Citrus Sinensis ID: 007889

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccc
ccccHHHHcccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccc
mafpskiissasshvqvipeqtskvgkQNLSdinsllpnnkngnindsigvsaplkhvtypcehrsfnnddihiDHAKKLDAVKHILIrvgdddpfeglAMIDTVQRLGIDYYFQDEIEQILQRQSIVfsnhgdrhnDLQEVALRFRLLRqqgyyvspdvfnnfrnkegkskqnisgDINGLMSLYEASqlsivgedvldeagdFSVNLLSEYATHLADYDLAGLVKHLLlhpyrkslssarnffhgnfqgnEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKlefardqplkwymwsmacftdpslswqrieltkpisfiYIIDDIFDIYGALDVLTLFTEAINRwdlggieqlpECMKICFKALNDITNEISNKvykehgynpvhSLRKAWGSLCNAFLTEAkwfasgqlpkaeeYLKNGIVSSGVHLGLVHIFFLLghgitsetvrlidsnppivsSVATILRLWDdlgsakdenqdgndgsYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLnqeclspnpfsasfTRASLNIARMVPlmysyddnqrlPRLEEYIKSLLfdnlptqgvy
mafpskiissasshvqvipeqtskvgkQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRvgdddpfegLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDlgsakdenqdgnDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSllfdnlptqgvy
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISfiyiiddifdiyGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY
***********************************************SIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFR**********SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLG**********DGSYIYYYMMEHQDVT***********ISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDN*******
********************************************INDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYA**L*DYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPT****
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKN****DSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGV*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNLPTQGVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
P0CV96580 (3S,6E)-nerolidol synthas N/A no 0.950 0.960 0.571 0.0
P0CV94519 (3S,6E)-nerolidol synthas N/A no 0.858 0.969 0.613 0.0
P0CV95578 (3S,6E)-nerolidol synthas N/A no 0.945 0.958 0.564 0.0
Q84UV0569 S-(+)-linalool synthase, yes no 0.959 0.987 0.476 1e-148
Q84ND0581 Tricyclene synthase Oc15, N/A no 0.938 0.946 0.456 1e-135
Q84NC9584 Tricyclene synthase 1e20, N/A no 0.938 0.941 0.456 1e-135
Q84NC8579 Tricyclene synthase 0e23, N/A no 0.911 0.922 0.451 1e-133
Q5SBP3574 R-linalool synthase, chlo N/A no 0.901 0.919 0.372 2e-98
Q6USK1567 Geraniol synthase, chloro N/A no 0.807 0.834 0.393 2e-98
Q6Q3H3557 (-)-germacrene D synthase no no 0.863 0.908 0.370 7e-94
>sp|P0CV96|NES1_FRAVE (3S,6E)-nerolidol synthase 1, chloroplastic OS=Fragaria vesca PE=1 SV=1 Back     alignment and function desciption
 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/572 (57%), Positives = 421/572 (73%), Gaps = 15/572 (2%)

Query: 16  QVIPEQTSKVGKQNLSDIN--SLLPN-NKNGNINDSI--GVSAPLKHVTYPCEHRSFNND 70
           Q+ P+  S +G+ +L  +     LP   + G   DS+    + P+K +    +H +    
Sbjct: 15  QIAPKSISHIGQSDLMQLTHKKQLPTFQRRGIAEDSLLPSSTTPIKPMHVETKH-TRTMG 73

Query: 71  DIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFS 130
           DI + H++KL+  +++L    + D  EGL MID VQRLGIDY+FQ EI++IL +Q  + S
Sbjct: 74  DIFVQHSQKLELFRNVLRNAAELDALEGLNMIDAVQRLGIDYHFQREIDEILHKQMGIVS 133

Query: 131 NHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQ 190
                 +DL EVALRFRLLRQ GY+V  DVFNNF++ +G  KQ +  DI GLMSLYEASQ
Sbjct: 134 ----ACDDLYEVALRFRLLRQHGYFVPEDVFNNFKDSKGTFKQVLGEDIKGLMSLYEASQ 189

Query: 191 LSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGN 248
           L   GED L EA  FS +LL    +HL D   A +V + L +P+RKSL+S  ARNFF  +
Sbjct: 190 LGTEGEDTLVEAEKFSGHLLKTSLSHL-DRHRARIVGNTLRNPHRKSLASFMARNFFVTS 248

Query: 249 FQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMW 308
              N   W+  LKE+A  DF +V+S+HQKEIVQISKWWKELGL K+L+FARDQPLKWY W
Sbjct: 249 QATNS--WLNLLKEVAKTDFNMVRSVHQKEIVQISKWWKELGLVKELKFARDQPLKWYTW 306

Query: 309 SMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPE 368
           SMA  TDP LS +R+ELTKPISF+Y+IDDIFD+YG LD L LFTEA+NRW++  I+ LP+
Sbjct: 307 SMAGLTDPKLSEERVELTKPISFVYLIDDIFDVYGTLDDLILFTEAVNRWEITAIDHLPD 366

