Citrus Sinensis ID: 007897
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| O65718 | 726 | Cyclic nucleotide-gated i | yes | no | 1.0 | 0.805 | 0.814 | 0.0 | |
| Q94AS9 | 694 | Cyclic nucleotide-gated i | no | no | 0.974 | 0.821 | 0.505 | 1e-171 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.958 | 0.772 | 0.376 | 1e-110 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.924 | 0.724 | 0.380 | 1e-107 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.916 | 0.747 | 0.375 | 1e-107 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.936 | 0.747 | 0.371 | 1e-106 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.902 | 0.701 | 0.374 | 1e-106 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.911 | 0.722 | 0.375 | 1e-106 | |
| Q8L7Z0 | 720 | Probable cyclic nucleotid | no | no | 0.929 | 0.755 | 0.374 | 1e-105 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.957 | 0.804 | 0.362 | 1e-103 |
| >sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/593 (81%), Positives = 528/593 (89%), Gaps = 8/593 (1%)
Query: 1 MSLAVDPLFFYALSIGRGGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSR 59
M+LAVDPLFFYALSIGR P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSR
Sbjct: 134 MALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSR 193
Query: 60 ESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIM 119
ESLVVGCGKLVWDPRAIASHY RSL GFWFDV VILPVPQAVFWLVVPKLIREEK+K+IM
Sbjct: 194 ESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILPVPQAVFWLVVPKLIREEKVKLIM 253
Query: 120 TILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYV 179
TILL+IFLFQFLPK+YH I LMRRMQKVTGYIFGTIWWGF LNLIAYFIASHVAGGCWYV
Sbjct: 254 TILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYV 313
Query: 180 LAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTC-GGNSTTTVRKSLCL 238
LAIQRVASC+RQQC R NCNL L+C EEVCYQF+ P+ +G C GN T+ V K +CL
Sbjct: 314 LAIQRVASCIRQQCMRTGNCNLSLACKEEVCYQFVSPTSTVGYPCLSGNLTSVVNKPMCL 373
Query: 239 DVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICI 298
D NGPF YGIY+WALPVISSNS+AVKILYPIFWGLMTLSTF NDLEPTS+WLEV+FSI +
Sbjct: 374 DSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVM 433
Query: 299 VLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQR 358
VLSGL+LFTLLIGNIQVFLHAVMAKKRKMQ+RCRDMEWWM+RRQLPSRLRQRVR +ERQR
Sbjct: 434 VLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQR 493
Query: 359 WATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYS 418
W +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF +DDLILDNICDR +P V+S
Sbjct: 494 WNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFS 553
Query: 419 KDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID 478
KDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+D
Sbjct: 554 KDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLD 613
Query: 479 RLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI 538
RLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI
Sbjct: 614 RLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI 673
Query: 539 QFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 585
Q AWRR R RTRG I V+EN EGN RL++YAAMFMSIRPHDHLE
Sbjct: 674 QMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726
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Acts as cyclic nucleotide-gated ion channel. Permeable to potassium and calcium in a cyclic nucleotide-dependent fashion (cAMP or cGMP). Could also transport lithium, cesium and rubium and displays a strong selectivity against sodium. Seems to directly participate in pathogen-induced calcium influx. May function in homeostasis, re-establishing ionic balance after defense action and/or other stimuli. Could mediate the initiation of the developmentally regulated cell death programs. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AS9|CNGC4_ARATH Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 255584317 | 715 | Cyclic nucleotide-gated ion channel, put | 0.998 | 0.816 | 0.887 | 0.0 | |
| 356568702 | 714 | PREDICTED: cyclic nucleotide-gated ion c | 0.996 | 0.816 | 0.875 | 0.0 | |
| 60459560 | 715 | CNGC2 [Gossypium hirsutum] | 0.998 | 0.816 | 0.875 | 0.0 | |
| 356526469 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.996 | 0.811 | 0.866 | 0.0 | |
| 357502127 | 710 | Cyclic nucleotide-gated ion channel [Med | 0.993 | 0.818 | 0.876 | 0.0 | |
| 449447404 | 684 | PREDICTED: cyclic nucleotide-gated ion c | 0.994 | 0.850 | 0.823 | 0.0 | |
| 169635151 | 712 | putative cyclic nucleotide-gated cation | 1.0 | 0.821 | 0.781 | 0.0 | |
| 297811679 | 726 | hypothetical protein ARALYDRAFT_488387 [ | 1.0 | 0.805 | 0.807 | 0.0 | |
| 312282005 | 722 | unnamed protein product [Thellungiella h | 0.994 | 0.806 | 0.814 | 0.0 | |
| 15242291 | 726 | cyclic nucleotide-gated ion channel 2 [A | 1.0 | 0.805 | 0.814 | 0.0 |
| >gi|255584317|ref|XP_002532894.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223527328|gb|EEF29474.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/585 (88%), Positives = 553/585 (94%), Gaps = 1/585 (0%)
