Citrus Sinensis ID: 007901

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
Protein Sequence
MDYSTEYQQYYQQQYQQQQPPPAAAAEMQAYYAYDHQQKQYQYYPSQDYPTASYPQQFHQESTSTHPPGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRSVRPQFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEccHHHHHHHHccHHHHHHHHHHccccccccHHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHccHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccccccccccHHHHHHcHHHHHHccccccccccccHHHcccHHHccccccccccccccccccccccccccEEEEEEEcccccccccEEEEccccccccccccccccccccccccccEEccccccEcccccccccccccccEEEccccHHHHHHccccccccccccccHcccHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDYSTEYQQYYQQQYqqqqpppaAAAEMQAYYAYdhqqkqyqyypsqdyptasypqqfhqeststhppgvpippdpthfpnhhnahfplgigigieqpsnltlfsgtaaaaqrsvrpqfgqsacrgggrkggkpfrrggrlvgrgrghgaisnstpsaavpgqtsssipgqvpgaptrppppmawcelcrvDCNTLEILEQHkngkrhkrnlrthaDLQNLNkciagqqniqmpnsgsqpevsqpekveecrekqpleslpsqtllgnasnetemQKNTvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkgvipLICElcnvkcesqvvfdshlvgkkHLANVKRFHGHRALYGEAalqslypasfnslSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAqipglvgmvapapapgssqetqyqhdfrtqrsmatteegskntvMVEAEDQQqsiatdlespetvgietkeknaslpqdkkiisslenpdntasaskcevasggeavqqqhgddlvdseneqdlelhneedaKEDTVEALQLQNNE
Flexible Loop (DISEMBL)
MDYSTEYQQYYQQQYQQQQPPPAAAAEMQAYYAYDHQQKQYQYYPSQDYPTASYPQQFHQESTSTHPPGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRsvrpqfgqsacrgggrkggkpfrrggrlvgrgrghgaisnstpsaavpgqtsssIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEqhkngkrhkrnlRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECRekqpleslpsqtllgnasnetemqkntvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQqsiatdlespetvgietkeknaslpqdKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELhneedakedTVEALQLQNNE
Low Complexity Region (SEG)
MDYSTEyqqyyqqqyqqqqpppaaaaemqayyayDHQQKQYQYYPSQDYPTASYPQQFHQESTSTHPPGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRSVRPQFGQSACrgggrkggkpfrrggrlvgrgrghgAISNSTPSAAVPGQTSSSIpgqvpgaptrppppMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDsrgcgskrkmrggrggkymrTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSqaqaqaqaPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered region (IsUnstruct)
*****************************AYYAYDHQQKQYQYY***************************************NAHFPLGIGIGIEQPSNLTLFS*****************************************************************************MAWCELCRVDCNTLEILEQ**********************CI**********************************************************************************************************GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPG**********************************************************************************************************************************************
Disordered Region (DISOPRED)
***STEYQQYYQQ*********AAAAEMQAYYAYDHQQKQYQYYPSQDYPT************************************************************************************************************************************AWCELCRVDCNTLEILEQHKNG***********************************************************************************************************************************ICELCNVKCESQVVFDSHL**************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************************EMQAYYAYDHQQKQYQYYPSQDYPTASYPQ***********PGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRSVRPQFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGAIS************************TRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM*************************SLPSQTLLGNASNE*************************************GGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPA***********QHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLE*****************************DSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered Region (DISPRO)
*DYSTEYQQYYQQQYQQQQPPPAAAAEMQAYYAYDHQQKQYQYYPSQDYPTASYPQQFHQESTSTHPPGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRSV************************************************************PTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKC*********************************************************************************************************PKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVA***************DFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLE**E*VGI*****NAS*P*DKKIISSL*N********************************EQDL*LHNEEDAKEDTVEALQLQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYSTEYQQYYQQQYQQQQPPPAAAAEMQAYYAYDHQQKQYQYYPSQDYPTASYPQQFHQESTSTHPPGVPIPPDPTHFPNHHNAHFPLGIGIGIEQPSNLTLFSGTAAAAQRSVRPQFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
297734533	679	unnamed protein product [Vitis vinifera]	0.570	0.491	0.465	8e-60
147819081	628	hypothetical protein VITISV_000640 [Viti	0.526	0.490	0.480	9e-59
255576046	725	conserved hypothetical protein [Ricinus	0.432	0.348	0.430	2e-47
356495137	446	PREDICTED: uncharacterized protein LOC10	0.482	0.632	0.429	6e-44
147812148	618	hypothetical protein VITISV_009309 [Viti	0.396	0.375	0.430	2e-42
224141481	289	predicted protein [Populus trichocarpa]	0.223	0.453	0.287	4e-10
225457301	424	PREDICTED: uncharacterized protein LOC10	0.290	0.400	0.288	1e-09
413955253	396	hypothetical protein ZEAMMB73_384238 [Ze	0.143	0.212	0.402	1e-08
226491021	396	uncharacterized protein LOC100272823 [Ze	0.143	0.212	0.402	1e-08
226507156	516	uncharacterized protein LOC100277947 [Ze	0.158	0.180	0.335	3e-08

>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 226/376 (60%), Gaps = 42/376 (11%)

Query: 174 GAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM 233
           G P    P MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QM
Sbjct: 111 GNPFWRSPCMAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQM 170

Query: 234 PNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASN---ETEMQKNTVDS--VKEPQR 288
           P S  +P++ Q E+V    +KQ     PSQ    N +    +TE +K+ V +   +E +R
Sbjct: 171 PISDFKPQLIQSERVGGSEDKQ-----PSQGTGANGTEKEQQTEAEKSEVSAQPTEEQER 225

Query: 289 KSR-DQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCES 347
           K+R D   + G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCES
Sbjct: 226 KARMDHFQAPGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCES 277

Query: 348 QVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQ 406
           QVVFDSHL GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q
Sbjct: 278 QVVFDSHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQ 336

Query: 407 VVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDF 466
            + AQ + Y + Q QA   APG  +E                 P PAP S+ ETQ +   
Sbjct: 337 GLPAQPMPY-MQQGQAPGMAPGPASE-----------------PEPAPVSALETQDKEGT 378

Query: 467 RTQRSMATTEEGSKNTVMVEAEDQQQ--SIATDLESPETVGIETKEKNASLPQDKKIISS 524
           +T  S AT+E G +NTV  EA  Q Q   IA++  S  +       + ++  + K +I  
Sbjct: 379 KTVESQATSEAGGQNTVTAEANSQLQPDIIASEASSGVSTNTTIVSETSAF-EGKDVIPP 437