Query: 369 CMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEE 428
            MKICFKAL D+TNE S KVY++HG+NP+ SL+ +W SLCNAFL EAKWFASGQLPK+EE
Sbjct: 367 YMKICFKALYDMTNEFSCKVYQKHGWNPLRSLKISWASLCNAFLVEAKWFASGQLPKSEE 426

Query: 429 YLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDE 488
           YLKNGIVSSGV++GLVH+FFLLG  IT ++V L++  P ++SS A ILRLWDDLGSAKDE
Sbjct: 427 YLKNGIVSSGVNVGLVHMFFLLGQNITRKSVELLNETPAMISSSAAILRLWDDLGSAKDE 486

Query: 489 NQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLN 548
           NQDGNDGSY+  Y+ EH+  + E+A++  ++ ISD WK+LN+E LSPNPF A+FT ASLN
Sbjct: 487 NQDGNDGSYVRCYLEEHEGCSIEEAREKTINMISDEWKKLNRELLSPNPFPATFTSASLN 546

Query: 549 IARMVPLMYSYDDNQRLPRLEEYIKSLLFDNL 580
           +ARM+PLMYSYD NQ LP L+EY+K +L++ +
Sbjct: 547 LARMIPLMYSYDGNQSLPSLKEYMKLMLYETV 578
Involved in monoterpene (C10) and sesquiterpene (C15) biosynthesis. Converts geranyl diphosphate (GPP) into S-linalool and farnesyl diphosphate (FPP) into (3S)-E-nerolidol (By similarity). Probably not expressed in wild strawberry species.
Fragaria vesca (taxid: 57918)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 8
>sp|P0CV94|NES1_FRAAN (3S,6E)-nerolidol synthase 1 OS=Fragaria ananassa PE=1 SV=1 Back     alignment and function description
>sp|P0CV95|NES2_FRAAN (3S,6E)-nerolidol synthase 2, chloroplastic/mitochondrial OS=Fragaria ananassa PE=1 SV=1 Back     alignment and function description
>sp|Q84UV0|LINS_ARATH S-(+)-linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=2 Back     alignment and function description
>sp|Q84ND0|TPS2_ANTMA Tricyclene synthase Oc15, chloroplastic OS=Antirrhinum majus GN=Oc15 PE=1 SV=1 Back     alignment and function description
>sp|Q84NC9|TPS3_ANTMA Tricyclene synthase 1e20, chloroplastic OS=Antirrhinum majus GN=1e20 PE=1 SV=1 Back     alignment and function description
>sp|Q84NC8|TPS1_ANTMA Tricyclene synthase 0e23, chloroplastic OS=Antirrhinum majus GN=0e23 PE=1 SV=1 Back     alignment and function description
>sp|Q5SBP3|LLOS_OCIBA R-linalool synthase, chloroplastic OS=Ocimum basilicum GN=LIS PE=1 SV=1 Back     alignment and function description
>sp|Q6USK1|GERS_OCIBA Geraniol synthase, chloroplastic OS=Ocimum basilicum GN=GES PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
336318893573 terpene synthase 3 [Populus trichocarpa] 0.967 0.989 0.609 0.0
359496657584 PREDICTED: (3S,6E)-nerolidol synthase 1, 0.953 0.957 0.624 0.0
313755440612 (3S)-linalool/(E)-nerolidol synthase [Vi 0.964 0.923 0.609 0.0
374087946577 (3S)-linalool/(E)-nerolidol synthase [Vi 0.964 0.979 0.606 0.0
313755442577 (3S)-linalool/(E)-nerolidol synthase [Vi 0.964 0.979 0.608 0.0
359496214612 PREDICTED: (3S,6E)-nerolidol synthase 1, 0.964 0.923 0.606 0.0
359496208583 PREDICTED: (3S,6E)-nerolidol synthase 1, 0.952 0.957 0.624 0.0
359496659584 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.953 0.957 0.619 0.0
359496180582 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.950 0.957 0.620 0.0
359496210601 PREDICTED: LOW QUALITY PROTEIN: (3S,6E)- 0.965 0.941 0.600 0.0
>gi|336318893|gb|AEI52903.1| terpene synthase 3 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/584 (60%), Positives = 439/584 (75%), Gaps = 17/584 (2%)

Query: 1   MAFPSKIISSASSHVQVIPEQTSKVGKQNLSDINSLLPNNKNGNINDSIGVS-APLKHVT 59
           MA    +  +A+S       + S+  K  L +    LP+ +  +++    ++  P K   
Sbjct: 1   MALSCSVSLTAASGWPFPQNRNSERVKPILKEFKPTLPSTQKWSVSQKQTLAFGPTKQ-- 58