Query: 1 MSLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRE 60
M+LA+DPLFFY+LSIGRGGAPCLYMDG LAAIVTVLRTCVDA+HL HLWLQFRLAYVSRE
Sbjct: 132 MALAIDPLFFYSLSIGRGGAPCLYMDGGLAAIVTVLRTCVDAIHLCHLWLQFRLAYVSRE 191
Query: 61 SLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMT 120
SLVVGCGKLVWD RAIASHYVRSLKGFWFD FVILPVPQAVFWL++PKLIREE+IK+IMT
Sbjct: 192 SLVVGCGKLVWDARAIASHYVRSLKGFWFDAFVILPVPQAVFWLILPKLIREEQIKLIMT 251
Query: 121 ILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVL 180
ILL+IFLFQFLPKVYH IYLMR+MQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVL
Sbjct: 252 ILLLIFLFQFLPKVYHCIYLMRKMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVL 311
Query: 181 AIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDV 240
AIQR ASCLRQQC R+ NC+L+LSCSEEVCYQ LVP+G IGN+CGGNST VRK +CLD+
Sbjct: 312 AIQRAASCLRQQCQRRPNCDLFLSCSEEVCYQLLVPTGTIGNSCGGNSTAAVRKPMCLDI 371
Query: 241 NGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVL 300
GPF YGIY+ ALPVI+SNS+AVKILYPIFWGLMTLSTFGNDLEPTS+WLEV+FSICIVL
Sbjct: 372 AGPFKYGIYKTALPVIASNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVL 431
Query: 301 SGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWA 360
SGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRH+ERQ+W
Sbjct: 432 SGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQKWT 491
Query: 361 TMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKD 420
MGGEDEMELIKDLPEGLRR IKRYLCLDLIK+VPLFHNLDDLILDNICDRV+PLV+SKD
Sbjct: 492 AMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKEVPLFHNLDDLILDNICDRVKPLVFSKD 551
Query: 421 EKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRL 480
EKIIREGDPV R+VFIVRGRIKR QSLSKGMVATSVLEPGG+LGDELLSWCLRRPFIDR
Sbjct: 552 EKIIREGDPVQRIVFIVRGRIKRSQSLSKGMVATSVLEPGGYLGDELLSWCLRRPFIDRR 611
Query: 481 PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQF 540
PASSATFVC+ES EAFGLDA +LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQF
Sbjct: 612 PASSATFVCLESTEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQF 671
Query: 541 AWRRYRMRTRGPVISVTENGEGNESNRLMRYAAMFMSIRPHDHLE 585
AWRRYRMRTRGPVI VT G + RL++YAAMFMSIRPHDHLE
Sbjct: 672 AWRRYRMRTRGPVIPVTTENGGTD-RRLLQYAAMFMSIRPHDHLE 715
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568702|ref|XP_003552549.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|60459560|gb|AAX18166.2| CNGC2 [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|356526469|ref|XP_003531840.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357502127|ref|XP_003621352.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] gi|355496367|gb|AES77570.1| Cyclic nucleotide-gated ion channel [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449447404|ref|XP_004141458.1| PREDICTED: cyclic nucleotide-gated ion channel 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|169635151|gb|ACA58352.1| putative cyclic nucleotide-gated cation channel [Sandersonia aurantiaca] | Back alignment and taxonomy information |
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| >gi|297811679|ref|XP_002873723.1| hypothetical protein ARALYDRAFT_488387 [Arabidopsis lyrata subsp. lyrata] gi|297319560|gb|EFH49982.1| hypothetical protein ARALYDRAFT_488387 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|312282005|dbj|BAJ33868.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
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| >gi|15242291|ref|NP_197045.1| cyclic nucleotide-gated ion channel 2 [Arabidopsis thaliana] gi|38502856|sp|O65718.1|CNGC2_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 2; Short=AtCNGC2; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 2; AltName: Full=Protein DEFENSE NO DEATH 1 gi|9255920|gb|AAF86351.1|AF280939_1 DND1 [Arabidopsis thaliana] gi|3096949|emb|CAA76179.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|3894399|gb|AAC78613.1| cyclic nucleotide-gated cation channel [Arabidopsis thaliana] gi|9755796|emb|CAC01740.1| cyclic nucleotide-gated cation channel [Arabidopsis thaliana] gi|332004775|gb|AED92158.1| cyclic nucleotide-gated ion channel 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| TAIR|locus:2180867 | 726 | DND1 "AT5G15410" [Arabidopsis | 1.0 | 0.805 | 0.762 | 7.3e-249 | |
| TAIR|locus:2162605 | 694 | CNGC4 "AT5G54250" [Arabidopsis | 0.974 | 0.821 | 0.470 | 4.5e-146 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.957 | 0.771 | 0.351 | 3.5e-91 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.924 | 0.724 | 0.349 | 7.5e-89 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.943 | 0.753 | 0.343 | 9.6e-89 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.916 | 0.747 | 0.348 | 4.1e-88 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.936 | 0.761 | 0.346 | 8.6e-88 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.936 | 0.742 | 0.343 | 3.7e-87 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.909 | 0.706 | 0.344 | 1.8e-85 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.958 | 0.806 | 0.337 | 3e-85 |
| TAIR|locus:2180867 DND1 "AT5G15410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2397 (848.8 bits), Expect = 7.3e-249, P = 7.3e-249
