Citrus Sinensis ID: 007951
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.910 | 0.898 | 0.890 | 0.0 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.989 | 0.993 | 0.824 | 0.0 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.960 | 0.941 | 0.815 | 0.0 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.876 | 0.884 | 0.884 | 0.0 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.543 | 0.784 | 0.331 | 3e-39 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.526 | 0.763 | 0.327 | 5e-39 | |
| P06168 | 395 | Ketol-acid reductoisomera | yes | no | 0.502 | 0.741 | 0.313 | 7e-33 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.351 | 0.621 | 0.347 | 8e-28 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.356 | 0.615 | 0.351 | 8e-28 | |
| A1WUW3 | 336 | Ketol-acid reductoisomera | yes | no | 0.514 | 0.892 | 0.292 | 9e-28 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/531 (89%), Positives = 496/531 (93%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSY 472
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSY
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 480
Query: 473 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN 532
SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+
Sbjct: 481 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDS 540
Query: 533 DAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct: 541 GAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/587 (82%), Positives = 520/587 (88%), Gaps = 10/587 (1%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSAL 56
MAA T S I S SS+TL + + NL+ + +S+RA ++ T GSAL
Sbjct: 1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSAL 54
Query: 57 SAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGV 116
A S P LDFETSVFKK+ ++LA +EYIVRGGRDLF+LLPDAF GI QIGV
Sbjct: 55 GATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGV 114
Query: 117 IGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176
IGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETI
Sbjct: 115 IGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETI 174
Query: 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236
SGSDLVLLLISD+AQADNYEKIFS +KPNSILGLSHGFLLGHLQS+GLDFPKN VIAVC
Sbjct: 175 SGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVC 234
Query: 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296
PKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQ
Sbjct: 235 PKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 294
Query: 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGML 356
EY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGML
Sbjct: 295 EYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGML 354
Query: 357 AVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPA 416
AVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPA
Sbjct: 355 AVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPA 414
Query: 417 FPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEII 476
FPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEII
Sbjct: 415 FPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEII 474
Query: 477 NESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPI 536
NESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ API
Sbjct: 475 NESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPI 534
Query: 537 NGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
N DLISNF+SDPVHGAI+VCA+LRPT+DISVP ADFVRPELRQ SN
Sbjct: 535 NQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/576 (81%), Positives = 511/576 (88%), Gaps = 16/576 (2%)
Query: 14 KFSPSPSSETLKEALKHLNLASFSSTAKSLRALKTT-------TGRGSALSAWMASETAL 66
K SP PS+ +L SST K+ R+LK G GSALSA M S ++
Sbjct: 26 KQSPKPSA-------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSI 78
Query: 67 KTP--FLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGP 124
TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ P
Sbjct: 79 NTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAP 138
Query: 125 AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184
AQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLL
Sbjct: 139 AQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLL 198
Query: 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244
LISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSV
Sbjct: 199 LISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSV 258
Query: 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFG 304
RRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDIFG
Sbjct: 259 RRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFG 318
Query: 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364
ERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S
Sbjct: 319 ERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSE 378
Query: 365 EDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ 424
E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ
Sbjct: 379 EGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ 438
Query: 425 TRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESV 484
TRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+V
Sbjct: 439 TRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAV 498
Query: 485 DSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNF 544
DSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNF
Sbjct: 499 DSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNF 558
Query: 545 LSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 580
LSDPVH AI VCAQLRP+VDISV DADFVRPELRQ
Sbjct: 559 LSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/511 (88%), Positives = 481/511 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 307
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 367
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 368 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 427
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM 491
E+VRSTRP DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFM
Sbjct: 428 EKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFM 487
Query: 492 HARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHG 551
HARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHG
Sbjct: 488 HARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHG 547
Query: 552 AIEVCAQLRPTVDISVPPDADFVRPELRQGS 582
AIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct: 548 AIEVCAELRPTVDISVPANADFVRPELRQSS 578
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 175/341 (51%), Gaps = 24/341 (7%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVL 403
+ +I G+ ++ + S ++ ++L E Y++V G+E + +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 404 AG-----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y+KE + +I +WK GE VRS RP
Sbjct: 365 YNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 29/336 (8%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+ + +IG+GSQG Q NLRD+ + V VG+RK +S+ +A G+ L D
Sbjct: 84 DTLALIGYGSQGHGQGLNLRDN------GLNVIVGVRKNGKSWEDAIQDGWVP-GKNLFD 136
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
+ E IS +V+ L+SDAAQ++ + I + L SHGF ++ P ++
Sbjct: 137 VDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVD 196
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+ VA+GS + +
Sbjct: 197 VILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYE 251
Query: 292 TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIS 351
TT E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 TTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIG 311
Query: 352 TQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG--- 405
GM ++++ S ++ ++ + + P LY+ V G E + +
Sbjct: 312 AHGMDWMFDACSTTARRGAIDWTPKFKDALKPVFNNLYDS---VKNGDETKRSLEYNSQP 368
Query: 406 --RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R YE E + +I +W+ G+ VRS RP
Sbjct: 369 DYRERYEAE------LDEIRNLEIWRAGKAVRSLRP 398
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P06168|ILV5_YEAST Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 23/316 (7%)
Query: 129 NLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188
NLRD+ + V +G+RK S+ A G+ L + + I V+ L+SD
Sbjct: 95 NLRDN------GLNVIIGVRKDGASWKAAIEDGWVP-GKNLFTVEDAIKRGSYVMNLLSD 147
Query: 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248
AAQ++ + I + L SHGF ++ PK++ VI V PKG G +VR L+
Sbjct: 148 AAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLF 207
Query: 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308
+G+ GINSS+AV DV G+A A +VA+GS + + TT E+E SD++GERG
Sbjct: 208 KEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGC 262
Query: 309 LLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
L+G +HG+ + + ENG + A+ TVE T + +I GM +Y++ S ++
Sbjct: 263 LMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARR 322
Query: 369 EFEKAYSASYYPCME-----ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKID 423
+ +YP + + + YE G+E + + + +E L + I
Sbjct: 323 G-----ALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIR 376
Query: 424 QTRMWKVGERVRSTRP 439
+WKVG+ VR RP
Sbjct: 377 NMEIWKVGKEVRKLRP 392
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 31/236 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
TT ++E +D+FGE+ +L G ++++ F E G ++AY EC+
Sbjct: 178 GVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVEAGYQPEIAY---FECLN 230
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 25/233 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
T + E +D+FGE+ +L G ++++ F E G +LAY EC+
Sbjct: 179 IETNFKDETETDLFGEQAVLCGGSAELIKAGFDTLVEGGYPAELAY---FECM 228
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A1WUW3|ILVC_HALHL Ketol-acid reductoisomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 164/335 (48%), Gaps = 35/335 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL++S + V VGLR GS S A+A+ AG + +
Sbjct: 18 RVAIIGYGSQGHAHANNLKES------GVNVVVGLRPGSSSAAKAQEAGLE-----VASV 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E G+D+V++L+ D A D Y +++ +K + + +HGF + + Q + +
Sbjct: 67 EEATQGADVVMMLVPDEAAPDIYNQQVAPNLKDGAAIAFAHGFNIHYGQ---IQPAADHD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
VI + PKG G +VR YV G AG+ S A+ QD G+A +AL ++VA G +
Sbjct: 124 VIMIAPKGPGHTVRSTYVAG-----AGVPSLIAIEQDASGQAKEIALAYAVANGGGRSGI 178
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIIS 347
T+ +E +D+FGE+ +L G + ++E+ F E G ++AY EC+ T +I
Sbjct: 179 IETSFREETETDLFGEQTVLCGGIAALIEAGFETLVEAGYAPEMAY---FECLHETKLIV 235
Query: 348 KIISTQGMLAVYNSFSGE-DKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGR 406
++ G+ + S S + +F + E + E E++ G + VL
Sbjct: 236 DLLYEGGLANMRYSVSNTAEYGDFTRGPRVINEESREAMREILEEIQNGDFAKEYVLE-- 293
Query: 407 RFYEKEGLPAFPMGK--IDQTRMWKVGERVRSTRP 439
K G P + + + +VGER+R P
Sbjct: 294 ---NKAGAPTLHARRRLAAEHPIEEVGERLRGMMP 325
|
Halorhodospira halophila (strain DSM 244 / SL1) (taxid: 349124) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.965 | 0.957 | 0.866 | 0.0 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.993 | 0.991 | 0.841 | 0.0 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.941 | 0.932 | 0.871 | 0.0 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.946 | 0.940 | 0.868 | 0.0 | |
| 255671795 | 587 | acetohydroxyacid isomeroreductase [Glyci | 0.946 | 0.940 | 0.872 | 0.0 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.965 | 0.959 | 0.859 | 0.0 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.910 | 0.898 | 0.890 | 0.0 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.939 | 0.935 | 0.869 | 0.0 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.910 | 0.893 | 0.892 | 0.0 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.987 | 0.979 | 0.832 | 0.0 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/570 (86%), Positives = 523/570 (91%), Gaps = 7/570 (1%)
Query: 21 SETLKEALKHL--NLASFSSTA-KSLRA--LKTTT--GRGSALSAWMASETALKTPFLLD 73
++TLK +L NL SS A +SLRA L T++ G GSAL+A M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DEYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAV
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 318
Query: 314 HGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TE+G +EDLAYKNTVECITGIISK ISTQGMLAVYN+ S + KKEFE A
Sbjct: 319 HGIVESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAA 378
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGER 433
YSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEK+GLPAFPMGKIDQTRMWKVGER
Sbjct: 379 YSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKDGLPAFPMGKIDQTRMWKVGER 438
Query: 434 VRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHA 493
VRS RPAGDLGPL PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHA
Sbjct: 439 VRSVRPAGDLGPLCPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHA 498
Query: 494 RGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAI 553
RGVSFMVDNCSTTARLGSRKWAPRFDYI+TQQALVAVDN PIN DLISNFLSDPVHGAI
Sbjct: 499 RGVSFMVDNCSTTARLGSRKWAPRFDYIITQQALVAVDNGVPINRDLISNFLSDPVHGAI 558
Query: 554 EVCAQLRPTVDISVPPDADFVRPELRQGSN 583
EVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct: 559 EVCAQLRPTVDISVPADADFVRPELRQSSN 588
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/585 (84%), Positives = 523/585 (89%), Gaps = 6/585 (1%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSST---AKSLRALKTTTGRGSALSAW 59
+AT FS +PK P+P T K +L++ +KS ++L+ G GSA+ A
Sbjct: 2 SATASFSATLPK--PTPFLSTPKSISSSSSLSTLGFLSIRSKSFKSLRANGGGGSAVGAC 59
Query: 60 -MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIG 118
M S A+K LDFET+VFKK+ ISLA DEYIVRGGRDLF LLPDAF GI QIGVIG
Sbjct: 60 SMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGRDLFKLLPDAFKGIKQIGVIG 119
Query: 119 WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178
WGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR+AGFTEENGTLGDI+ET+SG
Sbjct: 120 WGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEARSAGFTEENGTLGDIWETVSG 179
Query: 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238
SDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPK
Sbjct: 180 SDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPK 239
Query: 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298
GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY
Sbjct: 240 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEY 299
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+SDIFGERGILLGAVHGIVESLFRR+TENGM+ED AYKNTVECITGIISK ISTQGMLAV
Sbjct: 300 KSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNTVECITGIISKTISTQGMLAV 359
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418
YNS S E KK+FE AYSASYYPCM+ILYECYEDVA GSEIRSVVLAGRRFYE++GLPAFP
Sbjct: 360 YNSLSEEGKKQFETAYSASYYPCMDILYECYEDVACGSEIRSVVLAGRRFYERDGLPAFP 419
Query: 419 MGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINE 478
MGKIDQTRMWKVGERVRSTR AGDLGPL PFTAGVY ALMMAQIEILRKKGHSYSEIINE
Sbjct: 420 MGKIDQTRMWKVGERVRSTRAAGDLGPLDPFTAGVYVALMMAQIEILRKKGHSYSEIINE 479
Query: 479 SVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPING 538
SVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQA+V+VDN P+
Sbjct: 480 SVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQAMVSVDNGTPVKC 539
Query: 539 DLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
DLISNF+SDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ SN
Sbjct: 540 DLISNFMSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQSSN 584
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/552 (87%), Positives = 509/552 (92%), Gaps = 3/552 (0%)
Query: 35 SFSSTAKSLRALKTTTGR--GSALSAWMASETALKTPFL-LDFETSVFKKDMISLADRDE 91
S S ++K+ + LK + G G L A M S P + LDFETSVFKK+ +SLA DE
Sbjct: 38 SSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDE 97
Query: 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151
YIVRGGRDLF+LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GLRKGS
Sbjct: 98 YIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGS 157
Query: 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211
RSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLS
Sbjct: 158 RSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLS 217
Query: 212 HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271
HGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDG
Sbjct: 218 HGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDG 277
Query: 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNE 331
RAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+E
Sbjct: 278 RATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSE 337
Query: 332 DLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYED 391
D AYKNTVECITGIIS+ IST+GMLAVYNS + E KKEFE AYSAS+YPCM+ILYECYED
Sbjct: 338 DEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYECYED 397
Query: 392 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 451
VA+GSEIRSVVLAGRRFYEKEGLP FPMGKIDQTRMWKVGERVR+TRPAGDLGPLHPFTA
Sbjct: 398 VASGSEIRSVVLAGRRFYEKEGLPDFPMGKIDQTRMWKVGERVRATRPAGDLGPLHPFTA 457
Query: 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 511
GVY ALMMAQIEILRKKGHSYSEIINES+IESVDSLNPFMHARGVSFMVDNCSTTARLGS
Sbjct: 458 GVYVALMMAQIEILRKKGHSYSEIINESLIESVDSLNPFMHARGVSFMVDNCSTTARLGS 517
Query: 512 RKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDA 571
RKWAPRFDYI+TQQALVAVDN PIN DLISNF SDPVHGA+EVCAQLRPTVDISVPPDA
Sbjct: 518 RKWAPRFDYIVTQQALVAVDNGTPINRDLISNFFSDPVHGAVEVCAQLRPTVDISVPPDA 577
Query: 572 DFVRPELRQGSN 583
DFVRPELRQ SN
Sbjct: 578 DFVRPELRQSSN 589
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/556 (86%), Positives = 516/556 (92%), Gaps = 4/556 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVRSTRPAGD GPL+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLY 451
Query: 448 PFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 507
PFTAGV+ ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTA
Sbjct: 452 PFTAGVFVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTA 511
Query: 508 RLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISV 567
RLGSRKWAPRFDYILTQQA+VAVDN PIN DLISNFLSDPVHGAI+VCA+LRPTVDISV
Sbjct: 512 RLGSRKWAPRFDYILTQQAMVAVDNGTPINRDLISNFLSDPVHGAIKVCAELRPTVDISV 571
Query: 568 PPDADFVRPELRQGSN 583
PPDADFVRPELRQ SN
Sbjct: 572 PPDADFVRPELRQSSN 587
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255671795|gb|ACU26530.1| acetohydroxyacid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/556 (87%), Positives = 514/556 (92%), Gaps = 4/556 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VAL WSVALGSPFTFAT+LE EYRSDIFGERGILLGAVHGIVESLFRR+TE+
Sbjct: 272 DVDGRATDVALAWSVALGSPFTFATSLEMEYRSDIFGERGILLGAVHGIVESLFRRYTEH 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GM+EDLAY NTVE ITG ISKIIST+GMLAVYN+ S ++K+EFEKAYSAS YPCM+ILYE
Sbjct: 332 GMSEDLAYNNTVESITGTISKIISTKGMLAVYNALSEDEKREFEKAYSASCYPCMDILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYED+AAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+
Sbjct: 392 CYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLY 451
Query: 448 PFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 507
PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA
Sbjct: 452 PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 511
Query: 508 RLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISV 567
RLGSRKWAPRFDYILTQQALVAVDN APIN DLISNFLSD VHGAIEVCAQLRPTVDISV
Sbjct: 512 RLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDISV 571
Query: 568 PPDADFVRPELRQGSN 583
PPDADFVRPELRQ SN
Sbjct: 572 PPDADFVRPELRQSSN 587
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/571 (85%), Positives = 519/571 (90%), Gaps = 8/571 (1%)
Query: 20 SSETLKEALKH--LNLASFSSTAKSL-----RALKTTTGRGSALSAWMASE-TALKTPFL 71
+++TLK K NL+ SS+ SL RA TT GSA++A M S A+K P
Sbjct: 17 ATKTLKHPTKTSVHNLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTN 76
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDFETSVFKK+ I+LA +EYIVRGGRDLFNLLPDAF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 77 LDFETSVFKKEKINLAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLR 136
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAE KSDI+VK+GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQ
Sbjct: 137 DSLAETKSDILVKIGLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQ 196
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYE++FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 197 ADNYEQVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQG 256
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 257 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 316
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVESLFRR+TENGM E+LAYKNTVECITGIISK IST+GMLAVYN+ + E+KKEFE
Sbjct: 317 AVHGIVESLFRRYTENGMAEELAYKNTVECITGIISKTISTKGMLAVYNALTEEEKKEFE 376
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
AYSAS+YPCM+ILYECYEDVA GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG
Sbjct: 377 TAYSASFYPCMDILYECYEDVATGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 436
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM 491
ERVRS RP GDLGPL PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM
Sbjct: 437 ERVRSVRPTGDLGPLCPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM 496
Query: 492 HARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHG 551
HARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA+VAVDN PIN DLISNFLSDPVHG
Sbjct: 497 HARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAMVAVDNKTPINRDLISNFLSDPVHG 556
Query: 552 AIEVCAQLRPTVDISVPPDADFVRPELRQGS 582
AIEVCAQLRPTVDISVP DADFVRPELRQ S
Sbjct: 557 AIEVCAQLRPTVDISVPADADFVRPELRQSS 587
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/531 (89%), Positives = 496/531 (93%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSY 472
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSY
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 480
Query: 473 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN 532
SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+
Sbjct: 481 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDS 540
Query: 533 DAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct: 541 GAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/552 (86%), Positives = 513/552 (92%), Gaps = 4/552 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVRSTRPAGD GPL+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLY 451
Query: 448 PFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTA 507
PFTAGV+ ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTA
Sbjct: 452 PFTAGVFVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTA 511
Query: 508 RLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISV 567
RLGSRKWAPRFDYILTQQA+VAVDN PIN DLISNFLSDPVHGAI+VCA+LRPTVDISV
Sbjct: 512 RLGSRKWAPRFDYILTQQAMVAVDNGTPINRDLISNFLSDPVHGAIKVCAELRPTVDISV 571
Query: 568 PPDADFVRPELR 579
PPDADFVRPELR
Sbjct: 572 PPDADFVRPELR 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/531 (89%), Positives = 494/531 (93%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+LSA M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 304 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 363
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 364 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 423
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSY 472
GLPAFPMG IDQTRMWKVGE VR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSY
Sbjct: 424 GLPAFPMGNIDQTRMWKVGEGVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 483
Query: 473 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN 532
SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+
Sbjct: 484 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDS 543
Query: 533 DAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct: 544 GAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 594
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/590 (83%), Positives = 524/590 (88%), Gaps = 14/590 (2%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHLNLA-----SFSSTAKSLRALKTT-----T 50
MAAAT F+ P S S S++TLK A LA SS++ L ALK
Sbjct: 1 MAAATTHFA---PSISAS-SAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
G GSAL A M S A+K LDF+TSVFKK+ ++LA DEYIVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM E+LAYKNTVE ITGIIS+ I
Sbjct: 297 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMAEELAYKNTVESITGIISRTI 356
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
ST+GMLAVYNSFS ++KKEFE+AYSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 357 STKGMLAVYNSFSPDEKKEFERAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 416
Query: 411 KEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGH 470
KEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGH
Sbjct: 417 KEGLPAFPMGNIDQTRMWKVGERVRQSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGH 476
Query: 471 SYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAV 530
SYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVA+
Sbjct: 477 SYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAI 536
Query: 531 DNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 580
DN + +N DLISNFLSDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ
Sbjct: 537 DNGSAVNQDLISNFLSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQ 586
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 583 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 1.0 | 0.986 | 0.817 | 8.1e-250 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.993 | 0.973 | 0.782 | 3.6e-240 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.910 | 0.918 | 0.836 | 3.8e-236 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.547 | 0.797 | 0.337 | 1.9e-36 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.583 | 0.85 | 0.310 | 1e-35 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.543 | 0.784 | 0.322 | 3.9e-35 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.530 | 0.772 | 0.315 | 8.7e-35 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.550 | 0.812 | 0.314 | 1.2e-33 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.356 | 0.630 | 0.334 | 2e-24 | |
| TIGR_CMR|GSU_1909 | 338 | GSU_1909 "ketol-acid reductois | 0.391 | 0.674 | 0.307 | 1.1e-21 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2406 (852.0 bits), Expect = 8.1e-250, P = 8.1e-250
Identities = 483/591 (81%), Positives = 513/591 (86%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----R 52
MAAAT + + SPS SS+TL L N+ SS++KSLR+L T
Sbjct: 1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGAT 60
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSY 472
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSY
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSY 480
Query: 473 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN 532
SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+
Sbjct: 481 SEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDS 540
Query: 533 DAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 583
A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct: 541 GAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 2315 (820.0 bits), Expect = 3.6e-240, P = 3.6e-240
Identities = 463/592 (78%), Positives = 508/592 (85%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKH--LNLASF--SSTAKSLRALKTT-------T 50
A A FS + + +S+ LK++ K LNL SST K+ R+LK
Sbjct: 3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGAN 62
Query: 51 GRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
G GSALSA M S ++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF
Sbjct: 63 GGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAF 122
Query: 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168
GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGT
Sbjct: 123 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGT 182
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK 228
LGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI QS+G DFPK
Sbjct: 183 LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 242
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
NI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPF
Sbjct: 243 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPF 302
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348
TFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK
Sbjct: 303 TFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISK 362
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRF
Sbjct: 363 TISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRF 422
Query: 409 YEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKK 468
YEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKK
Sbjct: 423 YEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKK 482
Query: 469 GHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALV 528
GHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALV
Sbjct: 483 GHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALV 542
Query: 529 AVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 580
AVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV DADFVRPELRQ
Sbjct: 543 AVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2277 (806.6 bits), Expect = 3.8e-236, P = 3.8e-236
Identities = 445/532 (83%), Positives = 479/532 (90%)
Query: 52 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
R A++A +A+ A+ LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK I
Sbjct: 287 ATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTI 346
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
S +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 347 SKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 406
Query: 411 KEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGH 470
KEGLPAFPMG IDQTRMWKVGE+VRSTRP DLGPLHPFTAGVY ALMMAQIE+LRKKGH
Sbjct: 407 KEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGH 466
Query: 471 SYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAV 530
SYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V V
Sbjct: 467 SYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTV 526
Query: 531 DNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 582
D DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct: 527 DKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 114/338 (33%), Positives = 168/338 (49%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+ A G+
Sbjct: 77 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SWEAAVEDGWV 128
Query: 164 E-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSM 222
EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 129 PGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHGFSPVFKDLT 186
Query: 223 GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282
++ P NI VI PKG G +VR L+ +G+ GINSS+AV DV G+A A+ ++
Sbjct: 187 HVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAEEKAIAMAI 241
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A+GS + + TT E+E SD++GERG L+G +HG+ + + ENG A+ TVE
Sbjct: 242 AIGSGYVYKTTFEREVNSDLYGERGCLMGGIHGMFLAQYEVLRENGHTPSEAFNETVEEA 301
Query: 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSV 401
T + +I GM +Y++ S ++ Y + E YE V GSE RS+
Sbjct: 302 TQSLYPLIGKYGMDYMYDACSTTARRGALDWYPRFKDALKPVFEELYESVKNGSETKRSL 361
Query: 402 VLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y KE L I +W+VG+ VR RP
Sbjct: 362 EFNSRSDY-KERLEE-EFQTIRNMEIWRVGKEVRKLRP 397
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 111/358 (31%), Positives = 177/358 (49%)
Query: 84 ISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS AD E + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323
AV QDV G A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + +
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEV 281
Query: 324 FTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
E G + A+ TVE T + +I GM +Y + S ++ +S+ + ++
Sbjct: 282 LRERGHSPSEAFNETVEEATQSLYPLIGANGMDWMYAACSTTARRGAID-WSSRFKDNLK 340
Query: 384 ILY-ECYEDVAAGSEI-RSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
L+ E Y+ V G+E RS+ ++ Y ++ M +I +W+ G+ VRS RP
Sbjct: 341 PLFNELYDSVRDGTETQRSLDYNSQKDYREKYEKE--MQEIRDLEIWRAGKAVRSLRP 396
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 3.9e-35, P = 3.9e-35
Identities = 110/341 (32%), Positives = 170/341 (49%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVV 402
+ +I G+ ++ + S ++ ++L E Y++V G+E RS+
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 403 LAG----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y+KE + +I +WK GE VRS RP
Sbjct: 365 YNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 8.7e-35, P = 8.7e-35
Identities = 104/330 (31%), Positives = 168/330 (50%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAN 311
Query: 354 GMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVVLAGRRFY 409
GM +Y + S ++ ++ + + P LY+ +D GSE RS+ + Y
Sbjct: 312 GMDWMYEACSTTARRGAIDWSPRFKDALKPVFNQLYDSVKD---GSETQRSLDYNSQPDY 368
Query: 410 EKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+E A M +I +W+ G+ VRS RP
Sbjct: 369 -REKYEA-EMEEIRNLEIWRAGKAVRSLRP 396
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 106/337 (31%), Positives = 163/337 (48%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G+
Sbjct: 71 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDGWV 123
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
L + + I V+ L+SDAAQ++ + I +
Sbjct: 124 PGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTH 182
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +VA
Sbjct: 183 VEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVA 237
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS + + TT E+E SD++GERG L+G +HG+ + + ENG + A+ TVE T
Sbjct: 238 IGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEAT 297
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVV 402
+ +I GM +Y++ S ++ Y + + YE G+E RS+
Sbjct: 298 QSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLE 357
Query: 403 LAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+ Y +E L + I +WKVG+ VR RP
Sbjct: 358 FNSQPDY-REKLEK-ELDTIRNMEIWKVGKEVRKLRP 392
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 78/233 (33%), Positives = 122/233 (52%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
V V PK G VRR+Y++GK G+ AV+QD G+A ++AL ++ +G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGV 179
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
F TT ++E +D+FGE+ +L G V ++++ F E G ++AY EC+
Sbjct: 180 FETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229
|
|
| TIGR_CMR|GSU_1909 GSU_1909 "ketol-acid reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 79/257 (30%), Positives = 128/257 (49%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ VIG+GSQG A A NL+DS D+VV GL+ S S A+A AG T +
Sbjct: 18 RVAVIGYGSQGHAHANNLKDSGV----DVVV--GLKADSSSVAKATGAGLT-----VLPT 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK-NI 230
+ + G+D+V++L+ D Q D Y E++ +K + Q P+ +I
Sbjct: 67 ADAVKGADVVMILLPDEIQGDVYREEVGPYLKQGAYLAFGHGFNIHFGQIT----PRPDI 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
VI PKG G VR Y +G G+ A+H D G + +VAL ++ A+G
Sbjct: 123 NVIMAAPKGPGHLVRHEYTRG-----GGVPCLIAIHHDPSGNSRDVALAYASAIGGGRAG 177
Query: 290 -FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
T+ ++E +D+FGE+ +L G + ++++ F E G + ++AY EC+ T +I
Sbjct: 178 IIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYSPEMAY---FECLHETKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
+I G+ + S S
Sbjct: 235 VDLIYEGGIANMRYSIS 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8907 | 0.9108 | 0.8984 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8845 | 0.8765 | 0.8840 | yes | no |
| Q01292 | ILV5_SPIOL | 1, ., 1, ., 1, ., 8, 6 | 0.8159 | 0.9605 | 0.9411 | N/A | no |
| O82043 | ILV5_PEA | 1, ., 1, ., 1, ., 8, 6 | 0.8245 | 0.9897 | 0.9931 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00018719001 | SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shotgun sequence); (588 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00037861001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa) | • | • | • | • | • | 0.982 | ||||
| GSVIVG00029877001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa) | • | • | • | • | • | 0.979 | ||||
| GSVIVG00020486001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa) | • | • | • | • | • | 0.963 | ||||
| GSVIVG00034729001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (393 aa) | • | • | • | 0.960 | ||||||
| GSVIVG00012144001 | SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa) | • | • | • | 0.958 | ||||||
| GSVIVG00020487001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (72 aa) | • | • | 0.917 | |||||||
| GSVIVG00005682001 | SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa) | • | • | • | 0.857 | ||||||
| GSVIVG00026591001 | RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa) | • | • | • | 0.705 | ||||||
| GSVIVG00004313001 | SubName- Full=Chromosome undetermined scaffold_656, whole genome shotgun sequence; (463 aa) | • | • | • | • | 0.697 | |||||
| GSVIVG00010385001 | SubName- Full=Chromosome chr16 scaffold_258, whole genome shotgun sequence; (866 aa) | • | • | • | • | 0.634 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 1e-51 | |
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 5e-51 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 2e-40 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 1e-39 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 5e-34 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 5e-29 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 5e-17 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 2e-13 | |
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 2e-05 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 1e-51
Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 32/335 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV + +I +
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK-LIVDL 224
Query: 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
I G+ + + S + + + +++ G + L
Sbjct: 225 IYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWAL------ 278
Query: 410 EKE-GLPAF-PMGKID-QTRMWKVGERVRSTRPAG 441
E E G PAF K + + + KVG+ +R+ PAG
Sbjct: 279 ENEAGKPAFNTARKYESEHEIEKVGKELRAMVPAG 313
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 5e-51
Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY EC+ +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYF---ECLHEL 233
Query: 346 --ISKIISTQGMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSE 397
I +I G+ + S S + E+ + A M+ + +D+ +G
Sbjct: 234 KLIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMK---KVLKDIQSGEF 288
Query: 398 IRSVVL---AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+ +L AGR E + + + KVG+ +R P
Sbjct: 289 AKEWILENQAGRPKLEAL------REETAEHEIEKVGKELRKMMP 327
|
Length = 338 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 31/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
|
Length = 330 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 1e-39
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 5e-34
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 511
G L+ A E L + G+S EI + + + ++ G+S M D+ STTA G+
Sbjct: 18 GGLQGLIKAGFETLVEAGYS-PEIAYFETLHELKLIVDLIYEGGLSGMRDSISTTAEYGA 76
Query: 512 RKWAPRFD----YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISV 567
W PR IL ++ L + N L+ N +P + ++R V
Sbjct: 77 YLWGPRIITEATKILMKEILKDIQNGTFAKEWLLENSAGNPR--LNKERKEIREHPIEKV 134
Query: 568 PPDADFVRPELR 579
+ PEL+
Sbjct: 135 GKKLRKLMPELK 146
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 5e-29
Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 36/330 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 348
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
++ G+ + +S S D EF + S E E + EI+ A +
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLT---EIQQGEFAKKWI 290
Query: 409 YEKE-GLPAF-PMGKIDQT-RMWKVGERVR 435
E + G P + M K +Q ++ KVGE +R
Sbjct: 291 LENQAGRPTYNAMKKAEQNHQLEKVGEELR 320
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGERGILLG 311
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
|
Length = 487 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---A 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L A
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLENSA 114
Query: 405 GRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
G KE +I + + KVG+++R P
Sbjct: 115 GNPRLNKE------RKEIREHPIEKVGKKLRKLMP 143
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 511
G AL+ A + L + G+ E+V E + + ++ G++ M D S TA G+
Sbjct: 187 GGLTALIKAGFDTLVEAGYQPELAYFETVHE-LKLIVDLIYEGGITGMRDRISNTAEYGA 245
Query: 512 RKWAPRFDYIL 522
L
Sbjct: 246 LTRRRIIKEEL 256