Query: 525 LENPDNTASASKCEVA 540
           +++PD   S +K + A
Sbjct: 438 IDDPDVAPSENKVKGA 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819081|emb|CAN65350.1| hypothetical protein VITISV_000640 [Vitis vinifera]

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 200/337 (59%), Gaps = 29/337 (8%)

Query: 174 GAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM 233
           G P    P MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QM
Sbjct: 269 GNPFWRSPCMAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQM 328

Query: 234 PNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSR-D 292
           P S  +P++ Q E+V    + QP +   +         E E  + +    +E +RK+R D
Sbjct: 329 PISDFKPQLIQSERVGGSEDXQPSQGTGANGTEKEQQTEAEKSEVSAQPTEEQERKARMD 388

Query: 293 QPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFD 352
              + G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCESQVVFD
Sbjct: 389 HFQAPGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCESQVVFD 440

Query: 353 SHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQVVLAQ 411
           SHL GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q + AQ
Sbjct: 441 SHLAGKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQGLPAQ 499

Query: 412 LLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRS 471
            +   + Q QA   APGL +E                 P PAP S+ ETQ +   +T  S
Sbjct: 500 PMP-XMQQGQAPGMAPGLASE-----------------PEPAPVSALETQDKEGTKTVES 541

Query: 472 MATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIET 508
            AT+E G +NTV  EA  Q Q      E+   V   T
Sbjct: 542 QATSEAGGQNTVTAEANSQLQPXXIASEAXSGVSTNT 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576046|ref|XP_002528918.1| conserved hypothetical protein [Ricinus communis] gi|223531620|gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]

 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/279 (43%), Positives = 162/279 (58%), Gaps = 26/279 (9%)

Query: 125 RGGGRKGGKPFRRGGRLVGRGRGHGAISNST---PSAA------VPGQTSSSIPGQVPGA 175
           RG G   GK   R      R + HGA S S+   PSAA      V  + + S P     A
Sbjct: 385 RGRGHGKGKAHSR------RFKPHGAASTSSYPEPSAANEDPAAVAVEAAQSAPAPEKLA 438

Query: 176 PTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPN 235
           P   P  +AWCELCRVDC ++E+LEQHKNGKRHK+NL    +L+   K     +N Q   
Sbjct: 439 PKHQPAQIAWCELCRVDCTSVEVLEQHKNGKRHKKNLLRIEELKKAVKFGEEIKNDQETI 498

Query: 236 SGSQPEVSQ-PEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQP 294
             ++PE  Q P+  ++  E++  E+L  +          ++Q NT +  + P  +  DQ 
Sbjct: 499 INTKPEDYQEPQVAQDGEEQKTAENLTVEATNDEHIMVRDLQDNTGEKSEVPVEELSDQQ 558

Query: 295 ---------DSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKC 345
                    D+R  G KRK++GGRGGK M+T+E   RRP+EPPKPK V+PLIC+LCNVKC
Sbjct: 559 GMKPKMNLFDNRRRGMKRKIKGGRGGKRMKTSETH-RRPVEPPKPKVVVPLICDLCNVKC 617

Query: 346 ESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYP 384
           +++ V D HL GKKH+A +KRF GH+A+YG   LQ+LYP
Sbjct: 618 DTREVLDRHLSGKKHIAKLKRFEGHQAIYGPTGLQALYP 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495137|ref|XP_003516437.1| PREDICTED: uncharacterized protein LOC100794880 [Glycine max]

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 132/307 (42%), Positives = 187/307 (60%), Gaps = 25/307 (8%)

Query: 160 VPGQTSSSIPGQVPGAPTRPPPP-MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 218
           +P  +S  +   VP     P PP    CE+C+V+CN+ EILEQHK GK+H++N+R H +L
Sbjct: 118 IPFHSSGPVVSNVPARVQPPVPPRKVCCEICKVECNSPEILEQHKVGKKHQKNMRVHEEL 177

Query: 219 QNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREK-QPLESLPSQTLLGNASNETEMQK 277
           Q  N  I  QQ+ ++P S       QP++V+E  +   P E++ S  ++ N   E ++Q 
Sbjct: 178 QRRN-AINEQQSGEIPTSQLN-LTDQPKEVQESEKNGHPTENMGSGVIINNHEEEIQLQN 235

Query: 278 NTVDSVKE-----PQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKG 332
           N V ++ E     P+ K+ D   +RG G KRK +GG+GGKYMRTN+G   +P+EP +   
Sbjct: 236 N-VGNMSEVPAEVPEGKTVDNSAARGRGLKRKKKGGKGGKYMRTNDGS--KPVEPAQ--- 289

Query: 333 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG----HRALYGE-AALQSLYPASF 387
            +   CELC+VKCESQVV+ SH+ GKKHL+ ++R        +AL G  + LQ++YP   
Sbjct: 290 TMSFRCELCDVKCESQVVYQSHMTGKKHLSKLRRASSGVGQQQALSGALSGLQAVYPPDI 349

Query: 388 NSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGM 447
           N+LS+++  QVQQG NDPQV+LAQLL  VLSQAQ  A AP   A     +A+QIP    M
Sbjct: 350 NALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQVPATAPVTGA-----IASQIPAPTSM 404

Query: 448 VAPAPAP 454
             P+  P
Sbjct: 405 AGPSYEP 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812148|emb|CAN77034.1| hypothetical protein VITISV_009309 [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/258 (43%), Positives = 148/258 (57%), Gaps = 26/258 (10%)

Query: 145 GRGHGAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKN 204
           G   G +   +  A V  +TS S       AP   P  +AWCELCRVDC +LEILEQHKN
Sbjct: 81  GEPSGVLPEESGEAVVLAETSPSTVAPGDSAPNWQPSQVAWCELCRVDCTSLEILEQHKN 140

Query: 205 GKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREK--QPLESLPS 262
           GKRHK+NL+   +L++ N       N  +  S  QPE++Q  + E   E    P ++LPS
Sbjct: 141 GKRHKKNLQRIEELKSANLTGTEIPNEPVGESKFQPEIAQEGEEESDEEGEENPEKNLPS 200

Query: 263 QTLLGNASNETEM---QKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEG 319
           + +    +NE EM   QKN  D V++P++   ++PDS+    K +M      ++      
Sbjct: 201 EAI----ANENEMVGEQKN--DIVEQPEKPMEERPDSQV--GKPRMEHFDNWRHGMKRRM 252

Query: 320 -------------GPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR 366
                         PRR IEPPKPK VIPLIC+LCNVKC++Q VFD HL GKKH+A +KR
Sbjct: 253 RGGRGGKRMKMFEAPRRSIEPPKPKVVIPLICDLCNVKCDTQEVFDRHLSGKKHIAKLKR 312