Query: 60  YPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIE 119
           YP    + NNDD    +A+KL   KHIL + G++ P +GLAMID +QRL IDY+FQ+EI+
Sbjct: 59  YPI---TINNDDSDTGYAEKLQTFKHILRKEGEE-PIQGLAMIDAIQRLSIDYHFQEEID 114

Query: 120 QILQRQSIVFSN-HGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGD 178
            IL RQS++ S  H D  N+L EVALRFRLLRQQGY+VS  VF+NF++ EG+ KQ +S D
Sbjct: 115 SILTRQSMLLSTIHSD--NNLYEVALRFRLLRQQGYHVSAGVFDNFKDNEGRFKQQLSSD 172

Query: 179 INGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSL 238
           I GL+SLYEASQLSI GEDVLDEAGD+S  LL    THL DY+ A LV++ L HP+ KSL
Sbjct: 173 IMGLVSLYEASQLSIRGEDVLDEAGDYSYQLLRSSLTHL-DYNQARLVRNSLDHPHHKSL 231

Query: 239 SS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLE 296
           +S  A+ FF+    G    WI +L+ELA  +FK VQS HQ EIV+I KWWK+LGL+ +L 
Sbjct: 232 ASFTAKYFFNDEPNG----WIGELQELAKTEFKRVQSQHQHEIVEIFKWWKDLGLSTELR 287

Query: 297 FARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAIN 356
           FARDQPLKWYMWSM+C TDPSLS QRIELTKP+S IYIIDDIFD++G L+ L  FTE IN
Sbjct: 288 FARDQPLKWYMWSMSCLTDPSLSEQRIELTKPVSMIYIIDDIFDVHGTLNELVCFTEVIN 347

Query: 357 RWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAK 416
           RWD+   EQLP+ MKICFKALN+ITNEIS K+YKEHG+NPV SLRKAW SLC AFL EA+
Sbjct: 348 RWDIAAAEQLPDYMKICFKALNNITNEISYKIYKEHGWNPVESLRKAWASLCRAFLVEAR 407

Query: 417 WFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATIL 476
           WFASG+ P  EEYLKNGIVSSGVH+ LVHIFFLLG GI+ E V LI + PPI+SS ATIL
Sbjct: 408 WFASGKFPSGEEYLKNGIVSSGVHVVLVHIFFLLGQGISKENVELISNFPPIISSTATIL 467

Query: 477 RLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPN 536
           RLWDDLGSAKDENQDG+DGSY+  Y+ E++  + EDA+K  +  ISDAWK+LNQECLSPN
Sbjct: 468 RLWDDLGSAKDENQDGHDGSYVECYLRENEGSSLEDARKQVLHLISDAWKQLNQECLSPN 527

Query: 537 PFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLLFDNL 580
           PF ++F++ASLNIARMVPLMY YDDN RLP LEE++KSLL++N+
Sbjct: 528 PFPSTFSKASLNIARMVPLMYDYDDNHRLPSLEEHMKSLLYENV 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496657|ref|XP_003635291.1| PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755440|gb|ADR74211.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|374087946|gb|AEY82696.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|313755442|gb|ADR74212.1| (3S)-linalool/(E)-nerolidol synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496214|ref|XP_002263717.2| PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496208|ref|XP_003635177.1| PREDICTED: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496659|ref|XP_003635292.1| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496180|ref|XP_003635170.1| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496210|ref|XP_002270107.2| PREDICTED: LOW QUALITY PROTEIN: (3S,6E)-nerolidol synthase 1, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2195768569 TPS14 "terpene synthase 14" [A 0.957 0.985 0.470 6.6e-129
UNIPROTKB|Q84NC9584 1e20 "Tricyclene synthase 1e20 0.931 0.934 0.443 7.7e-119
UNIPROTKB|Q84ND0581 Oc15 "Tricyclene synthase Oc15 0.931 0.939 0.443 7.7e-119
UNIPROTKB|Q84NC8579 0e23 "Tricyclene synthase 0e23 0.863 0.873 0.447 1.4e-117
UNIPROTKB|Q6USK1567 GES "Geraniol synthase, chloro 0.807 0.834 0.389 7.7e-87
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.953 0.944 0.340 5.5e-77
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.880 0.923 0.342 1.5e-76
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.854 0.917 0.332 2.2e-73
UNIPROTKB|Q5UB07580 TPS4 "Tricyclene synthase TPS4 0.846 0.855 0.356 2.8e-73
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.825 0.802 0.363 5.9e-73
TAIR|locus:2195768 TPS14 "terpene synthase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 275/584 (47%), Positives = 366/584 (62%)

Query:     1 MAFPSKIISSASSHVQVIPEQ--TSKVGKQNLSDINSLLPNN--KNGNI-NDSIGVSAPL 55
             MA  +  ISS S  V   P    T  + K   + ++SL P N  K   + N    VS P 
Sbjct:     1 MALIATKISSRSCFVSAYPNNSPTFLISKFP-NTVDSLSPANTAKRSILRNVHASVSNPS 59