Identities = 452/593 (76%), Positives = 494/593 (83%)
Query: 1 MSLAVDPLFFYALSIGRGGAP-CLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSR 59
M+LAVDPLFFYALSIGR P CLYMDGA AA+VTVLRTC+DAVHL+H+WLQFRLAYVSR
Sbjct: 134 MALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSR 193
Query: 60 ESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIM 119
ESLVVGCGKLVWDPRAIASHY RSL GFWFDV VILPVPQAVFWLVVPKLIREEK+K+IM
Sbjct: 194 ESLVVGCGKLVWDPRAIASHYARSLTGFWFDVIVILPVPQAVFWLVVPKLIREEKVKLIM 253
Query: 120 TXXXXXXXXXXXPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYV 179
T PK+YH I LMRRMQKVTGYIFGTIWWGF LNLIAYFIASHVAGGCWYV
Sbjct: 254 TILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYV 313
Query: 180 LAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTC-GGNSTTTVRKSLCL 238
LAIQRVASC+RQQC R NCNL L+C EEVCYQF+ P+ +G C GN T+ V K +CL
Sbjct: 314 LAIQRVASCIRQQCMRTGNCNLSLACKEEVCYQFVSPTSTVGYPCLSGNLTSVVNKPMCL 373
Query: 239 DVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICI 298
D NGPF YGIY+WALPVISSNS+AVKILYPIFWGLMTLSTF NDLEPTS+WLEV+FSI +
Sbjct: 374 DSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVM 433
Query: 299 VLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQR 358
VLSGL+LFTLLIGNIQVFLHAVMAKKRKMQ+RCRDMEWWM +ERQR
Sbjct: 434 VLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQR 493
Query: 359 WATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYS 418
W +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF CDR +P V+S
Sbjct: 494 WNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFS 553
Query: 419 KDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID 478
KDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+D
Sbjct: 554 KDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLD 613
Query: 479 RLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI 538
RLP SSATFVC+E+IEAF L +++LRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI
Sbjct: 614 RLPPSSATFVCLENIEAFSLGSEDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNI 673
Query: 539 QFAWRRYRMRTRGPVIS-----VTENG-EGNESNRLMRYAAMFMSIRPHDHLE 585
Q AWRR R RTRG I V+EN EGN RL++YAAMFMSIRPHDHLE
Sbjct: 674 QMAWRRRRKRTRGENIGGSMSPVSENSIEGNSERRLLQYAAMFMSIRPHDHLE 726
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| TAIR|locus:2162605 CNGC4 "AT5G54250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65718 | CNGC2_ARATH | No assigned EC number | 0.8145 | 1.0 | 0.8057 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.6__1521__AT5G15410.1 | annotation not avaliable (726 aa) | ||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 5e-13 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 2e-09 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 6e-08 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 2e-07 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 2e-07 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
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Score = 65.4 bits (160), Expect = 5e-13
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 396 LFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKG-MVAT 454
LF LDD L+ + D + + E IIR+GDP + ++ G ++ + G
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 455 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYI 506
L PG G+ L + P SAT + E L + R +
Sbjct: 61 GFLGPGDLFGELAL--------LGNGP-RSATVRALTDSELLVLPRSDFRRL 103
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.58 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.53 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.46 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.41 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.39 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.39 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.39 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.39 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.39 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.36 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.34 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.26 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.25 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.25 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.25 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.21 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.16 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.16 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.04 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.0 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.98 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.9 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.53 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.49 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.19 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.05 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.76 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.42 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.39 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.36 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.07 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.99 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.4 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.34 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.1 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.15 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 94.02 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 91.44 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 91.17 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 90.69 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 83.69 | |
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 81.85 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-100 Score=819.59 Aligned_cols=488 Identities=44% Similarity=0.775 Sum_probs=439.7
Q ss_pred ceecccccceeEeecCCCCceEEecCcchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhh
Q 007897 2 SLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYV 81 (585)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl 81 (585)
++++||+|||++.+..+ ..| +|+....+++++|.++|++|++||++||+|||++++| -++|.||++||+||+
T Consensus 91 a~~v~P~~f~f~~~~~~-~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s-----~elV~dpk~IA~rYl 162 (727)
T KOG0498|consen 91 AAFVDPLFFYFLLIDDE-RKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSS-----YELVDDPKKIAKRYL 162 (727)
T ss_pred HHHhccceeeEEecccc-ccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCC-----ceeeeCHHHHHHHHH
Confidence 68999999999999885 888 9999999999999999999999999999999999975 379999999999999
Q ss_pred ccccCeeehhhhccCcceeEEEEecccccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHH
Q 007897 82 RSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGL 161 (585)
Q Consensus 82 k~~~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|+ ||++|++|++|+++++.|..+. +.........+..+.+++||+|++|+++++.++++..++..+++|+++++
T Consensus 163 ~t--wFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ 236 (727)
T KOG0498|consen 163 KT--WFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAAL 236 (727)
T ss_pred hh--hHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99 9999999999999999987761 11122222345556667899999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCC
Q 007897 162 NLIAYFIASHVAGGCWYVLAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVN 241 (585)
Q Consensus 162 ~l~~~~l~~H~~aC~w~~i~~~~~~~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~ 241 (585)
++++|++++||+||+||++|.++.++||+++| |+..... .-.|. +
T Consensus 237 ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~t------------------------------w~~~l~~---~~~~~--~ 281 (727)
T KOG0498|consen 237 LLSVYLLASHWAGCIWYLIAIERPASCPRKAT------------------------------WLGSLGR---LLSCY--N 281 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCccccc------------------------------ccccccc---ccccC--c
Confidence 99999999999999999999999887887642 2111000 00121 1
Q ss_pred CCccccccccccccccCchhHHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 242 GPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVM 321 (585)
Q Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 321 (585)
..|+||+|.++ .+|++|+||+++||||+|||+.+++|..|++|+|++|++|+++||++||||++++++++
T Consensus 282 ~~~~fg~~s~~----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 282 LSFTFGIYSLA----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred ccccccchhHH----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 23667776654 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCc
Q 007897 322 AKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLD 401 (585)
Q Consensus 322 ~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~ 401 (585)
++.++|+.|++++++||++|+||++||+||++|++|+|..++|+||+++|++||.+||+||++|+|.++++++|+|+++|
T Consensus 352 sR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md 431 (727)
T KOG0498|consen 352 SRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMD 431 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCC
Q 007897 402 DLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLP 481 (585)
Q Consensus 402 ~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p 481 (585)
++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...+.+|..+...|++||+|||..++||+. .|
T Consensus 432 ~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~------~p 505 (727)
T KOG0498|consen 432 DGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD------LP 505 (727)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc------CC
Confidence 999999999999999999999999999999999999999999987655666699999999999888888863 45
Q ss_pred cceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccCCCccc
Q 007897 482 ASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISV 556 (585)
Q Consensus 482 ~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 556 (585)
+++||+|+|.|+++.|+++||++++++|| .++++++++++|+|+++|++|+++.+|.+|++|.+|+....++.
T Consensus 506 -~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 506 -QTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred -CCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhh
Confidence 58999999999999999999999999999 89999999999999999999999999999999999987554444
|
|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 5e-19 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 5e-05 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-58
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 19/209 (9%)
Query: 319 AVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGL 378
A+ + R+ + + + +E +M+ R+LPS LR ++ Y R+ DE + +++ E +
Sbjct: 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESI 60
Query: 379 RRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVR 438
R+ + Y C DL+ VP F D + + + V+ + +I+EG RM FI +
Sbjct: 61 RQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQ 120
Query: 439 GRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGL 498
G + V + L G + G+ L RR A+ C F L
Sbjct: 121 G---IVDIIMSDGVIATSLSDGSYFGEICLLTRERR---------VASVKCETYCTLFSL 168
Query: 499 DAKNLRYITDHFR------YKFANERLKR 521
++ + D F + A RL R
Sbjct: 169 SVQHFNQVLDEFPAMRKTMEEIAVRRLTR 197
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238 | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 100.0 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.98 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.81 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.81 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.77 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.73 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.73 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.73 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.72 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.71 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.7 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.7 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.7 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.68 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.67 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.67 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.66 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.66 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.65 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.64 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.64 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.63 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.62 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.62 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.62 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.62 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.61 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.61 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.6 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.57 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.56 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.55 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.55 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.54 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.54 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.54 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.53 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.52 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.52 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.52 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.52 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.51 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.51 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.5 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.48 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.48 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.47 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.45 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.45 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.44 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.41 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.39 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.37 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.31 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.29 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.27 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.18 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.18 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.14 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.12 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.01 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.99 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.97 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.75 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.74 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.66 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.53 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.53 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.52 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.4 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.38 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.37 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.36 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.09 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 97.59 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 95.6 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 93.93 |
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=266.65 Aligned_cols=200 Identities=21% Similarity=0.375 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhc
Q 007897 314 QVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKK 393 (585)
Q Consensus 314 ~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 393 (585)
++|++++++++.+|+++++.+++||+++++|++|+.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578899999999999999999999999999999999999999999998899999999999999999999999998887 8
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhccc
Q 007897 394 VPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLR 473 (585)
Q Consensus 394 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~ 473 (585)
+|+|++++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. +| ..+..+++|++||+.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~----- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSL----- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCC-----
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHh-----
Confidence 9999999999999999999999999999999999999999999999999985 45 34899999999999855
Q ss_pred CCccCCC--CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 007897 474 RPFIDRL--PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSS 528 (585)
Q Consensus 474 ~~~~~~~--p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~ 528 (585)
+.+. | ++++++|.++|+++.|++++|.++++++| .+....++..++..+.
T Consensus 151 ---~~~~~~~-~~~~v~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 151 ---TKEQVIK-TNANVKALTYCDLQYISLKGLREVLRLYP-EYAQKFVSEIQHDLTY 202 (212)
T ss_dssp ---SSSSCCB-BCSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHEEE
T ss_pred ---ccCCCCC-cceEEEEcccEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHhhcc
Confidence 4555 5 89999999999999999999999999999 5666665555554443
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 585 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 2e-16 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 4e-14 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 3e-11 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 1e-08 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 1e-08 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 3e-07 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 3e-07 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 3e-07 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 6e-06 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.001 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 0.003 | |
| d1r3jc_ | 103 | f.14.1.1 (C:) Potassium channel protein {Streptomy | 0.004 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 74.2 bits (181), Expect = 2e-16
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 389 DLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK--RCQS 446
+++VPLF N+D+ +LD IC+R++P ++++ ++REGDPV M+FI+RGR++
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65
Query: 447 LSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYI 506
G S+L+ G F GDELL+W L LP+S+ T + +EAF L A L+++
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 507 TDHFR 511
FR
Sbjct: 126 ASQFR 130
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.82 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.78 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.74 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.73 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.72 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.71 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.71 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.71 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.65 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.64 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.64 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.6 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.59 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.58 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.45 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.36 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.17 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.02 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.73 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 97.01 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 95.0 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 94.35 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 85.91 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.8e-31 Score=248.72 Aligned_cols=177 Identities=23% Similarity=0.398 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCC
Q 007897 321 MAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNL 400 (585)
Q Consensus 321 ~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~ 400 (585)
|+++.+|+++++.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.++++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 36788999999999999999999999999999999999976 78899999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCC
Q 007897 401 DDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRL 480 (585)
Q Consensus 401 ~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~ 480 (585)
++.++..|+..+++..|.|||+|+++||.++.+|||.+|.|+++.. ++. ...+++|++||+.+++ .+.
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~--~~~--~~~l~~G~~fGe~~~~--------~~~ 147 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK--GNK--EMKLSDGSYFGEICLL--------TRG 147 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC---CCC--EEEECTTCEECHHHHH--------HCS
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecC--Ccc--eeeeccceeeeeeecc--------CCC
Confidence 9999999999999999999999999999999999999999999752 333 4679999999998764 455
Q ss_pred CcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 481 PASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 481 p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
| ++++++|.++|+++.|++++|.+++++||
T Consensus 148 ~-~~~~~~a~~~~~l~~l~~~~f~~ll~~~p 177 (193)
T d1q3ea_ 148 R-RTASVRADTYCRLYSLSVDNFNEVLEEYP 177 (193)
T ss_dssp B-CSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred c-ccccceecCceEEEEEeHHHHHHHHHHCH
Confidence 5 89999999999999999999999999999
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
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| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
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| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
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| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
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| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
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| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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