Query: 367 FHGHRALYGEAALQSLYP 384
           F GH+A+YG   LQ+LYP
Sbjct: 313 FEGHQAMYGPMGLQALYP 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141481|ref|XP_002324100.1| predicted protein [Populus trichocarpa] gi|222867102|gb|EEF04233.1| predicted protein [Populus trichocarpa]

 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 57/188 (30%)

Query: 184 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVS 243
           A+CE+C+VDCN+ ++L+QHK GK+HK+N      L+ L    AG       ++GS   V 
Sbjct: 154 AYCEVCKVDCNSKDVLDQHKLGKKHKKN------LEKLQAAAAGCS----VSAGSNNPVI 203

Query: 244 QPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKR 303
            P++             PS++  GN     + +K   + +++   K R           R
Sbjct: 204 GPQEN------------PSKSENGNGQ---KSKKKAAEPLEDLDSKRR-----------R 237

Query: 304 KMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLAN 363
            + GG     +R                     +C  CNV C S  VF+SHL G+KH A 
Sbjct: 238 ILEGGAAADAVR---------------------VCSFCNVVCNSDTVFNSHLAGQKHAAM 276

Query: 364 VKRFHGHR 371
           +K+  G R
Sbjct: 277 LKKLAGIR 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457301|ref|XP_002281421.1| PREDICTED: uncharacterized protein LOC100251937 [Vitis vinifera] gi|297733915|emb|CBI15162.3| unnamed protein product [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)

Query: 186 CELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQP 245
           CE+C +DCN+ ++LE+H +GK+H RNL+ H +   ++  I+ + +I M N+GS   V Q 
Sbjct: 132 CEVCNIDCNSKDVLEKHISGKKHNRNLQIHTN--QVSTTISTKDSIGM-NTGSL--VGQI 186

Query: 246 EKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKM 305
             +   R      +   Q+L+       E      DSV+           +  C S+   
Sbjct: 187 GSISHQRILGSAGAAAGQSLVAKRLKLVE-GGAVADSVRTCTI------CNVACNSQVVF 239

Query: 306 RGGRGGKYMRTNEG-GPRRPI-----------EPPKPKGVIPLICELCNVKCESQVVFDS 353
           +    GK      G  P+  +            P KPK V    CE+C + C S  VF  
Sbjct: 240 QKHLTGKKHAAQVGLRPQHLVVQPHSNGIWSKAPKKPKFVQSAWCEVCKINCNSSDVFTK 299

Query: 354 HLVGKKHLANVKRF 367
           H++GKKHL N+++ 
Sbjct: 300 HILGKKHLKNLEKL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955253|gb|AFW87902.1| hypothetical protein ZEAMMB73_384238 [Zea mays]

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 156 PSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH 215
           P+  V   TSSS  G V         P AWC++C V CN+ EILEQHKNGKRHKR+++  
Sbjct: 59  PAHMVQATTSSSTRGTVV--------PAAWCDICHVGCNSKEILEQHKNGKRHKRSVQRM 110

Query: 216 ADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEK 247
            D+  L        ++  P+S    EV  P +
Sbjct: 111 QDMARLQGTTPAIADMGAPSSSQLAEVEGPSR 142

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491021|ref|NP_001140748.1| uncharacterized protein LOC100272823 [Zea mays] gi|194700900|gb|ACF84534.1| unknown [Zea mays]

 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 156 PSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH 215
           P+  V   TSSS  G V         P AWC++C V CN+ EILEQHKNGKRHKR+++  
Sbjct: 59  PAHMVQATTSSSTRGTVV--------PAAWCDICHVGCNSKEILEQHKNGKRHKRSVQRM 110

Query: 216 ADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEK 247
            D+  L        ++  P+S    EV  P +
Sbjct: 111 QDMARLQGTTPAIADMGAPSSSQLAEVEGPSR 142

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226507156|ref|NP_001144857.1| uncharacterized protein LOC100277947 [Zea mays] gi|195647960|gb|ACG43448.1| hypothetical protein [Zea mays]

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 50/143 (34%)

Query: 126 GGGRKGGKPFRRGGRLV-----------------GRGRGHG------------------- 149
           GG  +GG+P   GGR +                 GRGRGHG                   
Sbjct: 123 GGVSRGGEPSHGGGRGLSPMYHPLTWNAGITSPCGRGRGHGNKSSDRQLAVGASSGSSAS 182

Query: 150 ---AISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGK 206
               ++   P+  V   T +   G V         P AWC+LCRV CN+ EILEQHKNGK
Sbjct: 183 EAQPVTVCAPAHVVQATTINFTRGTVV--------PAAWCDLCRVGCNSKEILEQHKNGK 234

Query: 207 RHKRN---LRTHADLQNLNKCIA 226
           +HKR    ++  A LQ +   IA
Sbjct: 235 KHKRTVQRMQNFARLQGMTPAIA 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009596001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (446 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	585
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	4e-07
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	1e-06
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	1e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.003

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 336 LICELCNVKCESQVVFDSHLVGKKH 360
             CELCNV   S+    SHL GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 338 CELCNVKCESQVVFDSHLVGKKHLANVKRF 367
           C+LCNV    ++  ++HL GKKH  NVK+ 
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 185 WCELCRVDCNTLEILEQHKNGKRH 208
           +CELC V   +   L+ H  GK+H
Sbjct: 2   YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 185 WCELCRVDCNTLEILEQHKNGKRHKRNLR 213
           +C+LC V       +E H  GK+HK+N++
Sbjct: 5   YCKLCNVTFTDEISVEAHLKGKKHKKNVK 33

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 338 CELCNVKCESQVVFDSHLVGKKH 360
           C  C+   +S+   ++HL  KKH
Sbjct: 4   CVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	585
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.54
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.36
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.36
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.06
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.04
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.66
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.24
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.05
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	96.95
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.64
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	96.48
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.29
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	96.15
KOG3032	264	consensus Uncharacterized conserved protein [Funct	95.97
PLN02748	468	tRNA dimethylallyltransferase	95.82
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	94.93
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	94.83
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.81
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.41
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	93.9
PF14968	336	CCDC84: Coiled coil protein 84	93.54
PLN02748	468	tRNA dimethylallyltransferase	93.54
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	93.48
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.46
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	92.94
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	92.57
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	92.26
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	92.23
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.93
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	90.97
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	90.7
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	90.67
KOG3032	264	consensus Uncharacterized conserved protein [Funct	90.39
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	90.06
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	90.03
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	89.98
KOG4722	672	consensus Zn-finger protein [General function pred	89.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	89.49
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	89.33
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	88.74
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	88.46
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	87.57
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	86.23
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	85.64
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.13
smart00355	26	ZnF_C2H2 zinc finger.	85.12
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	84.6
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	82.88
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	82.52