Query:    56 KHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQ 115
             K       H   + + +H  + KK   +K+IL     D P E L MID +Q LGID +F+
Sbjct:    60 KQF-----HNKTSLEYLHELNIKK---IKNIL-SANVDVPSENLEMIDVIQSLGIDLHFR 110

Query:   116 DEIEQILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNI 175
              EIEQ L    +++      + DL E+ALRFRLLRQ+G+YV   +F N  +K+G  K  +
Sbjct:   111 QEIEQTLH---MIYKEGLQFNGDLHEIALRFRLLRQEGHYVQEIIFKNILDKKGGFKDVV 167

Query:   176 SGDINGLMSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLL--HP 233
               D+ GL  L+EAS+L + GE+ LD A +F+ + L+E  +    +    ++K L    H 
Sbjct:   168 KNDVKGLTELFEASELRVEGEETLDGAREFTYSRLNELCSGRESHQKQEIMKSLAQPRHK 227

Query:   234 YRKSLSSARNFFHGNFQGNEYV-WILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLA 292
               + L+S R        G E   W+  L  +A +D   ++SL Q E+ Q  KWW ELGL 
Sbjct:   228 TVRGLTSKRFTSMIKIAGQEDPEWLQSLLRVAEIDSIRLKSLTQGEMSQTFKWWTELGLE 287

Query:   293 KKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFT 352
             K +E AR QPLKW+ WSM    DP+L+ QR++LTKPIS            G L+ LT+FT
Sbjct:   288 KDVEKARSQPLKWHTWSMKILQDPTLTEQRLDLTKPISLVYVIDDIFDVYGELEELTIFT 347

Query:   353 EAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFL 412
               + RWD  G++ LP+ M++CF+AL+ IT EIS K+YK HG+NP ++LR++W SLC AFL
Sbjct:   348 RVVERWDHKGLKTLPKYMRVCFEALDMITTEISMKIYKSHGWNPTYALRQSWASLCKAFL 407

Query:   413 TEAKWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSV 472
              EAKWF SG LP  EEY+KNG+VSSGVHL ++H + LLG  +T E V LI+SNP IVSS 
Sbjct:   408 VEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSA 467

Query:   473 ATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQEC 532
             ATILRLWDDLGSAKDENQDG DGSY+  Y+ E++  T ++A+ H   KIS AWKRLN+EC
Sbjct:   468 ATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNREC 527

Query:   533 LSPNPFSASFTRASLNIARMVPLMYSYDDNQRLPRLEEYIKSLL 576
             L+P PFS SF++A LNIAR VPLMYSYDD+QRLP  +EY+KSL+
Sbjct:   528 LNPCPFSRSFSKACLNIARTVPLMYSYDDDQRLP--DEYLKSLM 569
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0010333 "terpene synthase activity" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0034007 "S-linalool synthase activity" evidence=IDA
GO:0043693 "monoterpene biosynthetic process" evidence=IDA
UNIPROTKB|Q84NC9 1e20 "Tricyclene synthase 1e20, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
UNIPROTKB|Q84ND0 Oc15 "Tricyclene synthase Oc15, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
UNIPROTKB|Q84NC8 0e23 "Tricyclene synthase 0e23, chloroplastic" [Antirrhinum majus (taxid:4151)] Back     alignment and assigned GO terms
UNIPROTKB|Q6USK1 GES "Geraniol synthase, chloroplastic" [Ocimum basilicum (taxid:39350)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q5UB07 TPS4 "Tricyclene synthase TPS4, chloroplastic" [Medicago truncatula (taxid:3880)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84UV0LINS_ARATH4, ., 2, ., 3, ., 2, 50.47680.95900.9876yesno
P0CV96NES1_FRAVE4, ., 2, ., 3, ., 4, 80.57160.95050.9603N/Ano
P0CV94NES1_FRAAN4, ., 2, ., 3, ., 4, 80.61320.85830.9691N/Ano
P0CV95NES2_FRAAN4, ., 2, ., 3, ., 4, 80.56410.94530.9584N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-169
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 6e-85
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 3e-84
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 5e-52
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-39
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-29
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 5e-24
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  492 bits (1268), Expect = e-169
 Identities = 207/500 (41%), Positives = 297/500 (59%), Gaps = 17/500 (3%)

Query: 90  VGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFSNHGDRHN----DLQEVALR 145
               D FE L +ID +QRLGI Y+F+DEI++IL     ++    +R      DL   AL 
Sbjct: 48  EYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDY---IYRYWTERGESNEDDLYTTALG 104

Query: 146 FRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLDEAGDF 205
           FRLLRQ GY VS DVF  F++++GK K++++ D+ G++SLYEAS LS  GED+LDEA  F
Sbjct: 105 FRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSF 164

