Citrus Sinensis ID: 007916

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
MESESKRKKESPNTAELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRRDAPPSVLTL
ccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEECcccccccHHHHHHHccccCEEEcccccccccccccccccccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEECcccccccccHHHHHcccccccccEEEcccccccccHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccccccccccccccccccHHHHHcccccccEEEEcccccccHHHHHHHHccccccEEccccccccHHHHHHHHccccccEEEEcccccccccHcccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccccEEEEEccccccccHHHHHHEEEcccccccccccccccc
*****************AVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRRDAPPSVLTL
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MESESKRKKESPNTAELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRRDAPPSVLTL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein TRANSPORT INHIBITOR RESPONSE 1 Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae.probableQ570C0
Transport inhibitor response 1-like protein Os04g0395600 probableQ7XVM8

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2P1M, chain B
Confidence level:very confident
Coverage over the Query: 24-585
View the alignment between query and template
View the model in PyMOL