Citrus Sinensis ID: 007916

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----

MESESKRKKESPNTAELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRRDAPPSVLTL

ccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccHHHHHHcccccccccEEEcccccccccHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccccccccccccccccccHHHHHcccccccEEEEcccccccHHHHHHHHccccccEEccccccccHHHHHHHHccccccEEEEccccccccHHHccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHEEEcccccccccccccccc

ccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEccccccccHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHcccccEEEcccccccccccHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHcccEEEEEEccccHHHHHHHHHHcccHHEEEEHccccHHHHHHHHHHHHcccEEEEEccccccccccccccHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHccHcccEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEcccccccccccEEEc

meseskrkkespntaelavtasfPDEVLEIVLSLLTshrdrssvslvCKDWYRAERWSRTQVFigncysvspeiltrrfpnirsvtlkgkprfsdfnlvppnwgadIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLasnfpnfkllsllscdgfstdGLAAIATHCKnlteldiqengiedssgswlscfpesftslevlnfanltsevNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRapqleelgtgsflqdltarpyadLESAFnncknihtlsglweavplylPALYNSCANLTFLNLSYTALQSGEFAKLvvhcprlrrlwvldtvedkgleavgsncplleelrvfpadpfdeeiihgvteeGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVqncpnfthfrlcimtpglpdyltnepmdeAFGAVVKTCSKLQRlsvsglltdLTFEYIGKYAKNLETLSVAFagrsdrgmqcvlegcpklrkleirdcpfgneaLLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVmkedgsddsqadKVYIYRTvagprrdappsvltl

meseskrkkespntaelavtasfpdEVLEIVLSlltshrdrssvslvckdwyraerwsrtqvfigncysvspeiltrrfpNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKslkvlkvnksislEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGleavgsncplleeLRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPklrkleirdcPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVmkedgsddsqadKVYIYRtvagprrdappsvltl

*****************AVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQM********************VYIYRTV**************

*********************SFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRRDAPPSVLTL

****************LAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAGPRR*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		585	2.2.26 [Sep-21-2011]
Q570C0		594	Protein TRANSPORT INHIBIT	yes	no	0.958	0.944	0.583	0.0
Q7XVM8		575	Transport inhibitor respo	yes	no	0.960	0.977	0.561	0.0
Q9LPW7		577	Protein AUXIN SIGNALING F	no	no	0.962	0.975	0.547	0.0
Q9LW29		575	Protein AUXIN SIGNALING F	no	no	0.960	0.977	0.551	0.0
Q9ZR12		585	GRR1-like protein 1 OS=Ar	no	no	0.962	0.962	0.544	1e-177
Q2R3K5		568	Transport inhibitor respo	no	no	0.950	0.978	0.508	1e-169
Q0DKP3		587	Transport inhibitor respo	no	no	0.953	0.950	0.537	1e-164
Q8RWQ8		623	F-box protein FBX14 OS=Ar	no	no	0.957	0.898	0.500	1e-162
Q9LTX2		619	Transport inhibitor respo	no	no	0.979	0.925	0.494	1e-160
O04197		592	Coronatine-insensitive pr	no	no	0.945	0.934	0.322	1e-80

>sp\|Q570C0\|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2	Back alignment and function desciption

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/566 (58%), Positives = 420/566 (74%), Gaps = 5/566 (0%)

Query: 19  VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRR 78
           +  SFP+EVLE V S +   +DR+SVSLVCK WY  ERW R +VFIGNCY+VSP  + RR
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRR 64

Query: 79  FPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEF 138
           FP +RSV LKGKP F+DFNLVP  WG  ++ W+ A ++ Y +LEE+RLKRM V+D+ LE 
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 139 LASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198
           +A +F NFK+L L SC+GFSTDGLAAIA  C+NL ELD++E+ ++D SG WLS FP+++T
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 199 SLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258
           SL  LN + L SEV+  ALERLV+RC +LK LK+N+++ LE+L  LL RAPQLEELGTG 
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 259 FLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSG 318
           +  ++    Y+ L  A + CK +  LSG W+AVP YLPA+Y+ C+ LT LNLSY  +QS 
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 319 EFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378
           +  KL+  CP+L+RLWVLD +ED GLE + S C  L ELRVFP++PF  E    +TE+G 
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 379 VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAF 438
           V+VS GC +L  VLYFCRQMTNAA+ TI +N PN T FRLCI+ P  PDYLT EP+D  F
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424

Query: 439 GAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLR 498
           GA+V+ C  L+RLS+SGLLTD  FEYIG YAK +E LSVAFAG SD GM  VL GC  LR
Sbjct: 425 GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484