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.98 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.96 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.94 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.94 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.94 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.94 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.93 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.92 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.9 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.9 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.89 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.83 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 99.79 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.73 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.72 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.72 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.69 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.67 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.65 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.64 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.6 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.59 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.56 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.54 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.54 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.52 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.51 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.46 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.4 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.39 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.38 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.38 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.34 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.34 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.33 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.33 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.32 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.3 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.29 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.28 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.25 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.24 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.23 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.22 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.2 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.2 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.2 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.19 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.18 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.17 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.16 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.16 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.13 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.09 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.06 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.06 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.05 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.02 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.02 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.99 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.96 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.96 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.95 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.92 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.91 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.91 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.9 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.89 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.89 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.86 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.85 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.84 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.84 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.83 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.79 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.79 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.74 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.73 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.73 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.73 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.72 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.72 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.72 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.72 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.71 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.7 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.69 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.68 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.68 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.67 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.65 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.65 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.65 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.62 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.6 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.6 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.59 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.59 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.58 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.56 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.55 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.55 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.54 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.53 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 98.51 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.48 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.48 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.46 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.44 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.41 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.4 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.39 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.33 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.32 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.31 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.31 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 98.3 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.28 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.26 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.24 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.15 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.15 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.15 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.13 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.11 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.07 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.03 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.02 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.01 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.01 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.01 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.96 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.96 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.95 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.94 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.92 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.91 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.89 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.86 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.85 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.83 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.7 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.68 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.62 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.61 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.6 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.54 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.52 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.5 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.45 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.35 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.33 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.31 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.28 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.25 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.22 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.2 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.19 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.19 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.18 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.17 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.17 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.13 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.11 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.1 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.08 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.07 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.05 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.03 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.01 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.0 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.99 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.98 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.98 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 96.97 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.95 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.94 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.93 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.92 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.91 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.84 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.79 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.77 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.77 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 96.74 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.73 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.73 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.71 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.68 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.68 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.64 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 96.62 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.53 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.52 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.5 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.49 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.49 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.48 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.46 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.46 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.42 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.42 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.41 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.4 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.4 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.37 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.36 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.36 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.29 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.26 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.25 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.24 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.18 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.16 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.15 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.11 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.97 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 95.89 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.85 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.78 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.72 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.7 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.67 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.62 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.6 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.59 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.59 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.57 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.55 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.53 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.51 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.46 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.45 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.43 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.32 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.31 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 95.24 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.18 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.05 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.01 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.01 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.98 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.97 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 94.94 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.92 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.92 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.9 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.87 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.81 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 94.68 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 94.66 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.61 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 94.55 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.52 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.49 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.46 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 94.41 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.36 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 94.33 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.29 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.26 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.24 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.19 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.14 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 94.12 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 94.11 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.11 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.07 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.0 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.94 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 93.91 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 93.81 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.78 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.76 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.72 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.71 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 93.7 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 93.66 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.62 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.5 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 93.5 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 93.4 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.34 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 93.25 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.25 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.24 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.2 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.2 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 93.17 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.15 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.02 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.99 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.85 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 92.82 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 92.79 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.76 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 92.68 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.65 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.65 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.63 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 92.63 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 92.62 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 92.61 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.6 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 92.49 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 92.45 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.43 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.37 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 92.35 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.3 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 92.23 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.22 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 92.2 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.17 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.14 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 92.13 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.06 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 91.97 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 91.9 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 91.84 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.83 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.8 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 91.76 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 91.76 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 91.6 | |
| PLN00106 | 323 | malate dehydrogenase | 91.59 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 91.55 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 91.51 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 91.49 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.45 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 91.4 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 91.36 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 91.33 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.29 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 91.28 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 91.23 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 91.21 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 91.1 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 91.09 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 91.02 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 90.9 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 90.82 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.78 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 90.72 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 90.62 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.49 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 90.44 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.42 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 90.37 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 90.36 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 90.33 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.14 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.96 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 89.9 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.86 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 89.7 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.62 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 89.6 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 89.36 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 89.36 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 89.33 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 89.23 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 89.18 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 89.17 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 89.16 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 89.14 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 89.04 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 89.01 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 88.94 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 88.85 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 88.81 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 88.67 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.59 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.56 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 88.48 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 88.36 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 88.33 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 88.32 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 88.23 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 88.19 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 88.1 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 87.99 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 87.96 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.87 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 87.8 | |
| PRK08223 | 287 | hypothetical protein; Validated | 87.4 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.39 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.25 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 87.11 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 87.03 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 86.94 | |
| PRK07411 | 390 | hypothetical protein; Validated | 86.8 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 86.61 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 86.53 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 86.47 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 86.35 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 86.3 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 86.11 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 86.04 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 85.95 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 85.69 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 85.66 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.54 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 85.54 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 85.46 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.12 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 84.91 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 84.77 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 84.62 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 84.56 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 84.49 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 84.44 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 84.2 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 84.19 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 84.04 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 84.02 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 83.71 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 83.63 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 83.6 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 83.59 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.54 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 83.49 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 83.48 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 83.42 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 83.35 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 83.13 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 83.13 | |
| PRK00994 | 277 | F420-dependent methylenetetrahydromethanopterin de | 83.07 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.94 | |
| PLN02477 | 410 | glutamate dehydrogenase | 82.81 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 82.8 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 82.71 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 82.61 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 82.45 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 82.38 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 82.31 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 82.28 | |
| PRK05717 | 255 | oxidoreductase; Validated | 82.22 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.06 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 81.99 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 81.97 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 81.72 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 81.64 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 81.58 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 81.56 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 81.5 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 81.48 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 81.46 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 81.41 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 81.29 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 81.05 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 80.9 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 80.89 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 80.8 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 80.74 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.54 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 80.53 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 80.37 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 80.34 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 80.24 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 80.18 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 80.09 |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-90 Score=735.71 Aligned_cols=437 Identities=24% Similarity=0.318 Sum_probs=396.7
Q ss_pred ccccccchhhhhhhh-----cccccceeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE
Q 007951 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (583)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV 145 (583)
.|||||++|++|+++ |++++| |++..+.|+| |+|+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778777 9989999999 9999999999999999999999 999999
Q ss_pred EecCC-----cccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 007951 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (583)
Q Consensus 146 g~r~~-----s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie 220 (583)
|+|.+ ++++++|.+.||. +.+..|++++||+|++++||..+..++++|.|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6799999999997 568999999999999999999999999999999999999999999999874
Q ss_pred cccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 007951 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (583)
Q Consensus 221 ~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~--qd~sgeale~a~ala~aIG~~~--vieTtf~e 296 (583)
++.||+|++||+|+||+||+.||++|.+| +|+|++|+|+ ||++++++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 56999999999999999999999999996 8999999999 8999999999999999999996 89999999
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcc
Q 007951 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (583)
Q Consensus 297 E~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~ 376 (583)
|+++||||||++|||+++++++++||.+|+.|++|++||+++.+++. +|+++|+++||..|++++|+ +++||.|..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~--tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSN--PAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccc--hhhcccccc-
Confidence 99999999999999999999999999999999999999999999985 69999999999999999998 456988743
Q ss_pred cchhHHHHH----HHHHHhccCChhhhHHHHhcccccccCCCCCCc-ch-hhhcChHHHHHHHHHccCCCCCCCCCCcch
Q 007951 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVGERVRSTRPAGDLGPLHPFT 450 (583)
Q Consensus 377 ~~~p~~~~m----~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~-~~-~i~~~~ie~vG~~lR~~~~~gei~~~~~~~ 450 (583)
.+.+|++| +++|++|+||+|+|+|+.+|.. |.+.+. |+ ++.+|++|++-. .+.+|-+++||.
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~-----~~~~l~~~r~~~~~~~~E~~~~------~~~~~~~~~~~e 355 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWAN-----DDKKLLTWREETGKTAFENAPQ------YEGKISEQEYFD 355 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc-----CChHHHHHHHHhhcCchhhccc------ccccchhHHHHh
Confidence 24445555 9999999999999999999763 446555 55 668999999753 566888999999
Q ss_pred hHHHHHHHH-H----HHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHHHHH
Q 007951 451 AGVYAALMM-A----QIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQ 525 (583)
Q Consensus 451 ~g~~~~~~~-a----~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~~~~ 525 (583)
.||||+.|+ | |+|+|++.||+|++||+||+.|+ +++.|||.++||+||+.+||+||+||++...||--+.+ ++
T Consensus 356 rG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~Gl~~M~~~iSdTAeyG~y~~g~~vi~~m-k~ 433 (487)
T PRK05225 356 KGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISDTAEYGNYLFSHAAVPLL-KD 433 (487)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhhHhhcCCcccChHHHHHH-HH
Confidence 999999988 4 59999999999999999999999 99999999999999999999999999999999887555 67
Q ss_pred HHhhhccCCc------------cchhhHHhhhcChHHHHHH
Q 007951 526 ALVAVDNDAP------------INGDLISNFLSDPVHGAIE 554 (583)
Q Consensus 526 ~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~~ 554 (583)
+|..|++|+. ....+.+..++||+++.=+
T Consensus 434 ~l~~Iq~G~fak~~~e~~~g~~~l~~~~~~~~~h~iE~vG~ 474 (487)
T PRK05225 434 FMATLQPGDLGKGLPSNAVDNAQLRDVNEAIRNHPIEQVGK 474 (487)
T ss_pred HHHHcCCCHHHhhHHhccCCcHHHHHHHHHHhcCcHHHHHH
Confidence 8888888843 4556778889999987543
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=623.57 Aligned_cols=315 Identities=32% Similarity=0.541 Sum_probs=296.2
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
+.+..+ +.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|.++||. +.+++|++++
T Consensus 8 d~da~l-~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ 74 (338)
T COG0059 8 DEDADL-DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKR 74 (338)
T ss_pred cccCCh-hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhc
Confidence 445556 59999 9999999999999999999999 999999999999999999999999 6899999999
Q ss_pred CCeEEEeccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCC
Q 007951 179 SDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~ 257 (583)
||+|++++||..|.+||+ +|.|+|++|++|.|+||||++|. ++.||+|++||||+||+||+.||++|++| +
T Consensus 75 ADvim~L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~ 146 (338)
T COG0059 75 ADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----F 146 (338)
T ss_pred CCEEEEeCchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----C
Confidence 999999999999999999 79999999999999999999984 67999999999999999999999999995 8
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHH
Q 007951 258 GINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (583)
Q Consensus 258 Gv~aliAv~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~ 335 (583)
|+|++|+++||+|++++++|++|++++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||.||
T Consensus 147 GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~Ay 226 (338)
T COG0059 147 GVPALIAVHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAY 226 (338)
T ss_pred CceeEEEEEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999999999999986 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccC
Q 007951 336 KNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412 (583)
Q Consensus 336 ~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~ 412 (583)
++|+|+++ +|++||+|+||..|+++||| |++||.|..+.. ..+|+.|++++++||||+|+++|+++++ .
T Consensus 227 fE~lhE~k-lIvdLiyegGi~~M~~siSn--TAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~-----~ 298 (338)
T COG0059 227 FECLHELK-LIVDLIYEGGITNMRYSISN--TAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQ-----A 298 (338)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHHhcCC--HHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhh-----c
Confidence 99999985 89999999999999999998 778999976642 3468999999999999999999999986 5
Q ss_pred CCCCCc-ch-hhhcChHHHHHHHHHccCCCCC
Q 007951 413 GLPAFP-MG-KIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 413 g~~~~~-~~-~i~~~~ie~vG~~lR~~~~~ge 442 (583)
|+|.|. ++ ..++|+||+||++||++|||.+
T Consensus 299 g~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~~ 330 (338)
T COG0059 299 GRPKLEALREETAEHEIEKVGKELRKMMPWEK 330 (338)
T ss_pred CCHHHHHHHHHhhcChHHHHHHHHHHhcchhc
Confidence 889887 44 5589999999999999999975
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=588.41 Aligned_cols=309 Identities=31% Similarity=0.508 Sum_probs=287.9
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
..+.|+| ++|||||+|+||.++|++|+++ |++|+++++. +++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999988876 5678888888987 458999999999999
Q ss_pred EeccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 184 Lavpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
+++|+..+..++. ++.++|++|++|+++|||+++|- +|.||+|++||||+||+||+.||++|.+| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999998889986 69999999999999999999884 57999999999999999999999999996 799999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
|+++||+|+++++++++|+++||++| +++|||++|+++||||||++|||++.+||+++||++|++||+||.||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCC
Q 007951 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (583)
Q Consensus 341 ~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~ 417 (583)
++ +||+|||+|+|+.+|+++||| |++||+|.+++. ..+|+.|+++|++||+|+|||+|+.+|+ .|.|.|
T Consensus 229 e~-kli~dli~e~G~~~m~~~~S~--taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~-----~g~~~~ 300 (335)
T PRK13403 229 EL-KLIVDLMYEGGLTNMRHSISD--TAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQ-----AGRPTY 300 (335)
T ss_pred HH-HHHHHHHHHccHHHHHHhhCc--HHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----CCCHHH
Confidence 99 589999999999999999998 778999977753 4589999999999999999999999976 588887
Q ss_pred c-c-hhhhcChHHHHHHHHHccCCCC
Q 007951 418 P-M-GKIDQTRMWKVGERVRSTRPAG 441 (583)
Q Consensus 418 ~-~-~~i~~~~ie~vG~~lR~~~~~g 441 (583)
+ + +++++|+||+||++||++|+|-
T Consensus 301 ~~~~~~~~~h~ie~vg~~lR~~~~~~ 326 (335)
T PRK13403 301 NAMKKAEQNHQLEKVGEELREMMSWI 326 (335)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCcc
Confidence 7 3 4669999999999999999994
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-68 Score=553.70 Aligned_cols=310 Identities=32% Similarity=0.527 Sum_probs=289.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...++| ++|||||+|+||.++|++|+++ |++|+++++.++++++.+.+.|+.. .+..|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888888899999999873 588999999999999
Q ss_pred eccchHHHHHH-HHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 185 avpd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
++||..+.+++ ++|.+++++|++|+++|||++++.+. .||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 67999999999999999999998754 889999999999999999999999995 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
++++|+++++++++++|++++|+++ +++|||++|+++||||||++|||++.+|++++||++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999995 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc---hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc
Q 007951 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY---YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (583)
Q Consensus 342 l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~---~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~ 418 (583)
++ ||+|||+++|+.+|+++||| |+|||+|..+.. ..+|+.|+++|++||+|+|+|+|+.+|+ .|.|.|+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s~--ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~ 303 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSISN--TAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENK-----AGRPTFK 303 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcCc--HhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCcHHHH
Confidence 95 89999999999999999998 779999977643 4689999999999999999999999976 5778887
Q ss_pred --chhhhcChHHHHHHHHHccCCCCC
Q 007951 419 --MGKIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 419 --~~~i~~~~ie~vG~~lR~~~~~ge 442 (583)
++++++|+||+||++||++|+|.+
T Consensus 304 ~~~~~~~~~~~e~~g~~lr~~~~~~~ 329 (330)
T PRK05479 304 ALRREEAEHPIEKVGAKLRAMMPWIK 329 (330)
T ss_pred HHHHHHhcCcHHHHHHHHHHhccccc
Confidence 346799999999999999999954
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=528.05 Aligned_cols=307 Identities=33% Similarity=0.536 Sum_probs=279.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+| |+|+|||+|+||+++|++|+++ |++++++++.++++++.+.+.|+. +.++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888776778888888987 3468899999999999999
Q ss_pred chHHHH-HHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+.+.. +.++|.+++++|.+|+++|||++++++. .||++++|||+|||+|++.+|++|.+| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995554 5567999999999999999999999865 788899999999999999999999995 7999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~G 344 (583)
+|+++++++++++|++++|..| +++|+|++|+++|+|++||+||||+||++.+++|++|++||||++||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999994 89999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc--hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--ch
Q 007951 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MG 420 (583)
Q Consensus 345 lia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~--~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~ 420 (583)
+++|++++|+..|+++||+ |+|||+|..+.. ..+|+.|+++|++||||+|+|+|+.+++ .|.|.|+ ++
T Consensus 221 -~~~l~~e~g~~~l~~~Vss--taeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~~~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRISN--TAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENE-----AGKPAFNTARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcCC--HHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhcc-----CCcHHHHHHHH
Confidence 9999999999999999997 778999855432 3478899999999999999999999864 5778877 44
Q ss_pred hhhcChHHHHHHHHHccCCCCC
Q 007951 421 KIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 421 ~i~~~~ie~vG~~lR~~~~~ge 442 (583)
++++|+||+||++||++|||++
T Consensus 293 ~~~~~~~e~vg~~lr~~~~~~~ 314 (314)
T TIGR00465 293 YESEHEIEKVGKELRAMVPAGK 314 (314)
T ss_pred HHhCCcHHHHHHHHHHhccCCC
Confidence 6799999999999999999974
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=308.15 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|++ |+|+|||||+||+++|+||||| |++|+|++|.++++|++|+++||. +.+..|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 788 9999999999999999999999 999999999999999999999998 5799999999999999999
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|..|.++|+ +|.|+|++|++|.++|||+++|- .+.||++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 79999999999999999999874 57999999999999999999999999996 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 007951 267 QDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~ 287 (583)
||.|+++++++++|+++||++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=275.30 Aligned_cols=141 Identities=28% Similarity=0.453 Sum_probs=124.8
Q ss_pred hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhh
Q 007951 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (583)
Q Consensus 294 f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~ 373 (583)
|++|+++||||||++|||+++++|+++||++|++||+||.||++|+|+ +++|+++|+++|+.+|+++||| |++||++
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e-~~lI~dli~~~Gi~~M~~~iS~--TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHE-TKLIVDLIYEGGIYGMYDSISD--TAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTS-H--HHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHccHHHHHHhcCC--HHHhHHH
Confidence 679999999999999999999999999999999999999999999999 5799999999999999999997 7789998
Q ss_pred hccc-c-hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCC
Q 007951 374 YSAS-Y-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 374 ~~~~-~-~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~ge 442 (583)
.... + .+++++|+++|++|+||+|+|+|+.+++. |.+.+. ++++++|++|+||++||++|||.+
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~-----g~~~l~~~~~~~~~~~~e~VG~~lR~~~~~~k 145 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQA-----GDPRLNAMREKIRNHPIEKVGEKLRAMMPWMK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHT-----TSHHHHHHHHHHSTSHHHHHHHHHHHTHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcC-----CCHHHHHHHHhhcCCcchhHHHHHHHhccccC
Confidence 5442 3 56899999999999999999999999763 556655 558899999999999999999963
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=278.95 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=196.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++.+|.++ | .+|++.++..++..+.+.++|+.. ..+..+++.++|+|||++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~LavK 71 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAVK 71 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEeC
Confidence 7899999999999999999998 7 378888877666556888888873 5678899999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...+++.++.+ +.++++ |++++|+.+..++. .++ +.+|+|+|||+|..+ |+|++. ++..