Query: 206 SVNLLSEYATHLA--DYDLAGLVKHLLLHPYRKSLS--SARNFFHGNFQGNEYVWILDLK 261
           +   L E        D DL+G +++ L  P   SL    AR +    F   E      L 
Sbjct: 165 TTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIE--FYEQEDDHNETLL 222

Query: 262 ELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQ 321
           ELA +DF ++Q+LHQ+E+  +S+WWK+L LA KL FARD+ ++ Y W+   + +P  S  
Sbjct: 223 ELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLA 282

Query: 322 RIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDIT 381
           RI L K I+ I +IDD +D+YG L+ L LFTEA+ RWD+  I+QLPE MKI FKAL +  
Sbjct: 283 RIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTV 342

Query: 382 NEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSGVHL 441
           NEI  ++ KE G   V  L++AW  L  A+L EAKW   G +P  EEY++N +VS G+  
Sbjct: 343 NEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGP 402

Query: 442 GLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYY 501
            L+  F  +G  +T E    ++S P +V + +TI RL +D+ + +DE + G+  S I  Y
Sbjct: 403 LLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECY 462

Query: 502 MMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPN-PFSASFTRASLNIARMVPLMYSYD 560
           M E+  V+ E+A++     I DAWK LN+E L P+        +  LN+AR++ + Y   
Sbjct: 463 MKEYG-VSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG 521

Query: 561 DNQRLPRLE--EYIKSLLFD 578
           D    P  E  ++I SLLF+
Sbjct: 522 DGFTHPEGEIKDHITSLLFE 541

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.96
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.82
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.49
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.45
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 85.39
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 80.64
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7.9e-150  Score=1248.45  Aligned_cols=531  Identities=39%  Similarity=0.651  Sum_probs=507.9

Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhc--CCCCcccchhHHHHHHHhCCccchHHHHH
Q 007889           42 NGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRV--GDDDPFEGLAMIDTVQRLGIDYYFQDEIE  119 (586)
Q Consensus        42 r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~--~~~d~~~~L~lID~lqrLGi~~hFe~EI~  119 (586)
                      |+++|||||+|+.|+|+|+++++.. . ....++.+++|++||+||...  +. |++++|++||+||||||+|||++||+
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~-~~~~~~~~~lk~~v~~~~~~~~~~~-~~~~~l~liD~lqrLGi~~hF~~EI~   77 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-E-DELEEEIEELKEEVRKMLEDSEYPV-DLFERLWLIDRLQRLGISYHFEDEIK   77 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-h-HHHHHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            7899999999944499999776532 1 245677789999999999863  34 89999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCC-CCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchH
Q 007889          120 QILQRQSIVFSNHG-DRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDV  198 (586)
Q Consensus       120 ~~L~~i~~~~~~~~-~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~i  198 (586)
                      ++|++||++|.+.+ ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+||||+|
T Consensus        78 ~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~i  157 (542)
T cd00684          78 EILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDI  157 (542)
T ss_pred             HHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHH
Confidence            99999999886432 34579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh---cCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhh
Q 007889          199 LDEAGDFSVNLLSEYATH---LADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQS  273 (586)
Q Consensus       199 LdeA~~Ft~~~L~~~~~~---~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~  273 (586)
                      ||||++||++||++.+++   + +++|+++|++||++|||+++||  ||+|| ++|+++ +++|++||||||+|||+||+
T Consensus       158 LdeA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi-~~Y~~~-~~~n~~lLelAkldfn~~Q~  234 (542)
T cd00684         158 LDEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARWYI-EFYEQE-DDHNETLLELAKLDFNILQA  234 (542)
T ss_pred             HHHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHHHH-HHhCCC-ccccHHHHHHHHHHHHHHhH
Confidence            999999999999999986   5 8899999999999999999999  99999 999999 99999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHH
Q 007889          274 LHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTE  353 (586)
Q Consensus       274 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~  353 (586)
                      +||+||++++|||+++||.+++||+|+|+++||||++|++|||++|.+|+++||+++|+|++||+||.|||.+|++.||+
T Consensus       235 ~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~  314 (542)
T cd00684         235 LHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTE  314 (542)
T ss_pred             hHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHH
Confidence            99999999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhc
Q 007889          354 AINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNG  433 (586)
Q Consensus       354 ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~  433 (586)
                      ||+|||+++++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|++++++|++||+|+++||+||++|||++|
T Consensus       315 ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~  394 (542)
T cd00684         315 AVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENA  394 (542)
T ss_pred             HHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHH
Q 007889          434 IVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDA  513 (586)
Q Consensus       434 ~~S~g~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA  513 (586)
                      ++|+|+++++++++++||..+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+ |+|+|+|
T Consensus       395 ~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~-g~s~eeA  473 (542)
T cd00684         395 LVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEY-GVSEEEA  473 (542)
T ss_pred             hHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhc-CCCHHHH
Confidence            999999999999999999999999999987789999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhcccc
Q 007889          514 QKHAMDKISDAWKRLNQECLSP-NPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDN  579 (586)
Q Consensus       514 ~~~i~~~i~~~wK~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~p  579 (586)
                      +++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|  .+|++|++||++|
T Consensus       474 ~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         474 REEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            9999999999999999999988 7899999999999999999999999999998  5999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-75
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-74
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-73
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-68
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-63
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-63
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 4e-63
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-63
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 8e-63
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-62
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-62
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-61
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 3e-61
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-60
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 7e-60
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-51
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 9e-51
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 9e-20
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  281 bits (718), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 259/507 (51%), Gaps = 23/507 (4%)
Query: 71  DIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQILQRQSIVFS 130
           +++ D AKKL+A     I     +    L +ID VQRLG+ Y F+ +I + L R      
Sbjct: 40  EVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGG 99
Query: 131 NHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQ 190
             G     L   AL FRLLRQ G+ VS + F+ F+++ G   +N+  D   ++SLYEAS 
Sbjct: 100 FDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASF 159
Query: 191 LSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSSARNFFHGNFQ 250
           L++ GE++LDEA  F+++ L E +      +LA  V H L  P            H   Q
Sbjct: 160 LALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELP-----------LHRRTQ 208
Query: 251 GNEYVWILD-----------LKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFAR 299
             E VW ++           L ELA +D+ ++QS++Q+++ + S+WW+ +GLA KL FAR
Sbjct: 209 RLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFAR 268
Query: 300 DQPLKWYMWSMACFTDPSLSWQRIELTKPISXXXXXXXXXXXXGALDVLTLFTEAINRWD 359
           D+ ++ + W++    +P  S  R  + K  S            G LD L LFT+A+ RWD
Sbjct: 269 DRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWD 328
Query: 360 LGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFA 419
           +  I  LP+ MK+CF AL +  NEI+    K+ G N +  L KAW  LCNAFL EAKW  
Sbjct: 329 VNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLY 388
Query: 420 SGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLW 479
           +   P  ++Y  N   SS   L L+  +F +   I  E +  +     I+S  + I RL 
Sbjct: 389 NKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLC 448
Query: 480 DDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFS 539
           +DL SA  E   G   + +  Y M  + ++ E A +  M+ I + WK++N+E L  + F+
Sbjct: 449 NDLASASAEIARGETANSVSCY-MRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFA 507
Query: 540 ASFTRASLNIARMVPLMYSYDDNQRLP 566
             F   ++N+AR     Y   D    P
Sbjct: 508 KPFVETAINLARQSHCTYHNGDAHTSP 534
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-153
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-150
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-146
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-145
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-144
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-143
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-133
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-131
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-130
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 6e-86
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-30
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 1e-27
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  451 bits (1162), Expect = e-153
 Identities = 176/523 (33%), Positives = 277/523 (52%), Gaps = 14/523 (2%)