Query: 499 KLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSD 558
           KLEIRDCPFG++ALL+   K E+MRSLWMS+C+V+  AC+ L ++MP+LNVEV+ E G+ 
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544

Query: 559 DSQ-----ADKVYIYRTVAGPRRDAP 579
           DS+      ++V+IYRTVAGPR D P
Sbjct: 545 DSRPESCPVERVFIYRTVAGPRFDMP 570

Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q7XVM8\|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1	Back alignment and function description

>sp\|Q9LPW7\|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LW29\|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZR12\|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1	Back alignment and function description

>sp\|Q2R3K5\|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1	Back alignment and function description

>sp\|Q0DKP3\|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2	Back alignment and function description

>sp\|Q8RWQ8\|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1	Back alignment and function description

>sp\|Q9LTX2\|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1	Back alignment and function description

>sp\|O04197\|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		585
224078846		579	f-box family protein [Populus trichocarp	0.967	0.977	0.871	0.0
359495481		583	PREDICTED: protein TRANSPORT INHIBITOR R	0.994	0.998	0.833	0.0
224114089		579	f-box family protein [Populus trichocarp	0.962	0.972	0.857	0.0
255567413		589	TRANSPORT INHIBITOR RESPONSE 1 protein,	0.991	0.984	0.827	0.0
147827158		620	hypothetical protein VITISV_016565 [Viti	0.994	0.938	0.764	0.0
356527933		578	PREDICTED: protein TRANSPORT INHIBITOR R	0.988	1.0	0.781	0.0
357475931		586	Protein AUXIN SIGNALING F-BOX [Medicago	0.994	0.993	0.784	0.0
356519534		578	PREDICTED: protein TRANSPORT INHIBITOR R	0.986	0.998	0.781	0.0
302144176		553	unnamed protein product [Vitis vinifera]	0.931	0.985	0.788	0.0
449434354		584	PREDICTED: protein AUXIN SIGNALING F-BOX	0.993	0.994	0.768	0.0

>gi\|224078846\|ref\|XP_002305651.1\| f-box family protein [Populus trichocarpa] gi\|222848615\|gb\|EEE86162.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1026 bits (2652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/566 (87%), Positives = 521/566 (92%)

Query: 20  TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRF 79
           ++ FPDEVLE VLSLL SH+DRS+VSLVCKDWY AE WSRT VFIGNCYSVSPEI+ RRF
Sbjct: 11  SSPFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRF 70

Query: 80  PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFL 139
           P I+SVTLKGKPRFSDFNLVP NWGAD+H WLV FA KYPFLEELRLKRMAVSDESLEFL
Sbjct: 71  PIIKSVTLKGKPRFSDFNLVPENWGADVHPWLVVFATKYPFLEELRLKRMAVSDESLEFL 130

Query: 140 ASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTS 199
           A NFPNFK+LSLLSCDGFSTDGLAAIATHCK+LT+LDIQENGI+D SG WLSCFPE+FTS
Sbjct: 131 AVNFPNFKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGIDDKSGGWLSCFPENFTS 190

Query: 200 LEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259
           LEVLNFANL ++VN DALERLVSRCKSLKVLKVNKSISLE LQRLLV APQL ELGTGSF
Sbjct: 191 LEVLNFANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQRLLVCAPQLTELGTGSF 250

Query: 260 LQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGE 319
             +LT R YA+LESAFN CKN+HTLSGLWEA  LYLP LY  C+NLTFLNLSYT LQS E
Sbjct: 251 TPELTTRQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCSNLTFLNLSYTFLQSLE 310

Query: 320 FAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379
            A L+  CPRLRRLWVLDTV DKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTE GFV
Sbjct: 311 LASLLRQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEAGFV 370

Query: 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFG 439
           AVS+GCRRLHYVLYFCRQMTNAAVATIVQNCP+FTHFRLCIM PG PDYLTNEPMDEAFG
Sbjct: 371 AVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFG 430

Query: 440 AVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRK 499
           AVV+TC+KLQRLSVSGLLTDLTFEYIG+YAKNLETLSVAFAG SDRGMQCVLEGCPKLRK
Sbjct: 431 AVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCVLEGCPKLRK 490

Query: 500 LEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDD 559
           LEIRDCPFGN ALLSGLEKYESMRSLWMSACNVTMN CR LA++MPRLNVEVMKEDGSDD
Sbjct: 491 LEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLAREMPRLNVEVMKEDGSDD 550