T Consensus 72 Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~~ 133 (266)
T COG0345 72 PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISAN 133 (266)
T ss_pred hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eecC
Confidence 9999999999998 667765 68999999999987 777 899999999999999 799999 7778
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
.+++++.++.+.++++++|.. .++.+++|+..|+++||+|| ++|++.+++|+.|+|+++|++++.|++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~ 205 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTV 205 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999975 34445899999999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.| .++|+.++|. ..|+++||.+.
T Consensus 206 ~G-aakll~e~~~~p~~Lr~~VtSPG 230 (266)
T COG0345 206 AG-AAKLLLESGEHPAELRDQVTSPG 230 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCcCCC
Confidence 99 9999999999 79999999754
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=270.37 Aligned_cols=219 Identities=18% Similarity=0.273 Sum_probs=187.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHH-HcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.++ |+ +|++.+++. .+.+.+. +.|+.. +.+..|++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~-~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNV-SNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCH-HHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 63 566655543 3344444 478754 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 57999999999877 5566678999999999998 789999 567
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
+++++.+.++.+..+|..+|.. .+..+++|+..++|+||+|| ++|++.|++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999964 12234688899999999999 79999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
+.| .++|+.++|. ..++++|+.+.
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPG 233 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPG 233 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCc
Confidence 999 9999999988 79999999764
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=246.57 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=182.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHH-HHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~-A~~~G-~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+++|+|||+|+||.+++.+|+++ | .+|++..++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 37899999999999999999987 6 4676666654332222 22232 221 3577888999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
|+||+...++++++.+++++++ +|+++.|+.+..+++ .+|. .+|||+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 567999999888876 4453 58999999999998 789998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~-Gl~~e~A~~~~ 338 (583)
+...+++.+.++.++.+|..+|.. + +..+++|+..|+|+||+|| +++++.|++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~--~------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHV--M------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCE--E------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 668889999999999999999964 1 2223678899999999999 699999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 339 VECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 339 ~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.|++.| .++|+.++|. ..++++|+.+.
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~spg 234 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATKG 234 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCCC
Confidence 999999 9999999986 99999999764
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=240.06 Aligned_cols=213 Identities=18% Similarity=0.253 Sum_probs=178.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++.+|+++ +. ++++.+++.++ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35544443211 24432 4577888899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
|+...++++++.++++++.+|++++|+++..++. .++.+..++++|||.|... |.|+.. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777889999999887765 4455567999999999766 567766 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+.+.+..+.++.+|+.+|.. .+.+++.|+..++++||+|| +++++.|++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999964 12233578888999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcch
Q 007951 344 GIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 344 Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
| .++|+.++|. ..|+|+|+.+.
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spg 226 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPG 226 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9 9999999986 89999999764
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=228.04 Aligned_cols=219 Identities=13% Similarity=0.171 Sum_probs=180.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCccc-HHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s-~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.++ | .++++.+|..++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 8999999999999999999987 6 5677777654333 33344567754 567888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~-a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+.+.++++++.+.++++++|+. ++|+++..++. ..+.+.+|+++|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 999999999999999988887664 69999887765 4456789999999998887 567886 666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
..+.+.+.++.++.+|..+|.. + +..| ++|+..++++|++|+ +++++.|.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~--~---~v~e---~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV--S---VVEE---EDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE--E---EeCH---HHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788899999999999999964 1 1223 467788899999999 78999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcc
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~ 365 (583)
+.| .++++.++|. ..+++.++.+
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~sp 234 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSP 234 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCC
Confidence 998 7899987665 8888999653
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=221.09 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=178.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC---ce-EEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~-ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|||+|+||.+++.+|.+. | .+ +++..|.+. +..+.+...|+.. ..+..++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 545555443 3334444567653 467888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
||+.+.++++++.++++...+|+.++|+++..++. .++.+..++++|||.|... |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998886433567899999888876 5566678999999999866 6889885 456
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
.+.+.++.+.+..+|..+|.... ..| +.+...++++||+|+ +++++.+.+++.|+++++|++...+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999997521 223 456677899999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCcch
Q 007951 343 TGIISKIISTQG-MLAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G-~~~m~d~vS~~~ 366 (583)
.| .++++.+++ ..+++|+|+.+.
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spg 234 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPG 234 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCC
Confidence 99 889988743 389999998754
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=230.01 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=193.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHH-HHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|||||.|+|..+++.++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 76 4444444 4455555 78889875 667789999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
+|+.+.+++.++.+.+..+++ ++.++|+.+..+++ .++...+|||+|||+|... |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 999999999999988888886 56999999888876 5666789999999999998 789996 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
..+++.++.+++..++..+|.. +|.++++++..|.|+|++|+ ++|++.|.+|+.|+||.+|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999975 67777999999999999999 69999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 342 l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++| .+||+.++|. ..++|.||.|.
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPg 231 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPG 231 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCC
Confidence 999 9999999998 99999999765
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=220.78 Aligned_cols=218 Identities=16% Similarity=0.216 Sum_probs=180.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|||+|||+|+||.+++++|+++ |+ ++++.++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999998 76 77776244444456666778864 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...+++.++.+.++++++ |++++|+++..++. ..+.. +++++|||.|... |.+... ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999998989886 56889998776654 33333 7999999999987 456666 5667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
...+.+.++.++.++..+|. ++. ..| +.|+..++++|++|+ +++++.|++++.|+++++|+....+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~---~~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWV---VDE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEE---eCH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77888999999999999995 222 223 577788899999999 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcc
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~ 365 (583)
.| .++|+.++|. ..++++|+.+
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 88 8999988887 8899999974
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=214.53 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=177.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEEecCCcccHHHHHH-cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~ViVg~r~~s~s~~~A~~-~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|+|||+|+||.+++..|.++ | .+|.+..|+.+ +.+...+ .|+.. ..+..++++++|+||+++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEcC
Confidence 7899999999999999999988 7 46666666543 3444443 47653 4677888899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
|..+.++++++.+++ +..+|+++.|++...++. .++.+.+++++|||.|... |.|++. +++..
T Consensus 72 ~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~~ 134 (267)
T PRK11880 72 PQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTANA 134 (267)
T ss_pred HHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecCC
Confidence 999999999999887 344678999998777765 4455678999999998765 456665 66788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+.+.++++.+..+++.+|....+. .| +.|+..++++|++|+ +++++.+.+++.|+|+++|...+.+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~----~e---~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 207 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVD----DE---KQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVL 207 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEEC----Ch---HhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 889999999999999999642111 13 477888999999997 7899999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCcc
Q 007951 344 GIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 344 Glia~li~e~G~--~~m~d~vS~~ 365 (583)
| .++++.+.|. ..++++|+.+
T Consensus 208 g-~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 208 G-AAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCC
Confidence 9 8999998877 8888999864
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=216.77 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|+||.+++.+|.++ |+ +|.+..|+.++....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 5799999999999999999988 63 5666666543332333333 5653 467888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
||+...++++++.++++++++| .+++|+++..++. .++ ..++++|||+|... +.|... ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888865 5777788777765 333 36999999988655 357776 445
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q 340 (583)
....+.+.++.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+..+.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667888899999999999954 12223677788999999999 67999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 341 ~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++.| .++|+.+++. .+|+|+|+.+.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7799998876 88999999754
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-24 Score=230.61 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=115.4
Q ss_pred hhhhhhhHhhHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchh
Q 007951 302 IFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (583)
Q Consensus 302 lfgeqtvLsG~~p-AlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p 380 (583)
-|-++++|+|.+. +.+++.||++|++||+||.||+|++||+ +||++||+|+|+++|+.+||| |||||+|..+ ..
T Consensus 352 ~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhEl-kLIvdLi~e~Gl~~M~~~iSd--TAeyG~y~~g--~~ 426 (487)
T PRK05225 352 EYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISD--TAEYGNYLFS--HA 426 (487)
T ss_pred HHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhh--HhhcCCcccC--hH
Confidence 4558899999877 7899999999999999999999999999 699999999999999999998 7899998442 23
Q ss_pred HHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCCC
Q 007951 381 CMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGDL 443 (583)
Q Consensus 381 ~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~gei 443 (583)
+.+.|+++|++||+|+|+|+| .+|+ .|.|.|+ ++++++|+||+||++||++|+|++.
T Consensus 427 vi~~mk~~l~~Iq~G~fak~~-~e~~-----~g~~~l~~~~~~~~~h~iE~vG~~LR~~m~~m~~ 485 (487)
T PRK05225 427 AVPLLKDFMATLQPGDLGKGL-PSNA-----VDNAQLRDVNEAIRNHPIEQVGKKLRGYMTDMKR 485 (487)
T ss_pred HHHHHHHHHHHcCCCHHHhhH-Hhcc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHhHhhhc
Confidence 446999999999999999999 7765 4667777 4577999999999999999999864
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=203.16 Aligned_cols=197 Identities=18% Similarity=0.264 Sum_probs=167.0
Q ss_pred ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchhhhh
Q 007951 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (583)
Q Consensus 141 ~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~i 219 (583)
.+|+++.|+.++..+.+.+.|+.. ..++.++++++|+||||+||+.+.++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367887776555455556678764 567888999999999999999999999999988776664 679999999888
Q ss_pred hcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhh
Q 007951 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (583)
Q Consensus 220 e~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~ 299 (583)
+. .++.+..++|+|||+|... |.|++. ++...+++.+..+.++.+|..+|.. + +..
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--~------~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--V------ELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--E------EEC
Confidence 76 5666678999999999988 689988 6668889999999999999999964 1 222
Q ss_pred hhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 300 sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++.|+..++|+||+|| +++++.+++++.|+++++|.+++.|++.| .++|+.++|. ..++++|+.+.
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~spg 213 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSPG 213 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCCc
Confidence 3678888999999999 79999999999999999999999999999 9999998876 99999998754
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=198.78 Aligned_cols=215 Identities=16% Similarity=0.187 Sum_probs=163.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|||||+|+||.+++++|++. |+ .+.+..|..++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999987 64 3445555444333334444 3443 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...++++++. +++|++ |++++|+++..++. ..+.+..++++|||.|... +.|++.+ ++.
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998873 567775 56889999888876 4455678999999998886 4678774 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gli 346 (583)
.+.++.+++.+|.... +.+|...|+|+..+...+..-.+++++.+.+++.|+++++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~----~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE----CDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEE----ECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 2578999999997522 124555666665543333333489999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCcch
Q 007951 347 SKI-ISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 347 a~l-i~e~G~--~~m~d~vS~~~ 366 (583)
++| +.+++. ..++++|+.+.
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCC
Confidence 888 577776 89999998754
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=187.59 Aligned_cols=219 Identities=15% Similarity=0.092 Sum_probs=159.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++|++|++. |+++.+..+... .....+...|+. +....+..+++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999998 877666554432 222333344544 2223567888999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
..++++++.+ .++++.+|+++++++...++...-..+....+|..|| ++|... ..+..+....+.|.++++++.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999975433221113456778999999 666542 122222222335788889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 007951 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~l 349 (583)
+.+.++.++.++..+|+. ++..+..+ .+..+++.+.+|.++-... +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 33333333 3456889999999765544 566688889999999888876 5555
Q ss_pred H
Q 007951 350 I 350 (583)
Q Consensus 350 i 350 (583)
.
T Consensus 221 a 221 (359)
T PRK06545 221 A 221 (359)
T ss_pred c
Confidence 5
|
|
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-20 Score=175.21 Aligned_cols=123 Identities=23% Similarity=0.209 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchh---HHHHHHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFD---YILTQQAL 527 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~---~~~~~~~~ 527 (583)
.|.+.+++.+++|+|.++||+|..|+.|+++| +.+++++|+++|+++|+++||+||++|+++|.|||. +.+++++|
T Consensus 17 ~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e-~~lI~dli~~~Gi~~M~~~iS~TAeyG~~~~~~r~~~~~k~~m~~~l 95 (145)
T PF01450_consen 17 CGGVHALVEAGFETLVEAGYSPEIAYFECLHE-TKLIVDLIYEGGIYGMYDSISDTAEYGAYTWGPRIIEAVKPLMKEIL 95 (145)
T ss_dssp THHHHHHHHHHHHHHHHTT--HHHHHHHTHHH-HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHccHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777799999999999999999999999999 999999999999999999999999999999999999 55589999
Q ss_pred hhhccCCccchhhHHhhhcChHHHHHHHHhccCCcceeecCCCCCcchh
Q 007951 528 VAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRP 576 (583)
Q Consensus 528 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (583)
+.|++|+..++-+.++...+|. ..+.|.++|++....|+......||
T Consensus 96 ~~I~~G~fak~~i~e~~~g~~~--l~~~~~~~~~~~~e~VG~~lR~~~~ 142 (145)
T PF01450_consen 96 EDIQSGEFAKEWIEENQAGDPR--LNAMREKIRNHPIEKVGEKLRAMMP 142 (145)
T ss_dssp HHHHTTHHHHHHHHHHHTTSHH--HHHHHHHHSTSHHHHHHHHHHHTHT
T ss_pred HHhcCCcchHHHHHHhcCCCHH--HHHHHHhhcCCcchhHHHHHHHhcc
Confidence 9999999888888888888888 5567999999999888754333333
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=170.56 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=154.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceE-EEEecCCcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~V-iVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|.||+++|+.|+.. |+.+ +++.+.+..+.+.+.+.|++. +...+. .+.+.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 8876 556666666778888888874 222333 67888999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh-hHHhHhccccccCCCceEEEeecCC
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~-vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
+..++++++.|++++|++|+|+.+++...++...-..|+++.||..|| +.|+. ...+| .+..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCccccccc--------CCCEEEEcCCCC
Confidence 999999999999999999999999984433332235666669999999 55663 22333 468899999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCC
Q 007951 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl 329 (583)
.+.+.++.+++++.++|. +++.++.++||+.- +.+++.-+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 889999999999999995 78999999996552 44566666677777777766665
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-17 Score=163.89 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=135.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|+|+|||+|+||+++|+.|++. |++|++.++ +....+.+.+.|.... ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 888766554 4556777878886531 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCH
Q 007951 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg 271 (583)
.++++++.++++++.+|+++++++...++... +....+|+.|| ++|... ..+..+......|.++++++.++.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~---~~~~~~v~~HP-m~G~~~-~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE---KLHPRFVGSHP-MAGTAE-SGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH---HhhCCceeeCC-cCCCCc-chHHHhhHHHhCCCcEEEccCCCCCH
Confidence 99999999999999999999999865443311 11225999999 333321 11222222223468888999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHH
Q 007951 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (583)
Q Consensus 272 eale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl 320 (583)
++++.++.++..+|.. +++.+..+| | ....+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~~h---D---~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPEEH---D---RAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHHHH---H---HHHHHHcchHHHHHHH
Confidence 9999999999999963 555555555 3 4466778888865533
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-16 Score=166.58 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=151.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|+|+||| +|+||.++|+.|++. |++|++..++.+...+.+.+.|+.. ..+..++++++|+||+|+|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888777766544446677778753 4577888999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
..++++++.+++++|++|+++++++ ...+.. .+|.++.||..||. .|+.. ..| .|..+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPm-aGp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPM-FGPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCC-CCCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888764 333433 45668899999993 33321 122 35677788888
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~ 339 (583)
+.+.++.+.+.+++..+|+ +++.++.++|++. .+. ++.-+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~------~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRI------MSVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 7888999999999999996 4666667776433 333 444444667777788888999998876654
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=157.75 Aligned_cols=194 Identities=17% Similarity=0.149 Sum_probs=136.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||+|||+|+||.++|++|++. |+ +|++ .+.++...+.+.+.|+... ..+..++. ++|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~-~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYG-YDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEE-EcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 5899999999999999999988 75 5544 4444555677778887521 34666665 599999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCC------CchhhHHhHhccccccCCCceEEE
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Png------Pg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
.+.+++.++.+ ++++++|+++...+....+...-. ....||+.||+. |.....++| .|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 999999988766653322210001 135799999974 333333333 3677778
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A 334 (583)
++..+.+.++.+.++.+++.+|. +++.++..+|+..- +.+++.-+.+..++.+.+. .+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~ 202 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNI 202 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHH
Confidence 88888888999999999999996 56676666663331 2345555556666666664 45555543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=155.63 Aligned_cols=186 Identities=18% Similarity=0.221 Sum_probs=137.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|+||.++++.|++. |+ +|++.++. +...+.+.+.|+.. ....+..++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 74 66655554 44567777788642 12356778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCC------chhhHHhHhccccccCCCceEEE
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM------GPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngP------g~~vR~lf~~G~e~~G~Gv~ali 263 (583)
...++++++.+++++|.+|+++++++...++...-..+.++.+|..||-.. +....++| .|.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~--------~g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELF--------ENRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHH--------CCCeEEE
Confidence 999999999999999999999988774433221113456778999999432 21222333 3577888
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~ 321 (583)
++....+.++++.++.++..+|.. ++..+.++| +.++++++.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888888889999999999999974 444444444 356888999999765554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=156.60 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=126.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++++.|++. |++|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999987 88877665553 246677778764 45777776 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl~eI-~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
..++++++ .++++++++|+++.+++ +..++. .++.+.+||++||+.+...-...| .+.+.++++.
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~~--------~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGGW--------AGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcccc--------CCCeEEEecc
Confidence 99999998 68899999999887764 334443 456678999999976444311111 3456655543
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 267 ----qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
.+.++++++.++.+++.+|+ ++++++.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 45577899999999999996 6888899999555
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-15 Score=168.94 Aligned_cols=215 Identities=15% Similarity=0.099 Sum_probs=153.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|+||.++++.|+.. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 73 66555544 44467777888752 12456778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCc--hhhHHhHhccccccCCCceEEEe
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMG--PSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg--~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++++++.++++++.+|+++++++ +..++. .++. ..++++|+.|. .... .+.........|.+++++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~~-g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEKS-GVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCcc-hhhhhhhHHhCCCeEEEE
Confidence 99999999999999999999999987 444433 3332 13445555552 2211 010000011134567788
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+....+.++.+.++.+++.+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|.. ..+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888999999999999999963 22222 2 345577899999999 777888888877764 467888888776
Q ss_pred HHHHHHH
Q 007951 344 GIISKII 350 (583)
Q Consensus 344 Glia~li 350 (583)
+ ++++.
T Consensus 221 ~-~tRia 226 (735)
T PRK14806 221 D-FTRIA 226 (735)
T ss_pred c-ccccc
Confidence 5 56665
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=151.93 Aligned_cols=189 Identities=20% Similarity=0.193 Sum_probs=130.8
Q ss_pred HHHHHHHhhhhhcCC--ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCC
Q 007951 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (583)
Q Consensus 126 ~A~nLrdsl~~~g~G--~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk 203 (583)
+|+.|+++ | ++ +++.+.++...+.|++.|+... ..+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 6 45 4677777788899999999842 22336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 007951 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (583)
Q Consensus 204 ~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~a 283 (583)
+|++|+|+++++...++...-.+|.+++||.+|| +.|++. ..|.........|.++++++..+.+.++++.++.++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e~-~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPEK-SGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTSS-SSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCcc-ccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999974433222225567899999999 666642 23333333445689999999999888999999999999
Q ss_pred hCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHH
Q 007951 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (583)
Q Consensus 284 IG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e 332 (583)
+|+ +++.++.++|++.- +.+++.-+.+.-++...+.+.+.+.+
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~ 191 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDP 191 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 997 68888999996663 33444444455566655554443333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=153.15 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|+|||+ |+||+++|+.|++. .+++|+ +.+.. |....+..+++++||+||+|+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~---------------d~~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA---------------DPGSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC---------------ccccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166764 55431 1113467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~---Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
..++++++.++ +++|++|+|+++++...++. ..+.+.+||..|| +.|++...+| +|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf--------~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTL--------KGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCccc--------CCCeEEEeCCC
Confidence 99999999876 89999999999998544333 1234568999999 5566532233 57899888764
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
..+..+.++.|++.+|+ ++++++.++||+.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 34557889999999996 6888999999655
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=145.30 Aligned_cols=250 Identities=13% Similarity=0.159 Sum_probs=157.9
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCcc----cHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----s~~~A~~~G~~~~d~ 167 (583)
+||.|-|.||| |.++|.+|.+. |++|++++++.+. .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 57888888887 88999999988 9998888775431 345566778764
Q ss_pred CcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCchhhh----hhcccccCCCCccEEEeccCCCch
Q 007951 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~----ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
..+..+++++||+||+++|+.. ..++++++.+++++|++|++++.+.... +.. .++.....++++|..|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5678889999999999999988 6789999999999999988877665332 222 223222233444444443
Q ss_pred hhHHhHhccccccCCCceEEE-----eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH--
Q 007951 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~ali-----Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-- 315 (583)
.. |.+ +.|... + +.....+.++++.+..+++++|.. ++... + ........+...+.+
T Consensus 148 v~------Gae--~g~l~V-m~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VP------GTP--QHGHYV-IAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cc------ccc--cchheE-EeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 31 000 112222 2 233345788999999999999963 32221 1 233332222222222
Q ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccc-------hhHHHH
Q 007951 316 ---IVESLFRRFTENG-MNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY-------YPCMEI 384 (583)
Q Consensus 316 ---lieAl~d~~Ve~G-l~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~-------~p~~~~ 384 (583)
+.|+ +..+.+.| .|++++.+.+.|++.| +++|+.++|+..|.+.+... +--+.+-+-.. .-..++
T Consensus 212 ~a~~aE~-~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 287 (342)
T PRK12557 212 LSGVLDY-YSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNPE--LLLRSASSMHLLEKQKDLDAALEI 287 (342)
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCHH--HHhhhHhhCCcchhhhhHHHHHHH
Confidence 2222 22334444 5556677789999998 99999999999999987752 22222211111 124667
Q ss_pred HHHHHHhccC
Q 007951 385 LYECYEDVAA 394 (583)
Q Consensus 385 m~e~~~~I~s 394 (583)
++++++++..
T Consensus 288 ~~~~~~~~~~ 297 (342)
T PRK12557 288 LENLDEDLLK 297 (342)
T ss_pred HHHHHHHHhh
Confidence 7888888643
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=139.91 Aligned_cols=217 Identities=12% Similarity=0.138 Sum_probs=143.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----cCceecC----------CCcCCHhhh
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----~G~~~~d----------~t~~d~~Ea 175 (583)
+++|+|||+|+||.++|..|..+ |++|++.++.. ...+.+.+ .|..... ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999988 98887766543 33333332 1210000 013567788
Q ss_pred hccCCeEEEeccchH--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 176 v~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999875 457888898888888776 6888988776655 3444568999999999866
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHH
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e 332 (583)
+. .. .+++....+.+.++.+..++..+|...+.. ..+ ..-| ++...+.+++.-+...+.+.|++++
T Consensus 145 ---~~-l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~---~~d--~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 145 ---IP-LV-EVVRGDKTSPQTVATTMALLRSIGKRPVLV---KKD--IPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ---Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEE---cCC--CCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 12 22 355677789999999999999999742111 011 1111 2233334444444455566678998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 007951 333 LAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (583)
Q Consensus 333 ~A~~~~~q~l------~Glia~li~e~G~~~m~d~ 361 (583)
+.....-+.. +| .-+++-..|+..+.+.