Query: 66  SFNNDDIHIDHAKKLDAVKHILIRV---GDDDPFEGLAMIDTVQRLGIDYYFQDEIEQIL 122
           +  + +I  +  K+   +K  + ++      +  + LA ID+VQRLG+ Y+F  EIE  L
Sbjct: 38  NCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDEL 97

Query: 123 QRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGL 182
           +    ++ N+ D  NDL   ++RFRLLR+ GY VS DVFN F++++G  K +++ D+ GL
Sbjct: 98  EN---IYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGL 154

Query: 183 MSLYEASQLSIVGEDVLDEAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLS--S 240
           + LY+AS L + GED+LDEA  F+ + LS     L D+ L+  V H L    R+ L    
Sbjct: 155 LELYQASYLRVHGEDILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVE 213

Query: 241 ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARD 300
           AR++   +   +       L E A +DF ++Q LH+KE+ +I +WWK+L   +KL +ARD
Sbjct: 214 ARHYL--SVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARD 271

Query: 301 QPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDL 360
           + ++ Y W    + +P  S  R  LTK I+   I+DD +D Y   + L  +T AI RWD+
Sbjct: 272 RVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDI 331

Query: 361 GGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFAS 420
             I+++PE MK  +KAL D+  E+   V +      V   + A   L  ++L EAKW   
Sbjct: 332 KCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQ 391

Query: 421 GQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWD 480
              P  EE+  N + + G  +  +  F  +G  +T ET +   S+P I+ +   I R  D
Sbjct: 392 NYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMD 451

Query: 481 DLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSA 540
           D+   K +++  +D S I  YM E+  VTA++A       +  AWK LNQE L P     
Sbjct: 452 DVAEHKFKHRREDDCSAIECYMEEYG-VTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPT 510