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.54  E-value=6.3e-08  Score=68.23  Aligned_cols=32  Identities=44%  Similarity=0.837  Sum_probs=30.6

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhh
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKR  366 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKk  366 (585)
                      .|+|++|+++|++...+.+|++||||+++|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            59999999999999999999999999999986

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.36  E-value=2.1e-07  Score=61.69  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=24.5

Q ss_pred             EeeeecccccCCHHHHHhhhhhhhH
Q 007901          336 LICELCNVKCESQVVFDSHLVGKKH  360 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~GKKH  360 (585)
                      |+|++|++.|+++..|++|++|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.36  E-value=2.1e-07  Score=65.53  Aligned_cols=33  Identities=33%  Similarity=0.666  Sum_probs=30.5

Q ss_pred             cccccccccccCCHHHHHHHhcCcchHHHHHHH
Q 007901          183 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  215 (585)
Q Consensus       183 ~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraL  215 (585)
                      .++|++|+++|+++..+.+|+.||+|+++++++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~~   35 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR   35 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHcC
Confidence            479999999999999999999999999998763

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.06  E-value=1.7e-06  Score=57.32  Aligned_cols=25  Identities=28%  Similarity=0.679  Sum_probs=24.1

Q ss_pred             ccccccccccCCHHHHHHHhcCcch
Q 007901          184 AWCELCRVDCNTLEILEQHKNGKRH  208 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy~GKKH  208 (585)
                      ++|++|+++|+++.++++|+.||||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            5899999999999999999999998

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.04  E-value=1.8e-06  Score=58.99  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHH
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHL  361 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHq  361 (585)
                      .|+|.+|++.|+++..|+.|++||+|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            389999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.66  E-value=1.7e-05  Score=54.18  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=25.1

Q ss_pred             ccccccccccCCHHHHHHHhcCcchH
Q 007901          184 AWCELCRVDCNTLEILEQHKNGKRHK  209 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy~GKKHK  209 (585)
                      ++|.+|++.|+++.++++|+.||+|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            69999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.24  E-value=0.0002  Score=69.65  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             CCCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          332 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       332 ~~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      ....|||.+|+..+-.-.+|-.|||||||+.+|--+
T Consensus        72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             ccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            457899999999999999999999999999998543

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.05  E-value=0.00051  Score=51.60  Aligned_cols=33  Identities=27%  Similarity=0.593  Sum_probs=21.6

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHHH
Q 007901          183 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTH  215 (585)
Q Consensus       183 ~~yCdVCkVsc--NSpsqaqsHy~GKKHKKNLraL  215 (585)
                      -.||+.|+++|  +++..-..|..|+||+.|+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            36999999999  5667879999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.95  E-value=0.00052  Score=51.58  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=21.5

Q ss_pred             CEeeeeccccc--CCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~c--NSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .+||+.|++++  ++...-+.|..|+||+.++++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            58999999999  5666779999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.64  E-value=0.0014  Score=74.20  Aligned_cols=41  Identities=20%  Similarity=0.553  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCCcccccccccccCCHHHHHHHhcCcchHHHH
Q 007901          171 QVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNL  212 (585)
Q Consensus       171 ~~~~ap~~~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNL  212 (585)
                      .+|++++ +.-+.+||++|+++|+.++.+..|+.|.||+++.
T Consensus       182 dR~K~~~-~laqL~~~kw~k~~a~G~qs~re~lr~~r~l~kr  222 (816)
T KOG3792|consen  182 DRPKAPP-RLAQLHYCKWCKISAAGPQTYREHLRGQKHLKKE  222 (816)
T ss_pred             ccccCch-HHHHhhhhHHHHHhccccHHHHHHHHHHHHHHhc
Confidence            5566666 5678899999999999999999999999999987

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=96.48  E-value=0.0016  Score=60.64  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=35.4

Q ss_pred             CCCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          332 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       332 ~~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      ..+.|||-.|...|.+..+|..|+++|.|+++||++.+
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            45799999999999999999999999999999999963

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.29  E-value=0.0025  Score=62.30  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=32.0

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHHHH
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA  216 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLq  216 (585)
                      ...+||+||+..|--...+..|++||+|++|+.-+.
T Consensus        73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            456799999999999999999999999999987554

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=96.15  E-value=0.0023  Score=67.00  Aligned_cols=38  Identities=26%  Similarity=0.576  Sum_probs=34.4

Q ss_pred             CCCCCCccccccccccc-CCHHHHHHHhcCcchHHHHHH
Q 007901          177 TRPPPPMAWCELCRVDC-NTLEILEQHKNGKRHKRNLRT  214 (585)
Q Consensus       177 ~~~p~~~~yCdVCkVsc-NSpsqaqsHy~GKKHKKNLra  214 (585)
                      -|.+.+..||++|+++| +++.....|-.||||+-+|++
T Consensus         4 YWkS~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~K   42 (336)
T KOG0150|consen    4 YWKSQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAK   42 (336)
T ss_pred             hhhhccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHH
Confidence            48888999999999999 788888999999999999874

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.01  Score=60.34  Aligned_cols=59  Identities=27%  Similarity=0.439  Sum_probs=46.1

Q ss_pred             CCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhc--ccccccccccccccCCCCCCCCCc
Q 007901          333 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH--GHRALYGEAALQSLYPASFNSLSS  392 (585)
Q Consensus       333 ~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~--g~q~l~g~~glQ~~~Ppn~~a~sn  392 (585)
                      .+.+.|-|||+-.- +..+..|.+||||..++-++.  +.+.....++..+..|+.+|+.+.
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~Kv~k~~~T~~p~~p~spn~kts   93 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGSKVAKTRPTKIPALPKSPNSKTS   93 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhcccccCcCccCccCCCCCCcccc
Confidence            46899999999999 999999999999999988776  222222225667778888888774

>PLN02748 tRNA dimethylallyltransferase

Probab=95.82  E-value=0.0047  Score=67.37  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=32.7

Q ss_pred             CCEeeeeccc-ccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          334 IPLICELCNV-KCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       334 ~~l~CeLCNV-~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      ..|.|++|+. .++++..++.|++||+|+++|++...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            5678999998 89999999999999999999998754

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=94.93  E-value=0.013  Score=54.67  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=36.1

Q ss_pred             CCCCcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          179 PPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       179 ~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      +--..+||-.|...|.+..++..|..+|.|+|+|+.|...
T Consensus        53 PG~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~   92 (129)
T KOG3408|consen   53 PGGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREV   92 (129)
T ss_pred             CCCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccC
Confidence            3356789999999999999999999999999999999853

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=94.83  E-value=0.016  Score=56.22  Aligned_cols=34  Identities=24%  Similarity=0.586  Sum_probs=29.9

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHHHH
Q 007901          183 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHA  216 (585)
Q Consensus       183 ~~yCdVCkVsc--NSpsqaqsHy~GKKHKKNLraLq  216 (585)
                      -.||+.|+..+  .|.++-++|+.|+||++|++...
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY   38 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYY   38 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHH
Confidence            35899999876  59999999999999999998554

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.017  Score=63.40  Aligned_cols=37  Identities=30%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcccc
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  371 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g~q  371 (585)
                      .+||-+||.+|-|+-+|..|.+.|||.++|.++.+++
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqem  328 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEM  328 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3999999999999999999999999999998885443

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.02  Score=62.88  Aligned_cols=34  Identities=26%  Similarity=0.579  Sum_probs=32.7

Q ss_pred             ccccccccccCCHHHHHHHhcCcchHHHHHHHHh
Q 007901          184 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      +||-+|+.+|-|+-++..|-+.|||++||+.|..
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999874

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=93.90  E-value=0.032  Score=55.66  Aligned_cols=35  Identities=29%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          333 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       333 ~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .+.|.|.||+-.-+++..|-.|..||||+.+|-+.
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarr   85 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARR   85 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHH
Confidence            47899999999999999999999999999998765

>PF14968 CCDC84: Coiled coil protein 84

Probab=93.54  E-value=0.045  Score=57.97  Aligned_cols=31  Identities=23%  Similarity=0.578  Sum_probs=26.6

Q ss_pred             cccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          185 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       185 yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ||.||+.++..   -+-|.-+++|+++|+.+-..
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~r   31 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSR   31 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHHH
Confidence            89999999876   67899999999999987543

>PLN02748 tRNA dimethylallyltransferase

Probab=93.54  E-value=0.051  Score=59.54  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=32.5

Q ss_pred             Cccccccccc-ccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          182 PMAWCELCRV-DCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       182 ~~~yCdVCkV-scNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ....|++|+. .++++.+-+.|+.||+|+++++++...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            3446999998 799999999999999999999988653

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=93.48  E-value=0.046  Score=58.77  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=32.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      ..++|.+||..+-|+..+..||+.|||..+++++..
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            368999999999999999999999999999988643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.46  E-value=0.022  Score=63.69  Aligned_cols=12  Identities=17%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             ccCCCCCCCccC
Q 007901          114 SVRPQFGQSACR  125 (585)
Q Consensus       114 ~~~~~~g~~~~~  125 (585)
                      -..||.|....+
T Consensus       514 ~y~~p~~k~ss~  525 (556)
T PF05918_consen  514 QYVPPSGKYSSN  525 (556)
T ss_dssp             ------------
T ss_pred             ccCCCCCCCcCC
Confidence            345666554433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=92.94  E-value=0.041  Score=59.04  Aligned_cols=36  Identities=25%  Similarity=0.561  Sum_probs=33.0

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHHHHh
Q 007901          182 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      +.+||.+|..+|....+++.|+.||+|.|++++.+.
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            457999999999999999999999999999987765

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=92.57  E-value=0.082  Score=48.85  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=35.4

Q ss_pred             CCCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhccc
Q 007901          332 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGH  370 (585)
Q Consensus       332 ~~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g~  370 (585)
                      ..+.+||.-|...|.++..|-.|.+||-|+.++|++.+-
T Consensus        52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             CCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            357899999999999999999999999999999998553

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=92.26  E-value=0.1  Score=32.98  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=17.7

Q ss_pred             EeeeecccccCCHHHHHhhhh
Q 007901          336 LICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      |.|.+|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            679999999999999999985

...

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=92.23  E-value=0.072  Score=51.76  Aligned_cols=33  Identities=33%  Similarity=0.603  Sum_probs=28.0

Q ss_pred             CEeeeeccccc--CCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~c--NSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .|||+-|+...  .|..+=+.|+.|+||++++|--
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            48999999555  5777999999999999998654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.93  E-value=0.083  Score=43.23  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.5

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHh
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVK  365 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLK  365 (585)
                      .+.|.+|+..|.+...|..||+.+.|++...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5999999999999999999999999988654

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=90.97  E-value=0.18  Score=46.62  Aligned_cols=46  Identities=30%  Similarity=0.441  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          173 PGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       173 ~~ap~~~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      |-.|.-+--..+||--|..-|.++..|..|..||-|+++++.|..-
T Consensus        45 p~Dp~lPGlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          45 PYDPELPGLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             CCCCCCCCCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            3344545567789999999999999999999999999999999864

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=90.70  E-value=0.17  Score=50.52  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             CCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          333 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       333 ~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      .+.|.|.||+-.--++..+..|+.||||+.++.+.+.
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~   87 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE   87 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence            4689999999999999999999999999999877633

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=90.67  E-value=0.12  Score=41.45  Aligned_cols=30  Identities=30%  Similarity=0.535  Sum_probs=24.8

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHH
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLR  213 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLr  213 (585)
                      +...||+.|.+.|.   .|..|+.++||++=.+
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            35679999999997   6888999999997433

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=0.35  Score=49.65  Aligned_cols=39  Identities=18%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             CCCCcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          179 PPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       179 ~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      -+.....|-||++-.- +..-..|.+||||+-++..|+..
T Consensus        31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~   69 (264)
T KOG3032|consen   31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSR   69 (264)
T ss_pred             CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhh
Confidence            4566789999999998 99999999999999999999843

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.06  E-value=0.24  Score=32.10  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             EeeeecccccCCHHHHHhhhhh
Q 007901          336 LICELCNVKCESQVVFDSHLVG  357 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~G  357 (585)
                      |.|..|+..|++...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=90.03  E-value=0.13  Score=41.34  Aligned_cols=30  Identities=30%  Similarity=0.538  Sum_probs=25.4

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .-||+.|.+.|.   .|..|+.++||++=.+..
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~   34 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAENN   34 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHcCc
Confidence            469999999997   789999999998866543

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.98  E-value=0.15  Score=40.80  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=25.1

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhh
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKR  366 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKk  366 (585)
                      .-||+.|.+.|.   .|..|+.+++|++-...
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~~   33 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFAEN   33 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHHcC
Confidence            469999999998   59999999999886644

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=89.90  E-value=0.16  Score=55.91  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=31.2

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      ....|.||||-.+|++.|-+|.+|+||+--|+.+
T Consensus       492 rkkqcslcnvlissevylfshvkgrkhqqal~e~  525 (672)
T KOG4722|consen  492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNEL  525 (672)
T ss_pred             hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence            3568999999999999999999999999988876

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=89.49  E-value=0.25  Score=33.20  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             EeeeecccccCCHHHHHhhhh
Q 007901          336 LICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      |.|..|+..|++...|..|++
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            789999999999999999993

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=89.33  E-value=0.2  Score=50.26  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          182 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ...-|.||.-.-+++..+..|..||||+-||.+-.+.
T Consensus        52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~   88 (222)
T KOG0227|consen   52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK   88 (222)
T ss_pred             cceeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence            4456999999999999999999999999999876654

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.74  E-value=0.27  Score=39.30  Aligned_cols=29  Identities=31%  Similarity=0.692  Sum_probs=24.6

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHH
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNL  212 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNL  212 (585)
                      ....||+.|.+.|.+   |..|+.+++|++=.
T Consensus         3 ~k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    3 KKPGYCENCRVKYDD---LEEHIQSEKHRKFA   31 (49)
T ss_pred             CCCccCccccchhhh---HHHHhCCHHHHHHH
Confidence            356799999999985   88999999999654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=88.46  E-value=0.21  Score=53.89  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      .+||..|..+|....+|..|+.||.|.+..+....
T Consensus       238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            59999999999999999999999999998877544

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=87.57  E-value=0.29  Score=51.89  Aligned_cols=34  Identities=24%  Similarity=0.433  Sum_probs=29.6

Q ss_pred             CCEeeeeccccc-CCHHHHHhhhhhhhHHHHHhhh
Q 007901          334 IPLICELCNVKC-ESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       334 ~~l~CeLCNV~c-NSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      ..+||++|.|++ |....-+.|=.||+|+.+|.+.
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            468999999987 5677899999999999988665

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=86.23  E-value=0.49  Score=31.76  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             ccccccccccCCHHHHHHHh
Q 007901          184 AWCELCRVDCNTLEILEQHK  203 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy  203 (585)
                      +.|++|+..|.+...|..|.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~   21 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHK   21 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHH
T ss_pred             CCCCccCCccCChhHHHHHh
Confidence            47999999999999999998

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=85.64  E-value=1  Score=53.73  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=13.4

Q ss_pred             CCCCCccCCCCcCCCCcccCCCccccCCcCCCC
Q 007901          118 QFGQSACRGGGRKGGKPFRRGGRLVGRGRGHGA  150 (585)
Q Consensus       118 ~~g~~~~~g~~~~~g~~~~~~gr~~g~grg~~~  150 (585)
                      |-|-.+++||..|||+..+|||.|||.|+++|+
T Consensus      1246 pgggyrgsGGfgrgggrgagggGgfg~G~~Gg~ 1278 (1282)
T KOG0921|consen 1246 PGGGYRGSGGFGRGGGRGAGGGGGFGGGGRGGN 1278 (1282)
T ss_pred             CCCCccCCCCcCCCCCCCCCCCCCCCCCCcccc
Confidence            333333334444444444444444444444433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=85.13  E-value=0.27  Score=55.28  Aligned_cols=12  Identities=67%  Similarity=1.099  Sum_probs=0.0

Q ss_pred             CCCccccCCcCC
Q 007901          137 RGGRLVGRGRGH  148 (585)
Q Consensus       137 ~~gr~~g~grg~  148 (585)
                      |||||+|+|||+
T Consensus       544 ggg~grg~~r~~  555 (556)
T PF05918_consen  544 GGGRGRGRGRGF  555 (556)
T ss_dssp             ------------
T ss_pred             CCCCCCcccccC
Confidence            666777777764

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=85.12  E-value=0.51  Score=29.74  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             EeeeecccccCCHHHHHhhhhhhhHH
Q 007901          336 LICELCNVKCESQVVFDSHLVGKKHL  361 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~GKKHq  361 (585)
                      +.|..|...|++...|..|+.  +|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~--~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR--THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH--Hhc
Confidence            469999999999999999997  553

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=84.60  E-value=0.68  Score=46.36  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      -..+-|.+|+-.--++..+..|..||||+-|+.+-++.
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~e   88 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEE   88 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHH
Confidence            34567999999999999999999999999999877554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=82.88  E-value=0.58  Score=38.30  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=26.6

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHH
Q 007901          182 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLR  213 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLr  213 (585)
                      ..+.|.+|+..|.+...+..|...+.|++...
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            35899999999999999999999999997544

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=82.52  E-value=0.94  Score=28.46  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=16.8

Q ss_pred             ccccccccccCCHHHHHHHhc
Q 007901          184 AWCELCRVDCNTLEILEQHKN  204 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy~  204 (585)
                      +-|++|+..|.+...+..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            359999999999999999974

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	585
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.63
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.41
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.41
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.1
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.0
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	96.85
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.53
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.13
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.79
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.63
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	92.61
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.59
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	87.14
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	87.0
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.74
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	86.64
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	86.46
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	85.97
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.93
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	85.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.81
1ard_A	29	Yeast transcription factor ADR1; transcription reg	85.13
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.04
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	84.65
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	83.9
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.75
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	83.42
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	83.17
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.16
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	83.0
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	82.13
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	82.04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	81.88
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	81.59
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	81.28
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.05
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	81.03
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.93
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	80.65
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.6
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.54
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	80.44
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.41
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.37
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.37
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	80.36
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	80.34
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	80.33
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.19
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.03
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	80.97
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	80.53

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.63  E-value=2.6e-16  Score=139.18  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHHHHh
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      ...++|.+|++.|+|+.++..||.||||+++|+.+..
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            3558999999999999999999999999999998765

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.41  E-value=1.2e-07  Score=83.89  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=34.6

Q ss_pred             CCCCcccccccccccCCHHHHHHHhcCcchHHHHHHHH
Q 007901          179 PPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA  216 (585)
Q Consensus       179 ~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLq  216 (585)
                      .....+||++|+++|+|+.+|.+||.||+|++++++++
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            34677899999999999999999999999999999874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.41  E-value=8e-05  Score=67.23  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             CCCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          332 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       332 ~~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      ....|+|.+|+..|.+...|..|+++|+|+++|+.+..
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            34579999999999999999999999999999999853

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.10  E-value=0.00019  Score=64.74  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=34.6

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHHHHh
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      ...+||.+|+..|.+...|..|+.+|+|+++++.|..
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            5678999999999999999999999999999999864

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.00  E-value=0.00033  Score=59.00  Aligned_cols=33  Identities=33%  Similarity=0.667  Sum_probs=29.9

Q ss_pred             CEeeeeccccc--CCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~c--NSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .|||+-|++.+  +|..+...|++|+||+.++++.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            59999999999  6788899999999999998876

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=96.85  E-value=0.00053  Score=57.75  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=31.4

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          183 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       183 ~~yCdVCkVsc--NSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ..||+.|++.+  .|+.+...|..|+||++|++..-..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~   40 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCK   40 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHH
Confidence            46999999999  6788899999999999999976643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.53  E-value=0.0057  Score=64.18  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             CCEeeeeccc------ccCCHHHHHhhhhhhhHHHHHhhhc
Q 007901          334 IPLICELCNV------KCESQVVFDSHLVGKKHLANVKRFH  368 (585)
Q Consensus       334 ~~l~CeLCNV------~cNSe~~~qsHL~GKKHqkKLKkl~  368 (585)
                      ..+.|++|+.      .+.++..++.|++||+|+++||+..
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~  399 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNT  399 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHH
Confidence            3588999998      8999999999999999999998763

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.13  E-value=0.0054  Score=49.00  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=32.6

Q ss_pred             EeeeecccccCCHHHHHhhhhhhhHHHHHhhhcccc
Q 007901          336 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  371 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g~q  371 (585)
                      ..|++|+|.++....++.|+-.+.|..+||.+-+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~q   49 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   49 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHHHhh
Confidence            489999999999999999999999999999875543

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.01  Score=62.39  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=31.5

Q ss_pred             CCcccccccccccCCHHHHHHHhcCcchHHHHHHH
Q 007901          181 PPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  215 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraL  215 (585)
                      ....||..|+..|.++.++..|+.||||+|++++.
T Consensus       290 ~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             CcCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            34689999999999999999999999999988653

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.012  Score=61.85  Aligned_cols=34  Identities=35%  Similarity=0.597  Sum_probs=30.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      ..+||..|+..|.++.+|..||.||||.+.+.+.
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            4699999999999999999999999999987553

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=92.61  E-value=0.046  Score=57.44  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             ccccccccc------ccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          183 MAWCELCRV------DCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       183 ~~yCdVCkV------scNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ...|++|+.      .+.++..-+.|+.||+|++++++....
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            357999998      899999999999999999999987654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=87.59  E-value=0.33  Score=30.82  Aligned_cols=23  Identities=30%  Similarity=0.532  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            35999999999999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=87.14  E-value=0.36  Score=29.27  Aligned_cols=22  Identities=18%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.+...|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=87.00  E-value=0.32  Score=36.07  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             CCEeeeecccccCCHHHHHhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHL  355 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL  355 (585)
                      ..++|+.|++.|++...|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4689999999999999999995

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.74  E-value=0.39  Score=29.07  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5899999999999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=86.64  E-value=0.42  Score=30.56  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=86.46  E-value=0.31  Score=29.17  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EeeeecccccCCHHHHHhhhh
Q 007901          336 LICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      |.|.+|+..|.+...|..|+.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            679999999999999999984

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.19  E-value=0.44  Score=30.56  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            36999999999999999999984

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=85.97  E-value=0.41  Score=29.30  Aligned_cols=22  Identities=32%  Similarity=0.789  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.93  E-value=0.45  Score=30.72  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            36999999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=85.88  E-value=0.38  Score=28.93  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4889999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.81  E-value=0.59  Score=30.16  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=85.13  E-value=0.34  Score=29.27  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.04  E-value=0.52  Score=30.18  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=20.7

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            46899999999999999999974

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=84.65  E-value=0.4  Score=29.06  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4889999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.90  E-value=0.56  Score=28.26  Aligned_cols=22  Identities=23%  Similarity=0.458  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|..|+..|.....|..|+.
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.75  E-value=0.74  Score=29.66  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            36999999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=83.42  E-value=0.61  Score=30.83  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=83.17  E-value=0.6  Score=30.20  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            35899999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.16  E-value=0.58  Score=30.26  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999975

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=83.00  E-value=0.26  Score=29.59  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4789999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.13  E-value=0.82  Score=31.08  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            36999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=82.04  E-value=0.86  Score=30.36  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            35999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=81.88  E-value=0.84  Score=30.28  Aligned_cols=23  Identities=17%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            35999999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=81.59  E-value=0.76  Score=34.09  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.9

Q ss_pred             CCcccccccccccCCHHHHHHHh
Q 007901          181 PPMAWCELCRVDCNTLEILEQHK  203 (585)
Q Consensus       181 ~~~~yCdVCkVscNSpsqaqsHy  203 (585)
                      ....+|+.|+|+|++-..+..|.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhh
Confidence            34679999999999999999884

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.28  E-value=0.96  Score=30.06  Aligned_cols=23  Identities=13%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            35999999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.18  E-value=0.74  Score=29.86  Aligned_cols=23  Identities=13%  Similarity=0.353  Sum_probs=20.6

Q ss_pred             CCEeeeecccccCCH-HHHHhhhh
Q 007901          334 IPLICELCNVKCESQ-VVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe-~~~qsHL~  356 (585)
                      ..|.|.+|+..|... ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            359999999999999 99999984

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.05  E-value=0.98  Score=30.77  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999984

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=81.03  E-value=0.83  Score=32.26  Aligned_cols=23  Identities=17%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            36999999999999999999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.93  E-value=1  Score=30.60  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            35999999999999999999984

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.65  E-value=0.96  Score=30.79  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            36999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.60  E-value=0.96  Score=30.81  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            35999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.54  E-value=1  Score=30.70  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            35999999999999999999975

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=80.44  E-value=0.81  Score=36.67  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             ccccccccccCCHHHHHHHhcCcchHHHHHHH
Q 007901          184 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  215 (585)
Q Consensus       184 ~yCdVCkVscNSpsqaqsHy~GKKHKKNLraL  215 (585)
                      .-|.+|++.++....++.|+--+.|-.+|+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHH
Confidence            38999999999999999999999999988865

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.41  E-value=0.87  Score=31.25  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            35899999999999999999984

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.37  E-value=1  Score=30.74  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CEECcccCCccCCHhHHHHHHH
Confidence            5999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.37  E-value=0.84  Score=30.50  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            35899999999999999999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.36  E-value=0.98  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            35999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.34  E-value=1  Score=30.62  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=80.33  E-value=0.68  Score=29.92  Aligned_cols=22  Identities=14%  Similarity=0.366  Sum_probs=20.0

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            3789999999999999999984

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=80.19  E-value=1  Score=30.82  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            35999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.03  E-value=0.94  Score=30.15  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             CCEeeeecccccCCHHHHHhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      ..|.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            35999999999999999999984

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=80.97  E-value=0.36  Score=29.36  Aligned_cols=22  Identities=18%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.+...|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            4889999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=80.53  E-value=0.38  Score=29.36  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4789999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	585
d1zu1a2	55	g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF	0.002

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 55

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 338 CELCNVKCESQVVFDSHLVGKKHLANVKR 366
           C +CN+   S VV +SH +GK H+ N++ 
Sbjct: 24  CPVCNMTFSSPVVAESHYIGKTHIKNLRL 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	585
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	99.0
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.79
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.03
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.78
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.76
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.13
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.57
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.21
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	93.68
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.61
d1fu9a_	36	U-shaped transcription factor, different fingers {	88.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	87.83
d1fu9a_	36	U-shaped transcription factor, different fingers {	87.65
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	83.06
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	81.09
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	80.43
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	80.41

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.00  E-value=1.4e-10  Score=90.21  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHhcCcchHHHHHHH
Q 007901          178 RPPPPMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTH  215 (585)
Q Consensus       178 ~~p~~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraL  215 (585)
                      +..+.+.||.||+++|||+.++++||.||+|+|+|+.-
T Consensus        16 ~~~d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          16 DGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCCchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            45578889999999999999999999999999999864

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.79  E-value=1.4e-09  Score=84.53  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=32.3

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhc
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  368 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~  368 (585)
                      ...+|.|||++|||..+.++|+.||+|.++||..+
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            35699999999999999999999999999999764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.5e-07  Score=70.88  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=34.6

Q ss_pred             CCCEeeeecccccCCHHHHHhhhhhhhHHHHHhhhcc
Q 007901          333 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  369 (585)
Q Consensus       333 ~~~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g  369 (585)
                      .+.|||-.|+..|.|+.+|+.|+++|||+++||++..
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            4689999999999999999999999999999999854

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.2e-06  Score=66.77  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHHHHh
Q 007901          182 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      ..+||-+|+..|.|+.+|+.|..+|+|+|+|++|+.
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            457999999999999999999999999999999964

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.76  E-value=5.6e-06  Score=66.83  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             CcccccccccccCCHHHHHHHhcCcchHHHHHHHHhh
Q 007901          182 PMAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL  218 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy~GKKHKKNLraLqa~  218 (585)
                      ...+|+||++.+.|+++..+||.||||++|++.+-.+
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf~~   67 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI   67 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999998775

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.13  E-value=8.8e-05  Score=59.74  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      ..+|.+|++...|+.+-.+|+.||||.+||+..
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999875

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00062  Score=53.27  Aligned_cols=35  Identities=20%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             ccccccccccc--CCHHHHHHHhcCcchHHHHHHHHh
Q 007901          183 MAWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHAD  217 (585)
Q Consensus       183 ~~yCdVCkVsc--NSpsqaqsHy~GKKHKKNLraLqa  217 (585)
                      -.||+.|++.|  +|+++-..|..|+||+.|++..-.
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~   39 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ   39 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHH
Confidence            46999999999  578888999999999999987654

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.001  Score=51.98  Aligned_cols=33  Identities=33%  Similarity=0.667  Sum_probs=29.1

Q ss_pred             CEeeeeccccc--CCHHHHHhhhhhhhHHHHHhhh
Q 007901          335 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  367 (585)
Q Consensus       335 ~l~CeLCNV~c--NSe~~~qsHL~GKKHqkKLKkl  367 (585)
                      .|||+-|++.+  +|..+=..|+.|+||+.+++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            59999999999  4677789999999999999765

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.0068  Score=41.06  Aligned_cols=29  Identities=24%  Similarity=0.540  Sum_probs=26.4

Q ss_pred             CEeeeecccccCCHHHHHhhhhhhhHHHH
Q 007901          335 PLICELCNVKCESQVVFDSHLVGKKHLAN  363 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~GKKHqkK  363 (585)
                      .|.|.-||..|-....|..||+.|-|.++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~kk   29 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSKK   29 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhccC
Confidence            38999999999999999999999999653

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.015  Score=43.48  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=32.5

Q ss_pred             EeeeecccccCCHHHHHhhhhhhhHHHHHhhhcccc
Q 007901          336 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  371 (585)
Q Consensus       336 l~CeLCNV~cNSe~~~qsHL~GKKHqkKLKkl~g~q  371 (585)
                      --|.+|++..++....+.|+-.|.|.++||..-+.+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~~q   42 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   42 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHHHHhH
Confidence            369999999999999999999999999999875544

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.96  E-value=0.09  Score=37.17  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             CcccccccccccCCHHHHHHHh
Q 007901          182 PMAWCELCRVDCNTLEILEQHK  203 (585)
Q Consensus       182 ~~~yCdVCkVscNSpsqaqsHy  203 (585)
                      ...||..|+|+||+-..+..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            3469999999999999998884

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.83  E-value=0.14  Score=35.40  Aligned_cols=27  Identities=26%  Similarity=0.577  Sum_probs=23.4

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHHH
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHLA  362 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHqk  362 (585)
                      ..|.|.+|+..|+....|..|+  +.|..
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~--r~Ht~   32 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHL--KVHTD   32 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHH--GGGTS
T ss_pred             ccccCCCCCCcccChHHHHHHc--cccCC
Confidence            4699999999999999999998  46643

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.65  E-value=0.11  Score=36.73  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             CCEeeeecccccCCHHHHHhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHL  355 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL  355 (585)
                      ...||..|+|.||+...|..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            4579999999999999999994

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=0.3  Score=33.62  Aligned_cols=24  Identities=17%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             CCEeeeecccccCCHHHHHhhhhh
Q 007901          334 IPLICELCNVKCESQVVFDSHLVG  357 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~G  357 (585)
                      ..|.|++|+..|+....|..|+.-
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHccc
Confidence            469999999999999999999753

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=81.09  E-value=0.27  Score=32.54  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|+....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            4889999999999999999984

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.43  E-value=0.39  Score=31.71  Aligned_cols=22  Identities=18%  Similarity=0.535  Sum_probs=20.4

Q ss_pred             CEeeeecccccCCHHHHHhhhh
Q 007901          335 PLICELCNVKCESQVVFDSHLV  356 (585)
Q Consensus       335 ~l~CeLCNV~cNSe~~~qsHL~  356 (585)
                      .|.|.+|+..|+....|..|+.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            5999999999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.41  E-value=0.38  Score=33.07  Aligned_cols=26  Identities=23%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCEeeeecccccCCHHHHHhhhhhhhHH
Q 007901          334 IPLICELCNVKCESQVVFDSHLVGKKHL  361 (585)
Q Consensus       334 ~~l~CeLCNV~cNSe~~~qsHL~GKKHq  361 (585)
                      ..|.|.+|+..|+....|..|+  |.|+
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~--r~H~   35 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHR--KRHM   35 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHH--GGGT
T ss_pred             cCeEeCCCCCEecCHHHHHHHH--hcCc
Confidence            4699999999999999999998  4664