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~~~ 244 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHLAV 244 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHHHH
Confidence 8777654331 23 3445555666544433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=154.52 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=132.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILa 185 (583)
.+++ ++|||||+|+||+++|++|++. |++|++.++.. . .+.+.+.|+.. ..+.++++. .+|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 3466 8999999999999999999988 88887666653 2 25566778763 567778775 59999999
Q ss_pred ccchHHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~-~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
+|+....++++++.+ .+++|++|+++.+.+ +..+.. .+|.++++|+.||+.....-+..|.. ..+...|.
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~-- 506 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV-- 506 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc--
Confidence 999999999999875 689999999887764 334433 55678899999996654431111111 00011111
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~ 330 (583)
+........+..+..+.++..+|+ ++++++.++|++. .+.+-.+|. .+...+++.|++
T Consensus 507 -~v~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 507 -RIGSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred -EeCCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHH---HHHHHHHHCCCc
Confidence 111222233556667899999996 7889999999633 223334444 334777778875
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=136.66 Aligned_cols=226 Identities=14% Similarity=0.154 Sum_probs=165.7
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~A~~~G~~~~d~ 167 (583)
|||.|-|.||| |.+||.+|.++ |++|+++++..+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 57888888887 88999999998 999998877533 2345677788875
Q ss_pred CcCCHhhhhccCCeEEEeccchHHH-HHHHHHHhcCCCCcEEEEecCch---hhhhhccccc-CCCCccEEEeccC-CCc
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLD-FPKNIGVIAVCPK-GMG 241 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~-~p~dv~VI~v~Pn-gPg 241 (583)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-+. ++++=+..+. -++|+.|...||- -|+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678899999999999999988875 78888999999999999886664 2222111222 2579999999993 355
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHH----H
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pA----l 316 (583)
+.-.+.|.-+ |... .-..-+++++++....+++.+|.. +++. .++.+..+-+|-.+.+ -
T Consensus 151 ~~~~~~~~~~------~~~~--~~~~~A~ee~i~~~~el~~~~~~~~~~~p--------a~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 151 TPQHGHYVIG------GKPT--AGKEMATEEQISKCVELAKSTGKKAYVVP--------ADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCceeeec------cccc--cccccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHHHHHHHHHHH
Confidence 5533344442 2221 124457899999999999999975 2232 2566565555555444 3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 317 VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 317 ieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
+-.-++.+++ .|-|.+++-..+.+++.. ++.|+..+|+..|.+.+..
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~p 262 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAINP 262 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH
Confidence 4455666654 699999999999999875 9999999999999998875
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-13 Score=140.66 Aligned_cols=181 Identities=13% Similarity=0.079 Sum_probs=127.8
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 110 gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
.+++|+||| +|.||+++|+.|++. |++|.+.++.. ..+..+++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999998 99887766531 11456778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCC
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
....++++++.+ +++|++|+++++++...+....-..+ .+||..||.. |+.. .+ ..|...++ ...
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~-G~~~-----~~----~~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMF-GPDV-----GS----LAKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCC-CCCC-----cc----cCCCEEEE--cCC
Confidence 999999999998 99999999998875322221100222 2699999933 3331 11 12344433 334
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHH
Q 007951 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.+.++.+.++.++..+|+ +++.++..+|++.- +.++ .+|- +.-++...+.+.|.+.+....
T Consensus 218 ~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vs-hLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQ-ALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred CCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 466788999999999996 68888888885552 2344 3355 445556666667888776544
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=153.04 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=121.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
++|+|||+|+||+++|++|++. |++|++..+.. ..+.+.+.|+.. ..+..+++ +++|+||+|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 88876666552 235677888764 56777755 56999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee----
Q 007951 191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV---- 265 (583)
Q Consensus 191 ~~~Vl~eI~-~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv---- 265 (583)
..++++++. +++++|++|+++..++...++...-.+|.+.+||..||.. |+.. ...| -.|.+.++..
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~~~~ 192 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKVRIG 192 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeeccCC
Confidence 999999986 7899999999998887321111111456788999999943 5542 1111 1234454542
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
......+..+..+.+|..+|+ ++++++.++|++.
T Consensus 193 ~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~ 226 (667)
T PLN02712 193 NEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKY 226 (667)
T ss_pred CccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH
Confidence 222223456777899999996 7888899999544
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.8e-13 Score=134.91 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=116.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----------HHHHHcCceec--------C-CCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~----------~~A~~~G~~~~--------d-~t~~d 171 (583)
++||+|||.|.||.++|..+..+ |++|++.+++.++.. +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 47899999999999999999988 988877655433211 23334442100 0 00234
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
. +.+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 77 ~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~---- 148 (282)
T PRK05808 77 L-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM---- 148 (282)
T ss_pred H-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC----
Confidence 4 457999999999998766 67999999999999987 7889998887765 33344579999999999883
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 --------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 --------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred --------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 4564 6778899999999999999999975
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=136.68 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=143.0
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH------------------HcC-ceecCCCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~d~t~~d 171 (583)
|+||+|||+|+||.++|.+|..+ |++|++.++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 48999999999999999999998 9999888776443211100 012 332 467
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+.+++++||+|+.++|++.. ..++.++.+.++++++| +-++|+.+..+.+ .+...-.++..||+.|.+..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~~---- 146 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYLL---- 146 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcccC----
Confidence 88899999999999998864 34778888888888765 4668877766654 33344578999999988651
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHc
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTEN 327 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~ 327 (583)
--..++.+...+.+.++.+..++..+|...+.- +...+ ..+++-+.+ ++.-++..+.+.
T Consensus 147 ----------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~-----~k~~~-----gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 147 ----------PLVELVGGGKTSPETIRRAKEILREIGMKPVHI-----AKEID-----AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred ----------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEee-----cCCCc-----chhHHHHHHHHHHHHHHHHHcC
Confidence 222466677788999999999999999652211 11111 123333333 334444555577
Q ss_pred CCCHHHHHHHHHHHH------HHH--HHHHH-HHhcHHHHHHhcCc
Q 007951 328 GMNEDLAYKNTVECI------TGI--ISKII-STQGMLAVYNSFSG 364 (583)
Q Consensus 328 Gl~~e~A~~~~~q~l------~Gl--ia~li-~e~G~~~m~d~vS~ 364 (583)
|+++++.....-+.. +|+ ..++. .+.|+..+.+++..
T Consensus 207 ~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~ 252 (495)
T PRK07531 207 IATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP 252 (495)
T ss_pred CCCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence 899998877654431 232 23443 25555555555544
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-12 Score=128.73 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=110.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+||+|||+|+||.+||.||.+. |+.+.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998877788888889886 67889999999999999998887
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 192 ~-~Vl~---eI~~~Lk~GaiL~~a~G~~i~~ie~-~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
. +|+. .+.+.++||+++++++-+....-.+ ....-..+..++ =+|-.-+.. ... .|.-.+. +.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLtim-vG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLTIM-VG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceEEE-eC
Confidence 6 5774 5999999999999998765221100 000112344444 244211111 011 3444433 34
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 007951 267 QDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~ 287 (583)
. +.++.+.++-+++.+|..
T Consensus 139 G--~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN 157 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc
Confidence 4 678999999999999974
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-12 Score=128.24 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceec--------CCCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~--------d~t~~d 171 (583)
++||+|||+|.||.++|.+|..+ |++|++.+++.++ .+. ..+.|.... .-+..+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999998 9998877665332 221 222332100 001233
Q ss_pred HhhhhccCCeEEEecc--chHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavp--d~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
..+++++||+||.++| ++....++.++.+.++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 555567888999999999987 4889998877755 33344689999998887661
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
. . ..++++...+.+.++.++.++..+|..
T Consensus 150 --------~-l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 --------K-L-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred --------c-e-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 1 2 346667888999999999999999975
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=111.25 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=73.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEE-ecCCcccHHHHHHcCceecCCCcC-CHhhhhccCCeEEEecc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~-d~~Eav~~ADIVILavp 187 (583)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.+... .. +..|+++++|+||+++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999998 8 688866 666666667778888654 34 78999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-EecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~-~a~G 213 (583)
|+...++++++ +.+.++++|+ .++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888754 5554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-12 Score=135.08 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccc-cccccchhHHH---HHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS-RKWAPRFDYIL---TQQA 526 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~-~~w~~~f~~~~---~~~~ 526 (583)
.|-+.+++.|++|+|.+.|++|..|++|++.|. ..+.+||.++|++||+.+||+||+||. ..|.+.+++.. ++++
T Consensus 198 ~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~he~-kli~dli~e~G~~~m~~~~S~taeyG~~~~g~~ii~~~~k~~m~~~ 276 (335)
T PRK13403 198 CGGVTALVKAGFETLTEGGYRPEIAYFECLHEL-KLIVDLMYEGGLTNMRHSISDTAEFGDYVTGSRIVTDETKKEMKRV 276 (335)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhhCcHHhcCCccCCCcccCHHHHHHHHHH
Confidence 444555788999999999999999999999999 999999999999999999999999999 56777777766 7788
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCCcce
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTVD 564 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (583)
+..|++|+- ....+..+.++||++..=+.-.+|+|-++
T Consensus 277 l~~iq~g~fa~~~~~e~~~g~~~~~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 277 LTEIQQGEFAKKWILENQAGRPTYNAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred HHHhcCCHHHHHHHHHhhCCCHHHHHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 888888843 44567778899999988877777777543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=121.24 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=109.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
|||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 6899997 899999999999998 88888887765443333221 13210 001246678899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-----------------hhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-----------------~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
+++|++.+.++++++.+.++. ++| ..+.|+.+ ..++. .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 655 46677764 22333 455557899999999988754
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aI-G~~ 287 (583)
. .. .+.+...+++ . | ++++++.+.+|...+ |+.
T Consensus 150 ~-~~-----~~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 D-VD-----DEVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred C-CC-----CCCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 3 11 1234555444 3 3 455999999999999 974
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=122.69 Aligned_cols=194 Identities=13% Similarity=0.056 Sum_probs=124.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|||+|||+|+||.+++++|.++ |++|.++++.. + .+...+.|... +.+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999998 99888777653 2 34555677764 56888999999999999998854
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 192 -ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 192 -~~Vl~---eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
.+++. .+.+.+++|++|++++...... +.+ ..-..++.++- +|-.-+.. ..+. |...+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56663 3677789999999998776431 211 11134777776 68443332 2222 3433333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTt-f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.. +.+.++.++.++..+|.. ++... .-.=...++.. ...+...+.++.|++ ..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~-~~~~G~~G~g~~~Kl~~-N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKN-ITLVGGNGDGQTCKVAN-QIIVALNIEAVSEAL-LFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCC-cEEeCCccHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 33 577899999999999964 22111 11111112211 222222344455553 245789999998774
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-11 Score=122.93 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=101.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------------ceecCCCcCCHhhhh
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~d~t~~d~~Eav 176 (583)
++||+|||+|+||.++|.+|.++ |++|.+..+.. +..+...+.| +.. ..+..+++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 37899999999999999999998 99887776653 3344444432 221 35677888
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe-cCchhh-------hhhcccccCCC-CccEEEeccCCCchhhHHh
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~-------~ie~~~i~~p~-dv~VI~v~PngPg~~vR~l 247 (583)
+++|+||+++|+....++++++.+.++++++|+.. .|+... .+++ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 99999999999998889999999999999876654 487531 2222 2222 133556667554433
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~ 286 (583)
+.|.+.++... ..+.+..+.+..++...|.
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCE
Confidence 12333322222 2256778888899988885
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=118.39 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=100.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++||||||+|+||.++|++|.++ |++|.++++.. ...+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 48999999999999999999999 99998877654 4456666778876 7899999999999999999855
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~-~~Vl~e--I~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
+ .+++.+ +.+.+++|+++++.+-.... .+.+ ..-..++.+|- +|-.-++. .-. .|.-.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~-------~g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAE-------EGTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHH-------HTTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccc-------ccceEEEc
Confidence 5 678888 99999999999988776532 2222 11134666663 34111111 111 24433233
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 007951 265 VHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~ 286 (583)
.. +.++.+.++.+++.+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 46789999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-12 Score=133.30 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccc-hhHHH---HHHHH
Q 007951 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPR-FDYIL---TQQAL 527 (583)
Q Consensus 452 g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~-f~~~~---~~~~~ 527 (583)
|-+++++.+++|+|.+.|++|.++++|++.|. +.+.+||.++||+||+.+||+||+||.+.|.|| +++.. +++++
T Consensus 201 gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e~-k~i~dl~~~~g~~~m~~~~s~ta~~g~~~~~~~~~~~~~~~~m~~~~ 279 (330)
T PRK05479 201 GGLTELIKAGFETLVEAGYQPEMAYFECLHEL-KLIVDLIYEGGIANMRYSISNTAEYGDYVSGPRVITEETKKEMKEVL 279 (330)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcCcHhhcCccccCCcccCHHHHHHHHHHH
Confidence 33445778999999999999999999999997 799999999999999999999999999877765 44444 67888
Q ss_pred hhhccCC-------------ccchhhHHhhhcChHHHHHHHHhccCCcc
Q 007951 528 VAVDNDA-------------PINGDLISNFLSDPVHGAIEVCAQLRPTV 563 (583)
Q Consensus 528 ~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
..|++|+ +....+....++||++..=+.-..|+|-.
T Consensus 280 ~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~lr~~~~~~ 328 (330)
T PRK05479 280 KDIQSGEFAKEWILENKAGRPTFKALRREEAEHPIEKVGAKLRAMMPWI 328 (330)
T ss_pred HHcCCCHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHhcccc
Confidence 8888883 35556677888999998877777776653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-10 Score=116.65 Aligned_cols=213 Identities=17% Similarity=0.199 Sum_probs=135.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------------------------Cceec
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-------------------------G~~~~ 165 (583)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 58999999999999999999988 999877766533 23333211 1221
Q ss_pred CCCcCCHhhhhccCCeEEEeccch--HHHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~--a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
..+.++++++||+||.++|.+ ...++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||-.|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 457788899999999999966 45678899999999999874 555555544443 223334799999977755
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhh-HHHHHHHHHH
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLF 321 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG-~~pAlieAl~ 321 (583)
. .....+.++...+.+.++.+.+++..+|...++- ..+ .. +-+.+ .+.+++..++
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v---~~d-~p------gfi~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVL---KKE-QP------GYILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe---cCC-CC------CHhHHHHHHHHHHHHH
Confidence 4 2334466788889999999999999999642211 011 11 11222 2223333333
Q ss_pred HHHHHcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 007951 322 RRFTENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSFS 363 (583)
Q Consensus 322 d~~Ve~Gl-~~e~A~~~---~~q~l~Glia~li~e~G~~~m~d~vS 363 (583)
.+++.|+ ++++--.. ....-+| .-+++-..|++.+++...
T Consensus 205 -~l~~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~~ 248 (287)
T PRK08293 205 -ALWAKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNITS 248 (287)
T ss_pred -HHHHcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHHH
Confidence 3467775 46544332 2222234 345666677765555443
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=120.12 Aligned_cols=198 Identities=15% Similarity=0.115 Sum_probs=123.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~---ADIVILavpd 188 (583)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 5899999999999999999998 999887776543 445556678764 5678888776 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. ...++++++.+.+++|++|++.+.... ..+.+ . .-..++.++ =+|-.-+.. . . -.|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~--a-----~~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---G--L-----RNGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---H--H-----hcCC-e-EE
Confidence 8 667889999999999999998866542 22211 1 112456664 455222211 0 0 1355 3 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC--cccccc-hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSP--FTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKNTV 339 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~--~vieTt-f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~G--l~~e~A~~~~~ 339 (583)
+.. +.++.+.++.+++.+|.. .++..- .-.=...++. -+.++.+.+.++.|++ ..+.+.| ++++..+..--
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aEa~-~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAEGL-ELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcccCCCHHHHHHHHc
Confidence 454 567889999999999961 111110 0011111111 1222233333344443 3456778 88887766533
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-10 Score=116.75 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=103.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh---hccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea---v~~ADIVILavpd 188 (583)
|+|||||+|+||.++|++|.+. |++|.+++++.+ ..+...+.|... ..+..++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999998 999887766544 455666667653 3455554 4578999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
....++++++.+.+++|++|++.+... .....+ . .-..+++++-....+....- -.|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~-~-~~~~g~~~vda~vsGg~~~a-----------~~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK-L-LKEKGIHLLDCGTSGGVWGR-----------ERGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH-H-HHhcCCeEEecCCCCCHHHH-----------hcCC-e-eee
Confidence 988899999999999999998876542 111111 1 22356777764443321111 1353 3 334
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 007951 266 HQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~ 286 (583)
.. +.++.+.++.+++.+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 57889999999999996
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-10 Score=118.44 Aligned_cols=196 Identities=14% Similarity=0.115 Sum_probs=122.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
+||+|||+|+||.++|.+|.+. |++|.+++++.+ ..+...+.|... ..+..++++++|+||+++|+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~~ 70 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGDL 70 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHHH
Confidence 6899999999999999999998 998887776544 455556667654 5688899999999999999986
Q ss_pred HHHHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++. .+.+.+++|+++++.+-+... .+.. .....++.++ =+|-.-+... -. .|...++.
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~~---a~-------~g~l~~~~ 137 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSDN---AI-------TGTLLLLA 137 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHHH---HH-------hCcEEEEE
Confidence 455664 477888999998877665432 2211 0112456665 3563322220 11 34444333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCccccc-chhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieT-tf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
.. +.+..+.++.+++.+|.. ++.. ..-.=...++. .-.++++..+++--.+..+.+.|++++..+..
T Consensus 138 -gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~ 205 (296)
T PRK15461 138 -GG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKV 205 (296)
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 567899999999999964 2221 11011111221 11133333333333344567899998876544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=118.18 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=111.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--------------cCceecC---------C
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--------------~G~~~~d---------~ 167 (583)
|++|+|||+|.||.++|..|.++ |++|++.+++. ...+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 58999999999999999999998 99887766553 33332211 1211000 0
Q ss_pred CcCCHhhhhccCCeEEEeccchH--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 168 TLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
...+. +++++||+||+++|++. ..++++++.+.++++++| +-++|+.+..+.. .++..-+++++||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 67899999999999886 357888999999999875 4678887776655 33444579999999998883
Q ss_pred HHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++. +..++.++.+..+.+..++..+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2443 2468888999999999999999974
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-10 Score=115.37 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=121.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHH
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~ 192 (583)
||||||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999998 99988776654 4466666777754 567889999999999999987554
Q ss_pred -HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 193 -~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
.++ +.+.+.+++|++|++.+.+... .+.+ ....+++.++- +|- .+... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv-~g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APV-SGGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCC-CCCHH--HHh-------cCCEEEEe-
Confidence 454 3477888999999887766532 2222 01124677775 572 22211 111 24444333
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh-hHhhHHHH-HHHHHH---HHHHHcCCCHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLF---RRFTENGMNEDLAYKN 337 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt-vLsG~~pA-lieAl~---d~~Ve~Gl~~e~A~~~ 337 (583)
.. +++..+.++.++..+|.. ++..-... . ++.. .+.+.+-+ .++++. ..+.+.|+++++.+..
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g~~g---~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~ 203 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVGGNG---D---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQA 203 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeCCCC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 468899999999999964 22211111 0 1111 12222222 333333 4456889999877654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=116.66 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=109.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cC-------------ceecC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G-------------~~~~d 166 (583)
|++|+|||.|.||.++|..|.++ |++|++.++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999998 999887766533 3333221 11 121
Q ss_pred CCcCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
..+..+++++||+||.|+|++... .++.++.+.++++++| +..+.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 356778999999999999988753 5778898999999977 5677777666544 2223346788888655533
Q ss_pred hHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+--..++.+...+.+.++.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233446667788999999999999999964
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=120.24 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=94.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--------G~~~~d--~t~~d~~Eav~~ADI 181 (583)
+||+|||+|+||.++|.+|.+. |++|.++.|..++ .+...+. |..... ....+..|+++.+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999998 9998888775333 2323222 311000 014577888999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEE-EEecCch-----hhhhhcccc--cCCCCccEEEeccCCCchhhHHhHhcccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-----i~~ie~~~i--~~p~dv~VI~v~PngPg~~vR~lf~~G~e 253 (583)
||+++|+....++++ .++++.+| ..+.|+. ...+.+ .+ ....++ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~~----~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETLA----GLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHHH----hcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 999999997766654 45677654 4667764 222221 00 001222 356777665544
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 254 ~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.|.+.+... ...+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVV-ASPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEE
Confidence 2444432222 223567788899999988853
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=124.05 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=105.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhcc---CCeEEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~---ADIVIL 184 (583)
+.+|||||+|+||.+||+||.++ |++|.|++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99999998876554433321 14320 0014678888876 999999
Q ss_pred eccchHHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 185 avpd~a~~-~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
++|+.... +|++.+.+.+++|++|++.+-.... ...+ . .-.+++.++ -+|-.-|.. .. -.|.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~-~-l~~~Gi~fl-dapVSGG~~------gA----~~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK-E-AAEKGLLYL-GMGVSGGEE------GA----RNGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHcCCeEE-eCCCcCCHH------Hh----cCCC-
Confidence 99987765 5778899999999999988655321 1111 1 113567766 567332222 11 1454
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~ 286 (583)
+ +-+.. +.++.+.++-+++.+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 45565 57799999999999995
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=113.86 Aligned_cols=193 Identities=18% Similarity=0.121 Sum_probs=121.1
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHH
Q 007951 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (583)
Q Consensus 116 IIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~V 194 (583)
|||+|+||.++|++|.++ |++|++++++.+ ..+...+.|... ..+..++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999998 999888776644 456666777764 5688899999999999999855 4677
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 195 l---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
+ +.+.+.+++|++|++.+++.....+.. ......++.+|- +|-.-+.. .... |...+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~~---~a~~-------g~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGVG---GARA-------GTLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCHH---HHhh-------CcEEEEE-CC--C
Confidence 7 578889999999999988764322110 011124677775 36332222 2233 3444333 33 4
Q ss_pred HHHHHHHHHHHHHhCCCcccccch-hhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf-~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.+..+.+..++..+|.. ++..-. ..-...++.. ...+.+.+.++.|++ ..+.+.|++++..+.
T Consensus 136 ~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~~-n~~~~~~~~~~~Ea~-~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKICN-NMLLGISMIGTAEAM-ALGEKLGLDPKVLFE 199 (288)
T ss_pred HHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 57889999999999964 222111 1111111211 111222222333333 345688999886654
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=112.65 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=123.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~~ 170 (583)
|++|+|||.|.||.++|.+|.++ |++|++.++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999998 999888776533 2332 2244532100 1246
Q ss_pred CHhhhhccCCeEEEeccchH--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+..++++++|+|+.++|+.. ...++.++.+..++..+|. -+++..+..+.+ .++..-.++..||-.|.+..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 4557778877766665543 334444444544 33444579999997665441
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHH-HHHHHHHHHHHHH
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~-pAlieAl~d~~Ve 326 (583)
. -..++++...+.+.++.++.++..+|.. ++.. ..+ ... | +++-+ .+++.-++..+.+
T Consensus 149 ----------~-lveiv~~~~t~~~~~~~~~~~~~~lG~~-~v~v--~~~-~~G-~-----i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------P-VVEVVPAPWTAPATLARAEALYRAAGQS-PVRL--RRE-IDG-F-----VLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------c-eEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe--cCC-Ccc-H-----HHHHHHHHHHHHHHHHHHc
Confidence 1 1236667778899999999999999964 2211 011 111 1 22222 2334444444556
Q ss_pred cCCCHHHHHHHH
Q 007951 327 NGMNEDLAYKNT 338 (583)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (583)
.|+++++.....
T Consensus 208 g~~~~~~id~~~ 219 (308)
T PRK06129 208 GVASVDDIDAVI 219 (308)
T ss_pred CCCCHHHHHHHH
Confidence 678998876654
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-11 Score=110.19 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||+|||.|+.|.++++.|.+. |++|......+..+.+++.+. .. +....+..|+++++|+|||+|||+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7899999999999999999998 987644333333444444432 21 22256778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhcccccCCCCccEEEecc
Q 007951 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 192 ~~Vl~eI~~~--Lk~GaiL~~a~G~~-i~~ie~~~i~~p~dv~VI~v~P 237 (583)
.+++++|... +++|++|.+++|-. ...++. .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999964 332221 1124667777777
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=112.05 Aligned_cols=147 Identities=17% Similarity=0.126 Sum_probs=105.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~---ADIVILavpd 188 (583)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+..|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999998 999888776643 445556678775 5678888775 6999999999
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. ...++++.+.+.+++|++|++.+.... ..+.. . .-..++.++- +|..-+..- .+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~~d-apvsG~~~~----a~------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE-L-LAEKGIHFVD-VGTSGGVWG----LE------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH-H-HHHcCCEEEe-CCCCcCHHH----Hh------cCC-eEE-
Confidence 8 667788889999999998887755432 11211 1 1135778875 784433221 11 354 433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 007951 265 VHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~ 286 (583)
+.. +.+..+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 343 57789999999999997
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-10 Score=113.47 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=108.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec--------C-CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~--------d-~t~~ 170 (583)
++||+|||.|.||.++|.+|..+ |++|++.++..+ ..+.+.+ .|.... . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999998 999887766533 2333221 232100 0 0134
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+. +.+++||+||.++|.+.. ..++.+|.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997643 467889999999999864 888888766655 22233578888886666652
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++ - +.++...+.+.++.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233 2 4557778899999999999999964
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=111.72 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=101.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|+|||+|.||.++|.+|.+. |++|++++++ ....+.+.+.|... +.+..++++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999988 8888766554 34455566677654 56788999999999999997766
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. .++ +++.+.+++|++|++++.+... .+.+ . ....++.++ -+|-.-+... .. .|...++.
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~-d~pv~g~~~~----a~------~g~l~i~~ 138 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEML-DAPVSGGEPK----AI------DGTLSVMV 138 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEE-EcCCCCCHHH----Hh------hCcEEEEE
Confidence 4 455 3578889999999988777643 2222 0 112355554 2352211110 00 24434333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC
Q 007951 265 VHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~ 287 (583)
.. +.+..+.+..++..+|..
T Consensus 139 -gg--~~~~~~~~~~~l~~~~~~ 158 (296)
T PRK11559 139 -GG--DKAIFDKYYDLMKAMAGS 158 (296)
T ss_pred -CC--CHHHHHHHHHHHHHhcCC
Confidence 33 468899999999999964
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=118.54 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=101.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--C--ceecCCCcCCHhhhh---ccCCeEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G--~~~~d~t~~d~~Eav---~~ADIVILa 185 (583)
+|||||+|+||.+||+||.++ |++|++++|+.++..+...+. | +.. ..+..+++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999988888755543333321 2 332 45667766 468999999
Q ss_pred ccc-hHHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISD-AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd-~a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
+|+ ....++++++.++|++|++|++.+-.. ...... . .-.+++.+|.....+ |..- =+ .|. +
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~-~-l~~~gi~fvdapVsG-G~~g---A~-------~G~-~ 136 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK-E-LKAKGILFVGSGVSG-GEEG---AR-------KGP-S 136 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH-H-HHhcCCEEEcCCCCC-CHHH---Hh-------cCC-c
Confidence 998 556779999999999999999886532 111111 1 224578877544433 2220 01 343 4
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+-+.. +.++.+.++-+++.+|..
T Consensus 137 -im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 137 -IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 34455 578999999999999864
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=116.34 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=101.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhc---cCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~---~ADIVILa 185 (583)
.+|||||+|+||.++|++|.++ |++|.+++|+.++..+.... .|... ..+.+++|+++ ++|+|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEEE
Confidence 5899999999999999999999 99998888765543332221 25321 11568888886 58999999
Q ss_pred ccchH-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 186 ISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 186 vpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
+||.. ..++++++.|+|++|++|++.+... ....+. ...+++.++ -+|-.-|..- =+ .|-
T Consensus 74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 138 (470)
T PTZ00142 74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEEG---AR-------YGP- 138 (470)
T ss_pred eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHHH---Hh-------cCC-
Confidence 77664 5678999999999999998886532 111111 223577776 5562222220 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+ +-+.. +.++.+.++-+++.+|..
T Consensus 139 ~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 45555 578999999999999964
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=115.16 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=111.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcC-------------cee
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTE 164 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~ 164 (583)
..|++|||||+|.||..||.++..+ |++|++.+++.+. .+. ..+.| +..
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3468999999999999999999998 9999887766442 333 34455 232
Q ss_pred cCCCcCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCc
Q 007951 165 ENGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 165 ~d~t~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
..+.++ +.+||+||-++|.+... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.=-|.
T Consensus 78 ----~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa 149 (507)
T PRK08268 78 ----VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPV 149 (507)
T ss_pred ----eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCc
Confidence 346654 56999999999987764 3677888888899988 5788888766654 22223468888987777
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+ ...- +..+...+.+.++.+..++..+|..
T Consensus 150 ~v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 150 PLM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred ccC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 773 1222 4557778899999999999999974
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.9e-09 Score=109.02 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=118.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---------ceecC--CCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G---------~~~~d--~t~~d~~Eav~~AD 180 (583)
+||+|||.|+||.++|..|.++ | +++++.+. +...+...+.+ +...+ ....+..++++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999988 7 45555544 23333333322 11000 01346678899999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCc-EEEEecCchh-------hhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i-------~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+||+++|++.+.+++++|.+++++++ +|+...|+.. ..+++ .+|....+++..|+.+...
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev--------- 147 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV--------- 147 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH---------
Confidence 99999999999999999999998886 5678889864 24433 3343334567788766554
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH---HHHHHHHHHHHcCC
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENGM 329 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA---lieAl~d~~Ve~Gl 329 (583)
+.|.++.+.+... +.+..+.+.+++..-|. .-+...|+.+.+ ++|.+-- +.-.+.+ +...|-
T Consensus 148 ---~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g~ 212 (341)
T PRK12439 148 ---AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIGE 212 (341)
T ss_pred ---HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCCc
Confidence 3566654443332 34444444555544442 223334665544 5555544 2233333 335554
Q ss_pred CHHHH-HHHHHHHHHH
Q 007951 330 NEDLA-YKNTVECITG 344 (583)
Q Consensus 330 ~~e~A-~~~~~q~l~G 344 (583)
...-| ...+++|+..
T Consensus 213 n~~aali~~~~~E~~~ 228 (341)
T PRK12439 213 NTRAMVIARALREMTK 228 (341)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 44322 3355566544
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=105.46 Aligned_cols=155 Identities=20% Similarity=0.173 Sum_probs=104.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+|+|+|||.|+||.++|+.|.+. |++|+++.++.+++.+.+. ..+... +..++.++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 48999999999999999999999 9999999887766554443 333332 2568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecC-----chh-------------hhhhcccccCCCCccEEEeccCCCchhhHHhHhcc
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G-----~~i-------------~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G 251 (583)
.+.++++++...+. |+||+++.- +.. ..+++ .+|. -+||..-=+.+...+ .++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~-akVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPG-AKVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCC-cchhhhhcccCHHHh----ccC
Confidence 99999999998886 888876621 110 01111 2222 244433333333332 222
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 252 ~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
... +.....++| .. +.++++.+.+|.+.+|+.
T Consensus 143 ~~~-~~~~~v~va-gD--D~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-GD--DAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-cC--cHHHHHHHHHHHHhcCcc
Confidence 111 112333333 33 678999999999999985
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-08 Score=108.65 Aligned_cols=201 Identities=16% Similarity=0.122 Sum_probs=118.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-------------------HcC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-------------------~~G-~~~~d~t~~d 171 (583)
|+|+|||+|.||.++|.+|.+. |++|++.++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999998 9998766554332 22211 123 222 356
Q ss_pred HhhhhccCCeEEEeccchH----------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccc-c---CCCCcc-EE
Q 007951 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGL-D---FPKNIG-VI 233 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a----------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i-~---~p~dv~-VI 233 (583)
..++++++|+||+++|+.. ...+++.|.+++++|++|++.+++... .+....+ . .....+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 566778899999999998887754211 1110000 0 011222 25
Q ss_pred EeccCC--CchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCcccccchhhhhhhhhhhhhhhHh
Q 007951 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (583)
Q Consensus 234 ~v~Png--Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG-~~~vieTtf~eE~~sDlfgeqtvLs 310 (583)
..+|.. +|..+.+.+. .+.++. . .+.++.+.+..++..++ ...+..++.. .-+.-.+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSIE-TAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCHH-HHHHHHHHHHH-HH
Confidence 677733 2222111111 223233 3 37789999999999997 3322222222 11111111221 22
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 311 G~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.--+++.-+...+.+.|+++++.+..
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 222346666677778889988876543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.1e-09 Score=109.69 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=111.7
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC-----CCcCCHh
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIY 173 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~d-----~t~~d~~ 173 (583)
.++||+|||.|.||.++|..+..+ |++|++.++..+ ..+.+ .+.|..... ..+.+++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~ 78 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIE 78 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHH
Confidence 358999999999999999999998 999988776532 12211 123321100 1245788
Q ss_pred hhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhc
Q 007951 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~ 250 (583)
+++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++.+||=-|.+.++
T Consensus 79 ~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p----- 150 (321)
T PRK07066 79 ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP----- 150 (321)
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc-----
Confidence 9999999999999977653 58889999999999764 446776665544 223335799999988877631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 251 G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-- +.++...+++.++.+.+++..+|..
T Consensus 151 --------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 --------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 111 4568888999999999999999964
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.6e-08 Score=104.12 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=124.1
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-------ceEEEEecCCcc---cH-HHHHHc-------
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---SF-AEARAA------- 160 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-------~~ViVg~r~~s~---s~-~~A~~~------- 160 (583)
..|.++ ..+.+||+|||.|++|.|+|.-|.++ | ++|.++.|+..- .. +.-.+.
T Consensus 2 ~~~~~~---~~~~~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~yl 72 (365)
T PTZ00345 2 SLFQKL---RCGPLKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYL 72 (365)
T ss_pred cchhhc---ccCCCeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccC
Confidence 345533 44547999999999999999999987 6 677777665421 11 111111
Q ss_pred -CceecC--CCcCCHhhhhccCCeEEEeccchHHHHHHHHHHh--cCCCCc-EEEEecCchhh---------hhhccccc
Q 007951 161 -GFTEEN--GTLGDIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLG---------HLQSMGLD 225 (583)
Q Consensus 161 -G~~~~d--~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~--~Lk~Ga-iL~~a~G~~i~---------~ie~~~i~ 225 (583)
|+...+ ....|+.+++++||+|+++||++.+.++++++.+ ++++++ +|+.+.|+... .+++ .
T Consensus 73 p~~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~ 149 (365)
T PTZ00345 73 PGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---E 149 (365)
T ss_pred CCCcCCCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---H
Confidence 111100 0145778899999999999999999999999998 888776 46788888532 1111 1
Q ss_pred CCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhh
Q 007951 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (583)
Q Consensus 226 ~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfge 305 (583)
++..+- +..=|+.+..+ . .|.++.+++... + .+.++.+.+.+... .|.-.+-.|+.|-
T Consensus 150 l~~~~~-~LsGPs~A~Ev-----a-------~~~pt~~vias~-~---~~~a~~~~~lf~~~-----~frvy~s~Dv~Gv 207 (365)
T PTZ00345 150 LGIPCC-ALSGANVANDV-----A-------REEFSEATIGCE-D---KDDALIWQRLFDRP-----YFKINCVPDVIGV 207 (365)
T ss_pred hCCCeE-EEECCCHHHHH-----H-------cCCCcEEEEEeC-C---HHHHHHHHHHhCCC-----cEEEEEcCCcccc
Confidence 222222 23444443333 2 356654554432 2 34444555555554 2333444577777
Q ss_pred hhhHhhHHHHHH--HHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHH
Q 007951 306 RGILLGAVHGIV--ESLFRRFTENGMNEDLAYK-NTVECITGIISKII 350 (583)
Q Consensus 306 qtvLsG~~pAli--eAl~d~~Ve~Gl~~e~A~~-~~~q~l~Glia~li 350 (583)
+ +||.+--++ -++.=-+...|..-.-|+. .++.|+.. +++.+
T Consensus 208 E--l~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~-l~~a~ 252 (365)
T PTZ00345 208 E--VCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKL-FGKIF 252 (365)
T ss_pred h--hhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHh
Confidence 6 777776632 2222222345554444443 56666543 44444
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=106.76 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=123.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ --..|...|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99888777764 445666677542 44555555 57999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchh-hHHhHhccccccCCCceEEEee
Q 007951 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 191 ~~~Vl~eI~~~-Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~-vR~lf~~G~e~~G~Gv~aliAv 265 (583)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|++++-+||. -|+. + ..+ ++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpm-fGPksv----nh~----wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPM-FGPKSV----NHE----WQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCC-cCCCcC----CCc----cccCceEEEE
Confidence 99999887665 89999988765554 333444 78999999999993 3333 1 111 4788886654
Q ss_pred cCC----CCHHHHHHHHHHHHHhCCCcccccchhhhhhh
Q 007951 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 266 ~qd----~sgeale~a~ala~aIG~~~vieTtf~eE~~s 300 (583)
+.- ...+.-|....++...|| ..++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegc-kmVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGC-KMVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCC-eEEEEEeeccccc
Confidence 442 226788999999999998 5778888888544
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=104.12 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++ |||+|||+|+||.++|+.|.+. |++|.++.|... .++.++++++|+||+++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 34 8999999999999999999999 999988877532 2567888999999999999
Q ss_pred hHHHHHHHHHHhc-CCCCcEEEEec
Q 007951 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (583)
Q Consensus 189 ~a~~~Vl~eI~~~-Lk~GaiL~~a~ 212 (583)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999988774 78888776543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=121.21 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=123.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc-hH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd-~a 190 (583)
++|||||+|+||.+||.+|.+. |++|.++++..++ .+...+.|... ..++.+++++||+||+++|+ ++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8899999999999999999998 9998887776443 44555567654 56888999999999999995 44
Q ss_pred HHHHHH---HHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
..+++. .+.+.+++|++|++.+-+.... +......-+.++.++ =+|-..++.. . ..|-..+++
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~-----A-----~~G~L~imv 462 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR-----A-----AMGTLTIMA 462 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh-----h-----hcCCceEEE
Confidence 456762 4778899999998886654322 211000001466655 4563333331 0 234444333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCccc-ccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vi-eTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
.. +.+.++.++.+++.+|....+ --..-.=...++.. . .++++.-+ +.|+ +..+.++|++++..+...-.
T Consensus 463 -gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~n-N-~l~~~~~aa~aEa-l~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 463 -SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVN-Q-LLAGVHIASAAEA-MAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred -EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHH-H-HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHh
Confidence 33 467899999999999964211 10111111111111 1 12222222 3333 34557899999988775433
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=111.77 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHH---HHHH
Q 007951 450 TAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL---TQQA 526 (583)
Q Consensus 450 ~~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~---~~~~ 526 (583)
..|...+.+.+.+|.|.+.|++|..+++|.+.|..-+ ..|+.+.|+++|.++||+||+||++.|.+.|++.+ +++.
T Consensus 185 l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~-~~l~~e~g~~~l~~~Vsstaeyg~~~~~~~~~~~~~~~~~~~ 263 (314)
T TIGR00465 185 LCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLI-VDLIYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKI 263 (314)
T ss_pred HHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHhcHHHHHHHcCCHHHcCcchhHHHhhHHHHHHHHHH
Confidence 4788888999999999999999999999999988444 49999999999999999999999999999999988 8899
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCC
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRP 561 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (583)
|..|++|+. ..+.+.+..++||++..=+.-..++|
T Consensus 264 ~~~i~~g~fa~~~~~~~~~~~~~~~~~~~~~~~~~~e~vg~~lr~~~~ 311 (314)
T TIGR00465 264 LKEIQNGEFAKEWALENEAGKPAFNTARKYESEHEIEKVGKELRAMVP 311 (314)
T ss_pred HHHhCCChhhhhhhhhccCCcHHHHHHHHHHhCCcHHHHHHHHHHhcc
Confidence 999999943 34456667899999865444444433
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=97.88 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=95.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999998 98763 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++++++. .+|+|+.+++....+ ...+||..|| +.|+. .++. |-..+++++ ..+.+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HP-MfGp~------~a~~--~lf~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHP-LFGPM------SYND--GVHRTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCC-CCCCC------cCcc--cccceEEEE-CCCCC
Confidence 999999875 278899999854322 1357999999 44533 1110 101255444 55667
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhh
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sD 301 (583)
+++++.++++++ |+ +++++|.++||+.-
T Consensus 101 ~~~~~~~~~l~~--G~-~~~~~t~eeHD~~~ 128 (197)
T PRK06444 101 DNYLNEINEMFR--GY-HFVEMTADEHDLLM 128 (197)
T ss_pred HHHHHHHHHHHc--CC-EEEEeCHHHHHHHH
Confidence 788899999998 74 78999999997653
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=102.02 Aligned_cols=201 Identities=16% Similarity=0.108 Sum_probs=117.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh---------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea--------------- 175 (583)
++||+|||+|.||.++|.+|.+. |++|++.+++ +...+. ...|..+. .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999998 9998766554 333333 33343210 00112222
Q ss_pred hccCCeEEEeccc----------hHHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhccccc--CC------CCc
Q 007951 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSMGLD--FP------KNI 230 (583)
Q Consensus 176 v~~ADIVILavpd----------~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~----ie~~~i~--~p------~dv 230 (583)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+... . +.+.... .| .++
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3479999999997 46677888899999999998876554321 1 1111111 11 122
Q ss_pred cEEEecc--CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhh
Q 007951 231 GVIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308 (583)
Q Consensus 231 ~VI~v~P--ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtv 308 (583)
.+...| -.||..+.+... .+-++. . .+.+..+.++.++..++...++.++. .+-+.-.+-+.+
T Consensus 153 -~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~- 217 (415)
T PRK11064 153 -NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS- 217 (415)
T ss_pred -EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-
Confidence 244667 455655432211 233332 2 36788999999999998642332322 222222222222
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 309 LsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+...--+++.-+...+.+.|+++++..+
T Consensus 218 ~~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 218 FRDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2233333666667777788888876554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-08 Score=107.76 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=109.7
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCc
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~ 169 (583)
.+++|+|||.|.||..||.++.++ |++|++.+++.+. .+. ..+.|..... ..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 76 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV 76 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe
Confidence 458999999999999999999998 9999888776443 222 2334421000 014
Q ss_pred CCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.++++ +.+||+||.++|..... .++.++...++++++|. .++++.+..+.. ......+++..|.=-|.+.+
T Consensus 77 ~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~-- 150 (503)
T TIGR02279 77 TDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM-- 150 (503)
T ss_pred CCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC--
Confidence 46654 57999999999976553 47778888888988764 667777665443 23334578999997778773
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
...- +..+...+++.++.+..+++.+|..
T Consensus 151 -----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 -----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4557788999999999999999975
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.5e-08 Score=98.08 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=97.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cC------CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-EN------GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d------~t~~d~~Eav~~ADIVIL 184 (583)
|+|+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+.. .+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 888887776433 344455556632 00 112344444 89999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcE-EEEecCch-hhhhhcccccCCCCccEE------EeccCCCchhhHHhHhccccccC
Q 007951 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-i~~ie~~~i~~p~dv~VI------~v~PngPg~~vR~lf~~G~e~~G 256 (583)
++|+....++++.+.+++.++++ |+...|+. ...+.. .+++. .++ .+...+|+... ..|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~---------~~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVR---------HTG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEE---------EcC
Confidence 99999999999999999988764 56778875 333333 23322 222 22333455442 113
Q ss_pred CCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 257 ~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.|... +...++.. +..+.+.+++...|..
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~ 168 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLD 168 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCC
Confidence 45444 44333322 3456666777777764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-08 Score=101.23 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=109.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t~~ 170 (583)
+++|||||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47899999999999999999988 9998887766432 222 3344432100 0134
Q ss_pred CHhhhhccCCeEEEeccchHHH--HHHHHHHhcC-CCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~L-k~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
+. +.+++||+||-++|.+... +++.++.... +++++|. -++++.+..+.. .....-+++.+|+=.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 55 5689999999999988774 4777888877 8899875 556666665544 22223468999998887773
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCC
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSP 287 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~-aIG~~ 287 (583)
+..- +.++...+.+.++.+..++. .+|..
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 2333 56688899999999999988 59964
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-09 Score=108.40 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHH----HHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL----TQQA 526 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~----~~~~ 526 (583)
.|-+.+++.|++|+|.+.|++|.-++.|.+.| +..+.+||.+.|+..|+++||+||++|.+.|.||--... +++.
T Consensus 201 cGgl~~li~agfetLvEaGy~PE~AyfE~lhE-~klIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~~~k~~mk~~ 279 (338)
T COG0059 201 CGGLQALIKAGFETLVEAGYQPELAYFECLHE-LKLIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDAETKEEMKKV 279 (338)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecHHhHHHHHHH
Confidence 45555678899999999999999999999984 678889999999999999999999999999999766555 6777
Q ss_pred HhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCCcc
Q 007951 527 LVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTV 563 (583)
Q Consensus 527 ~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (583)
+..+.+|+- ....+.+.-++||++.+=+.-.++.|-+
T Consensus 280 l~dIq~G~Fak~~~~e~~~g~p~l~~~r~~~~~~~iEkvg~~lrk~m~~~ 329 (338)
T COG0059 280 LKDIQSGEFAKEWILENQAGRPKLEALREETAEHEIEKVGKELRKMMPWE 329 (338)
T ss_pred HHHHhcChhHHHHHHhhhcCCHHHHHHHHHhhcChHHHHHHHHHHhcchh
Confidence 778888743 4455666777888888777666666654
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=96.58 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=69.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec---C-------CCcCCHhhhhccCCeE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDLV 182 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~---d-------~t~~d~~Eav~~ADIV 182 (583)
||+|||.|++|.++|.-|.++ |++|.++.++.+ ..+.-.+.+.... + ....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999888777643 3333333222100 0 0146788999999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEE-EecCc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~ 214 (583)
++++|.+.+.+++++|.++++++++|+ ...||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998755 55677
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=96.55 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--Cce------ecC--CCcCCHhhhh-ccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~------~~d--~t~~d~~Eav-~~AD 180 (583)
|||+|||.|+||.++|..|.++ |++|.+..|..+ ..+.-.+. +.. ... ....+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999998 998877766432 22222221 111 000 0124555666 5899
Q ss_pred eEEEeccchHHHHHHHHHHh-cCCCCc-EEEEecCch
Q 007951 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~-~Lk~Ga-iL~~a~G~~ 215 (583)
+||++||+....++++++.+ ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 567888883
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-08 Score=116.76 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=124.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|||||+|+||.+||.||.+. |++|.++++..+ ..+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTP-LMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999998 999988877644 345556678765 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhcccccCCCC--ccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 192 ~-~Vl---~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~d--v~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
. +|+ +.+.+.+++|+++++.+-+... .+.. . .-..+ +.+| =+|-.-+.. .-+ .|--.+
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~-~-l~~~g~~~~~l-DaPVsGg~~---~A~-------~G~L~i 140 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK-K-LTERKEQIFLV-DAYVSKGMS---DLL-------NGKLMI 140 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH-H-HHhcCCceEEE-EccCcCCHH---HHh-------cCCeEE
Confidence 4 576 3588889999999988765422 2211 0 11234 5555 455222221 111 243332
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccc-cchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPFTFA-TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~vie-Ttf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q 340 (583)
++ .. +.+..+.++.++..+|...... -..-.=....+..- .++.+.+.++.|++ -.+.+.|++++..+.....
T Consensus 141 mv-GG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN-~l~~~~~~a~aEAl-~la~~~Gld~~~l~~vl~~ 214 (1378)
T PLN02858 141 IA-SG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNE-LLEGIHLVASAEAM-ALGVRAGIHPWIIYDIISN 214 (1378)
T ss_pred EE-cC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHH-HHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHhc
Confidence 33 33 5678899999999999641100 00011111111111 11122222334443 2467899999988875433
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-08 Score=100.14 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=104.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|||||+|+||.+|+.||.++ |+.|+|++|.-++ .+..++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7899999999999999999999 9999999887554 56667778876 67899999999999999998777
Q ss_pred H-HHHHH---HHhcCCCCcEE-EEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 192 A-DNYEK---IFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 192 ~-~Vl~e---I~~~Lk~GaiL-~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
+ +++.. +...+++|... ++++-+... .+.+ .+. ..+..+| =+| -.|-. ... -.|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP-VSGg~-----~~A----~~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP-VSGGV-----KGA----EEGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc-ccCCc-----hhh----hcCeEEEE
Confidence 5 56652 66777788876 677655421 2222 111 2344454 345 11111 011 13555545
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 007951 264 AVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~ 287 (583)
+ . -+....+.+..+++.+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 5 3 3567788899999999964
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-07 Score=93.48 Aligned_cols=225 Identities=14% Similarity=0.202 Sum_probs=154.9
Q ss_pred CEEEEEccchh--------------------HHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHcCceecCC
Q 007951 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~m--------------------G~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~G~~~~d~ 167 (583)
+||+|.|.||| |..||...... |++|+....+ +...|++-+..|+..
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v--- 72 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV--- 72 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE---
Confidence 78899999987 44566666555 8898887653 345699999999986
Q ss_pred CcCCHhhhhccCCeEEEeccch-HHHHHHHHHHhcCCCCcEEEEe---cCchhhhhhcccccC-CCCccEEEeccC-CCc
Q 007951 168 TLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLS---HGFLLGHLQSMGLDF-PKNIGVIAVCPK-GMG 241 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~-a~~~Vl~eI~~~Lk~GaiL~~a---~G~~i~~ie~~~i~~-p~dv~VI~v~Pn-gPg 241 (583)
+.|..++++.+.+.+|-||=. ....+.++|.+++..|++|.-. +.+-+.+.-+..+.. ++|+-|-..||- -||
T Consensus 73 -v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPG 151 (340)
T COG4007 73 -VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPG 151 (340)
T ss_pred -ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCC
Confidence 677889999999999999977 6678999999999999998633 333333221223333 478889999994 477
Q ss_pred hhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHH--HHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG--IVE 318 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pA--lie 318 (583)
+...+.|.-+ |++-.. -.-++.+..+++..++++.|.. +++. .|+....+- +|++.. .+.
T Consensus 152 tp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~VaD-mg~lvtav~l~ 214 (340)
T COG4007 152 TPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVAD-MGVLVTAVALS 214 (340)
T ss_pred CCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhhh-hHHHHHHHHHH
Confidence 7755555543 222111 1235789999999999999964 2222 233333332 233332 333
Q ss_pred HHHH---HHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 319 SLFR---RFT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 319 Al~d---~~V-e~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
+..| .+. -.|-|.|+--+....++ +.++.++-.+|+..|...+..
T Consensus 215 gvldyy~Vg~qIi~AP~eMIekQilmtL-qTmAsLvetsGi~g~~~~~n~ 263 (340)
T COG4007 215 GVLDYYYVGTQIIGAPKEMIEKQILMTL-QTMASLVETSGIDGMLKALNP 263 (340)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHHHHhcchhHHHHhcCH
Confidence 3333 333 46999999888777776 358999999999999887764
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=93.24 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=73.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~---------t~~d~~Eav~~ADIV 182 (583)
|||+|||.|.||..+|..|.++ |++|.+..| . +..+...+.|+..... ...+..++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888877776 3 3344455566542110 123455666899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCch
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~ 215 (583)
|+++|..+..++++++.++++++++| +..-|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 99999999999999999999888765 4667875
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=89.25 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCcee---------cCCCcCCH
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTE---------ENGTLGDI 172 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~---------~d~t~~d~ 172 (583)
||+|||.|.||.++|.-+..+ |++|++.+.+.+ ..+. ..+.|-.. .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999998 999988776533 1211 11112100 00014677
Q ss_pred hhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHh
Q 007951 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~ 249 (583)
++++ +||+||=++|...-. +++.++.+.+.++++| +-++++.+..+.. ..+..-+++..|+=.|.+.++
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 7777 999999999976653 5999999999999987 4778888887765 333445799999977776521
Q ss_pred ccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 250 ~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-= +.++...+.+.++.+..++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 112 5568889999999999999999863
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=104.04 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..|.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+. ..+.+|++++||+|+++
T Consensus 146 ~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~-----~~~l~ell~~aDiV~l~ 211 (333)
T PRK13243 146 YDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE-----YRPLEELLRESDFVSLH 211 (333)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-----ecCHHHHHhhCCEEEEe
Confidence 46899 9999999999999999999987 8888766654322 233445554 35789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|. |.+. ++.-
T Consensus 212 lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~-gAaLDV~~~EP~-~~~p---L~~~------ 280 (333)
T PRK13243 212 VPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA-GAGLDVFEEEPY-YNEE---LFSL------ 280 (333)
T ss_pred CCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE-EEEeccCCCCCC-CCch---hhcC------
Confidence 997654 45664 688999999998754 4421 2233332221 234677777774 2222 2321
Q ss_pred CCceEEEeecCC
Q 007951 257 AGINSSFAVHQD 268 (583)
Q Consensus 257 ~Gv~aliAv~qd 268 (583)
-|.+++||-.
T Consensus 281 --~nvilTPHia 290 (333)
T PRK13243 281 --KNVVLAPHIG 290 (333)
T ss_pred --CCEEECCcCC
Confidence 3677888874
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=96.43 Aligned_cols=96 Identities=26% Similarity=0.289 Sum_probs=72.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC------------CcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------TLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~------------t~~d~~Eav~~A 179 (583)
++|+|||.|.||.++|..|.++ |++|.+..|. +..+...+.|+...+. ...+..+.++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA 74 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence 7899999999999999999998 9988877764 2234445556532110 011223567899
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE-EecCch
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (583)
|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 75 D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 999999999999999999999999998765 556765
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-07 Score=95.58 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=124.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--------G~~~~d--~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+-|.|+|+-|.++ |++|.++.|+.+- .+.-.+. |+...+ ....|+.+++++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 7899999999999999999999 9988887765321 1111110 221100 115678999999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcE-EEEecCch-------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhcccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e 253 (583)
|++++|-+.+.++++++.++++++++ |+.+.|+. ...+++ .+|.+.-++..=||-...+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV---------- 141 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV---------- 141 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH----------
Confidence 99999999999999999999988886 45777874 223333 3444434444445433222
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHH--HHHHHHHHHHcCCCH
Q 007951 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI--VESLFRRFTENGMNE 331 (583)
Q Consensus 254 ~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAl--ieAl~d~~Ve~Gl~~ 331 (583)
.+|.|+-+++... +.+..+.+..+|. ++ +|.--+-.|..|-+ ++|.+--. |-+++--+...|-.-
T Consensus 142 --a~g~pta~~vas~-d~~~a~~v~~~f~---~~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~Na 208 (329)
T COG0240 142 --AQGLPTAVVVASN-DQEAAEKVQALFS---SP-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDNA 208 (329)
T ss_pred --hcCCCcEEEEecC-CHHHHHHHHHHhC---CC-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChhH
Confidence 2578886766553 3333333344443 33 22233344777666 67776652 444455555666665
Q ss_pred HHHHH-HHHHHHHH
Q 007951 332 DLAYK-NTVECITG 344 (583)
Q Consensus 332 e~A~~-~~~q~l~G 344 (583)
.-|.. .++.||..
T Consensus 209 kaalitrGL~Em~r 222 (329)
T COG0240 209 KAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHhHHHHHHH
Confidence 55544 45566544
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-06 Score=97.02 Aligned_cols=347 Identities=12% Similarity=0.118 Sum_probs=190.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-----------HHHHcCceecC---------CC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~-----------~A~~~G~~~~d---------~t 168 (583)
+.|++|+|||.|.||..+|.-+..+ |++|++.+...+ ..+ +..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4668999999999999999999988 999887766532 222 22223321100 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|.+... +++.++.++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976654 69999999999999874 778888777765 333345799999988887741
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~ 324 (583)
.-= |.++...+++.++.+.+++..+|..-++- .+ .. +-+.+=+.. ++. -+-.+
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~v----~d--~p-----Gfv~nRi~~~~~~-ea~~l 513 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIVV----ND--CP-----GFFVNRVLFPYFA-GFSQL 513 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEEe----cC--cC-----chhHHHHHHHHHH-HHHHH
Confidence 112 45688889999999999999999652211 11 11 112222222 222 23356
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHH
Q 007951 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSV 401 (583)
Q Consensus 325 Ve~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~ 401 (583)
++.|.++++-=...-+.+ +| --.++-..|++.+++.... ....+++.+ +.+.-+.+++. |..|.+.++
T Consensus 514 v~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~~~~~~-~~~~~~~~~---~~~~~~~l~~~---v~~G~~G~k- 584 (715)
T PRK11730 514 LRDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAHHAQAV-MAEGFPDRM---KKDYRDAIDVL---FEAKRFGQK- 584 (715)
T ss_pred HHcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHHHHHHH-HHHhcCCcc---ccchhHHHHHH---HHCCCCccc-
Confidence 788888876444322211 34 3355666677555543221 111233211 11112244444 455766665
Q ss_pred HHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHhC--CChhhhhh
Q 007951 402 VLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHP--FTAGVYAALMMAQIEILRKKG--HSYSEIIN 477 (583)
Q Consensus 402 ~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~--~~~g~~~~~~~a~~~~l~~~g--h~~se~~n 477 (583)
.++.+|.-.. +. ..+.+..+-..+.+.++..... . ..+.+ +.+=++.+++---+.+ -++| -+|++ ++
T Consensus 585 --~g~GfY~y~~-~~--~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~nRll~~~~~Ea~~l-l~eGvva~~~d-ID 655 (715)
T PRK11730 585 --NGKGFYRYEE-DK--KGKPKKEVDPAVYELLAPVVQP-K-REFSDEEIIARMMIPMINEVVRC-LEEGIVASPAE-AD 655 (715)
T ss_pred --cCCEeEeccc-CC--CcccccCCCHHHHHHHHHhccc-c-CCCCHHHHHHHHHHHHHHHHHHH-HhcCCcCCHHH-HH
Confidence 2333432110 00 0011000001222333222110 0 01221 2344444444433444 5566 56644 45
Q ss_pred hhHHHHhh------hcchhhhhccchhhhhhcchhhhcc
Q 007951 478 ESVIESVD------SLNPFMHARGVSFMVDNCSTTARLG 510 (583)
Q Consensus 478 e~~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~~g 510 (583)
..+...+- =.+-|+..-|++-+++.+..-+++|
T Consensus 656 ~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~~~~ 694 (715)
T PRK11730 656 MALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYAHLG 694 (715)
T ss_pred HHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHcC
Confidence 55544443 1223566678888888887655555
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-08 Score=96.57 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred ecccc--ccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 95 RGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 95 ~~~r~--~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
+.|+| .-......+.| ++|||||+|.+|..+|+.|+.- |.+|++.++.... ...+...++. ..+.
T Consensus 19 ~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~~l 85 (178)
T PF02826_consen 19 RNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YVSL 85 (178)
T ss_dssp HTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ESSH
T ss_pred HcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----eeeh
Confidence 44566 22333578899 9999999999999999999977 9998777765432 2335566775 5689
Q ss_pred hhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
+|++++||+|++++|-... ..++. +....||+|++++ .+-|
T Consensus 86 ~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 86 DELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 9999999999999995443 34554 5788899999877 4444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=108.42 Aligned_cols=135 Identities=13% Similarity=-0.040 Sum_probs=99.9
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCC-ccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~d-v~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
||||+|+..+.++++++.++++++++|+|+.+++...++...-.++.+ .+||..|| +.|.+. ..|........+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~-~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRES-SGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcc-hhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999844332211133433 57999999 556553 334444444447899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~ 324 (583)
+++||.++.+.++++.+++++..+|+ +++.++.++||+.-.+ +|+.=+-+.-++...+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHH
Confidence 99999999999999999999999995 6899999999776533 3443333444444444
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-08 Score=101.67 Aligned_cols=149 Identities=22% Similarity=0.244 Sum_probs=102.9
Q ss_pred eccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
|+|.|..... ...|.| ||+||||+|.+|..+|..++.- |.+|+++++..++ +.+...+... ..+.+
T Consensus 126 ~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~Ld 192 (324)
T COG0111 126 RRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSLD 192 (324)
T ss_pred HcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccHH
Confidence 7778876222 347889 9999999999999999999987 9998776664433 2344455553 56899
Q ss_pred hhhccCCeEEEeccch-HHHHHHH-HHHhcCCCCcEEEEe-cCc------hhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLS-HGF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~-a~~~Vl~-eI~~~Lk~GaiL~~a-~G~------~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
+++++||+|++.+|-. ....++. +....||+|++++-+ =|- .+..+++..+. ...+||.-..|..+.+.
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~-gA~lDVf~~EPl~~~~p- 270 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA-GAALDVFEEEPLPADSP- 270 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc-eEEecCCCCCCCCCCCh-
Confidence 9999999999999944 4455775 577889999987744 332 13344443332 34677887777666544
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
+|.- -+.+++||--
T Consensus 271 --L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 --LWDL--------PNVILTPHIG 284 (324)
T ss_pred --hhcC--------CCeEECCccc
Confidence 3332 3556688873
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-06 Score=96.91 Aligned_cols=349 Identities=11% Similarity=0.107 Sum_probs=191.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------CC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~t 168 (583)
..|++|+|||.|.||..+|..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999988 999887765532 2222 1222211000 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|.+.-. +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+=.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 4679999999999976653 69999999999999874 678888777755 233335799999988887731
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~V 325 (583)
.-= |.++...+++.++.+.+++..+|..-++- .+ .. +-+.+=+..-+-.-+-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d--~p-----Gfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIVV----ND--CP-----GFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEEe----CC--cc-----cchHHHHHHHHHHHHHHHH
Confidence 111 45677889999999999999999642211 11 11 1122222221222234467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhHHH
Q 007951 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVV 402 (583)
Q Consensus 326 e~Gl~~e~A~~~~~q~---l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~~~ 402 (583)
+.|.++++-=...-+. =+| --.++-..|++.+++.... -...+++.+...+ -..+++. |..|.+.|+.
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~G-Pf~l~D~~Gld~~~~i~~~-~~~~~~~~~~~~~---~~~l~~~---v~~G~lG~K~- 585 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMG-PAYLLDVVGIDTGHHAQAV-MAEGFPDRMGKDG---RDAIDAL---FEAKRLGQKN- 585 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccC-HHHHHHhhhHHHHHHHHHH-HHHhcCcccccch---hHHHHHH---HHCCCCcccC-
Confidence 8898887643322111 124 2356666677655543221 1122333211111 2244444 3457776652
Q ss_pred HhcccccccC-CCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhC--CChhhhhhhh
Q 007951 403 LAGRRFYEKE-GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKG--HSYSEIINES 479 (583)
Q Consensus 403 ~e~~~~~~~~-g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~~~~g~~~~~~~a~~~~l~~~g--h~~se~~ne~ 479 (583)
++.+|.-. +... ..++..+..+.+.=+..|. +..++ +..-+.+=++.++..--..+| ++| .++++ ++.-
T Consensus 586 --g~GfY~y~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~Rll~~~~nEa~~ll-~eGiva~~~d-ID~~ 657 (714)
T TIGR02437 586 --GKGFYAYEADKKG-KPKKLVDSSVLELLKPVVY--EQRDF-DDEEIIARMMIPMINETVRCL-EEGIVATAAE-ADMG 657 (714)
T ss_pred --CCEEEecccCcCc-cccCCCCHHHHHHHHHhhc--ccCCC-CHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHH-HHHH
Confidence 33333111 0000 0000111222222122222 11111 111234555555555555565 555 66654 3444
Q ss_pred HHHHhh------hcchhhhhccchhhhhhcchhhhcc
Q 007951 480 VIESVD------SLNPFMHARGVSFMVDNCSTTARLG 510 (583)
Q Consensus 480 ~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~~g 510 (583)
..-..- =.+.|+...|++-+++.|..=+++|
T Consensus 658 ~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~~~g 694 (714)
T TIGR02437 658 LVYGLGFPPFRGGAFRYLDSIGVANFVALADQYAELG 694 (714)
T ss_pred HHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 443332 2334666688888888887545555
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.6e-07 Score=95.20 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=72.7
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCC--------ceEEEEecCC---cccHHHHHHc---------CceecC--CCcC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARAA---------GFTEEN--GTLG 170 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G--------~~ViVg~r~~---s~s~~~A~~~---------G~~~~d--~t~~ 170 (583)
||+|||.|+.|.++|.-|.++ | ++|.++.+.. .+........ |+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 689999999999999999988 7 7888876632 1111111111 221100 0135
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+..
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 7889999999999999999999999999999998874 678888854
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.1e-08 Score=103.58 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=103.1
Q ss_pred eecccccccc---chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~f~~---~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
++.|+|.-.. ....+.| |+|||||+|+||..+|+.|+.. |.+|++.++... ..+.....|+.. ..
T Consensus 173 ~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~~ 240 (385)
T PRK07574 173 AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----HV 240 (385)
T ss_pred HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----cC
Confidence 3456675321 2356899 9999999999999999999977 988877766532 233334456553 45
Q ss_pred CHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.+|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|--+.
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~-GAaLDV~~~EPlp~d 319 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA-GYAGDVWFPQPAPAD 319 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc-EEEEecCCCCCCCCC
Confidence 899999999999999996655 45675 688899999988744 4421 2233332222 234677766664333
Q ss_pred hhhHHhHhccccccCCCceEEEeecC-CCCHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale 275 (583)
+.. +.- -|.+++||- ..+.++.+
T Consensus 320 ~pL---~~~--------pNvilTPHiag~T~e~~~ 343 (385)
T PRK07574 320 HPW---RTM--------PRNGMTPHISGTTLSAQA 343 (385)
T ss_pred ChH---HhC--------CCeEECCccccCcHHHHH
Confidence 332 221 366788876 34445444
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.9e-08 Score=101.15 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=79.8
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|+||.++|+.|+.. |.+|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 457899 9999999999999999999987 9988776654322111 1111 3578999999999999
Q ss_pred eccchHH-HHHH-HHHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEecc
Q 007951 185 LISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 185 avpd~a~-~~Vl-~eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~P 237 (583)
++|.... ..++ +++.+.||+|++|+ .+-|-. +..+++..+. ....||..-.|
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~-gaalDV~~~EP 265 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL-GAAIDTYENEA 265 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee-EEEEeccCCCC
Confidence 9997764 3444 46889999999876 455542 2233332221 23456666566
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-08 Score=103.27 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=102.7
Q ss_pred eeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
++.|+|.-. .....|.| ++|||||+|.||..+|+.|+.. |.+|+++++.. ...+...+.|+.. ..
T Consensus 180 ~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~~ 247 (386)
T PLN03139 180 VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----EE 247 (386)
T ss_pred HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----cC
Confidence 355677532 12356899 9999999999999999999977 98887665542 2233444556653 45
Q ss_pred CHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.+|++++||+|++++|.... ..++. ++...||+|++|+.+ -|-. +..+++..+. ....||..-.|..+.
T Consensus 248 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~-GAaLDV~~~EPlp~d 326 (386)
T PLN03139 248 DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG-GYGGDVWYPQPAPKD 326 (386)
T ss_pred CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce-EEEEcCCCCCCCCCC
Confidence 899999999999999996555 45665 688999999988755 3321 2233332222 235677766674444
Q ss_pred hhhHHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
+.. +.- -|.+++||-. .+.++.+
T Consensus 327 ~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 327 HPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred Chh---hcC--------CCeEEcccccccCHHHHH
Confidence 332 111 3667888763 3444443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=99.66 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=95.6
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
+.|+|.... ...|.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ .|+.. ...+.++
T Consensus 108 ~~g~w~~~~-~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l~e 169 (303)
T PRK06436 108 KNGNFKQSP-TKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEPED 169 (303)
T ss_pred HcCCCCCCC-CCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCHHH
Confidence 456675432 357899 9999999999999999988766 8888776654211 23321 1357899
Q ss_pred hhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 175 TISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 175 av~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
++++||+|++++|..... .++. +....||+|++++.+ -|-. +..+++..+. ....||..-.|..+.+.
T Consensus 170 ll~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~-~a~lDV~~~EP~~~~~~-- 246 (303)
T PRK06436 170 IMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK-YYLSDVWWNEPIITETN-- 246 (303)
T ss_pred HHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce-EEEEccCCCCCCCccCC--
Confidence 999999999999976654 4555 578889999988744 3321 2223221111 12346666566322211
Q ss_pred HhHhccccccCCCceEEEeecC--CCCHHHHHH
Q 007951 246 RLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~q--d~sgeale~ 276 (583)
=-+.+++||- ..+.+..+.
T Consensus 247 ------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 247 ------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred ------------CCCEEECCccccccCHHHHHH
Confidence 1467899993 356654443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-06 Score=96.10 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC---------CC
Q 007951 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~d---------~t 168 (583)
.+++|+|||.|.||..+|.-+. .+ |++|++.+.+.+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 57 999887665532 22221 122211000 00
Q ss_pred cCCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
..+. +.+++||+||=++|..... +++.++-++++++++|. -++++.+..+.+ .....-+|+..|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 5789999999999977653 69999999999999874 678888877765 223334799999988887631
Q ss_pred HhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-= |.++...+++.++.+.+++..+|..
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~ 479 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKT 479 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 111 4557788999999999999999965
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=98.03 Aligned_cols=162 Identities=23% Similarity=0.255 Sum_probs=106.4
Q ss_pred ceeeeccccccc-----cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec
Q 007951 91 EYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (583)
Q Consensus 91 e~v~~~~r~~f~-----~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (583)
++-+|.|.|... .....++| ||+||||+|.+|.++|+.++.- |.+|.++.+... .+...+.++.
T Consensus 122 ~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~-- 190 (324)
T COG1052 122 DRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR-- 190 (324)
T ss_pred HHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce--
Confidence 334555666554 44578999 9999999999999999999854 888877766532 2333344455
Q ss_pred CCCcCCHhhhhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEec
Q 007951 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVC 236 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~ 236 (583)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+ .+=|-. +.-+++..+. ....||.--.
T Consensus 191 ---y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~-gaglDV~e~E 266 (324)
T COG1052 191 ---YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA-GAGLDVFENE 266 (324)
T ss_pred ---eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc-eEEeeecCCC
Confidence 345999999999999999976664 4665 6788899999887 443421 3344443332 4577888777
Q ss_pred cCCCchhhHHhHhccccccCCCceEEEeecC-CCCHHHHH
Q 007951 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (583)
Q Consensus 237 PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale 275 (583)
|.-..+..+++-. . -+.+++||. ..|.+++.
T Consensus 267 p~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~ 298 (324)
T COG1052 267 PALFDHPLLRLDN-------F-PNVVLTPHIASATEEARK 298 (324)
T ss_pred CCCCChhHhhccC-------C-CCEEEccccccccHHHHH
Confidence 7643333211111 1 346788888 34444443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.8e-08 Score=101.50 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=69.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...|.| ++|||||+|+||.++|+.|... +|.+|++.++...+. ...++.. ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~-----~g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIvl 206 (332)
T PRK08605 141 SRSIKD-LKVAVIGTGRIGLAVAKIFAKG-----YGSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVTL 206 (332)
T ss_pred cceeCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEEE
Confidence 356899 9999999999999999999422 277876554432221 1222331 3578999999999999
Q ss_pred eccchHHHHHH--HHHHhcCCCCcEEEEe-cCc
Q 007951 185 LISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (583)
Q Consensus 185 avpd~a~~~Vl--~eI~~~Lk~GaiL~~a-~G~ 214 (583)
++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 207 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred eCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99987776544 3578899999987744 443
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=97.62 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=95.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..|.| |+|||||+|++|..+|+.++.- |.+|+++++.... ...++. ..+.+|++++||+|+++
T Consensus 141 ~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~-----~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 141 GEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE-----RVSLEELLKTSDIISIH 203 (311)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce-----eecHHHHhhcCCEEEEe
Confidence 46899 9999999999999999999865 8888766553211 123444 45899999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||||++|+ .+-|-. +..+++..+. ...||..-.|-.+.+.. +.--
T Consensus 204 ~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP~~~~~pL---~~~~----- 273 (311)
T PRK08410 204 APLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEPMEKNHPL---LSIK----- 273 (311)
T ss_pred CCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCCCCCCChh---hccC-----
Confidence 995443 45665 6788999999877 555532 3444443332 45677777774433332 2110
Q ss_pred CCceEEEeecCC-CCHHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~a 277 (583)
.=-|.+++||-. .+.++.+.+
T Consensus 274 ~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 274 NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCEEECCccccCCHHHHHHH
Confidence 002678899863 455554443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=94.21 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=111.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec------------CCCcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~------------d~t~~d~~Eav~~A 179 (583)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..+- .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999764 6777655544 43344333 443200 00133445678999
Q ss_pred CeEEEeccch----------HHHHHHHHHHhcCCCCcEEEEecCch----hh----hhhc-ccccCCCCccEEEe---cc
Q 007951 180 DLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFL----LG----HLQS-MGLDFPKNIGVIAV---CP 237 (583)
Q Consensus 180 DIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~----~ie~-~~i~~p~dv~VI~v---~P 237 (583)
|+||+|+|.. ......+.|.+++++|++|++.+-+. -. .+++ .++.. .-++..+ .|
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~--~~~~~~~~~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTF--NQDFYVGYSPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCc--CCCeeEeeCCCc
Confidence 9999999954 22223446899999999887654432 11 1211 11221 1123333 33
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhhhhhhhhhhhHhhHHHHH
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRSDIFGERGILLGAVHGI 316 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~-vieTtf~eE~~sDlfgeqtvLsG~~pAl 316 (583)
-.+|..+.+.. -.+- +.... +.+..+.+..+...+.... +..|+. .+-+.-.+-+.+ +...--++
T Consensus 156 v~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~ 221 (425)
T PRK15182 156 INPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIAL 221 (425)
T ss_pred CCCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHH
Confidence 44444421111 1233 33343 4667788888998886322 222222 222222222222 23333347
Q ss_pred HHHHHHHHHHcCCCHHHHHHH
Q 007951 317 VESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 317 ieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.-++..+.+.|++..+.+.-
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHH
Confidence 777788888899999876654
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-06 Score=87.46 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=140.1
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCccEE
Q 007951 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (583)
Q Consensus 159 ~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-ie~~~i~~p~dv~VI 233 (583)
..|+.. +.|..|+++++|++|+-+|-.. +.+++++|.+++++|++|..+.-++ +.+ ++. +. ++|+.|.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCee
Confidence 568876 6788899999999999999766 7899999999999999998776654 212 222 22 5899999
Q ss_pred EeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhH
Q 007951 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (583)
Q Consensus 234 ~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~ 312 (583)
..||-+ .+.. .|--+ + ...-+++++++....|++.+|.. +++. .++.+..+-+|-.
T Consensus 197 S~HPaa-VPgt------------~~q~Y-i-~egyAtEEqI~klveL~~sa~k~ay~~P--------A~LvspV~DMgS~ 253 (340)
T TIGR01723 197 SYHPGC-VPEM------------KGQVY-I-AEGYASEEAVNKLYELGKKARGKAFKMP--------ANLLGPVCDMCSA 253 (340)
T ss_pred ccCCCC-CCCC------------CCceE-e-ecccCCHHHHHHHHHHHHHhCCCeeecc--------hhhccchhhHHHH
Confidence 999932 2221 12222 2 36678999999999999999975 2222 2455555555555
Q ss_pred HHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHH
Q 007951 313 VHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (583)
Q Consensus 313 ~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e 387 (583)
+.+ .+..-++..++ .|-|.+.+-..+.++++. ++.|+.++|+..|.+.+... +--|.+-|--..|.-+++..
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLnPe--aL~~tAdSM~~~~~q~~L~~ 330 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALDPA--ALLGTADSMNFGPLADILPT 330 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCHH--HHhhhhhhcccchHHHHHHH
Confidence 555 34555666665 599999999999999875 99999999999999998762 22333222223444445554
Q ss_pred HHH
Q 007951 388 CYE 390 (583)
Q Consensus 388 ~~~ 390 (583)
.++
T Consensus 331 aL~ 333 (340)
T TIGR01723 331 ALE 333 (340)
T ss_pred HHH
Confidence 444
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-06 Score=87.48 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=129.6
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCch---hhh-hhcccccCCCCccEE
Q 007951 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGH-LQSMGLDFPKNIGVI 233 (583)
Q Consensus 159 ~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~-ie~~~i~~p~dv~VI 233 (583)
..|+.. +.|..|+++++|++|+-+|-.. +.+++++|.+++++|++|....-++ +.+ ++. .=++|+.|.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 468876 6778899999999999999766 7899999999999999998776654 222 222 226899999
Q ss_pred EeccCC-CchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhh
Q 007951 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLG 311 (583)
Q Consensus 234 ~v~Png-Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG 311 (583)
..||-+ ||+. | -.. ++ ..-+++++++....|++..|.. +++. .++.+..+-+|-
T Consensus 199 S~HPaaVPgt~-------G-------q~~-i~-egyAtEEqI~klveL~~sa~k~ay~~P--------A~lvspV~DMgS 254 (342)
T PRK00961 199 SYHPGAVPEMK-------G-------QVY-IA-EGYADEEAVEKLYEIGKKARGNAFKMP--------ANLIGPVCDMCS 254 (342)
T ss_pred ccCCCCCCCCC-------C-------cee-cc-cccCCHHHHHHHHHHHHHhCCCeeecc--------hhhcchhhhHHH
Confidence 999932 2222 2 222 22 4467899999999999999975 2232 245555555555
Q ss_pred HHHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 312 AVHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 312 ~~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
.+.+ .+..-++.+++ .|-|.+.+-..+.+++.. ++.|+.++|+.+|.+.+..
T Consensus 255 ~VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLnP 311 (342)
T PRK00961 255 AVTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALDP 311 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcCH
Confidence 5555 34555666665 599999999999999875 9999999999999999876
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=100.89 Aligned_cols=215 Identities=11% Similarity=0.134 Sum_probs=136.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----------cHHHHHHcCceecC---------CCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN---------GTL 169 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----------s~~~A~~~G~~~~d---------~t~ 169 (583)
..|++|+|||.|.||..+|..+..+ |++|++.+...+. .+++..+.|-.... ...
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 4568999999999999999999988 9998876654321 11222222211000 002
Q ss_pred CCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.++ +.+++||+||=+++.+.-. +++.++.+.++++++|. -++++.+..+.. .....-+||..|+=.|.+.++
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~- 481 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ- 481 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc-
Confidence 344 4679999999999976664 69999999999999874 678888877765 223335799999988887731
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHH
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFT 325 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~V 325 (583)
.-- |.++...+.+.++.+.+++..+|..-++- .+ .. +-+.+=+.. ++..+ -.++
T Consensus 482 ------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~v----~d--~p-----GFi~NRi~~~~~~ea-~~lv 536 (737)
T TIGR02441 482 ------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIVV----KD--GP-----GFYTTRCLGPMLAEV-IRLL 536 (737)
T ss_pred ------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEEE----CC--cC-----CchHHHHHHHHHHHH-HHHH
Confidence 111 45577889999999999999999642111 11 11 112222222 22222 2467
Q ss_pred HcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 007951 326 ENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (583)
Q Consensus 326 e~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~ 361 (583)
+.|+++++-=.. +... +| --.++-..|++.+++.
T Consensus 537 ~eGv~~~~ID~a-~~~~G~p~G-P~~l~D~vGld~~~~v 573 (737)
T TIGR02441 537 QEGVDPKKLDKL-TTKFGFPVG-AATLADEVGVDVAEHV 573 (737)
T ss_pred HcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhHHHHHHH
Confidence 889988654443 2221 13 2355556666544443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-07 Score=105.19 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=98.1
Q ss_pred eecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
++.|+|.-.. ....|.| |+|||||+|+||.++|+.|+.. |.+|+++++.. ..+.+.+.|+.. ..+.
T Consensus 121 ~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~l 187 (525)
T TIGR01327 121 LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDDL 187 (525)
T ss_pred HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCCH
Confidence 3445664221 2356899 9999999999999999999977 88887665532 234455667653 3579
Q ss_pred hhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +.-+++..+. ...+||....|. +.+
T Consensus 188 ~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gAaLDVf~~EP~-~~~- 264 (525)
T TIGR01327 188 DELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR-AAALDVFEKEPP-TDN- 264 (525)
T ss_pred HHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee-EEEEecCCCCCC-CCC-
Confidence 9999999999999996644 45664 577899999988755 3321 2233332221 234666666662 222
Q ss_pred hHHhHhccccccCCCceEEEeecCC
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
.++.- -+.+++||-.
T Consensus 265 --pL~~~--------~nvi~TPHia 279 (525)
T TIGR01327 265 --PLFDL--------DNVIATPHLG 279 (525)
T ss_pred --hhhcC--------CCeEECCCcc
Confidence 12322 4677888874
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=98.10 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=99.4
Q ss_pred eeeccccccc----cchhhhcCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC
Q 007951 93 IVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (583)
Q Consensus 93 v~~~~r~~f~----~~~~~l~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~ 167 (583)
-++.|+|... .....|.| +++||||+|++|..+|+.++ .- |.+|++.++... .+.....|..
T Consensus 124 ~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~---- 190 (323)
T PRK15409 124 RVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR---- 190 (323)
T ss_pred HHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE----
Confidence 3456667522 12357899 99999999999999999987 43 888776554321 2223345554
Q ss_pred CcCCHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccC
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
..+.+|++++||+|++++|-... ..++. +....||+|++++ .+-|-. +.-+++..+. ....||..-.|-
T Consensus 191 -~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~-gAaLDVf~~EP~ 268 (323)
T PRK15409 191 -YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH-AAGLDVFEQEPL 268 (323)
T ss_pred -ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEeecCCCCCC
Confidence 45899999999999999995554 45665 6888999999877 444421 2334332221 235677766664
Q ss_pred CCchhhHHhHhccccccCCCceEEEeecCC-CCHHHH
Q 007951 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (583)
Q Consensus 239 gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeal 274 (583)
.+.+. ++. =-|.+++||-. .+.++.
T Consensus 269 ~~~~p---L~~--------~~nvilTPHia~~t~e~~ 294 (323)
T PRK15409 269 SVDSP---LLS--------LPNVVAVPHIGSATHETR 294 (323)
T ss_pred CCCch---hhc--------CCCEEEcCcCCCCcHHHH
Confidence 32322 222 14778888863 344443
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=96.69 Aligned_cols=162 Identities=22% Similarity=0.229 Sum_probs=98.3
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--H----cCceecCCC
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----AGFTEENGT 168 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--~----~G~~~~d~t 168 (583)
+.|+|.-. ....+.| ++|||||+|.||..+|+.|+.. |.+|++.++...+...... . ..+......
T Consensus 145 ~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (347)
T PLN02928 145 KARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGG 216 (347)
T ss_pred HcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccccccccccCc
Confidence 44555422 2356899 9999999999999999999876 8888776654221111100 0 000000012
Q ss_pred cCCHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCC
Q 007951 169 LGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~Png 239 (583)
..+.+|++++||+|++++|-... ..++. +....||+|++|+.+ -|-. +.-+++..+. ...+||....|--
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~-gAaLDV~~~EP~~ 295 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG-GLAIDVAWSEPFD 295 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEEccCCCCCCC
Confidence 45889999999999999995544 45665 688899999988744 4421 2333332221 2456777777743
Q ss_pred CchhhHHhHhccccccCCCceEEEeecCC-CCHHHHHH
Q 007951 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (583)
Q Consensus 240 Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~ 276 (583)
+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 296 ~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 296 PDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 3332 2221 4678899873 44444433
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=104.41 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=98.5
Q ss_pred ecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+.|+|.-.. ....|.| |+|||||+|+||..+|+.|+.. |.+|+++++.. ..+.+...|+.. .+.+
T Consensus 124 ~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~l~ 189 (526)
T PRK13581 124 KAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VSLD 189 (526)
T ss_pred HcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----EcHH
Confidence 456664321 2356889 9999999999999999999987 88887666542 234455667763 3899
Q ss_pred hhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
|++++||+|++++|.... ..++. +....||+|++|+.+ -|-. +..+++..+. ....||....|. |.+.
T Consensus 190 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gAaLDVf~~EP~-~~~p- 266 (526)
T PRK13581 190 ELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA-GAALDVFEKEPP-TDSP- 266 (526)
T ss_pred HHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee-EEEEecCCCCCC-CCch-
Confidence 999999999999997654 45664 688999999988754 3321 2233332222 234666666662 2222
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++.- -+.+++||-.
T Consensus 267 --L~~~--------~nvilTPHia 280 (526)
T PRK13581 267 --LFEL--------PNVVVTPHLG 280 (526)
T ss_pred --hhcC--------CCeeEcCccc
Confidence 2322 3677888874
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=97.14 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=92.5
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
+.|+|.... ...++| ++|||||+|+||..+|+.|+.. |.+|++..+..++ . .++.. ..+..+.++
T Consensus 122 ~~~~w~~~~-~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~e 186 (312)
T PRK15469 122 NSSHWQPLP-EYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELSA 186 (312)
T ss_pred HhCCcCCCC-CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHHH
Confidence 445664321 245789 9999999999999999999977 9988776654321 1 12221 011357889
Q ss_pred hhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCCCchhhH
Q 007951 175 TISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (583)
Q Consensus 175 av~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR 245 (583)
++++||+|++++|.... ..++. +....||+|++|+.+ =|-. +..+++..+. ....||..-.|--+.+.
T Consensus 187 ~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~-gaalDVf~~EPl~~~~p-- 263 (312)
T PRK15469 187 FLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK-GAMLDVFSREPLPPESP-- 263 (312)
T ss_pred HHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee-eEEecCCCCCCCCCCCh--
Confidence 99999999999996655 45665 588899999988744 3321 2334332221 22456665555321221
Q ss_pred HhHhccccccCCCceEEEeecCC
Q 007951 246 RLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 246 ~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++.. -|.+++||-.
T Consensus 264 -l~~~--------~nvi~TPHia 277 (312)
T PRK15469 264 -LWQH--------PRVAITPHVA 277 (312)
T ss_pred -hhcC--------CCeEECCcCC
Confidence 2221 4677888864
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-08 Score=88.17 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=67.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+++ ++|+|||+|.||.++++.|++. | .++.+.++..++..+.+.+.+.........+..++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 566 8999999999999999999987 6 5677776654444444554443100001456777789999999999
Q ss_pred cchHH-HHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~-~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+..+ .+-.......+++|++|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 99886 11111112346889998887544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-07 Score=81.84 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=58.6
Q ss_pred hhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 299 ~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
++++|+..++++||+|| +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|+.+.
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tPg 74 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTPG 74 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-TT
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCCC
Confidence 34788899999999999 79999999999999999999999999999 9999998885 89999999764
|
... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.7e-07 Score=92.68 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=93.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..++| ++|||||+|.+|..+|+.++.- |.+|++..+.... ..... ..+.+|++++||+|+++
T Consensus 143 ~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-----~~~l~ell~~sDiv~l~ 204 (314)
T PRK06932 143 TDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-----YTPFEEVLKQADIVTLH 204 (314)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc-----cCCHHHHHHhCCEEEEc
Confidence 46899 9999999999999999999865 8887655432111 11111 34789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||+|++|+ .+-|-. +..+++..+. ....||....|-.+.+.....+.+
T Consensus 205 ~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~-gAaLDV~~~EP~~~~~pl~~~~~~------ 277 (314)
T PRK06932 205 CPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA-GAALDVLVKEPPEKDNPLIQAAKR------ 277 (314)
T ss_pred CCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc-EEEEecCCCCCCCCCChhhHhhcC------
Confidence 994444 45665 6788999999877 555532 3334432222 345677777774433332111111
Q ss_pred CCceEEEeecCC-CCHHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~a 277 (583)
=-|.+++||-. .+.++.+..
T Consensus 278 -~pnvilTPHia~~t~e~~~~~ 298 (314)
T PRK06932 278 -LPNLLITPHIAWASDSAVTTL 298 (314)
T ss_pred -CCCEEECCccccCcHHHHHHH
Confidence 13677888863 455555443
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9e-06 Score=84.64 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=96.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------cCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t-------~~d~~Eav~~ADIV 182 (583)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999998 99988877753 233445565321 110 11222356789999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhcccccCCCCccEE------EeccCCCchhhHHhHhccccc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-~~ie~~~i~~p~dv~VI------~v~PngPg~~vR~lf~~G~e~ 254 (583)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. .|+ .....+|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999888888999999999887754 56667752 23333 33432 233 33445565541 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCC
Q 007951 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (583)
Q Consensus 255 ~G~Gv~aliAv~qd~s-----geale~a~ala~aIG~~ 287 (583)
.|.|... +......+ .+..+...+++...|..
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 1344433 44332222 35556667788888865
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-06 Score=95.12 Aligned_cols=346 Identities=12% Similarity=0.122 Sum_probs=189.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHH-----------HHHcCceecC---------C
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------G 167 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~d---------~ 167 (583)
+.+++|+|||.|.||..+|.-+. .. |++|++.+...+ ..+. ..+.|-.... .
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 379 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS 379 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE
Confidence 35689999999999999999887 77 999887665432 2222 2222221000 0
Q ss_pred CcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
...+. +++++||+||=++|.+.- .+++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+.+
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~ 455 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM 455 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC
Confidence 02344 568999999999997655 369999999999999874 778888877765 22333479999998888773
Q ss_pred HHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhh-HHHHHHHHHHHH
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRR 323 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG-~~pAlieAl~d~ 323 (583)
+ .-= |.++...+++.++.+.+++..+|...++- .+ .. +-+.+ .+.+++..+. .
T Consensus 456 ~-------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~v----~d--~p-----Gfi~nRl~~~~~~EA~-~ 509 (708)
T PRK11154 456 P-------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIVV----RD--GA-----GFYVNRILAPYINEAA-R 509 (708)
T ss_pred c-------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEEE----ec--cC-----cHHHHHHHHHHHHHHH-H
Confidence 1 112 55688899999999999999999752211 11 11 11222 2223333333 5
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHHhccCChhhhH
Q 007951 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRS 400 (583)
Q Consensus 324 ~Ve~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~~I~sG~far~ 400 (583)
+++.|+++++-=.. +..+ .| --.++-..|++.+++.... -...+++. +.|. ..+++. |..|.+.++
T Consensus 510 lv~eGv~~~dID~a-~~~~G~p~G-Pf~~~D~~Gld~~~~i~~~-l~~~~~~~----~~~~-~~l~~~---v~~g~~G~k 578 (708)
T PRK11154 510 LLLEGEPIEHIDAA-LVKFGFPVG-PITLLDEVGIDVGTKIIPI-LEAALGER----FSAP-AAFDKL---LNDDRKGRK 578 (708)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhhHHHHHHHHH-HHHHcCCC----CCCC-HHHHHH---HHCCCCccc
Confidence 67778876543322 2211 13 3345555666554443321 11223332 2221 234443 445666655
Q ss_pred HHHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCc--chhHHHHHHHHHHHHHHHHhCC--Chhhhh
Q 007951 401 VVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHP--FTAGVYAALMMAQIEILRKKGH--SYSEII 476 (583)
Q Consensus 401 ~~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~--~~~g~~~~~~~a~~~~l~~~gh--~~se~~ 476 (583)
.++.+|.-.+ + -+.++...-..+-+.++. .+.. .+.| +.+-++.+++---+.+ -++|. ++ |-+
T Consensus 579 ---~g~GfY~y~~-~---~~~~~~~~~~~~~~~~~~-~~~~---~~~~g~i~~Rll~~~~nEa~~l-l~eGvva~~-~dI 645 (708)
T PRK11154 579 ---NGRGFYLYGQ-K---GKKSKKQVDESVYPLLGI-TPQS---RLSANEIAERCVMLMLNEAVRC-LDEGIIRSA-RDG 645 (708)
T ss_pred ---CCceEEECCC-C---cccccccCCHHHHHHhcc-CCCC---CCCHHHHHHHHHHHHHHHHHHH-HHCCCcCCH-HHH
Confidence 2334432211 0 000011111112222211 1110 1222 2233444444444444 45564 55 445
Q ss_pred hhhHHHHhh------hcchhhhhccchhhhhhcchhhh-cccccccc
Q 007951 477 NESVIESVD------SLNPFMHARGVSFMVDNCSTTAR-LGSRKWAP 516 (583)
Q Consensus 477 ne~~~e~~~------sl~p~~~~~g~~~m~~~cs~ta~-~g~~~w~~ 516 (583)
|..+.-.+- =.+.++..-|++-++..+..-++ +|. .|.|
T Consensus 646 D~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p 691 (708)
T PRK11154 646 DIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTP 691 (708)
T ss_pred HHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCC
Confidence 655554442 22346777899999888887765 464 3544
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=88.77 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=109.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceecC---------CCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~d---------~t~~d 171 (583)
|+||+|||.|.||+.+|..+... |++|++.+.+.+ ++.++..+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999998877 899888776522 223333444422110 00122
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+. ++++||+||=+++-+.- .+++.++-.+.+|+++| +-.+++++..+.+.. . ..-+|+..|+=-|.+.+
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~-~--rper~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEAL-K--RPERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHh-C--CchhEEEEeccCCCCcc----
Confidence 22 78999999999995544 46999999999999998 477888877775522 2 22369999998887773
Q ss_pred hccccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 249 ~~G~e~~G~Gv~al-iAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+ +.++...+++.++.+.+++..+|.+
T Consensus 149 -----------~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 149 -----------PLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 221 3446677889999999999999943
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=90.07 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=71.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|+|||+|.+|.++|+.|+.. |.+|++..|...+ .+.+.+.|.... ...+..+.++++|+||+++
T Consensus 148 ~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEECC
Confidence 5678 9999999999999999999987 8888888876433 444555666520 1235678889999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|...+. ++..+.++++++|++.+.
T Consensus 218 P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 218 PALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred ChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 875321 346677899999887743
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-06 Score=91.37 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhcc---CCeEEEeccchHH-HH
Q 007951 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (583)
Q Consensus 122 mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~---ADIVILavpd~a~-~~ 193 (583)
||.+||+||.++ |++|.+++|..++..+..... |+.. ..+++|+++. +|+||+++|+... .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988766655544432 4554 6788888874 8999999998765 56
Q ss_pred HHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 194 Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
|++++.++|.+|.+|++.+-.... .... . .-.+++.+| -+|-.-|.. .- -.|. + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~-~-l~~~Gi~fv-dapVSGG~~------gA----~~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK-E-LAEKGIHFI-GMGVSGGEE------GA----LHGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-H-HHhcCCeEE-ecCCCCCHH------HH----hcCC-E-EEEeC--C
Confidence 888999999999999988643211 1111 1 113567766 566222222 00 1354 4 44566 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 007951 271 GRATNVALGWSVALGSP 287 (583)
Q Consensus 271 geale~a~ala~aIG~~ 287 (583)
.++.+.++-+++.+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=92.94 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=93.4
Q ss_pred cccccceeeeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 86 LADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 86 ~~~~~e~v~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
|-+-.|++.. |+|... .....++| |+|||+|+|++|..+|++|+.. |..+ .+....+...+.+.+.+.
T Consensus 136 ~~~g~~~~~~-g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i-~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEMVRN-GGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVI-LYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhhhhc-CCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------ccee-eeecccCCchhhHHHhcc
Confidence 4444554444 456111 12478899 9999999999999999999986 8444 444443445666666665
Q ss_pred eecCCCcCCHhhhhccCCeEEEeccchHHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEE
Q 007951 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVI 233 (583)
Q Consensus 163 ~~~d~t~~d~~Eav~~ADIVILavpd~a~~-~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI 233 (583)
. ..|.++.+.++|+|+++.|..... .++. ++..+||+|.+|+ .+=|-- ..-+.+. -....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG-~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG-KIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC-Cccccccccc
Confidence 5 358899999999999999977664 5776 6899999999876 554421 2223332 2224577888
Q ss_pred Eecc
Q 007951 234 AVCP 237 (583)
Q Consensus 234 ~v~P 237 (583)
---|
T Consensus 281 ~~EP 284 (336)
T KOG0069|consen 281 EPEP 284 (336)
T ss_pred CCCC
Confidence 7777
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=94.95 Aligned_cols=127 Identities=22% Similarity=0.249 Sum_probs=83.8
Q ss_pred ecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+.|+|.-.. ....|.| |+|||||+|++|..+|+.++.- |.+|+++++... ....++.. ..+.+
T Consensus 135 ~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~l~ 198 (409)
T PRK11790 135 HRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGSLE 198 (409)
T ss_pred HcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCCHH
Confidence 445664221 2356899 9999999999999999999876 888866554311 11123332 45899
Q ss_pred hhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccC
Q 007951 174 ETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 174 Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
|++++||+|++++|-.. ...++. +....||+|++|+ .+-|-. +..+++..+. ....||....|.
T Consensus 199 ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~-gaalDVf~~EP~ 271 (409)
T PRK11790 199 ELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA-GAAIDVFPVEPK 271 (409)
T ss_pred HHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce-EEEEcCCCCCCC
Confidence 99999999999999554 445665 6788999999877 444432 2333332221 234566655563
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=91.49 Aligned_cols=142 Identities=21% Similarity=0.189 Sum_probs=92.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|.+|..+|+.++.- |.+|+++++.... .+.. ..+.+|++++||+|+++
T Consensus 144 ~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-----~~~l~ell~~sDiv~l~ 204 (317)
T PRK06487 144 VELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-----RLPLDELLPQVDALTLH 204 (317)
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc-----ccCHHHHHHhCCEEEEC
Confidence 46899 9999999999999999999865 8888765543211 1122 34789999999999999
Q ss_pred ccchHH-HHHHH-HHHhcCCCCcEEE-EecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccC
Q 007951 186 ISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 186 vpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
+|-... ..++. +....||+|++++ .+-|-. +.-+++..+. ...+||.-..|-.+.+. ++...
T Consensus 205 lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~-gAaLDVf~~EP~~~~~p---l~~~~----- 275 (317)
T PRK06487 205 CPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG-GAATDVLSVEPPVNGNP---LLAPD----- 275 (317)
T ss_pred CCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee-EEEeecCCCCCCCCCCc---hhhcC-----
Confidence 995544 45665 6888999999877 444431 3334332222 34567777777433332 22100
Q ss_pred CCceEEEeecCC-CCHHHHHH
Q 007951 257 AGINSSFAVHQD-VDGRATNV 276 (583)
Q Consensus 257 ~Gv~aliAv~qd-~sgeale~ 276 (583)
=-|.+++||-. .+.+..+.