Query: 541 SFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLP 581
                SLN+AR++ ++Y   D         +  I SLL + + 
Sbjct: 511 EVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIA 553
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.7
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.51
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 80.5
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-162  Score=1334.30  Aligned_cols=530  Identities=33%  Similarity=0.530  Sum_probs=490.8

Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHhhcCCCCcccchhHHHHHHHhCCccchHHHHHH
Q 007889           41 KNGNINDSIGVSAPLKHVTYPCEHRSFNNDDIHIDHAKKLDAVKHILIRVGDDDPFEGLAMIDTVQRLGIDYYFQDEIEQ  120 (586)
Q Consensus        41 ~r~~~~~~ps~W~~d~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~d~~~~L~lID~lqrLGi~~hFe~EI~~  120 (586)
                      .||+||||||+| ||+|+++++++.  . +.+.+++++||++||+||....+ |++++|+|||+||||||+|||++||++
T Consensus        21 ~R~~~~~~ps~W-~~~fl~~~~~~~--~-~~~~~~~e~Lk~eVr~~l~~~~~-~~~~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           21 MRPKADFQPSIW-GDLFLNCPDKNI--D-AETEKRHQQLKEEVRKMIVAPMA-NSTQKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             ----CCCCCCTT-TTTTTSCCC-----C-HHHHHHHHHHHHHHHHHHHSCCS-SHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             CCCCCCCCcccc-ccccccCCCchh--h-HHHHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            499999999999 888887732331  3 44566778999999999974335 899999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCchhhhhHHhhhhhhcCccccccccccccccccccccccccchHHHhhHhhhcccccCCchHHH
Q 007889          121 ILQRQSIVFSNHGDRHNDLQEVALRFRLLRQQGYYVSPDVFNNFRNKEGKSKQNISGDINGLMSLYEASQLSIVGEDVLD  200 (586)
Q Consensus       121 ~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvF~~F~d~~g~F~~~l~~dv~glL~LYeAs~l~~~gE~iLd  200 (586)
                      +|++||+. . . ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+|||
T Consensus        96 ~L~~i~~~-~-~-~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLd  172 (554)
T 3g4d_A           96 ELENIYHN-N-N-DAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD  172 (554)
T ss_dssp             HHHHHHHS-C-C-CTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             HHHHHHhc-c-C-CCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHH
Confidence            99999986 2 1 1236999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCChHHHHHHHccCcccCCcHH--HhhhhhhhccCCcccchHhHHHHHhhchHHHhhhhHHH
Q 007889          201 EAGDFSVNLLSEYATHLADYDLAGLVKHLLLHPYRKSLSS--ARNFFHGNFQGNEYVWILDLKELANMDFKLVQSLHQKE  278 (586)
Q Consensus       201 eA~~Ft~~~L~~~~~~~~~~~L~~~V~~aL~~P~~~~l~r--ar~yI~~~Y~~~~~~~n~~lLelAklDFn~~Q~~hq~E  278 (586)
                      ||+.||++||++.+.++ +++|+++|+|||++|||+++||  ||+|| ++|+++ +++|++||||||||||+||++||+|
T Consensus       173 eA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI-~~Y~~~-~~~n~~lLelAkldFn~~Q~~hq~E  249 (554)
T 3g4d_A          173 EAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYL-SVYQDI-ESHNKALLEFAKIDFNMLQFLHRKE  249 (554)
T ss_dssp             HHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHH-HHHHSS-TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHH-HHhCcC-ccccHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999988776 7889999999999999999999  99999 999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHHhhhccccCCHHHHHHHHHHHhhc
Q 007889          279 IVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRW  358 (586)
Q Consensus       279 l~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rW  358 (586)
                      |++++||||++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+||
T Consensus       250 l~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RW  329 (554)
T 3g4d_A          250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERW  329 (554)
T ss_dssp             HHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccch
Q 007889          359 DLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSG  438 (586)
Q Consensus       359 D~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EAkW~~~g~vPtleEYl~~~~~S~g  438 (586)
                      |++++++||+|||+||.+|+++++|++.++.+++|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|
T Consensus       330 D~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg  409 (554)
T 3g4d_A          330 DIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG  409 (554)
T ss_dssp             CGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSC
T ss_pred             CccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeeh
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCchhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCCchhhhhHhhcCCCCCHHHHHHHHH
Q 007889          439 VHLGLVHIFFLLGHGITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHAM  518 (586)
Q Consensus       439 ~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v~n~V~cyMke~~g~S~EeA~~~i~  518 (586)
                      +++++++++++||+.+|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++
T Consensus       410 ~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~-GvSeEeA~~~i~  488 (554)
T 3g4d_A          410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEY-GVTAQEAYDVFN  488 (554)
T ss_dssp             HHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHH-TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhc-CCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHHHhhccccccC
Q 007889          519 DKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYIKSLLFDNLPT  582 (586)
Q Consensus       519 ~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i~~ll~~pi~~  582 (586)
                      +||+++||+||++|++++++|++|+++++|+||++++||+++||||.|  .||++|++||++|||+
T Consensus       489 ~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          489 KHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999988999999999999999999999999999998  6999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-114
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-110
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-44
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-43
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-41
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 8e-28
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  340 bits (874), Expect = e-114
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 4/323 (1%)

Query: 259 DLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSL 318
            + ELA ++F ++Q+ HQ+E+  +S+WW  L   +KL F RD+ ++ + W++  F     
Sbjct: 4   LIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQH 63

Query: 319 SWQRIELTKPISFIYIIDDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALN 378
            +QR      I    +IDDI+D+YG LD L LFT+   RWD   I +LP  M++C+  ++
Sbjct: 64  GYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVH 123

Query: 379 DITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGQLPKAEEYLKNGIVSSG 438
           +  ++ +  + KEHG+  +  LRK+   L  A+  EAKW+ SG  P  +EYL    +S  
Sbjct: 124 NYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVA 183

Query: 439 VHLGLVHIFFLLGHGITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSY 497
               +   +F   +      V   +     I+     ILRL DDLG++  E   G+    
Sbjct: 184 SPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKT 243

Query: 498 IYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMY 557
           I  YM E  + + E+A +H    I +AWK +N    +  PF       + NI R+   +Y
Sbjct: 244 IQCYMKET-NASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIY 302

Query: 558 SYDDNQRLP--RLEEYIKSLLFD 578
            + D   +   +  E+I  LLF+
Sbjct: 303 LHGDGFGVQHSKTYEHIAGLLFE 325
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.95
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.28
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3e-97  Score=773.36  Aligned_cols=325  Identities=30%  Similarity=0.552  Sum_probs=306.3

Q ss_pred             chHhHHHHHhhchHHHhhhhHHHHHHHHHHHHHhCCcccchhhhchhhHHHHhhhcccCCCCCchhhHHhcchhhHHHHH
Q 007889          256 WILDLKELANMDFKLVQSLHQKEIVQISKWWKELGLAKKLEFARDQPLKWYMWSMACFTDPSLSWQRIELTKPISFIYII  335 (586)
Q Consensus       256 ~n~~lLelAklDFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~vi  335 (586)
                      +|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhccccCCHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Q 007889          336 DDIFDIYGALDVLTLFTEAINRWDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEA  415 (586)
Q Consensus       336 DD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~~~~~~~~~~~lk~~w~~~~~a~l~EA  415 (586)
                      ||+||+|||+||++.||+||+|||+++++.||+|||.||.+|+++++|++.++.+.+|++++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~Ea  160 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA  160 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHhhccccchhHHHHHHHHHHhcCCCc-hhHHhhcccCchHHHHHHHHHHHhcCcccchhhccCCCC
Q 007889          416 KWFASGQLPKAEEYLKNGIVSSGVHLGLVHIFFLLGHGIT-SETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGND  494 (586)
Q Consensus       416 kW~~~g~vPtleEYl~~~~~S~g~~~ll~~~~~~~G~~l~-~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~kkE~~rG~v  494 (586)
                      +|+++||+||+||||+||.+|+|+++++++++++||+.++ +++++|+.++|++++++++|+||+|||+||++|++||++
T Consensus       161 kW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~  240 (328)
T d1n1ba2         161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CC
T ss_pred             HHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCc
Confidence            9999999999999999999999999999999999998766 557999999999999999999999999999999999999


Q ss_pred             chhhhhHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhHhhhccceeccCCCCChh--hHHHHH
Q 007889          495 GSYIYYYMMEHQDVTAEDAQKHAMDKISDAWKRLNQECLSPNPFSASFTRASLNIARMVPLMYSYDDNQRLP--RLEEYI  572 (586)
Q Consensus       495 ~n~V~cyMke~~g~S~EeA~~~i~~~i~~~wK~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~--~~k~~i  572 (586)
                      +|+|+|||+|+ |+|+|+|+++++++|+++||++|+++++++++|++|+++++|+||+++++|+++||||+|  .+|++|
T Consensus       241 ~s~v~cymke~-~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k~~I  319 (328)
T d1n1ba2         241 PKTIQCYMKET-NASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHI  319 (328)
T ss_dssp             CCHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHH
T ss_pred             chHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence            99999999999 999999999999999999999999999999999999999999999999999999999998  599999


Q ss_pred             Hhhcccccc
Q 007889          573 KSLLFDNLP  581 (586)
Q Consensus       573 ~~ll~~pi~  581 (586)
                      ++|||+||.
T Consensus       320 ~~ll~ePvs  328 (328)
T d1n1ba2         320 AGLLFEPYA  328 (328)
T ss_dssp             HHHHTSCCC
T ss_pred             HHHhccCCC
Confidence            999999983
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure