331 13345556666775 677666653
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.71 E-value=0.00086 Score=58.87 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.|+|+|.|| |.+|+++++.|.++|| +|++.|+.. ++. .+.+ ..........+..+.....+.+...|
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~-~V~v~dr~~--------~~a~~l~~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 69 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI-KVTVACRTL--------ESAKKLSA--GVQHSTPISLDVNDDAALDAEVAKHD 69 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC-EEEEEESCH--------HHHHHHHT--TCTTEEEEECCTTCHHHHHHHHTTSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCh--------HHHHHHHh--cccccccccccccchhhhHhhhhccc
Confidence 589999976 9999999999999996 999966543 211 0111 11234555667777888888888899
Q ss_pred EEEEcc
Q 007866 87 TVFYVD 92 (586)
Q Consensus 87 ~Vih~a 92 (586)
.++.+.
T Consensus 70 ~~i~~~ 75 (182)
T d1e5qa1 70 LVISLI 75 (182)
T ss_dssp EEEECS
T ss_pred eeEeec
Confidence 998765
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.70 E-value=0.00048 Score=60.80 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|+||.|.|||||+|..|++.|.++.+.++..+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l 32 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYL 32 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEe
Confidence 57999999999999999999998887677663
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.68 E-value=0.0014 Score=55.57 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=73.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEE-ccCCCHHHHHHHhcC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQ-VDVRDISQIKKVLEG 84 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~-~Dl~d~~~l~~~l~~ 84 (586)
|||.|.|+ |.+|++++-.|..+|. .++.++|+..+. .+... -.+.+. .......... .|. +.+.+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~--~~g~a-lDl~~~~~~~~~~~~i~~~~d~-------~~~~~ 69 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL--AVGEA-MDLAHAAAGIDKYPKIVGGADY-------SLLKG 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH--HHHHH-HHHHHHHHTTTCCCEEEEESCG-------GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccch--hhHHH-HHHhhhccccCCCCccccCCCH-------HHhcc
Confidence 78999996 9999999999988773 479998876532 11000 000000 0111122222 232 35789
Q ss_pred CCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 85 ASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+|+||-.|+.. .+..+.......|..-.+.+.+...+.+-+-++.+-
T Consensus 70 adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivv 117 (142)
T d1ojua1 70 SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVV 117 (142)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEC
T ss_pred ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEe
Confidence 99999999976 345567788889999999999999998765444433
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.65 E-value=0.0017 Score=55.09 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=72.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.||.|+|+ |.+|++++-.|..+|. .++.++|+.... .+... ..+.+ .+. ........+ |. +.+.++
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~--~~g~a-~Dl~~a~~~~-~~~~i~~~~--~~----~~~~da 70 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKER--VEAEV-LDMQHGSSFY-PTVSIDGSD--DP----EICRDA 70 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH--HHHHH-HHHHHTGGGS-TTCEEEEES--CG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEecccc--chhHH-HHHHhccccC-CCceeecCC--CH----HHhhCC
Confidence 58999996 9999999999998874 479998876532 11000 00000 011 122333222 22 246789
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEE
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I 128 (586)
|+||-+||.. .+..+.....+.|..-.+.+++...+++-+-++
T Consensus 71 DvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ 114 (143)
T d1llda1 71 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIY 114 (143)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEE
Confidence 9999999987 345566788899999999999999988754443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.57 E-value=0.0013 Score=55.75 Aligned_cols=111 Identities=6% Similarity=0.041 Sum_probs=67.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEE-EccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYH-QVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~-~~Dl~d~~~l~~~l~~~ 85 (586)
+||.|+|+ |.+|..++-.|..++-.++.++|..... ..... ..+.+. +........ ..|. +.+.++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~--~~~~~-~Dl~~~~~~~~~~~~i~~~~d~-------~~~~~a 70 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGV--PQGKA-LDLYEASPIEGFDVRVTGTNNY-------ADTANS 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSH--HHHHH-HHHHTTHHHHTCCCCEEEESCG-------GGGTTC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeecccc--chhHH-HHhhccccccCCCCEEEecCcH-------HHhcCC
Confidence 68999996 9999999999988876689998775421 00000 000000 011122222 2232 246789
Q ss_pred CEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 86 STVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 86 D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
|+||-+||.. .+..+.....+.|..-.+.+++...+++.+-++.+
T Consensus 71 dvvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiviv 116 (142)
T d1uxja1 71 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 116 (142)
T ss_dssp SEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEE
T ss_pred CEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999976 34445567778899999999999998876544444
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0063 Score=50.36 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=51.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~-~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
|||.|.|++|-.|+.+.+.+.++|+ ++.+ .|... . +.++++|+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~--------~---------------------------~~~~~~DV 44 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNG--------V---------------------------EELDSPDV 44 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTE--------E---------------------------EECSCCSE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCc--------H---------------------------HHhccCCE
Confidence 6899999999999999999988996 5554 22110 0 11356899
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
||.+..+ .++.+.++.|.++++ .+|.-+|
T Consensus 45 vIDFS~p---------------~~~~~~l~~~~~~~~-p~ViGTT 73 (128)
T d1vm6a3 45 VIDFSSP---------------EALPKTVDLCKKYRA-GLVLGTT 73 (128)
T ss_dssp EEECSCG---------------GGHHHHHHHHHHHTC-EEEECCC
T ss_pred EEEecCH---------------HHHHHHHHHHHhcCC-CEEEEcC
Confidence 9998754 235668889999987 5654444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.27 E-value=0.0046 Score=52.73 Aligned_cols=113 Identities=8% Similarity=0.031 Sum_probs=72.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.+||.|.|+ |.+|++++..|...+-.++.++|+.... .+... ..+.+ .+...+......| + .+.+.++
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~--~~g~a-~Dl~~~~~~~~~~~~v~~~~--~----~~~~~~a 72 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNM--PHGKA-LDTSHTNVMAYSNCKVSGSN--T----YDDLAGA 72 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSH--HHHHH-HHHHTHHHHHTCCCCEEEEC--C----GGGGTTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCc--ceeee-cchhhhccccCCCcEEEecc--c----ccccCCC
Confidence 469999995 9999999988888876789998875421 00000 00000 0111122232222 2 2356789
Q ss_pred CEEEEcccCCCC------CCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 007866 86 STVFYVDATDLN------TDDFYNCYMIIVQGAKNVVTACRECKVRRLVYN 130 (586)
Q Consensus 86 D~Vih~aa~~~~------~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~ 130 (586)
|+|+-+++.... ..+.....+.|..-.+.+.+..++.+-+-++.+
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aiviv 123 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999999997521 123567789999999999999998876554433
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.26 E-value=0.00098 Score=59.22 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=28.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
|||.|+||+|.+|+.|++.|.+.|| +|.+.++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~-~V~l~~R 32 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH-EIVVGSR 32 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 7899999999999999999999996 9999433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.12 E-value=0.0061 Score=52.49 Aligned_cols=114 Identities=13% Similarity=0.022 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCC--CCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLP--DSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~--~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
+.+||.|.|+ |.+|+.++-.|..+|. .++.++|+.... .+... ..+. ..+.........+|. +.+.
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~--a~g~a-lDl~h~~~~~~~~~~~~~~d~-------~~~~ 87 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDK--LKGEM-MDLQHGSLFLQTPKIVADKDY-------SVTA 87 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHH-HHHHHTGGGCCCSEEEECSSG-------GGGT
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccch--hHHHH-HHHhccccccCCCeEEeccch-------hhcc
Confidence 4579999996 9999999999999884 479998876431 11000 0000 111111222222332 2478
Q ss_pred CCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Q 007866 84 GASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVRR-LVYNS 131 (586)
Q Consensus 84 ~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr-~I~~S 131 (586)
++|+|+..||.. .+..+.....+.|+.-.+.+++...+.+-+- ++.+|
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 899999999987 3445567788899999999999998887543 44444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.08 E-value=0.016 Score=48.98 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=69.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|||.|+|+ |++|+.++-.|+.+|. .++.++|+.... .+... ..+.+. ...........|. +.++++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~--~~g~~-~Dl~~a~~~~~~~~~~~~~d~-------~~l~~a 70 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAK--VKADQ-IDFQDAMANLEAHGNIVINDW-------AALADA 70 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH--HHHHH-HHHHHHGGGSSSCCEEEESCG-------GGGTTC
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccch--hhhHH-HhhhccccccCCccceeccCH-------HHhccc
Confidence 79999995 9999999999998873 479998876532 11000 001111 1112334444442 346899
Q ss_pred CEEEEcccCCC-----CCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 86 STVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 86 D~Vih~aa~~~-----~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
|+||-+||... +..+.....+.|..-.+.+.+..++.+.+-++.
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivi 119 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV 119 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 99999999642 112234567889999999999999887654443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.04 E-value=0.0029 Score=54.14 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++|.|.||.|.+|+.+++.|.++| ++|.++|+.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~ 42 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASG-YPISILDRE 42 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccc
Confidence 57899999999999999999999999 599996553
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0033 Score=54.31 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=28.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
|||+|.|+ |.+|+.++..|.+.|| +|.++++.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~-~V~~~~r~ 32 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH-EVQGWLRV 32 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC-ceEEEEcC
Confidence 79999988 9999999999999996 99995543
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.01 Score=54.11 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=51.3
Q ss_pred CCCCCeEEEEcC----------------CCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEE
Q 007866 5 EAIPRTCVVLNG----------------RGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68 (586)
Q Consensus 5 ~~~~~~IlVTGa----------------tG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~ 68 (586)
+..+++||||+| ||-.|.+|++++.++|+ +|+++ ...... ..+.++..+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li--------~g~~~~------~~p~~~~~~ 67 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLV--------SGPVSL------PTPPFVKRV 67 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEE--------ECSCCC------CCCTTEEEE
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhh--------hccccc------Ccccccccc
Confidence 456899999976 79999999999999996 88773 222210 112345555
Q ss_pred EccCCCHHH----HHHHhcCCCEEEEcccCC
Q 007866 69 QVDVRDISQ----IKKVLEGASTVFYVDATD 95 (586)
Q Consensus 69 ~~Dl~d~~~----l~~~l~~~D~Vih~aa~~ 95 (586)
.. .+.++ +.+.+.++|++|+.||..
T Consensus 68 ~~--~t~~~m~~~~~~~~~~~D~~i~aAAvs 96 (223)
T d1u7za_ 68 DV--MTALEMEAAVNASVQQQNIFIGCAAVA 96 (223)
T ss_dssp EC--CSHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred ee--hhhHHHHHHHHhhhccceeEeeeechh
Confidence 44 33333 344556899999999987
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0027 Score=54.80 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCcccccCCCCCCCCCCC--CCCCCCeEEEEccCCCHHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPD--SLSSGRAEYHQVDVRDISQIKKV 81 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~~~~l~r~~~~~~~~~--~l~~~~~~~~~~Dl~d~~~l~~~ 81 (586)
.+...||.|+|+ |.+|.+++-.|...|. .++.++|+.... .+... ..+.+ ............|. +.
T Consensus 16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~--a~g~a-lDl~~~~~~~~~~~~~~~~d~-------~~ 84 (159)
T d2ldxa1 16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDK--LRGEA-LDLQHGSLFLSTPKIVFGKDY-------NV 84 (159)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHH--HHHHH-HHHHHTTTTCSCCEEEEESSG-------GG
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchh--hhccH-HHHhCcchhcCCCeEEeccch-------hh
Confidence 345568999985 9999999999999874 479998876421 11000 00100 11111222233332 34
Q ss_pred hcCCCEEEEcccCC-CCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 82 LEGASTVFYVDATD-LNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 82 l~~~D~Vih~aa~~-~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
+.++|+||-+||.. .+..+.....+.|+.-.+.++....+++-+
T Consensus 85 ~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~ 129 (159)
T d2ldxa1 85 SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPD 129 (159)
T ss_dssp GTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTT
T ss_pred hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 67899999999986 333445566888999999998888877654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.021 Score=45.70 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
...||.|.| .|.+|+-++.+..+.| ++++++|.... .+. ..-.-+++.+|..|.+.+.+... +
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG-~~v~v~d~~~~-----~PA--------~~va~~~i~~~~~d~~~l~~~~~~~~ 74 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLG-VEVIAVDRYAD-----APA--------MHVAHRSHVINMLDGDALRRVVELEK 74 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTT-CEEEEEESSTT-----CGG--------GGGSSEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCC-CEEEEEcCCCC-----Cch--------hhcCCeEEECCCCCHHHHHHHHHhhC
Confidence 456899997 6999999999999999 59999665431 111 01124788899999999988774 6
Q ss_pred CCEEEE
Q 007866 85 ASTVFY 90 (586)
Q Consensus 85 ~D~Vih 90 (586)
+|+|-.
T Consensus 75 ~DviT~ 80 (111)
T d1kjqa2 75 PHYIVP 80 (111)
T ss_dssp CSEEEE
T ss_pred CceEEE
Confidence 899864
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0048 Score=53.36 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC---CCCCCCCC-CCeEEEEccCCCHHHHHHHh
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS---LLPDSLSS-GRAEYHQVDVRDISQIKKVL 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~---~~~~~l~~-~~~~~~~~Dl~d~~~l~~~l 82 (586)
..+||.|.|++|-.|+.+++.+.+.+..++.+. +.|..... ...+.... .....+.-|+ .+.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~-------~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~------~~~~ 69 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAA-------LEREGSSLLGSDAGELAGAGKTGVTVQSSL------DAVK 69 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCE-------ECCTTCTTCSCCTTCSSSSSCCSCCEESCS------TTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------EecccchhccchhhhhhccccCCceeeccH------HHHh
Confidence 357999999999999999999998765565431 22222110 01111111 1111223333 3456
Q ss_pred cCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Q 007866 83 EGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNST 132 (586)
Q Consensus 83 ~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS 132 (586)
+.+|+||.+.-+ .++...++.|.++|+ .+|.-+|
T Consensus 70 ~~~DViIDFs~p---------------~~~~~~~~~a~~~~~-~~ViGTT 103 (162)
T d1diha1 70 DDFDVFIDFTRP---------------EGTLNHLAFCRQHGK-GMVIGTT 103 (162)
T ss_dssp TSCSEEEECSCH---------------HHHHHHHHHHHHTTC-EEEECCC
T ss_pred cccceEEEeccH---------------HHHHHHHHHHHhccc-eeEEecC
Confidence 789999998633 345668889999997 4554443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.60 E-value=0.018 Score=49.08 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=23.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhcC--CcEEEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELG--KCIVRV 38 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g--~~~V~~ 38 (586)
||.|.|||||+|..|++.|.+++ ..++..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~ 33 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRY 33 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEE
Confidence 79999999999999999998885 234444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.52 E-value=0.0036 Score=54.79 Aligned_cols=74 Identities=22% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++.+|+|+||+|-+|...++.+...|. +|++.+. ++++......+ +.+.+ .|..+...-....+|+|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~--------~~~~~~~~~~l---Ga~~~-i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAAS--------RPEKLALPLAL---GAEEA-ATYAEVPERAKAWGGLD 93 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEES--------SGGGSHHHHHT---TCSEE-EEGGGHHHHHHHTTSEE
T ss_pred CCCEEEEEeccccchhhhhhhhccccc-ccccccc--------ccccccccccc---cccee-eehhhhhhhhhcccccc
Confidence 568999999999999999999999994 8888443 22211111111 22222 24444333233446799
Q ss_pred EEEEccc
Q 007866 87 TVFYVDA 93 (586)
Q Consensus 87 ~Vih~aa 93 (586)
+||++.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.044 Score=42.12 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|. |-.|.++++.|.++| .+|.+.|.... .... ..+ ........++.. . ..+.++
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g-~~v~~~D~~~~---~~~~------~~~-~~~~~~~~~~~~-~----~~~~~~ 65 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARG-VTPRVMDTRMT---PPGL------DKL-PEAVERHTGSLN-D----EWLMAA 65 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESSSS---CTTG------GGS-CTTSCEEESBCC-H----HHHHHC
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCC-CEEEEeeCCcC---chhH------HHH-hhccceeecccc-h----hhhccC
Confidence 35789999977 778999999999999 59999887542 1110 111 124455555542 2 235678
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
|.||---|.. .+++ ++..|++.|++
T Consensus 66 d~vi~SPGi~--~~~~-------------~~~~a~~~gi~ 90 (93)
T d2jfga1 66 DLIVASPGIA--LAHP-------------SLSAAADAGIE 90 (93)
T ss_dssp SEEEECTTSC--TTSH-------------HHHHHHHTTCE
T ss_pred CEEEECCCCC--CCCH-------------HHHHHHHcCCC
Confidence 9999877663 2222 67778888873
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.28 E-value=0.0062 Score=54.72 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=30.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|||.|. |.||+|..++..|.++|| +|.++|.+.
T Consensus 1 MkI~Vi-GlG~vGl~~a~~la~~g~-~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIF-GLGYVGAVCAGCLSARGH-EVIGVDVSS 33 (202)
T ss_dssp CEEEEE-CCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEE-CCCHhHHHHHHHHHhCCC-cEEEEeCCH
Confidence 789999 689999999999999995 999999865
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.28 E-value=0.041 Score=45.62 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=49.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEEE
Q 007866 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTVF 89 (586)
Q Consensus 10 ~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~Vi 89 (586)
||.|.|++|-.|+.+++.+.+....++.+. +++.. +.+. ....++|+||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~-------~d~~~----------------------~~~~--~~~~~~DvvI 49 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE-------LDAGD----------------------PLSL--LTDGNTEVVI 49 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEE-------ECTTC----------------------CTHH--HHTTTCSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEE-------EecCC----------------------chhh--hccccCCEEE
Confidence 689999999999999999888765676651 22110 0111 1124689999
Q ss_pred EcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 90 YVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 90 h~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
.+..+. ++...++.|.+.|++ +|.
T Consensus 50 DFS~p~---------------~~~~~~~~~~~~~~~-~Vi 73 (135)
T d1yl7a1 50 DFTHPD---------------VVMGNLEFLIDNGIH-AVV 73 (135)
T ss_dssp ECCCTT---------------THHHHHHHHHHTTCE-EEE
T ss_pred EcccHH---------------HHHHHHHHHHhcCCC-EEE
Confidence 987552 245678899999984 443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.00 E-value=0.0049 Score=54.36 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh--cC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL--EG 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l--~~ 84 (586)
++.+|||+||+|-+|...++.....| .+|++. .+++++......+. ....+..-|-...+.+.+.. +|
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~--------~~~~~~~~~~~~~G-a~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGA--------AGSDEKIAYLKQIG-FDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEE--------ESSHHHHHHHHHTT-CSEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccC-CEEEEe--------CCCHHHHHHHHhhh-hhhhcccccccHHHHHHHHhhcCC
Confidence 57899999999999999999999999 599984 44333211111111 11112223333345444444 35
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVV 136 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vy 136 (586)
+|+||++.|.. + ....++.++..| +++.++..+.|
T Consensus 99 vd~v~D~vG~~--------~-------~~~~~~~l~~~G--~~v~~G~~~~~ 133 (182)
T d1v3va2 99 YDCYFDNVGGE--------F-------LNTVLSQMKDFG--KIAICGAISVY 133 (182)
T ss_dssp EEEEEESSCHH--------H-------HHHHGGGEEEEE--EEEECCCGGGT
T ss_pred CceeEEecCch--------h-------hhhhhhhccCCC--eEEeecceeec
Confidence 99999987641 1 112333444444 67877766655
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.98 E-value=0.042 Score=42.63 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=59.4
Q ss_pred CCCCCCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 1 MPFDEAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
|-++....++|.+.|-.|--=+.|++.|.++| ++|.+.|...+... +.+...++.+..++-. +
T Consensus 1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G-~~VsGSD~~~~~~~----------~~L~~~Gi~v~~g~~~------~ 63 (96)
T d1p3da1 1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNEG-YQISGSDIADGVVT----------QRLAQAGAKIYIGHAE------E 63 (96)
T ss_dssp CCCCCTTCCEEEEETTTSTTHHHHHHHHHHHT-CEEEEEESCCSHHH----------HHHHHTTCEEEESCCG------G
T ss_pred CCccchhCCEEEEEEECHHHHHHHHHHHHhCC-CEEEEEeCCCChhh----------hHHHHCCCeEEECCcc------c
Confidence 43444567899999766654477899999999 59999887532101 1112235666554431 2
Q ss_pred HhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 81 VLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
.++++|.||.-.|.. +++++ +.+|++.|++
T Consensus 64 ~i~~~d~vV~S~AI~--~~npe-------------l~~A~~~gip 93 (96)
T d1p3da1 64 HIEGASVVVVSSAIK--DDNPE-------------LVTSKQKRIP 93 (96)
T ss_dssp GGTTCSEEEECTTSC--TTCHH-------------HHHHHHTTCC
T ss_pred cCCCCCEEEECCCcC--CCCHH-------------HHHHHHcCCC
Confidence 346789999988874 45553 4466777764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.69 E-value=0.023 Score=49.10 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
++.+|+|+| +|-+|...++.+...| .+|+++|...
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTARSP 60 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESCH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhc-ccccccchHH
Confidence 467899997 6999999999999999 4999966543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0057 Score=53.50 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
++.+|||+||+|-+|...++.+...| .+|++.+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~ 60 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYG-LKILGTA 60 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCEEEEEeccccccccccccccccC-ccccccc
Confidence 56799999999999999999999999 4888844
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.42 E-value=0.016 Score=51.09 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
+..||.|.|||||.|..|++.|.++.+.++..+
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l 36 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVM 36 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEE
Confidence 457999999999999999999999987677664
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.33 E-value=0.0089 Score=51.47 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCC-CCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNS-LLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~-~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
..+++|+|.|+ |-+|+.+++.|.+.|..++.+ ..|+.++. .+...+ +... .+.+++.+.+.+
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v--------~nRt~~ka~~l~~~~---~~~~-----~~~~~~~~~l~~ 84 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLV--------ANRTYERAVELARDL---GGEA-----VRFDELVDHLAR 84 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEE--------ECSSHHHHHHHHHHH---TCEE-----CCGGGHHHHHHT
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEE--------EcCcHHHHHHHHHhh---hccc-----ccchhHHHHhcc
Confidence 45789999987 999999999999999657888 45553321 011100 1222 234566778899
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||.+.+..
T Consensus 85 ~Divi~atss~ 95 (159)
T d1gpja2 85 SDVVVSATAAP 95 (159)
T ss_dssp CSEEEECCSSS
T ss_pred CCEEEEecCCC
Confidence 99999998765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.17 E-value=0.09 Score=41.88 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|| |-+|..-++.|++.|. +|++++... +. .........++++...+..+. .++++
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga-~v~v~~~~~--------~~-~~~~~~~~~~i~~~~~~~~~~-----dl~~~ 73 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGA-RLTVNALTF--------IP-QFTVWANEGMLTLVEGPFDET-----LLDSC 73 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTB-EEEEEESSC--------CH-HHHHHHTTTSCEEEESSCCGG-----GGTTC
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeccC--------Ch-HHHHHHhcCCceeeccCCCHH-----HhCCC
Confidence 46799999965 9999999999999995 888854322 11 111122334677777776542 36788
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+.|+-+.+. . +. ...+.+.|++.|+ +|.+.
T Consensus 74 ~lv~~at~d------~----~~----n~~i~~~a~~~~i--lVNv~ 103 (113)
T d1pjqa1 74 WLAIAATDD------D----TV----NQRVSDAAESRRI--FCNVV 103 (113)
T ss_dssp SEEEECCSC------H----HH----HHHHHHHHHHTTC--EEEET
T ss_pred cEEeecCCC------H----HH----HHHHHHHHHHcCC--EEEeC
Confidence 988865322 1 11 2357788888875 56644
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.04 E-value=0.031 Score=42.75 Aligned_cols=86 Identities=12% Similarity=-0.017 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAST 87 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~ 87 (586)
.|||-++|-.|-==+.|++.|.++| +.|.+.|+..+... +.+...++++..+. +.+ .++++|.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G-~~VsGSD~~~~~~t----------~~L~~~Gi~i~~gh--~~~----~i~~~d~ 63 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNG-NDVYGSNIEETERT----------AYLRKLGIPIFVPH--SAD----NWYDPDL 63 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSSCCHHH----------HHHHHTTCCEESSC--CTT----SCCCCSE
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCC-CeEEEEeCCCChhH----------HHHHHCCCeEEeee--ccc----ccCCCCE
Confidence 3789999876655567899999999 59999886542111 12333456555442 222 2467899
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCC
Q 007866 88 VFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125 (586)
Q Consensus 88 Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvk 125 (586)
||.-.|.. .++|+ +++|++.|++
T Consensus 64 vV~SsAI~--~~npe-------------l~~A~~~gIp 86 (89)
T d1j6ua1 64 VIKTPAVR--DDNPE-------------IVRARMERVP 86 (89)
T ss_dssp EEECTTCC--TTCHH-------------HHHHHHTTCC
T ss_pred EEEecCcC--CCCHH-------------HHHHHHcCCC
Confidence 99988884 45553 5677888774
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.027 Score=49.45 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCC----CCCCC-CCCCeEEEEccCCCHHHHHH
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL----LPDSL-SSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~----~~~~l-~~~~~~~~~~Dl~d~~~l~~ 80 (586)
..+++|+|.|+ |..|+.++..|.+.|..+++++++. ++... +.+.+ ..........|+.+.+.+.+
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRR--------DEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECS--------STTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccc--------hHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 35689999977 7889999999999997688885543 22110 00000 11234456778888888888
Q ss_pred HhcCCCEEEEcccCC
Q 007866 81 VLEGASTVFYVDATD 95 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~ 95 (586)
.+..+|.||++....
T Consensus 87 ~~~~~diiIN~Tp~G 101 (182)
T d1vi2a1 87 ALASADILTNGTKVG 101 (182)
T ss_dssp HHHTCSEEEECSSTT
T ss_pred hhcccceeccccCCc
Confidence 888899999987653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.64 E-value=0.012 Score=51.63 Aligned_cols=75 Identities=23% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHh-
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVL- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l- 82 (586)
++.+|||+||+|-+|...++.+...| .+|.+.+ +++++... +...+...+ .|..+. +++.+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~--------~~~~~~~~---l~~~Ga~~v-i~~~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTA--------GSDAKREM---LSRLGVEYV-GDSRSVDFADEILELTD 91 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEE--------SSHHHHHH---HHTTCCSEE-EETTCSTHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcccccchhhcccc-ccceeee--------cccccccc---ccccccccc-ccCCccCHHHHHHHHhC
Confidence 46799999999999999999999999 4877733 33221111 111222222 244443 4444444
Q ss_pred -cCCCEEEEcccC
Q 007866 83 -EGASTVFYVDAT 94 (586)
Q Consensus 83 -~~~D~Vih~aa~ 94 (586)
+|+|+||++.+.
T Consensus 92 ~~g~d~v~d~~g~ 104 (183)
T d1pqwa_ 92 GYGVDVVLNSLAG 104 (183)
T ss_dssp TCCEEEEEECCCT
T ss_pred CCCEEEEEecccc
Confidence 359999998863
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.021 Score=42.42 Aligned_cols=31 Identities=32% Similarity=0.280 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
++.+|+|+||+|-+|...++.+...| .+|++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~ 61 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLG-YQVVA 61 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTT-CCEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEE
Confidence 46789999999999999999999999 58888
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.029 Score=47.56 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=53.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
.+|+|.|. |-+|+.+++.|.+.| ++|+++|........+ .......++.++.||..|++.+.++ ++.+|+
T Consensus 4 nHiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~-------~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~ 74 (153)
T d1id1a_ 4 DHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQ-------LEQRLGDNADVIPGDSNDSSVLKKAGIDRCRA 74 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHH-------HHHHHCTTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHH-------HHHhhcCCcEEEEccCcchHHHHHhccccCCE
Confidence 36888876 899999999999999 4888866543100000 0111234789999999999988765 477999
Q ss_pred EEEcc
Q 007866 88 VFYVD 92 (586)
Q Consensus 88 Vih~a 92 (586)
||-+.
T Consensus 75 vi~~~ 79 (153)
T d1id1a_ 75 ILALS 79 (153)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99765
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.32 E-value=0.018 Score=50.29 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
.|||.|.|+ |.+|..++..|.++|| +|.++|+..
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~-~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQ-SVLAWDIDA 34 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 379999977 9999999999999995 999977653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.92 E-value=0.048 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|||.|.|. |.+|+.+++.|.++|+ +|.++|+..
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~-~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGH-YLIGVSRQQ 33 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 68999955 9999999999999995 999976653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.58 E-value=0.016 Score=50.72 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH-HHHHHHh--cC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI-SQIKKVL--EG 84 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~-~~l~~~l--~~ 84 (586)
+.+|||+||+|-+|...++.....|. +|++ ..+++++..+...+... ..+ |..+. ++..+.. ++
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga-~Via--------t~~s~~k~~~~~~lGa~--~vi--~~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGY-TVEA--------STGKAAEHDYLRVLGAK--EVL--AREDVMAERIRPLDKQR 98 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTC-CEEE--------EESCTTCHHHHHHTTCS--EEE--ECC---------CCSCC
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCC-ceEE--------ecCchHHHHHHHhcccc--eee--ecchhHHHHHHHhhccC
Confidence 56899999999999999999999994 8888 45544432222222111 111 22221 1122222 35
Q ss_pred CCEEEEcccCC
Q 007866 85 ASTVFYVDATD 95 (586)
Q Consensus 85 ~D~Vih~aa~~ 95 (586)
+|+||++.+..
T Consensus 99 vD~vid~vgg~ 109 (176)
T d1xa0a2 99 WAAAVDPVGGR 109 (176)
T ss_dssp EEEEEECSTTT
T ss_pred cCEEEEcCCch
Confidence 89999988753
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.014 Score=50.86 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCH---HHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDI---SQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~---~~l~~~l~ 83 (586)
++.+|+|+||+|-+|...++.....| .+|++.+. ++++..+...+ +... ..|.++. +.+.++-.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~--------s~~k~~~~~~l---Ga~~-vi~~~~~d~~~~v~~~t~ 94 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVG--------TAQKAQSALKA---GAWQ-VINYREEDLVERLKEITG 94 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEES--------SHHHHHHHHHH---TCSE-EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEEccccccchHHHHHHHHhC-CeEeeccc--------chHHHHHHHhc---CCeE-EEECCCCCHHHHHHHHhC
Confidence 46799999999999999999999999 48998444 33321111111 2222 2355543 33444333
Q ss_pred --CCCEEEEcccC
Q 007866 84 --GASTVFYVDAT 94 (586)
Q Consensus 84 --~~D~Vih~aa~ 94 (586)
++|+|+.+.+.
T Consensus 95 g~g~d~v~d~~g~ 107 (179)
T d1qora2 95 GKKVRVVYDSVGR 107 (179)
T ss_dssp TCCEEEEEECSCG
T ss_pred CCCeEEEEeCccH
Confidence 47999998864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.065 Score=47.29 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
++-++|.|.|| |.+|+.++..++..| ++|+++|..+
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTE 37 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECCh
Confidence 35589999987 999999999999999 5999988765
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=92.11 E-value=0.15 Score=43.76 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
+.+||.|.| +|++|+..++.|.+....++++
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elva 32 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVG 32 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEE
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEE
Confidence 347899997 6999999999999876567665
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.05 E-value=0.034 Score=47.90 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
.++.+|+|.|+ |-+|...++.+...|. ++++.|... ++..+...+ +... ..|..+.+......+++
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~--------~~~~~a~~l---Gad~-~i~~~~~~~~~~~~~~~ 94 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSE--------AKREAAKAL---GADE-VVNSRNADEMAAHLKSF 94 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSG--------GGHHHHHHH---TCSE-EEETTCHHHHHTTTTCE
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccc-cchhhccch--------hHHHHHhcc---CCcE-EEECchhhHHHHhcCCC
Confidence 35789999986 8899999999999995 666755433 211111111 1222 24666766666666789
Q ss_pred CEEEEcccC
Q 007866 86 STVFYVDAT 94 (586)
Q Consensus 86 D~Vih~aa~ 94 (586)
|+||.+.+.
T Consensus 95 D~vid~~g~ 103 (168)
T d1uufa2 95 DFILNTVAA 103 (168)
T ss_dssp EEEEECCSS
T ss_pred ceeeeeeec
Confidence 999999875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.81 E-value=0.029 Score=48.41 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
++.+|+|.|+ |-+|...++.+...| .+|+++|..+ ++-.....+ +...+.-...+.+...+..+++|
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~--------~k~~~a~~l---Ga~~~i~~~~~~~~~~~~~~~~d 93 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSS--------RKREDAMKM---GADHYIATLEEGDWGEKYFDTFD 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSS--------TTHHHHHHH---TCSEEEEGGGTSCHHHHSCSCEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhcc-ccccccccch--------hHHHHhhcc---CCcEEeeccchHHHHHhhhcccc
Confidence 5689999986 999999999988899 4898865543 211111111 12222111122233445556789
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
+|+.+.+..
T Consensus 94 ~vi~~~~~~ 102 (168)
T d1piwa2 94 LIVVCASSL 102 (168)
T ss_dssp EEEECCSCS
T ss_pred eEEEEecCC
Confidence 999987654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=91.52 E-value=0.14 Score=44.87 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc----ccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHH
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL----QLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~----~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.+.|+||.|.| +|.-|++++..|.+.|| +|++.++++.. +-.|. ....+.....+.++.. .. .+.+
T Consensus 4 ~~~m~KI~ViG-aG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~-n~~yl~~~~l~~~i~~-t~------~l~~ 73 (189)
T d1n1ea2 4 LLYLNKAVVFG-SGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRE-NVLFLKGVQLASNITF-TS------DVEK 73 (189)
T ss_dssp CCCEEEEEEEC-CSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTB-CTTTSTTCBCCTTEEE-ES------CHHH
T ss_pred cceeceEEEEC-CCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhccc-cccccccccccccccc-ch------hhhh
Confidence 34567899995 59999999999999996 99996544321 00010 0001111111223332 22 3467
Q ss_pred HhcCCCEEEEcc
Q 007866 81 VLEGASTVFYVD 92 (586)
Q Consensus 81 ~l~~~D~Vih~a 92 (586)
+++++|.||-+.
T Consensus 74 a~~~ad~iiiav 85 (189)
T d1n1ea2 74 AYNGAEIILFVI 85 (189)
T ss_dssp HHTTCSCEEECS
T ss_pred ccCCCCEEEEcC
Confidence 789999998754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.74 E-value=0.13 Score=44.07 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCC-cEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~-~~V~~~d~~~ 43 (586)
|++|+|.| .|.+|..+++.|.+.|. .+|+++|...
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 57899996 69999999999999984 3789966643
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.63 E-value=0.11 Score=45.08 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=26.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|-||.|-| .|.||+.++|.|.+++..+|+++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaI 31 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGV 31 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEE
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEE
Confidence 45899997 89999999999999876677764
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.49 Score=40.38 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccC--CCHHHHHHHh
Q 007866 5 EAIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDV--RDISQIKKVL 82 (586)
Q Consensus 5 ~~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl--~d~~~l~~~l 82 (586)
+..+|+|+|.|-+.-+|+.++..|+++| .+|+.++........+..+- ... .....|+ ...+.+.+..
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDVNNIQKFTRGESL-----KLN----KHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECSSEEEEEESCCCS-----SCC----CCEEEEEEECCHHHHHHHH
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCC-CEEEEeccccccccccccce-----eee----eeccccccccchhHHhhcc
Confidence 4568999999999999999999999999 49988665532212222110 000 1112222 3466678888
Q ss_pred cCCCEEEEcccCC
Q 007866 83 EGASTVFYVDATD 95 (586)
Q Consensus 83 ~~~D~Vih~aa~~ 95 (586)
..+|+||..+|..
T Consensus 96 ~~aDIvIsavG~p 108 (171)
T d1edza1 96 LDSDVVITGVPSE 108 (171)
T ss_dssp HHCSEEEECCCCT
T ss_pred ccCCEEEEccCCC
Confidence 8899999988765
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.50 E-value=0.09 Score=45.75 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=44.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
|+|.|.|| |..|..++..|.+.|| +|.+..+.......+.-........+ .......++.-.+.+.++++++|.|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRL---GVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTT---TBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhh---cchhccccccccccHHHHHhccchh
Confidence 78999965 9999999999999996 99985332110000000000000000 0111111222244567889999999
Q ss_pred EEcc
Q 007866 89 FYVD 92 (586)
Q Consensus 89 ih~a 92 (586)
|.+.
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 8854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.38 E-value=0.043 Score=47.23 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
++.+|+|.|++|-+|...++.+...|..+|++.|..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~ 62 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR 62 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence 467999999999999999999999985588885544
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=1.5 Score=39.41 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCCC--------C--CCCCeEEEEccC-
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPDS--------L--SSGRAEYHQVDV- 72 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~~~--------l--~~~~~~~~~~Dl- 72 (586)
..+|+|.| .|-+|++++..|...|.-+++++|.+. ..++.|+.- ....... + ..+.+.....+.
T Consensus 30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~ 108 (247)
T d1jw9b_ 30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 108 (247)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence 46899997 688999999999999977899988664 334555421 0001000 0 123344433332
Q ss_pred CCHHHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Q 007866 73 RDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVF 137 (586)
Q Consensus 73 ~d~~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg 137 (586)
.+.+.....+.+.|+|+.+... . .....+-++|.+.++ .+|+.+....+|
T Consensus 109 ~~~~~~~~~~~~~divid~~d~------~--------~~~~~in~~~~~~~i-p~i~g~~~~~~g 158 (247)
T d1jw9b_ 109 LDDAELAALIAEHDLVLDCTDN------V--------AVRNQLNAGCFAAKV-PLVSGAAIRMEG 158 (247)
T ss_dssp CCHHHHHHHHHTSSEEEECCSS------H--------HHHHHHHHHHHHHTC-CEEEEEEEBTEE
T ss_pred hhhccccccccccceeeeccch------h--------hhhhhHHHHHHHhCC-Cccccccccccc
Confidence 2345566777889999986522 2 223345567888887 577776665554
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.36 E-value=0.2 Score=40.83 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc
Q 007866 7 IPRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~ 83 (586)
.+++|.|.||| |..|..+.+.|.+.|..+|+.+ .+... .. .+ ....-++.|.+ +
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV--------nP~~~--~i------~G-~~~y~sl~dlp------~ 63 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV--------NIKEE--EV------QG-VKAYKSVKDIP------D 63 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE--------CSSCS--EE------TT-EECBSSTTSCS------S
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe--------ccCcc--cc------CC-eEeecchhhcC------C
Confidence 46899999998 8999999999987664588883 32211 00 01 12233444422 4
Q ss_pred CCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc
Q 007866 84 GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTA 133 (586)
Q Consensus 84 ~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~ 133 (586)
.+|.++-+... ..+..+++.|.+.|++.++..|+.
T Consensus 64 ~vDlvvi~vp~---------------~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 64 EIDLAIIVVPK---------------RFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp CCSEEEECSCH---------------HHHHHHHHHHHHHTCCEEEECCCS
T ss_pred CCceEEEecCh---------------HHhHHHHHHHHHcCCCEEEEeccc
Confidence 57888865422 224457888889999988888775
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.29 E-value=0.1 Score=44.98 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
.+||.|-| .|-||+.+++.+.+++..++.+
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVa 31 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIG 31 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEE
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEE
Confidence 57999996 6999999999999877556555
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.01 E-value=0.069 Score=46.49 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
++.+|+|+|+ |-+|...++.+...|..+|++.|..+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccc
Confidence 5689999986 89999999999999954788866543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.89 E-value=0.081 Score=43.19 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=48.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHH-hcCCCE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKV-LEGAST 87 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~-l~~~D~ 87 (586)
|.|+|.| -|-+|+.+++.|.+. .|.++|..+. . .+.+...++.++.||..|++.+.++ ++.++.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~~~---~i~vi~~d~~--------~---~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~ 65 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELRGS---EVFVLAEDEN--------V---RKKVLRSGANFVHGDPTRVSDLEKANVRGARA 65 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSCGG---GEEEEESCTT--------H---HHHHHHTTCEEEESCTTSHHHHHHTTCTTCSE
T ss_pred CEEEEEC-CCHHHHHHHHHHcCC---CCEEEEcchH--------H---HHHHHhcCccccccccCCHHHHHHhhhhcCcE
Confidence 4688886 488999999998533 4666554331 1 0111234789999999999988875 467899
Q ss_pred EEEcc
Q 007866 88 VFYVD 92 (586)
Q Consensus 88 Vih~a 92 (586)
||-+.
T Consensus 66 vi~~~ 70 (129)
T d2fy8a1 66 VIVNL 70 (129)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 98654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.17 Score=43.31 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHh----
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVL---- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l---- 82 (586)
++.+|+|.|+ |-+|...++.+...|..+|++.|.... +-.+.+.+ .--..+..+-.+.....+.+
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~--------rl~~a~~~--Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT--------RLSKAKEI--GADLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH--------HHHHHHHT--TCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH--------HHHHHHHh--CCcccccccccccccccccccccC
Confidence 4678999976 999999999999999657999666542 11111111 11133334444555444443
Q ss_pred -cCCCEEEEcccC
Q 007866 83 -EGASTVFYVDAT 94 (586)
Q Consensus 83 -~~~D~Vih~aa~ 94 (586)
.++|+||.+.+.
T Consensus 95 g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 95 GCKPEVTIECTGA 107 (171)
T ss_dssp TSCCSEEEECSCC
T ss_pred CCCceEEEeccCC
Confidence 268999999876
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.66 E-value=0.09 Score=44.28 Aligned_cols=31 Identities=26% Similarity=0.195 Sum_probs=26.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
|||.|. |.|.+|+.+++.|+++|+ +|.+.|.
T Consensus 1 MkIgiI-G~G~mG~~ia~~l~~~g~-~v~~~~~ 31 (152)
T d1i36a2 1 LRVGFI-GFGEVAQTLASRLRSRGV-EVVTSLE 31 (152)
T ss_dssp CEEEEE-SCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred CEEEEE-cHHHHHHHHHHHHHHCCC-eEEEEcC
Confidence 689999 569999999999999995 8888443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.65 E-value=0.18 Score=42.80 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|++|.+. |.|.+|+.+++.|+++| ++|.++|+..
T Consensus 1 M~kIg~I-GlG~MG~~iA~~L~~~g-~~v~~~d~~~ 34 (162)
T d3cuma2 1 MKQIAFI-GLGHMGAPMATNLLKAG-YLLNVFDLVQ 34 (162)
T ss_dssp CCEEEEE-CCSTTHHHHHHHHHHTT-CEEEEECSSH
T ss_pred CCEEEEE-EEHHHHHHHHHHHHHCC-CeEEEEECch
Confidence 5789999 67999999999999999 5999977653
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.59 E-value=0.045 Score=48.07 Aligned_cols=31 Identities=26% Similarity=0.022 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
..+|||+||+|-+|+..++.....|...|.+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~ 61 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVG 61 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceec
Confidence 3689999999999999999999899645665
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.28 E-value=0.34 Score=41.94 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=45.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|.|.| .|-||+.+++.|..-| .+|.++|... ..... .. .+++++++..+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d~~~--------~~~~~---------~~-------~~~l~ell~~s 93 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAALG-AQVRGFSRTP--------KEGPW---------RF-------TNSLEEALREA 93 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHTT-CEEEEECSSC--------CCSSS---------CC-------BSCSHHHHTTC
T ss_pred ccCceEEEec-cccccccceeeeeccc-cccccccccc--------cccce---------ee-------eechhhhhhcc
Confidence 4578999995 6999999999999999 4999965432 11100 00 11356889999
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+|+-+....
T Consensus 94 Div~~~~pl~ 103 (181)
T d1qp8a1 94 RAAVCALPLN 103 (181)
T ss_dssp SEEEECCCCS
T ss_pred chhhcccccc
Confidence 9998876554
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.08 E-value=0.66 Score=45.84 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc--ccccCCCCC--CCCCCC------------CCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ--SLQLDPSES--NSLLPD------------SLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~--~~~l~r~~~--~~~~~~------------~l~~~~~~~~~~D 71 (586)
..||||.|+ |-+|.++++.|...|.-++.++|.+. ..++.|+-- ...... ....-++..+..+
T Consensus 37 ~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 115 (426)
T d1yovb1 37 TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK 115 (426)
T ss_dssp HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence 468999988 55999999999999966799988765 223444311 000000 0122345666666
Q ss_pred CCCHHHHHHHhcCCCEEEEcc
Q 007866 72 VRDISQIKKVLEGASTVFYVD 92 (586)
Q Consensus 72 l~d~~~l~~~l~~~D~Vih~a 92 (586)
+.+.. .+.++++|+||.+.
T Consensus 116 i~~~~--~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 116 IQDFN--DTFYRQFHIIVCGL 134 (426)
T ss_dssp GGGBC--HHHHTTCSEEEECC
T ss_pred ccchH--HHHHHhcchheecc
Confidence 65543 46788999999865
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.43 E-value=0.2 Score=43.85 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=27.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQS 44 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~ 44 (586)
|||.|.| .||+|..++..| ++|+ +|+++|.+..
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~-~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQN-EVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTS-EEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCC-cEEEEECCHH
Confidence 7899995 899999998755 6795 9999998764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.35 E-value=0.15 Score=43.66 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.++.+|+|.|+ |-+|...++.+...|..+|++.|.
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~ 61 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDI 61 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcc
Confidence 35679999987 568999999999999657888444
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=88.19 E-value=0.32 Score=39.04 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
..++|+|.| .|++|-.++..|.++|. +|++++..
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~-~Vtli~~~ 62 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAGV-HVSLVETQ 62 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred cCCeEEEEC-cchhHHHHHHHhhcccc-eEEEEeec
Confidence 357898885 59999999999999994 99995544
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.49 Score=40.11 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+|+|+|.|.+..+|+.++..|.++|. +|+.++.. .. + +.+....+
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~--------t~---------------------~---l~~~~~~A 81 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF--------TK---------------------N---LRHHVENA 81 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS--------CS---------------------C---HHHHHHHC
T ss_pred cccceEEEEeccccccHHHHHHHHHhhc-cccccccc--------cc---------------------h---hHHHHhhh
Confidence 4689999999999999999999999994 88884321 10 1 24455678
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||..+|..
T Consensus 82 DivI~a~G~p 91 (166)
T d1b0aa1 82 DLLIVAVGKP 91 (166)
T ss_dssp SEEEECSCCT
T ss_pred hHhhhhccCc
Confidence 9999999875
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.55 E-value=0.37 Score=38.21 Aligned_cols=33 Identities=27% Similarity=0.631 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.|| |++|-.++..|.+.|. +|++++.
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~-~Vtlve~ 53 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANFGT-KVTILEG 53 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEEES
T ss_pred cCCeEEEECC-Cccceeeeeeeccccc-EEEEEEe
Confidence 4589999965 9999999999999994 9999544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.51 E-value=0.23 Score=42.78 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCC--CHHHHHHHh--
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVR--DISQIKKVL-- 82 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~--d~~~l~~~l-- 82 (586)
.+.+|+|.| .|-+|...++.+...|..+|++.|..+ .+..+.+.+. -...+...-. ......+..
T Consensus 28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~--------~r~~~a~~~G--a~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDING--------EKFPKAKALG--ATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCG--------GGHHHHHHTT--CSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccch--------HHHHHHHHhC--CCcccCCccchhhhhhhHhhhhc
Confidence 467999997 599999999999999966788865543 2211222221 1122222111 223333333
Q ss_pred cCCCEEEEcccC
Q 007866 83 EGASTVFYVDAT 94 (586)
Q Consensus 83 ~~~D~Vih~aa~ 94 (586)
.|+|+||.++|.
T Consensus 97 ~G~d~vie~~G~ 108 (174)
T d1e3ia2 97 GGVDYSLDCAGT 108 (174)
T ss_dssp SCBSEEEESSCC
T ss_pred CCCcEEEEeccc
Confidence 469999999876
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=87.46 E-value=0.18 Score=43.94 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
+-++|.|.|| |.+|+.++..++..| ++|+++|...
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINE 37 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 3578999987 999999999999999 5999988765
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.39 E-value=0.29 Score=40.97 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=28.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
|||.+.|+ |.+|+++++.|++.|.++|.+.|+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~ 33 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRG 33 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 68999965 9999999999999886699995554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.04 E-value=0.37 Score=38.20 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++|+|.| .|++|-.++..|.+.|. +|+++++
T Consensus 20 ~p~~vvIiG-gG~ig~E~A~~l~~~G~-~Vtlve~ 52 (116)
T d1gesa2 20 LPERVAVVG-AGYIGVELGGVINGLGA-KTHLFEM 52 (116)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred CCCEEEEEC-CChhhHHHHHHhhcccc-EEEEEee
Confidence 357899985 59999999999999995 9999444
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=86.96 E-value=0.3 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|||-|. |.|.+|+.+++.|+++| ++|+++|+.+
T Consensus 1 MkIgiI-GlG~MG~~~A~~L~~~G-~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFI-GLGIMGKPMSKNLLKAG-YSLVVSDRNP 33 (161)
T ss_dssp CEEEEE-CCSTTHHHHHHHHHHTT-CEEEEECSCH
T ss_pred CEEEEE-ehhHHHHHHHHHHHHCC-CeEEEEeCCc
Confidence 689999 56999999999999999 5999966543
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=86.76 E-value=0.28 Score=41.04 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=27.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC-CcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~~ 39 (586)
|++|.|.|+||.||...++-+.+.. .++|.++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~L 33 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVAL 33 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEE
Confidence 5789999999999999999988864 4677773
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.60 E-value=0.31 Score=41.74 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEE-EccCCC-HHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH-QVDVRD-ISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~-~~Dl~d-~~~l~~~l- 82 (586)
.++.+|+|.|+ |-+|...+..+...|..+|++.|.. +++..+...+. ....+ ..|-.| .+...+..
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~--------~~k~~~a~~~G--a~~~i~~~~~~~~~~~~~~~~~ 95 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDIN--------KDKFAKAKEVG--ATECVNPQDYKKPIQEVLTEMS 95 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC--------GGGHHHHHHTT--CSEEECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCc--------HHHHHHHHHhC--CeeEEecCCchhHHHHHHHHHh
Confidence 35679999999 5599999999999986689995544 33221111111 11222 123222 33333333
Q ss_pred -cCCCEEEEcccC
Q 007866 83 -EGASTVFYVDAT 94 (586)
Q Consensus 83 -~~~D~Vih~aa~ 94 (586)
.|+|+||.+.+.
T Consensus 96 ~~G~D~vid~~G~ 108 (176)
T d2jhfa2 96 NGGVDFSFEVIGR 108 (176)
T ss_dssp TSCBSEEEECSCC
T ss_pred cCCCCEEEecCCc
Confidence 369999999876
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.57 E-value=0.68 Score=38.05 Aligned_cols=85 Identities=12% Similarity=0.032 Sum_probs=53.9
Q ss_pred CCeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcC
Q 007866 8 PRTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEG 84 (586)
Q Consensus 8 ~~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~ 84 (586)
.++|.|.|++ |-.|..+++.|.+.| ++|+.+ .+... .. . + ....-++. ++-+.
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pV--------nP~~~--~i---~---G-~~~~~sl~------dlp~~ 74 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPV--------NPKYE--EV---L---G-RKCYPSVL------DIPDK 74 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEE--------CTTCS--EE---T---T-EECBSSGG------GCSSC
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEE--------CCccc--cc---C---C-Cccccccc------ccCcc
Confidence 5799999998 789999999999999 588883 32211 00 0 1 11222332 22245
Q ss_pred CCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEec
Q 007866 85 ASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNS 131 (586)
Q Consensus 85 ~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~S 131 (586)
+|.|+-+... .....+++.|.+.|++.+++-+
T Consensus 75 iD~v~i~vp~---------------~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 75 IEVVDLFVKP---------------KLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp CSEEEECSCH---------------HHHHHHHHHHHHHTCSEEEECT
T ss_pred ceEEEEEeCH---------------HHHHHHHHHHHHhCCCEEEEec
Confidence 7887766422 2345578888888998766533
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.49 E-value=0.48 Score=37.99 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
..++|+|.| .|++|-.++..|.+.|. +|++++..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~-~Vtlie~~ 62 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGK-KVTVIDIL 62 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccce-EEEEEEec
Confidence 467999985 59999999999999995 99995443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.36 E-value=0.46 Score=38.08 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.|| |+||-.++..|.+.|. +|++++.
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~-~Vtii~~ 54 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRLGS-KVTVVEF 54 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECS
T ss_pred CCCeEEEECC-CchHHHHHHHHHhhCc-ceeEEEe
Confidence 4589999965 9999999999999995 9999444
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=1 Score=38.20 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
..+++|+|.|.+..+|+.++..|.++|. +|+.++.. .. .+.+...++
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~--------t~------------------------~l~~~~~~a 83 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK--------TA------------------------HLDEEVNKG 83 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT--------CS------------------------SHHHHHTTC
T ss_pred cccceEEEEecCCccchHHHHHHHhccC-ceEEEecc--------cc------------------------cHHHHHhhc
Confidence 4689999999999999999999999994 88884332 11 123456778
Q ss_pred CEEEEcccCC
Q 007866 86 STVFYVDATD 95 (586)
Q Consensus 86 D~Vih~aa~~ 95 (586)
|+||..+|..
T Consensus 84 Divi~a~G~~ 93 (170)
T d1a4ia1 84 DILVVATGQP 93 (170)
T ss_dssp SEEEECCCCT
T ss_pred cchhhccccc
Confidence 9999888875
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.07 E-value=0.93 Score=35.88 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=51.5
Q ss_pred CeEEEEcCC---CchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCC
Q 007866 9 RTCVVLNGR---GFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGA 85 (586)
Q Consensus 9 ~~IlVTGat---G~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~ 85 (586)
|+|.|.|++ |-.|..+++.|++.| |+|+.+ .+..+ .. .+... .-++.| +=+.+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pV--------nP~~~--~i------~G~~~-y~sl~~------lp~~~ 57 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPV--------NPNYD--EI------EGLKC-YRSVRE------LPKDV 57 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEE--------CTTCS--EE------TTEEC-BSSGGG------SCTTC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEE--------ccccc--cc------cCccc-cccchh------ccccc
Confidence 689999988 679999999999999 588883 32211 00 01111 122222 22457
Q ss_pred CEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Q 007866 86 STVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVY 129 (586)
Q Consensus 86 D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~ 129 (586)
|.++-+... ..+..+++.|.+.|++.+++
T Consensus 58 D~vvi~vp~---------------~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 58 DVIVFVVPP---------------KVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp CEEEECSCH---------------HHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCH---------------HHHHHHHHHHHhcCCceEEe
Confidence 888765422 22445788888899987654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=86.02 E-value=0.42 Score=38.03 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
+++|+|.|| |++|-.++..|.+.|. +|+++++
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~-~Vtlv~~ 53 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGI-DSYIFAR 53 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTC-EEEEECS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccc-cceeeeh
Confidence 689999965 9999999999999994 9999544
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=85.50 E-value=0.7 Score=39.41 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
|++|.|-| .|-||+.+++.|.+++.-+|.+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaI 31 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGV 31 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEE
Confidence 57899985 89999999999998886566653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.31 E-value=0.16 Score=43.83 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC---HHHHHHHhc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD---ISQIKKVLE 83 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d---~~~l~~~l~ 83 (586)
++.+|+|.|+ |-+|...++.+...|..+|++.|..+ .+..+...+. -...+ |..+ .+.+.+...
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~--------~r~~~a~~lG--a~~~i--~~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP--------ICVEAAKFYG--ATDIL--NYKNGHIEDQVMKLTN 93 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH--------HHHHHHHHHT--CSEEE--CGGGSCHHHHHHHHTT
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh--------hhHHHHHhhC--ccccc--cccchhHHHHHHHHhh
Confidence 4678999975 99999999999999965799966543 2111111111 01222 3222 344555553
Q ss_pred --CCCEEEEcccCC
Q 007866 84 --GASTVFYVDATD 95 (586)
Q Consensus 84 --~~D~Vih~aa~~ 95 (586)
|+|+||.+++..
T Consensus 94 g~G~D~vid~~g~~ 107 (174)
T d1jqba2 94 GKGVDRVIMAGGGS 107 (174)
T ss_dssp TSCEEEEEECSSCT
T ss_pred ccCcceEEEccCCH
Confidence 589999999863
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.92 E-value=0.54 Score=37.07 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.| .|++|-.++..|.+.|. +|++++.
T Consensus 20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~-~Vtlve~ 52 (115)
T d1lvla2 20 LPQHLVVVG-GGYIGLELGIAYRKLGA-QVSVVEA 52 (115)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHhhccc-ceEEEee
Confidence 358898985 59999999999999994 9999444
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.90 E-value=0.27 Score=42.07 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc--C
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE--G 84 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~--~ 84 (586)
++.+|+|.|+ |.+|...++.+...|..+|.+.|..+. +..+...+ ...+.+..+=.+.+...+... +
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~--------k~~~~~~~--ga~~~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE--------KLKLAERL--GADHVVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH--------HHHHHHHT--TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH--------HHHHHhhc--ccceeecCcccHHHHHHHhhCCCC
Confidence 4678999875 999999999998888667888655431 10111111 112333333222333444332 5
Q ss_pred CCEEEEcccC
Q 007866 85 ASTVFYVDAT 94 (586)
Q Consensus 85 ~D~Vih~aa~ 94 (586)
+|+||.+++.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 8999999876
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=84.80 E-value=0.3 Score=41.94 Aligned_cols=73 Identities=12% Similarity=0.244 Sum_probs=45.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCCEE
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGASTV 88 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D~V 88 (586)
.+|-+.| .|.+|..+++.|+++| ++|+++|+.++. ... +.+...... .. . .....+.+.+.+..+|.+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~dr~~~~----~~~---l~~~~~~~~-~~-~-~a~~~~~~~~~~~~~~~i 70 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHG-FVVCAFNRTVSK----VDD---FLANEAKGT-KV-L-GAHSLEEMVSKLKKPRRI 70 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSTHH----HHH---HHHTTTTTS-SC-E-ECSSHHHHHHHBCSSCEE
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCC-CeEEEEcCCHHH----HHH---HHHhccccc-cc-c-chhhhhhhhhhhcccceE
Confidence 5788885 6999999999999999 599997665421 000 000000000 00 0 123567777888889999
Q ss_pred EEccc
Q 007866 89 FYVDA 93 (586)
Q Consensus 89 ih~aa 93 (586)
+-+..
T Consensus 71 i~~~~ 75 (176)
T d2pgda2 71 ILLVK 75 (176)
T ss_dssp EECSC
T ss_pred EEecC
Confidence 88753
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=84.49 E-value=0.88 Score=36.06 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.|| |+||-.++..|.+.|. +|+++..
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~-~Vtiv~~ 53 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGA-EVTVLEA 53 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCC-ceEEEEe
Confidence 4588999964 9999999999999994 9998543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.48 E-value=0.35 Score=41.55 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
.+.+|+|+|+ |-+|...++.+...|..+|+++|...
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcH
Confidence 4678999975 99999999999999966899966543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.28 E-value=0.32 Score=41.64 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC-HHHHHHHhc-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD-ISQIKKVLE- 83 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d-~~~l~~~l~- 83 (586)
.++.+|+|.|+ |-+|...++.+...|..+|.+.|..+ .+..+.+.+. -.+.+..+-.| .+.+.++..
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~--------~k~~~a~~~G--a~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE--------SRLELAKQLG--ATHVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH--------HHHHHHHHHT--CSEEEETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH--------HHHHHHHHcC--CeEEEeCCCcCHHHHHHHHcCC
Confidence 35679999987 99999999999999966677755433 1111111111 12333332222 233334433
Q ss_pred CCCEEEEcccC
Q 007866 84 GASTVFYVDAT 94 (586)
Q Consensus 84 ~~D~Vih~aa~ 94 (586)
++|+||.+.+.
T Consensus 96 g~D~vid~~G~ 106 (174)
T d1f8fa2 96 GVNFALESTGS 106 (174)
T ss_dssp CEEEEEECSCC
T ss_pred CCcEEEEcCCc
Confidence 48999999876
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.28 E-value=0.65 Score=37.74 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
..++|+|.| +|++|-.++..|.+.| .+|++++..
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g-~~Vtvie~~ 67 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKAN-MHVTLLDTA 67 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhC-cceeeeeec
Confidence 368999995 5999999999999999 499995543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=84.22 E-value=0.28 Score=42.10 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCchHHH--HHHHHHhcC---CcEEEEecCCcccccCCCCCCCCCCCC--CCCCCeEEEEccCCCHHHHHH
Q 007866 8 PRTCVVLNGRGFVGRS--LVLRLLELG---KCIVRVTDSTQSLQLDPSESNSLLPDS--LSSGRAEYHQVDVRDISQIKK 80 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~--lv~~L~~~g---~~~V~~~d~~~~~~l~r~~~~~~~~~~--l~~~~~~~~~~Dl~d~~~l~~ 80 (586)
.|||.|.|| |.+|.. ++..|+... ..++..+|++... .+... ....+. ......+....+ | ..+
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~--~~~~~-~~~~~~~~~~~~~~~i~~~t--d---~~e 72 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEER--LDAIL-TIAKKYVEEVGADLKFEKTM--N---LDD 72 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHH--HHHHH-HHHHHHHHHTTCCCEEEEES--C---HHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchH--HHHHH-HHHHHHHHhcCCCeEEEEeC--C---hhh
Confidence 589999996 988865 344444321 1489998886531 00000 000000 011122332221 2 356
Q ss_pred HhcCCCEEEEcccCC
Q 007866 81 VLEGASTVFYVDATD 95 (586)
Q Consensus 81 ~l~~~D~Vih~aa~~ 95 (586)
+++++|+|+..++..
T Consensus 73 aL~dad~Vv~~~~~g 87 (171)
T d1obba1 73 VIIDADFVINTAMVG 87 (171)
T ss_dssp HHTTCSEEEECCCTT
T ss_pred cccCCCeEeeecccc
Confidence 789999999988764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=83.99 E-value=0.36 Score=41.44 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=28.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
|||-|. |.|..|..+++.|+++| ++|.++|+.+
T Consensus 2 MkIGvI-GlG~MG~~ma~~L~~~G-~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVV-GLGVMGANLALNIAEKG-FKVAVFNRTY 34 (178)
T ss_dssp BSEEEE-CCSHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CEEEEE-eehHHHHHHHHHHHHCC-CeEEEEECCH
Confidence 678888 68999999999999999 5999977654
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.90 E-value=0.32 Score=41.51 Aligned_cols=30 Identities=27% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~ 38 (586)
+.+|||+||+|-+|...++.....| .+|++
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~G-a~Via 53 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRG-YDVVA 53 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHT-CCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC-CceEE
Confidence 4579999999999999999999999 48888
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.64 E-value=0.62 Score=37.36 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
+++++|.|| |++|-.++..|.+.|. +|+++++
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~-~Vtlv~~ 53 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGS-KTSLMIR 53 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTC-EEEEECS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCc-EEEEEee
Confidence 579999965 9999999999999995 9999443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.43 E-value=0.48 Score=40.56 Aligned_cols=78 Identities=17% Similarity=0.087 Sum_probs=47.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCC--HHHHHHHh-
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRD--ISQIKKVL- 82 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d--~~~l~~~l- 82 (586)
.++.+|+|.|+ |-+|...++.+...|..+|++.|... ++-++...+. -...+...-.| .+...+..
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~--------~kl~~a~~lG--a~~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK--------DKFPKAIELG--ATECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG--------GGHHHHHHTT--CSEEECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChH--------HHHHHHHHcC--CcEEEcCCCchhHHHHHHHHhc
Confidence 35679999985 99999999999999966899966543 2111111111 11222221122 23333333
Q ss_pred -cCCCEEEEcccC
Q 007866 83 -EGASTVFYVDAT 94 (586)
Q Consensus 83 -~~~D~Vih~aa~ 94 (586)
.|+|+||.+.+.
T Consensus 95 ~~G~d~vid~~g~ 107 (174)
T d1p0fa2 95 NGGVDYAVECAGR 107 (174)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCcEEEEcCCC
Confidence 368999998876
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.34 E-value=0.78 Score=36.61 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
.+++++|.|| |+||-.++..|.+.|. +|+++.
T Consensus 19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~-~Vtii~ 50 (122)
T d1h6va2 19 CPGKTLVVGA-SYVALECAGFLAGIGL-DVTVMV 50 (122)
T ss_dssp CCCSEEEECC-SHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCCeEEEECC-CccHHHHHHHHhhcCC-eEEEEE
Confidence 4578999865 9999999999999994 899853
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.25 E-value=0.62 Score=37.17 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.++++|.| .|++|-.++..|.+.|. +|++++.
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~-~Vtlv~~ 63 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGY-HVKLIHR 63 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccc-eEEEEec
Confidence 36888885 49999999999999994 9999443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=83.16 E-value=0.16 Score=43.33 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhcCCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLEGAS 86 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~~~D 86 (586)
.+-+|+|.|| |-.|..-++.....|. +|+++|.... +... +...+ ..+++. -..+.+.+.+.++++|
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA-~V~~~D~~~~----~l~~---l~~~~-~~~~~~---~~~~~~~l~~~~~~aD 97 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVE----RLSY---LETLF-GSRVEL---LYSNSAEIETAVAEAD 97 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHH----HHHH---HHHHH-GGGSEE---EECCHHHHHHHHHTCS
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCC-EEEEEeCcHH----HHHH---HHHhh-ccccee---ehhhhhhHHHhhccCc
Confidence 3568999965 9999999999999995 9999887642 1110 00111 112222 2346788899999999
Q ss_pred EEEEcccCC
Q 007866 87 TVFYVDATD 95 (586)
Q Consensus 87 ~Vih~aa~~ 95 (586)
+||-++-..
T Consensus 98 ivI~aalip 106 (168)
T d1pjca1 98 LLIGAVLVP 106 (168)
T ss_dssp EEEECCCCT
T ss_pred EEEEeeecC
Confidence 999988765
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=83.14 E-value=0.72 Score=41.19 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCc
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQ 43 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~ 43 (586)
..++|+|.|| |..|-..+..|.++|+ +|.++|...
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~-~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGY-SVHILARDL 39 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence 3578999965 9999999999999996 999977653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=82.82 E-value=0.6 Score=37.37 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.| .|+||-.++..|.+.| .+|+++.+
T Consensus 24 ~p~~~viiG-~G~iglE~A~~~~~~G-~~Vtvi~~ 56 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMGSVWGRIG-SEVTVVEF 56 (123)
T ss_dssp CCSEEEESC-CSHHHHHHHHHHHHHT-CEEEEECS
T ss_pred cCCeEEEEc-cchHHHHHHHHHHhcC-CeEEEEEE
Confidence 467899996 4999999999999999 59999433
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=82.77 E-value=0.46 Score=39.65 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcC-CcEEEE
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELG-KCIVRV 38 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g-~~~V~~ 38 (586)
+|+|.|.|+||.||...++-+.+.. .++|.+
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~ 33 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIA 33 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEE
Confidence 5899999999999999999998863 367777
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.39 E-value=0.75 Score=33.62 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
+|+|.|.| +|.+|+-++.+-.+.| .++..+|..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG-~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLG-IAVWPVGLD 33 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGT-EEEEEECTT
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcC-CEEEEEcCC
Confidence 47899995 5999999999999999 599996654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=81.99 E-value=0.25 Score=42.30 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEe
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVT 39 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~ 39 (586)
..+++|+|.|+ |-.+++++-.|.+.|. +|+++
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~-~i~I~ 47 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDC-AVTIT 47 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccce-EEEec
Confidence 35789999976 7789999999999995 88883
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.92 E-value=0.79 Score=46.63 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCCccc--ccCCC-----CCCCC---------CCCCCCCCCeEEEEcc
Q 007866 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSL--QLDPS-----ESNSL---------LPDSLSSGRAEYHQVD 71 (586)
Q Consensus 8 ~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~~~~--~l~r~-----~~~~~---------~~~~l~~~~~~~~~~D 71 (586)
..+|+|.|+ |-+|..+++.|...|.-.++++|.+.-. ++.|. .+-+. +.+....-+++.+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 468999986 6799999999999997689998875411 11111 11000 1111111123344433
Q ss_pred CCCH-HHHHHHhcCCCEEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccc
Q 007866 72 VRDI-SQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFD 138 (586)
Q Consensus 72 l~d~-~~l~~~l~~~D~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~vyg~ 138 (586)
..+. +.-.+.+.++|+||.+... ......+-++|++.++ .+|+++|.+.||.
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~~~--------------~~~~~~l~~~c~~~~i-p~i~~~~~G~~G~ 156 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQLP--------------ESTSLRLADVLWNSQI-PLLICRTYGLVGY 156 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESCC--------------HHHHHHHHHHHHHHTC-CEEEEEEETTEEE
T ss_pred chhhhhhHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHcCC-CEEEEeccCCEEE
Confidence 3221 1112446789999976421 2223456778888887 5999999988874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.71 E-value=0.63 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEec
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTD 40 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d 40 (586)
..+++|||.|| |.+|..-++.|++.|. +|++++
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA-~VtVva 43 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGC-KLTLVS 43 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTC-EEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEe
Confidence 46899999988 9999999999999995 888753
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.35 E-value=0.53 Score=40.03 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 6 ~~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.++.+|+|.|+ |-+|...+..+...|..+|++.|..
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~ 62 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN 62 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecch
Confidence 35678999986 5588888888888876689985544
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.17 E-value=0.82 Score=36.78 Aligned_cols=94 Identities=7% Similarity=0.012 Sum_probs=54.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhcCCcEEEE-ecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHHHHHHhc-CCC
Q 007866 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRV-TDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQIKKVLE-GAS 86 (586)
Q Consensus 9 ~~IlVTGatG~IG~~lv~~L~~~g~~~V~~-~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~l~~~l~-~~D 86 (586)
.+|+|.| +|.+|+.+++.+.....+++.+ +|.++ . .....+ .++..+.. +.+.+... .++
T Consensus 4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~--------~--k~G~~I--~Gi~V~~~-----~~l~~~~~~~i~ 65 (126)
T d2dt5a2 4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDP--------E--KVGRPV--RGGVIEHV-----DLLPQRVPGRIE 65 (126)
T ss_dssp EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCT--------T--TTTCEE--TTEEEEEG-----GGHHHHSTTTCC
T ss_pred ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCch--------H--hcCCEE--CCEEEecH-----HHHHHHHhhccc
Confidence 4789985 5999999999876654467665 33322 1 111111 24555533 23444444 355
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccc
Q 007866 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADV 135 (586)
Q Consensus 87 ~Vih~aa~~~~~~~~~~~~~~Nv~gt~~lleaa~~~gvkr~I~~SS~~v 135 (586)
.++-+... ...+.+++.|.++|++.+.-++....
T Consensus 66 iai~~i~~---------------~~~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 66 IALLTVPR---------------EAAQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp EEEECSCH---------------HHHHHHHHHHHHHTCCEEEECSSSCC
T ss_pred EEEEeCCH---------------HHHHHHHHHHHHcCCCEEeecCceee
Confidence 55543311 12345788888899998877665544
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=80.89 E-value=1.6 Score=34.30 Aligned_cols=34 Identities=15% Similarity=-0.035 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecCC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDST 42 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~~ 42 (586)
.+++|+|.| +|++|-.++..|.+.|. +|.+++..
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~-~vt~i~~~ 54 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGR-RTVMLVRT 54 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcch-hheEeecc
Confidence 468999885 59999999999999994 89985443
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=80.88 E-value=0.85 Score=36.61 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhcCCcEEEEecC
Q 007866 7 IPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDS 41 (586)
Q Consensus 7 ~~~~IlVTGatG~IG~~lv~~L~~~g~~~V~~~d~ 41 (586)
.+++++|.|| |+||-.++..|.+.| .+|++++.
T Consensus 25 ~p~~vvIiGg-G~IG~E~A~~~~~~G-~~Vtive~ 57 (125)
T d1ojta2 25 VPGKLLIIGG-GIIGLEMGTVYSTLG-SRLDVVEM 57 (125)
T ss_dssp CCSEEEEESC-SHHHHHHHHHHHHHT-CEEEEECS
T ss_pred cCCeEEEECC-CHHHHHHHHHhhcCC-CEEEEEEe
Confidence 3578999965 999999999999999 59999544
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| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.75 E-value=2 Score=34.37 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=50.0
Q ss_pred CCCCCCCCCeEEEEcCCC----------chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEc
Q 007866 1 MPFDEAIPRTCVVLNGRG----------FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70 (586)
Q Consensus 1 M~~~~~~~~~IlVTGatG----------~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~ 70 (586)
|+.. ...++|+|.|+.. |-+.+.+++|.+.| ++++.++..++. .. .+ ..-..-+..
T Consensus 1 mp~~-~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g-~~~iliN~NP~T--Vs-td---------~d~aD~lYf 66 (127)
T d1a9xa3 1 MPKR-TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG-YRVINVNSNPAT--IM-TD---------PEMADATYI 66 (127)
T ss_dssp CCCC-SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT-CEEEEECSCTTC--GG-GC---------GGGSSEEEC
T ss_pred CCCC-CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC-CeEEEecCchHh--hh-cC---------hhhcceeee
Confidence 5443 3458999999844 57889999999999 588886655431 11 11 001123344
Q ss_pred cCCCHHHHHHHhc--CCCEEEEcc
Q 007866 71 DVRDISQIKKVLE--GASTVFYVD 92 (586)
Q Consensus 71 Dl~d~~~l~~~l~--~~D~Vih~a 92 (586)
.-.+.+.+.+.++ ++|.|+-..
T Consensus 67 ePlt~e~v~~Ii~~E~pd~il~~~ 90 (127)
T d1a9xa3 67 EPIHWEVVRKIIEKERPDAVLPTM 90 (127)
T ss_dssp SCCCHHHHHHHHHHHCCSEEECSS
T ss_pred ecCCHHHHHHHHHHhCcCCeEEEe
Confidence 4456788888874 799988543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.31 E-value=6.3 Score=30.93 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred CCeEEEEcCCC----------chHHHHHHHHHhcCCcEEEEecCCcccccCCCCCCCCCCCCCCCCCeEEEEccCCCHHH
Q 007866 8 PRTCVVLNGRG----------FVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVDVRDISQ 77 (586)
Q Consensus 8 ~~~IlVTGatG----------~IG~~lv~~L~~~g~~~V~~~d~~~~~~l~r~~~~~~~~~~l~~~~~~~~~~Dl~d~~~ 77 (586)
.++|+|.|+.. |-+.+.+++|.+.| ++++.++..++ ... .+ ..-..-+...-...+.
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~NPe--TVs-td---------~d~aD~lYfeplt~e~ 70 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCNPE--TVS-TD---------YDTSDRLYFEPVTLED 70 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCCTT--SST-TS---------TTSSSEEECCCCSHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecChh--hhh-cC---------hhhcCceEEccCCHHH
Confidence 57999998854 67889999999999 58888666553 111 11 0112233334446777
Q ss_pred HHHHh--cCCCEEEEcc
Q 007866 78 IKKVL--EGASTVFYVD 92 (586)
Q Consensus 78 l~~~l--~~~D~Vih~a 92 (586)
+.+.+ +++|.|+---
T Consensus 71 v~~Ii~~E~p~~ii~~~ 87 (121)
T d1a9xa4 71 VLEIVRIEKPKGVIVQY 87 (121)
T ss_dssp HHHHHHHHCCSEEECSS
T ss_pred HHHHHHHhCCCEEEeeh
Confidence 77776 4788887543
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