Citrus Sinensis ID: 007889

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccc
********************************************INDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPT****
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MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
(3S,6E)-nerolidol synthase 1, chloroplastic Involved in monoterpene (C10) and sesquiterpene (C15) biosynthesis. Converts geranyl diphosphate (GPP) into S-linalool and farnesyl diphosphate (FPP) into (3S)-E-nerolidol (By similarity). Probably not expressed in wild strawberry species.probableP0CV96
(3S,6E)-nerolidol synthase 1 Involved in monoterpene (C10) and sesquiterpene (C15) biosynthesis. Converts geranyl diphosphate (GPP) into S-linalool and farnesyl diphosphate (FPP) into (3S)-E-nerolidol. Exclusively present and highly expressed in the fruit of cultivated (octaploid) varieties.probableP0CV94
S-(+)-linalool synthase, chloroplastic Involved in monoterpene (C10) biosynthesis. The major product is S-(+)-linalool.probableQ84UV0

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
4.-.-.-Lyases.probable
4.2.-.-Carbon-oxygen lyases.probable
4.2.3.-Acting on phosphates.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3N0F, chain A
Confidence level:very confident
Coverage over the Query: 44-581
View the alignment between query and template
View the model in PyMOL