Query: 560 SQADKVYIYRTVAGPRRDAPPSVLTL 585
           SQADKVY+YR+VAGPRRDAPP VLTL
Sbjct: 551 SQADKVYVYRSVAGPRRDAPPCVLTL 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495481\|ref\|XP_002271412.2\| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224114089\|ref\|XP_002316664.1\| f-box family protein [Populus trichocarpa] gi\|222859729\|gb\|EEE97276.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255567413\|ref\|XP_002524686.1\| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] gi\|223536047\|gb\|EEF37705.1\| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147827158\|emb\|CAN66468.1\| hypothetical protein VITISV_016565 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356527933\|ref\|XP_003532560.1\| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357475931\|ref\|XP_003608251.1\| Protein AUXIN SIGNALING F-BOX [Medicago truncatula] gi\|355509306\|gb\|AES90448.1\| Protein AUXIN SIGNALING F-BOX [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356519534\|ref\|XP_003528427.1\| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|302144176\|emb\|CBI23303.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449434354\|ref\|XP_004134961.1\| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Cucumis sativus] gi\|449528142\|ref\|XP_004171065.1\| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		585
UNIPROTKB\|B9H216		579	FBL5 "F-box family protein" [P	0.967	0.977	0.871	3.7e-270
UNIPROTKB\|B9HZ12		579	FBL6 "F-box family protein" [P	0.962	0.972	0.857	3e-266
UNIPROTKB\|B9SFB7		589	RCOM_1095990 "TRANSPORT INHIBI	0.991	0.984	0.827	5.9e-263
TAIR\|locus:2099237		594	TIR1 "AT3G62980" [Arabidopsis	0.958	0.944	0.583	3e-179
UNIPROTKB\|B9S3W2		585	RCOM_0556140 "TRANSPORT INHIBI	0.969	0.969	0.562	2.8e-176
UNIPROTKB\|A4KA30		586	TIR1 "Transport inhibitor resp	0.964	0.962	0.570	7.5e-176
UNIPROTKB\|B9RH07		571	RCOM_1445820 "TRANSPORT INHIBI	0.958	0.982	0.568	1.1e-174
UNIPROTKB\|B9I9W7		584	FBL1 "F-box family protein" [P	0.964	0.965	0.567	4.7e-174
UNIPROTKB\|A5ARV5		581	VITISV_038840 "Putative unchar	0.964	0.970	0.572	1.3e-173
UNIPROTKB\|B9GFH2		571	FBL3 "F-box family protein" [P	0.958	0.982	0.561	1.8e-172

UNIPROTKB\|B9H216 FBL5 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

 Score = 2598 (919.6 bits), Expect = 3.7e-270, P = 3.7e-270
 Identities = 493/566 (87%), Positives = 521/566 (92%)

Query:    20 TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRF 79
             ++ FPDEVLE VLSLL SH+DRS+VSLVCKDWY AE WSRT VFIGNCYSVSPEI+ RRF
Sbjct:    11 SSPFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRF 70

Query:    80 PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFL 139
             P I+SVTLKGKPRFSDFNLVP NWGAD+H WLV FA KYPFLEELRLKRMAVSDESLEFL
Sbjct:    71 PIIKSVTLKGKPRFSDFNLVPENWGADVHPWLVVFATKYPFLEELRLKRMAVSDESLEFL 130

Query:   140 ASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTS 199
             A NFPNFK+LSLLSCDGFSTDGLAAIATHCK+LT+LDIQENGI+D SG WLSCFPE+FTS
Sbjct:   131 AVNFPNFKVLSLLSCDGFSTDGLAAIATHCKSLTQLDIQENGIDDKSGGWLSCFPENFTS 190

Query:   200 LEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259
             LEVLNFANL ++VN DALERLVSRCKSLKVLKVNKSISLE LQRLLV APQL ELGTGSF
Sbjct:   191 LEVLNFANLNTDVNFDALERLVSRCKSLKVLKVNKSISLEHLQRLLVCAPQLTELGTGSF 250

Query:   260 LQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGE 319
               +LT R YA+LESAFN CKN+HTLSGLWEA  LYLP LY  C+NLTFLNLSYT LQS E
Sbjct:   251 TPELTTRQYAELESAFNQCKNLHTLSGLWEATALYLPVLYPVCSNLTFLNLSYTFLQSLE 310

Query:   320 FAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379
              A L+  CPRLRRLWVLDTV DKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTE GFV
Sbjct:   311 LASLLRQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEAGFV 370

Query:   380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFG 439
             AVS+GCRRLHYVLYFCRQMTNAAVATIVQNCP+FTHFRLCIM PG PDYLTNEPMDEAFG
Sbjct:   371 AVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNPGQPDYLTNEPMDEAFG 430

Query:   440 AVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRK 499
             AVV+TC+KLQRLSVSGLLTDLTFEYIG+YAKNLETLSVAFAG SDRGMQCVLEGCPKLRK
Sbjct:   431 AVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSSDRGMQCVLEGCPKLRK 490

Query:   500 LEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDD 559
             LEIRDCPFGN ALLSGLEKYESMRSLWMSACNVTMN CR LA++MPRLNVEVMKEDGSDD
Sbjct:   491 LEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLLAREMPRLNVEVMKEDGSDD 550

Query:   560 SQADKVYIYRTVAGPRRDAPPSVLTL 585
             SQADKVY+YR+VAGPRRDAPP VLTL
Sbjct:   551 SQADKVYVYRSVAGPRRDAPPCVLTL 576

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB\|B9HZ12 FBL6 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

UNIPROTKB\|B9SFB7 RCOM_1095990 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

TAIR\|locus:2099237 TIR1 "AT3G62980" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B9S3W2 RCOM_0556140 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|A4KA30 TIR1 "Transport inhibitor response 1" [Gossypium hirsutum (taxid:3635)]	Back alignment and assigned GO terms

UNIPROTKB\|B9RH07 RCOM_1445820 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|B9I9W7 FBL1 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

UNIPROTKB\|A5ARV5 VITISV_038840 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)]	Back alignment and assigned GO terms

UNIPROTKB\|B9GFH2 FBL3 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q570C0	TIR1_ARATH	No assigned EC number	0.5830	0.9589	0.9444	yes	no
Q7XVM8	TIR1B_ORYSJ	No assigned EC number	0.5619	0.9606	0.9773	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	FBL5	f-box family protein (579 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		585
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	7e-08
cd00116		319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	9e-04
pfam12937		47	pfam12937, F-box-like, F-box-like	0.001

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 34/158 (21%)

Query: 131 VSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQE----NGIEDSS 186
           + DE L  LA + PN ++L L +C+  +  G+ A+AT+C  L  +++      + I D S
Sbjct: 65  IDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVS 124

Query: 187 GSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLV 246
            S L    ++ T L+ + FA    +V    +  L S C          S SLE+L   L 
Sbjct: 125 LSALG---KNCTFLQTVGFAG--CDVTDKGVWELASGC----------SKSLERLS--LN 167

Query: 247 RAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTL 284
               L +    + L             A N   N+  L
Sbjct: 168 NCRNLTDQSIPAIL-------------ASNYFPNLSVL 192

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		585
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.88
KOG4341		483	consensus F-box protein containing LRR [General fu	99.88
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.75
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.6
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.54
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.53
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.52
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.52
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.5
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.37
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.31
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.27
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.21
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.07
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.02
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.98
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.85
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.82
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.78
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.66
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.61
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.49
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.48
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.48
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.48
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.45
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.42
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.42
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.4
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.35
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.28
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.23
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.07
KOG0617		264	consensus Ras suppressor protein (contains leucine	98.01
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.0
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.9
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.84
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
KOG4308		478	consensus LRR-containing protein [Function unknown	97.69
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.68
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.64
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.48
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.47
KOG4308		478	consensus LRR-containing protein [Function unknown	97.44
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.35
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.15
PLN03150		623	hypothetical protein; Provisional	96.95
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	96.92
PLN03150		623	hypothetical protein; Provisional	96.8
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.78
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.52
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.48
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.44
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.39
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.39
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.39
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.27
KOG2997		366	consensus F-box protein FBX9 [General function pre	96.02
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.81
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.6
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.55
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	95.44
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	95.07
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.04
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.77
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.73
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	93.89
PRK15386		426	type III secretion protein GogB; Provisional	93.83
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.74
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	93.5
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.07
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.32
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.03
PRK15386		426	type III secretion protein GogB; Provisional	91.15
PF13013		109	F-box-like_2: F-box-like domain	90.16
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	90.12
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.19
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.4
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	82.88
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	80.19

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.4e-32  Score=250.38  Aligned_cols=375  Identities=24%  Similarity=0.410  Sum_probs=262.1

Q ss_pred             hcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhh--hccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCc
Q 007916           20 TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERW--SRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFN   97 (585)
Q Consensus        20 i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~   97 (585)
                      .-.||+|++..||++| +.+.+++++.+|+.|+-.+..  .|.++.+...                       +...+.+
T Consensus        72 ~~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~-----------------------~rDv~g~  127 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF-----------------------QRDVDGG  127 (483)
T ss_pred             cccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcc-----------------------hhcCCCc
Confidence            3479999999999999 488999999999999998763  2444433321                       1110100


Q ss_pred             cCCCCCCCchHHHHHHHHhh-CCCCcEEEeccc-ccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEE
Q 007916           98 LVPPNWGADIHAWLVAFAAK-YPFLEELRLKRM-AVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTEL  175 (585)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~-~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L  175 (585)
                                  .+..+.++ ...||.|.+.++ .+.+..+..+...||++++|.+.+|.++++..+..+...|++|+.|
T Consensus       128 ------------VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l  195 (483)
T KOG4341|consen  128 ------------VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL  195 (483)
T ss_pred             ------------ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh
Confidence                        02222222 234555555555 4445555555555666666666666656555555555556666555


Q ss_pred             EcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCcccccc
Q 007916          176 DIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELG  255 (585)
Q Consensus       176 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  255 (585)
                      ++..|.                             .+++..+..+...|++|++|+++.|..                  
T Consensus       196 ~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~q------------------  228 (483)
T KOG4341|consen  196 NLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQ------------------  228 (483)
T ss_pred             hhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCch------------------
Confidence            554431                             033334444444555555555554432                  


Q ss_pred             CcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEe
Q 007916          256 TGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWV  335 (585)
Q Consensus       256 l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l  335 (585)
                                                                                 +....+..+.+++..++.+..
T Consensus       229 -----------------------------------------------------------i~~~gv~~~~rG~~~l~~~~~  249 (483)
T KOG4341|consen  229 -----------------------------------------------------------ISGNGVQALQRGCKELEKLSL  249 (483)
T ss_pred             -----------------------------------------------------------hhcCcchHHhccchhhhhhhh
Confidence                                                                       222223333333333333333


Q ss_pred             ccc--CChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhh-hccCCCCCHHHHHHHHHhCCC
Q 007916          336 LDT--VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYV-LYFCRQMTNAAVATIVQNCPN  412 (585)
Q Consensus       336 ~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~~~~~l~~~~l~~l~~~~~~  412 (585)
                      .+|  ..++.+..+...++-+.++++..       |.. ++|.++..+..+|..|+.+ ..+|+++++..+..+.+.+++
T Consensus       250 kGC~e~~le~l~~~~~~~~~i~~lnl~~-------c~~-lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  250 KGCLELELEALLKAAAYCLEILKLNLQH-------CNQ-LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             cccccccHHHHHHHhccChHhhccchhh-------hcc-ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            333  23344555556666677777666       445 9999999999999999999 678999999999999999999


Q ss_pred             CceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc--CCChhHHHHHhhcCccccceeccccc-CChHHHHH
Q 007916          413 FTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG--LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQC  489 (585)
Q Consensus       413 L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~  489 (585)
                      |+.+.+.+|     .+++    +.++..+..+|+.|+.+++.+  .+.|..+..++.+|+.|++|+++.|. +||+|+..
T Consensus       322 L~~l~l~~c-----~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~  392 (483)
T KOG4341|consen  322 LQVLELSGC-----QQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH  392 (483)
T ss_pred             eEEEecccc-----chhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence            999999885     4588    889999999999999999977  67777899999999999999999996 89999988


Q ss_pred             HHh---cCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccc-cCHHHHHHHHhhCCCCcEEEec
Q 007916          490 VLE---GCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACN-VTMNACRRLAKQMPRLNVEVMK  553 (585)
Q Consensus       490 l~~---~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-it~~~~~~~~~~~p~l~~~~~~  553 (585)
                      +..   +...|+.+.+++|+.+.+...+-+..|++|+.+++.+|+ ++.+++..++..+|++.|.-+-
T Consensus       393 l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  393 LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            744   356899999999998444444788999999999999998 9999999999999998775433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		585
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		0.0
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		9e-82
1fqv_A		336	Insights Into Scf Ubiquitin Ligases From The Struct		5e-04

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

Iteration: 1

Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/566 (58%), Positives = 420/566 (74%), Gaps = 5/566 (0%) Query: 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRR 78 + SFP+EVLE V S + +DR+SVSLVCK WY ERW R +VFIGNCY+VSP + RR Sbjct: 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRR 64 Query: 79 FPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEF 138 FP +RSV LKGKP F+DFNLVP WG ++ W+ A ++ Y +LEE+RLKRM V+D+ LE Sbjct: 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 Query: 139 LASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 +A +F NFK+L L SC+GFSTDGLAAIA C+NL ELD++E+ ++D SG WLS FP+++T Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 Query: 199 SLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 SL LN + L SEV+ ALERLV+RC +LK LK+N+++ LE+L LL RAPQLEELGTG Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 Query: 259 FLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSG 318 + ++ Y+ L A + CK + LSG W+AVP YLPA+Y+ C+ LT LNLSY +QS Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 Query: 319 EFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378 + KL+ CP+L+RLWVLD +ED GLE + S C L ELRVFP++PF E +TE+G Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 Query: 379 VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAF 438 V+VS GC +L VLYFCRQMTNAA+ TI +N PN T FRLCI+ P PDYLT EP+D F Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 Query: 439 GAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLR 498 GA+V+ C L+RLS+SGLLTD FEYIG YAK +E LSVAFAG SD GM VL GC LR Sbjct: 425 GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484 Query: 499 KLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSD 558 KLEIRDCPFG++ALL+ K E+MRSLWMS+C+V+ AC+ L ++MP+LNVEV+ E G+ Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 Query: 559 DSQ-----ADKVYIYRTVAGPRRDAP 579 DS+ ++V+IYRTVAGPR D P Sbjct: 545 DSRPESCPVERVFIYRTVAGPRFDMP 570

PyMOL of 2p1m

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		585
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	0.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-169
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-30
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	8e-19
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-15
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A		466	Internalin A; bacterial infection, extracellular r	4e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	1e-04
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	9e-04
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-04
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	6e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	7e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  561 bits (1446), Expect = 0.0
 Identities = 331/571 (57%), Positives = 420/571 (73%), Gaps = 5/571 (0%)

Query: 20  TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRF 79
             SFP+EVLE V S +   +DR+SVSLVCK WY  ERW R +VFIGNCY+VSP  + RRF
Sbjct: 6   ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65

Query: 80  PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFL 139
           P +RSV LKGKP F+DFNLVP  WG  ++ W+ A ++ Y +LEE+RLKRM V+D+ LE +
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 140 ASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTS 199
           A +F NFK+L L SC+GFSTDGLAAIA  C+NL ELD++E+ ++D SG WLS FP+++TS
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 200 LEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259
           L  LN + L SEV+  ALERLV+RC +LK LK+N+++ LE+L  LL RAPQLEELGTG +
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245

Query: 260 LQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGE 319
             ++    Y+ L  A + CK +  LSG W+AVP YLPA+Y+ C+ LT LNLSY  +QS +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 320 FAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379
             KL+  CP+L+RLWVLD +ED GLE + S C  L ELRVFP++PF  E    +TE+G V
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFG 439
           +VS GC +L  VLYFCRQMTNAA+ TI +N PN T FRLCI+ P  PDYLT EP+D  FG
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425

Query: 440 AVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRK 499
           A+V+ C  L+RLS+SGLLTD  FEYIG YAK +E LSVAFAG SD GM  VL GC  LRK
Sbjct: 426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485

Query: 500 LEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDD 559
           LEIRDCPFG++ALL+   K E+MRSLWMS+C+V+  AC+ L ++MP+LNVEV+ E G+ D
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545

Query: 560 S-----QADKVYIYRTVAGPRRDAPPSVLTL 585
           S       ++V+IYRTVAGPR D P  V  +
Sbjct: 546 SRPESCPVERVFIYRTVAGPRFDMPGFVWNM 576

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		585
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	99.98
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.92
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.9
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.89
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.88
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.87
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.87
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.86
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.86
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.85
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.85
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.84
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.83
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.82
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.81
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.81
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.8
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.73
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.72
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.6
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.59
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.57
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.51
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.51
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.5
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.49
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.47
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.45
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.44
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.43
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.43
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.41
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.41
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.41
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.41
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.4
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.39
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.36
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.35
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.35
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.33
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.32
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.32
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.28
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.23
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.22
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	99.17
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.17
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.14
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	99.14
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.13
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.12
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	99.09
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.08
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	99.04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	99.01
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.97
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.97
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.97
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.91
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.91
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.89
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.88
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.87
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.84
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.81
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.8
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.76
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.75
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.74
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.71
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.71
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.6
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.58
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.57
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.54
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.54
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.51
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.5
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.5
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.48
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.47
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.46
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.42
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.42
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.37
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.36
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.34
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.28
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.22
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	98.18
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	98.14
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	98.13
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	98.12
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	98.08
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	98.04
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.95
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.9
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.9
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.84
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.79
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.75
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.72
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.6
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.59
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.47
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.32
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.32
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.27
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.26
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	97.24
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.24
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	97.13
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.97
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.84
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.5
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	96.44
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	96.07
4h09_A		379	Hypothetical leucine rich repeat protein; two LRR_	84.01

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=5.7e-61  Score=507.93  Aligned_cols=567  Identities=58%  Similarity=1.049  Sum_probs=500.1

Q ss_pred             hhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhhhccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCc
Q 007916           18 AVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFN   97 (585)
Q Consensus        18 ~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~   97 (585)
                      +.+..||+||+.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..++.++++++.+++.+++.+.+++
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~   83 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN   83 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence            67899999999999999965899999999999999997788999999999999999999999999999999999998899


Q ss_pred             cCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEc
Q 007916           98 LVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDI  177 (585)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L  177 (585)
                      +.+..|+....+|+..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+...+++|++|++
T Consensus        84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L  163 (594)
T 2p1m_B           84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL  163 (594)
T ss_dssp             CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence            99999999999999999999999999999999999999999987799999999999977878888888889999999999


Q ss_pred             ccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCc
Q 007916          178 QENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTG  257 (585)
Q Consensus       178 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  257 (585)
                      ++|.+++.+..++..++..+++|++|+++++...++.+.+..+...+++|++|++++|....+++..+..+++|++|.+.
T Consensus       164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred             cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence            99998888877788888899999999999887568889999988899999999999998888899999999999999988


Q ss_pred             ccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecc
Q 007916          258 SFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLD  337 (585)
Q Consensus       258 ~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~  337 (585)
                      .+........+..+...+..|++|+.+++.+......++.....+++|++|++++|.+++..+..++..+++|++|++.+
T Consensus       244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence            77554444456667777788999999976666666777777778999999999999988888888889999999999999


Q ss_pred             cCChhhHHHHHhcCCCCcEEEecCCCCC-chhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceE
Q 007916          338 TVEDKGLEAVGSNCPLLEELRVFPADPF-DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHF  416 (585)
Q Consensus       338 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L  416 (585)
                      +..+.++..+...+++|++|++.++++. ...+.. +++.++..+..++++|++|.++|+.+++..+..++..+++|++|
T Consensus       324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            8888888888888999999999653211 001344 88999999988899999999999999999999998889999999


Q ss_pred             EeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCC
Q 007916          417 RLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPK  496 (585)
Q Consensus       417 ~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~  496 (585)
                      +++.+....|+.+++.+.++++..++..|++|+.|++++.+++.++..++..+++|+.|++++|.+++.++..++.+|++
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  482 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS  482 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence            99954322367788777788999999999999999998899999999999779999999999999999999998899999


Q ss_pred             ccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccCCC-----CCCccceeeeeecc
Q 007916          497 LRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGS-----DDSQADKVYIYRTV  571 (585)
Q Consensus       497 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~  571 (585)
                      |++|++++|++++.++...+.++++|++|++++|++++.|++.++..+|+++++++++.+.     +.+.++++++|++.
T Consensus       483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (594)
T 2p1m_B          483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV  562 (594)
T ss_dssp             CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECS
T ss_pred             cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhcc
Confidence            9999999999999888888888999999999999999999999999999999999987653     45677899999999


Q ss_pred             cCCCCCCCCCCCCC
Q 007916          572 AGPRRDAPPSVLTL  585 (585)
Q Consensus       572 ~~~~~~~~~~~~~~  585 (585)
                      +|||.|+|++|.++
T Consensus       563 ~~~~~~~p~~~~~l  576 (594)
T 2p1m_B          563 AGPRFDMPGFVWNM  576 (594)
T ss_dssp             SCSCSCCCTTEEEC
T ss_pred             CCCCCCCCCceEec
Confidence            99999999998764

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		585
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-09
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1koha1		162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-04
d2ca6a1		344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1jl5a_		353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 9/236 (3%)

Query: 121 LEELRLKRMAVSDESLEFLASNFPNFKLLSL-LSCDGFSTDGLAAIATHCKNLTELDIQE 179
           +   R  R  +       LA +F  F++  + LS        L  I + C  L  L ++ 
Sbjct: 25  VIAFRCPRSFMDQP----LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 180 NGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLE 239
             + D   + L+    +   L +   +  +       L       +       + +    
Sbjct: 81  LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139

Query: 240 QLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALY 299
           Q+    V     +   +G       +     +    N      + S + +          
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLE 355
           N    L  L+LS       E    +   P L+ L V   V D  L+ +    P L+
Sbjct: 200 N---YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		585
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.91
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.86
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.7
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.62
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.6
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.46
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.11
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.98
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.98
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.96
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.91
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.88
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.85
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.82
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.81
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.8
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.79
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.75
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.75
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.71
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.66
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.65
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.61
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.61
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.54
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.43
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.39
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.07
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.99
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.98
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.94
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.74
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.73
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.36
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.19
d2ifga3		156	High affinity nerve growth factor receptor, N-term	97.15

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.2e-22  Score=200.22  Aligned_cols=410  Identities=17%  Similarity=0.150  Sum_probs=254.6

Q ss_pred             CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHH---HHHhCCCCCEEEcccCCCCcccccccccc-c
Q 007916          119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAA---IATHCKNLTELDIQENGIEDSSGSWLSCF-P  194 (585)
Q Consensus       119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~~~~~~~~l~~~-~  194 (585)
                      ++|++|+++++.+++..+..+...+++++.|+|.+|. +++.++..   .+..+++|++|+|++|.+++.+...+... .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            3577888888888887777777778888888888875 66655543   34677888888888888776654444322 2


Q ss_pred             cCCCCcCEEEeccCCCCCChHHHHHH---HhcCCCCcEEEecCCcchhHHHHHH-HhCC----ccccccCcccccccCCC
Q 007916          195 ESFTSLEVLNFANLTSEVNTDALERL---VSRCKSLKVLKVNKSISLEQLQRLL-VRAP----QLEELGTGSFLQDLTAR  266 (585)
Q Consensus       195 ~~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~~~~~~~~~~  266 (585)
                      ....+|++|+++++.  ++++++..+   +..+++|++|++++|.....-...+ ....    ...........  ....
T Consensus        81 ~~~~~L~~L~L~~n~--it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~  156 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAA  156 (460)
T ss_dssp             STTCCCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGG
T ss_pred             cCCCCCCEEECCCCC--ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccc--cchh
Confidence            334578888888775  666554433   4567788888888775332211111 1111    11111111110  0111


Q ss_pred             chhhHHHHhhcCCcccccc-cccccCcCCHH----HHhhcCCCCcEEEecccccCChh---HHHHHhcCCCCcEEEeccc
Q 007916          267 PYADLESAFNNCKNIHTLS-GLWEAVPLYLP----ALYNSCANLTFLNLSYTALQSGE---FAKLVVHCPRLRRLWVLDT  338 (585)
Q Consensus       267 ~~~~l~~~~~~~~~L~~l~-~~~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~~  338 (585)
                      ..............++.+. ......+....    ...........+.+..+.+....   ........+.++.+.+..+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhc
Confidence            2222222333334444333 11111111111    11222345677888877644433   3334566788899988865


Q ss_pred             CC-hh----hHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH---HhcCccchhhhccCCCCCHHHHHHHHH--
Q 007916          339 VE-DK----GLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV---SFGCRRLHYVLYFCRQMTNAAVATIVQ--  408 (585)
Q Consensus       339 ~~-~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~~~~~~l~~~~l~~l~~--  408 (585)
                      .. +.    ...........++.++++++.         +........   ....+.++.+.++.+.+++..+..++.  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~---------i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l  307 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIWECG---------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL  307 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSC---------CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred             cccccccchhhccccccccccccccccccc---------ccccccccccccccccccccccccccccccccccchhhccc
Confidence            32 22    223334556789999999865         544443322   234677888888888898888777654  


Q ss_pred             --hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhh----cCccccceeccccc
Q 007916          409 --NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGK----YAKNLETLSVAFAG  481 (585)
Q Consensus       409 --~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~  481 (585)
                        ....|+.+.++++.      ++... ...+......++.|++|++++ .++++++..++.    ..+.|+.|++++|.
T Consensus       308 ~~~~~~L~~l~l~~~~------l~~~~-~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         308 LEPGCQLESLWVKSCS------FTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             TSTTCCCCEEECTTSC------CBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             cccccccccccccccc------hhhhh-hhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC
Confidence              34578999988653      34100 123444556778899999988 888888777753    35679999999999


Q ss_pred             CChHHHHHH---HhcCCCccEEEecCCCCChHHHHHHHhcC----cCCcEEEccccccCHH---HHHHHHhhCCCCcE
Q 007916          482 RSDRGMQCV---LEGCPKLRKLEIRDCPFGNEALLSGLEKY----ESMRSLWMSACNVTMN---ACRRLAKQMPRLNV  549 (585)
Q Consensus       482 i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~~~l----~~L~~L~l~~~~it~~---~~~~~~~~~p~l~~  549 (585)
                      ++++|+..+   +..+++|++|++++|++++.++..+.+.+    ..|+.|++.+|.++++   .++.+.+..|++.+
T Consensus       381 i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            999887665   45689999999999999988877766544    4799999999997764   44455677777654

PyMOL of d1z7xw1

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure