Citrus Sinensis ID: 007897

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
MSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPHDHLE
cEEEccccccEEEEECcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccEEcccCEECcHHHHHHHHHHcccccEEEEEEccccccEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEEEEcEEEEEECccccEEEEEEcccccCCccccccccccccccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccc
MSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISV**************YAAMF***R******
xxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPHDHLE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cyclic nucleotide-gated ion channel 2 Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and calcium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Could also transport lithium, cesium and rubium and displays a strong selectivity against sodium. Seems to directly participate in pathogen-induced calcium influx. May function in homeostasis, re-establishing ionic balance after defense action and/or other stimuli. Could mediate the initiation of the developmentally regulated cell death programs.confidentO65718

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2PTM, chain A
Confidence level:very confident
Coverage over the Query: 321-521
View the alignment between query and template
View the model in PyMOL
Template: 3BEH, chain A
Confidence level:very confident
Coverage over the Query: 262-323,352-356,387-389
View the alignment between query and template
View the model in PyMOL
Template: 3DKW, chain A
Confidence level:confident
Coverage over the Query: 388-547
View the alignment between query and template
View the model in PyMOL
Template: 2R9R, chain B
Confidence level:confident
Coverage over the Query: 29-59,77-182,219-223,261-325
View the alignment between query and template
View the model in PyMOL