T Consensus 276 -~pnvilTPHia~~t~e~~~~ 295 (317)
T PRK06487 276 -IPRLIVTPHSAWGSREARQR 295 (317)
T ss_pred -CCCEEECCccccCCHHHHHH
Confidence 03677888863 34444433
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-06 Score=83.18 Aligned_cols=149 Identities=20% Similarity=0.184 Sum_probs=105.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh---ccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav---~~ADIVILavpd 188 (583)
|+||.||+|.||..+.++|.+. |++++ +++.++...+.+..+|... +.++.|.+ ...-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99864 5666677888999999764 55666654 456899999998
Q ss_pred h-HHHHHHHHHHhcCCCCcEEEEecCchhhh-hhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 189 A-AQADNYEKIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 189 ~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~-ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
. ....+++++++.|.+|.+|++-.--+.+. +........++++++-+=-.+-..-.+ .|... -+.
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~-----------~G~~l--MiG 136 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAE-----------RGYCL--MIG 136 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhh-----------cCceE--Eec
Confidence 8 45679999999999999999875543221 111011335788888654433211111 23333 344
Q ss_pred CCCCHHHHHHHHHHHHHhCC
Q 007951 267 QDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~ 286 (583)
. +.++.+...-+|+++--
T Consensus 137 G--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 137 G--DEEAVERLEPIFKALAP 154 (300)
T ss_pred C--cHHHHHHHHHHHHhhCc
Confidence 4 67899999999999863
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=85.06 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=62.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----------------cCceecCCCcCCHhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----------------~G~~~~d~t~~d~~Ea 175 (583)
|||+|||+|.||..+|..+. . |++|++.+++ +...+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 58999999999999996554 5 8887655544 433444332 11111 002346778
Q ss_pred hccCCeEEEeccch-----------HHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 176 v~~ADIVILavpd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++||+||+|+|.. ...+++++|.+ +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999954 44567788877 7999988765444
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-05 Score=77.51 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=139.4
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEecc-chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhccc-ccCCCCccEEEe
Q 007951 158 RAAGFTEENGTLGDIYETISGSDLVLLLIS-DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG-LDFPKNIGVIAV 235 (583)
Q Consensus 158 ~~~G~~~~d~t~~d~~Eav~~ADIVILavp-d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~-i~~p~dv~VI~v 235 (583)
+..|+.. ..|..|+++++|+||-=.| -..|+++++++.+.+++|+||+.+.-+....+.... -.-+++.+|-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467775 5678899999999999887 456789999999999999999988776432111100 012468999999
Q ss_pred ccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH
Q 007951 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (583)
Q Consensus 236 ~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA 315 (583)
|| +..+++ +|--+ |+ ..-++.++++..-.+.+.--+. .+. ....|.|-.+-+|..+.+
T Consensus 199 hp-g~vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HP-GTVPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CC-CCCccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHHHHH
Confidence 99 334443 34433 44 6677888887776665433221 111 122478888888888888
Q ss_pred HHHHHHHH---HH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHHHHH
Q 007951 316 IVESLFRR---FT--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYE 390 (583)
Q Consensus 316 lieAl~d~---~V--e~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e~~~ 390 (583)
++-|+.=. .| -.|-|-+.|...+.+.+.+ |++++.+.|++.|-..+.. .+-.|.+-+-.+.|+-+++...++
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeealdp--aallgtadsmnfgpladilptale 333 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALDP--AALLGTADSMNFGPLADILPTALE 333 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCH--HHhhCccccccccchHHHhHHHHH
Confidence 65554322 22 2599999999999999976 9999999999999999875 233444433345666666655443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=81.89 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=67.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|...+ +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 45678 9999999999999999999988 9998887664 4445677778998 46899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|-...+ +-.+....||+|++|..+..|.
T Consensus 86 TG~~~v--i~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDV--ITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSS--B-HHHHHHS-TTEEEEESSSST
T ss_pred CCCccc--cCHHHHHHhcCCeEEeccCcCc
Confidence 987543 1235666799999998887764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=92.80 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=66.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|||||+|+||..+|+.|+.- |.+|+++++.... ...+.. ..+.++++++||+|++.+
T Consensus 113 ~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 113 SLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFHT 175 (378)
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEeC
Confidence 5789 9999999999999999999977 9998766532111 111111 458999999999999999
Q ss_pred cchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 007951 187 SDAA-----QADNYE-KIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a-----~~~Vl~-eI~~~Lk~GaiL~~a 211 (583)
|-.. ...++. +....||+|++|+-+
T Consensus 176 PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 176 PLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred CCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 9443 334564 678889999998744
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.1e-06 Score=92.70 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=67.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 35778 9999999999999999999987 9998766543211 1 12121 46889999999999999
Q ss_pred ccchH-----HHHHHH-HHHhcCCCCcEEEEe
Q 007951 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a-----~~~Vl~-eI~~~Lk~GaiL~~a 211 (583)
+|-.. ...++. +....||+|++|+-+
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINA 206 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEEC
Confidence 99643 344665 578889999987744
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=83.84 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=111.7
Q ss_pred cccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC
Q 007951 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (583)
Q Consensus 88 ~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d 166 (583)
++-.--++.|+|...+. +-.+.| |++||||+|.+|.-.|..++.- |.+++.+++. ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 34444567788877665 788999 9999999999999999999877 8887666555 346788889988
Q ss_pred CCcCCHhhhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEE-EecC-c-----hhhhhhcccccCCCCccEEEecc
Q 007951 167 GTLGDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILG-LSHG-F-----LLGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~-~a~G-~-----~i~~ie~~~i~~p~dv~VI~v~P 237 (583)
..+.+|+++.||.|-|.+|-.. ...++. +-+..||+|.-|+ .+-| + .+.-+++.++ -..-+||.-..|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~v-aGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQV-AGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcc-cceeeecccCCC
Confidence 6799999999999999999443 345665 5677899998766 4433 3 1333444222 244567777777
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCH
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg 271 (583)
..-+.. +++ .+- -+.+.+||+..+-
T Consensus 268 p~~~~~-~~L-v~h-------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SEL-VSH-------PNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHH-hcC-------CceeecCccccch
Confidence 554422 222 221 4566799986654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.9e-05 Score=82.29 Aligned_cols=199 Identities=13% Similarity=0.063 Sum_probs=112.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-------------------ceecCCCcCCH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------------------FTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-------------------~~~~d~t~~d~ 172 (583)
|||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.-.+.+ +.. ..+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcCH
Confidence 8999999999999999999876 3346665 4444443333321111 111 3456
Q ss_pred hhhhccCCeEEEecc-ch--------------HHHHHHHHHHhcCCCCcEEEEe----cCchhhhhhcccccCCCCcc-E
Q 007951 173 YETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLS----HGFLLGHLQSMGLDFPKNIG-V 232 (583)
Q Consensus 173 ~Eav~~ADIVILavp-d~--------------a~~~Vl~eI~~~Lk~GaiL~~a----~G~~i~~ie~~~i~~p~dv~-V 232 (583)
.+++++||+||+||| |. .+..+.++|.+++++|++|+.- .|..- .+......-.++.+ .
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~ 151 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQ 151 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeE
Confidence 778999999999986 22 3456777899999999987644 34331 11110000011233 2
Q ss_pred EEecc--CCCchhhHHhHhccccccCCCceEEE-eecCC-CCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhhhhhhh
Q 007951 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGERG 307 (583)
Q Consensus 233 I~v~P--ngPg~~vR~lf~~G~e~~G~Gv~ali-Av~qd-~sgeale~a~ala~aIG~-~~vieTtf~eE~~sDlfgeqt 307 (583)
|...| -.||..+++.+. .+-++ .-..+ ...++.+.++++...+-. ..++.|+.+ +-+.-.+
T Consensus 152 v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~---- 217 (473)
T PLN02353 152 ILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKL---- 217 (473)
T ss_pred EEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHH----
Confidence 44556 234555433332 44433 22212 225678888888888742 233444433 2222222
Q ss_pred hHhhHHHH----HHHHHHHHHHHcCCCHHHHH
Q 007951 308 ILLGAVHG----IVESLFRRFTENGMNEDLAY 335 (583)
Q Consensus 308 vLsG~~pA----lieAl~d~~Ve~Gl~~e~A~ 335 (583)
..++.-+ |+..+.+.+-+.|++..+..
T Consensus 218 -~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 218 -AANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 2344333 77777777777788765443
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=89.51 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=85.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++++|||+|.+|..+|+.++.. |.+|++..+... ....|...|+. ..+.+++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~-~a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPI-CALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hHHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 36789 9999999999999999999987 888877655433 33355567876 45788999999999999
Q ss_pred ccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 186 vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+.. ..++. +....||+|++|+.++-+.....-. .+....++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~-aL~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVA-ELEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHH-HHHhcCCceeecccCCCCeEE
Confidence 753 34664 6788899999988665443111100 011123677888888665444
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.5e-06 Score=88.16 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=89.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCc-------eecC-CCcCCHhhhh
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYETI 176 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~-------~~~d-~t~~d~~Eav 176 (583)
..+.| ++|||||+|.+|..+|+.++.. +|.+|++.++........ ....|. ...+ ....+.+|++
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~-----fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell 234 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEG-----FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVL 234 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhc-----CCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHH
Confidence 56899 9999999999999999998633 388887665542211111 011221 0000 0124789999
Q ss_pred ccCCeEEEeccch-HHHHHHH-HHHhcCCCCcEEEE-ecCch------hhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 177 SGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGL-SHGFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 177 ~~ADIVILavpd~-a~~~Vl~-eI~~~Lk~GaiL~~-a~G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
++||+|++++|-. ....++. +....||+|++|+- +=|-. +..+++..+. ...+||.--.|- |... +
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~-gAaLDVf~~EP~-~~~~---L 309 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF-RVGLDVFEDEPY-MKPG---L 309 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee-EEEEeCCCCCCC-Ccch---H
Confidence 9999999999944 3445665 67889999998874 43421 2333332221 234566666663 2111 2
Q ss_pred HhccccccCCCceEEEeecCC-CCHHHH
Q 007951 248 YVQGKEINGAGINSSFAVHQD-VDGRAT 274 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd-~sgeal 274 (583)
+.. -|.+++||-. .+.+..
T Consensus 310 ~~~--------pNVilTPHiag~T~e~~ 329 (386)
T PLN02306 310 ADM--------KNAVVVPHIASASKWTR 329 (386)
T ss_pred hhC--------CCEEECCccccCcHHHH
Confidence 221 3777888863 344433
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.4e-06 Score=79.59 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=60.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--------------C---CcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------------G---TLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d--------------~---t~~d~~E 174 (583)
|||+|||+|-+|..+|..|.++ |++| +|.+.+++..+. ...|..+-. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V-~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQV-IGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEE-EEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEE-EEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 9987 466665543333 223321100 0 0356778
Q ss_pred hhccCCeEEEeccch----------HHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++++|++|+|+|.. ....+++.|.++++++++|++-+=+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 899999999999822 2456778899999999988765433
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=81.15 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=62.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||||||+|.||..++.+|.+. +.+++++...+.+. +..+.+...|... +.+.++++.++|+|++|+|++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~~ 73 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVNA 73 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChHH
Confidence 6899999999999999999875 11345443344433 3333344455543 5688888899999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
+.++..++.. .|+ +++.+.|
T Consensus 74 ~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 74 VEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHH---cCCCEEEEchH
Confidence 9888776543 454 4444443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=81.09 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.0
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| +|++|||+|.+|.+++..|+.. |.+|++.+++.. ..+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 34568 9999999999999999999987 888888777643 3566677787531 123567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+|+.. +-++....+++|.+|+|.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677889999988774
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=83.66 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=61.4
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| |+|+|||.| .||..+|.+|.+. |+.|.++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 35789 999999996 9999999999998 99988875431 256788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+++.... ++. ..+++|++|+++ |++
T Consensus 209 avg~~~~---v~~--~~ik~GaiVIDv-gin 233 (301)
T PRK14194 209 AVGRPRL---IDA--DWLKPGAVVIDV-GIN 233 (301)
T ss_pred ecCChhc---ccH--hhccCCcEEEEe-ccc
Confidence 9997643 221 128999998887 443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=84.05 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=73.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+... ....|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 3788 9999999999999999999987 888877655443 34667778886 356788999999999988
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
.. ..++. +....+|+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44565 4778899999988665544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0002 Score=74.75 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=93.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceec-CCC--c----CCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~-d~t--~----~d~~Eav~~ADIVI 183 (583)
|||+|||.|.||+-+|..|.++ |.+|.+..|..+ ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999988 888877776432 233333 3354321 111 0 01112235689999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhcccccCCCC-----ccEEEeccCCCchhhHHhHhccccccC
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKN-----IGVIAVCPKGMGPSVRRLYVQGKEING 256 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i-~~ie~~~i~~p~d-----v~VI~v~PngPg~~vR~lf~~G~e~~G 256 (583)
++||-....++++.+.+++.++++| .+--|+.. ..+.. .+|++ +..+..+...|+.+. ..|
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v~---------~~~ 143 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRVV---------FAG 143 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEEE---------Eec
Confidence 9999998899999999999998865 56678753 23333 33443 122334455666652 112
Q ss_pred CCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 257 ~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.|.. .+.... .+..+...+++...|..
T Consensus 144 ~g~~-~~G~~~---~~~~~~l~~~l~~ag~~ 170 (305)
T PRK05708 144 HGFT-WLGDPR---NPTAPAWLDDLREAGIP 170 (305)
T ss_pred eEEE-EEcCCC---CcchHHHHHHHHhcCCC
Confidence 3332 244222 23344556677777754
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=80.13 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|||||+|.||..++++|.+.. .++++. +.++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998621 156655 33444344445555666421 15678899999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
+.++..... +.|+ ++..+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988776653 4566 4444444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-05 Score=66.62 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=61.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.+|..+...+++. ..+.+++...+.++ +....+.+.|+.. ..|.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999999876 12456554444444 3334467788875 778999887 79999999999
Q ss_pred hHHHHHHHHHHh
Q 007951 189 AAQADNYEKIFS 200 (583)
Q Consensus 189 ~a~~~Vl~eI~~ 200 (583)
..+.++......
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999988877543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00033 Score=73.63 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=97.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC--------cCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t--------~~d~~Eav~~ADIVI 183 (583)
|||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-.+.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999998 8666666654 22556666687542211 112235566899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEE-EEecCch-hhhhhcccccCCCCccEE-Eecc-----CCCchhhHHhHhcccccc
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVI-AVCP-----KGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~-i~~ie~~~i~~p~dv~VI-~v~P-----ngPg~~vR~lf~~G~e~~ 255 (583)
+++|-.+..++++.+.|.+++.+.| .+-=|.. ...+.+ .+|.. .++ ++.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 9999999999999999999999854 4556664 333433 44444 232 2233 4555552 12
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 256 G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|.|... +........+..+...+.++..|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 334444 3322222224555555566777653
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=83.59 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=73.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+.| ++|+|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. +.+.+++++.+|+||.++.
T Consensus 210 l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aTG 276 (425)
T PRK05476 210 IAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTATG 276 (425)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECCC
Confidence 578 9999999999999999999988 8888877665433 4555666876 3578899999999999986
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 188 DAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
.. .++. +....||+|.+|+.++.+.
T Consensus 277 ~~---~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 NK---DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CH---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 43 3565 5778899999988776665
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00087 Score=70.63 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhhhhhcCCceEEEEecCCcc-----------------cHHHHHHcCceecC---------CCcC--CHh
Q 007951 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----------------SFAEARAAGFTEEN---------GTLG--DIY 173 (583)
Q Consensus 122 mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-----------------s~~~A~~~G~~~~d---------~t~~--d~~ 173 (583)
||..+|..+..+ |++|++.+...+. .++.+.+.|..... .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999999888 9999888765421 11222333322100 0011 256
Q ss_pred hhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhc
Q 007951 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~ 250 (583)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 7899999999999977664 47889999999999874 556666666654 222234799999977776631
Q ss_pred cccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCC
Q 007951 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (583)
Q Consensus 251 G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~ 330 (583)
.-- +..+...+.+.++.+..++..+|... +. ..+.. . -++...+.+++.-++..+.+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~~-v~---v~d~~-----G-fi~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKVP-VV---CGPSP-----G-YIVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCcE-EE---ecCCC-----C-cchHHHHHHHHHHHHHHHHhCCCC
Confidence 111 34577888999999999999999752 21 11111 1 134444455555555566677799
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHhc
Q 007951 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNSF 362 (583)
Q Consensus 331 ~e~A~~~~~q~l------~Glia~li~e~G~~~m~d~v 362 (583)
+++......... .| .-+++-..|+...++..
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~~ 244 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYAS 244 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHHH
Confidence 988776544331 24 34555666765554443
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-05 Score=80.53 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=102.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC----ceecCCCcCCHhhh---hccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G----~~~~d~t~~d~~Ea---v~~ADIVIL 184 (583)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-.+.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999887766555544 232 4566654 567788999
Q ss_pred eccchH-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCc
Q 007951 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 185 avpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~----i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv 259 (583)
.|+-.. ...+++++.|+|.+|.+|+|-.--. +...++ .-.+++.||..==.+ |.|.--.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 988753 3568889999999999999875432 222221 224577787532211 11000011
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|+ |-|.. +.++.+.+.-++..|-+.
T Consensus 139 PS-iMpGG--~~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGG--QKEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCC--CHHHHHHHHHHHHHHHhh
Confidence 22 44444 678999999999999764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=84.60 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=83.4
Q ss_pred cccchhhhhhhhcccccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007951 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (583)
Q Consensus 74 ~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~ 152 (583)
-|-...+.+--+.-|+-+-++.+ +-.. .-.+.| ++++|||+|.+|..+|+.++.. |.+|++..+.. .
T Consensus 221 vnds~~K~~fDn~yGtgqS~~d~----i~r~t~i~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp-~ 288 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSLPDG----LMRATDVMIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDP-I 288 (477)
T ss_pred EcChhhhhhhhccccccccHHHH----HHHhcCCccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc-h
Confidence 34444444444455666654442 2212 223788 9999999999999999999977 88887765543 2
Q ss_pred cHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 153 SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 153 s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
....|...|+.. .+.+++++++|+|+.++..... +..+....||+|++|+.++.+
T Consensus 289 r~~eA~~~G~~v-----v~leEal~~ADVVI~tTGt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 289 CALQALMEGYQV-----LTLEDVVSEADIFVTTTGNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred hhHHHHhcCCee-----ccHHHHHhhCCEEEECCCCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 335677788863 4678999999999987765422 225677789999998866544
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.8e-05 Score=79.62 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+.+ ++|+|||.|.||..+++.|+.. | .+|++.+|..++..+.|.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999985 5 4677777776666677887776421 0234567889999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEEec
Q 007951 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~L-k~GaiL~~a~ 212 (583)
+.....++++.+.... +++.+++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.7e-05 Score=69.15 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=69.9
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC----------cCCHhhhhccCCeEE
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t----------~~d~~Eav~~ADIVI 183 (583)
|+|||.|+||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999888 99987776653 3444556677532111 111123567899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcE-EEEecCch
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~ 215 (583)
+++|-.+..++++.+++++.+++. |++--|+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 999999999999999999999865 55667775
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.4e-05 Score=80.85 Aligned_cols=92 Identities=23% Similarity=0.261 Sum_probs=72.8
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.+|...++.++.. |.+|++..+. +.....|...|+.. .+.+++++.+|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEECC
Confidence 4678 9999999999999999999988 8888775544 45578888999863 45678899999999998
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
... .++. +....+++|.+|+.++.+
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 753 3454 467789999988766543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.4e-05 Score=67.55 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.9
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcC-ceecCCCcCCHhhh-hccCCeEEEeccc
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G-~~~~d~t~~d~~Ea-v~~ADIVILavpd 188 (583)
||+||| .|.+|..++..|.+. .++++... .+..++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 589999999999884 15554333 222221112222222 11000000111111 2589999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999888767778999999999886
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.3e-05 Score=78.45 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=61.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHc---C--ceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~---G--~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|+|||+|.||..+++.+... .+ .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~-----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV-----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 8999999999999999877652 03 47888888766655555543 4 332 46788899999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+.. ..++.. ..++||++|.
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEE
Confidence 9865 233332 4578998543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=77.07 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|+||| .|.||..+|.+|.+. |+.|.++.... .+.++++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 4789 9999999 999999999999988 99988874221 1346788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++...+ +++. .+++|++|+++ |++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDv-Gin 232 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDV-GIN 232 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEc-CCc
Confidence 997653 3321 28999988887 443
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00072 Score=68.80 Aligned_cols=212 Identities=12% Similarity=0.044 Sum_probs=127.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
..++|||.|..|.+..+..-+- ++.. + -..++|.+.|+. .+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c--s-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC--S-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee--h-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5789999999999954433222 2221 1 122344555443 3322 2344444555678888888
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhh-hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|..+.++.... .-.||++|.+++|++-. .+.. .-+.+.--..+||++......+--.+- .+.-..|+ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 88666665543 34799999999999733 2211 112244456799998877765544432 23333232 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gl 345 (583)
. +.....+++.|+..+|+.... +.|..-.+||..++. ++.+.++.--..+....+|.++-++.-+.+--+.|
T Consensus 146 a--D~~g~ai~q~la~emgg~~f~----V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g- 218 (289)
T COG5495 146 A--DDVGYAIVQSLALEMGGEPFC----VREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG- 218 (289)
T ss_pred c--cccccHHHHHHHHHhCCCcee----echhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-
Confidence 3 334556788999999997321 235566799998866 56666666666778889999988777664433433
Q ss_pred HHHHHHHhcH
Q 007951 346 ISKIISTQGM 355 (583)
Q Consensus 346 ia~li~e~G~ 355 (583)
..+-.++.|.
T Consensus 219 ~~~n~~qrg~ 228 (289)
T COG5495 219 ALENTLQRGQ 228 (289)
T ss_pred HHHHHHHhhh
Confidence 3333334443
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=76.79 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH---HcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~---~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
-+++||||+|.||..+++.|.... ...+|.++++..++..+.+. +.|+.. ..+.+.+|++++||+|+.|||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 378999999999999998887641 12367777776554443333 345321 115789999999999999998
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
... .++. ...+|||+.|.-++..
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCC
Confidence 642 2332 2356899987755544
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0008 Score=72.94 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=115.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-------------------HHHHHHcC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-------------------~~~A~~~G-~~~~d~t~~d 171 (583)
.+|+|||+|-+|..+|..+.++ |++| +|.+.+++. .+.+.+.| +.. +++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7899999999999999999988 8886 566655422 23455666 332 345
Q ss_pred HhhhhccCCeEEEeccchH----------HHHHHHHHHhcCCCCcEEEEe----cCch---hh-hhhc-ccccCCCCccE
Q 007951 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLS----HGFL---LG-HLQS-MGLDFPKNIGV 232 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a----------~~~Vl~eI~~~Lk~GaiL~~a----~G~~---i~-~ie~-~~i~~p~dv~V 232 (583)
..+ ++.||++++|||... .....+.|++.|++|++|++= .|.. +. .++. .++.++.|+.+
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 544 459999999998421 123445799999999987643 4443 11 1222 44566555443
Q ss_pred EEecc--CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHh
Q 007951 233 IAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILL 310 (583)
Q Consensus 233 I~v~P--ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLs 310 (583)
. -+| -.||...+++-. .+-+|. ..+++..+.+.++-+.+=.+.+..|+... -++-...|-+ -=
T Consensus 158 a-ysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~~~~vts~~t-AEm~Kl~EN~-fR 222 (436)
T COG0677 158 A-YSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEGVIPVTSART-AEMVKLTENT-FR 222 (436)
T ss_pred e-eCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEEEEEcCChHH-HHHHHHHhhh-hh
Confidence 3 334 344666443322 333333 35778888888888887654333333221 1111111111 00
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 311 GAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 311 G~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
-.=-||+.-+.-.+-+.|++--++...
T Consensus 223 dVNIALaNElali~~~~GIdvwevIea 249 (436)
T COG0677 223 DVNIALANELALICNAMGIDVWEVIEA 249 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 001236666666667788886666554
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.2e-05 Score=68.42 Aligned_cols=99 Identities=20% Similarity=0.160 Sum_probs=67.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCce-ecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT-EENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~-~~d~t~~d~~Eav~~ADIVI 183 (583)
..+++ +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+-. ..-....+..+.+.++|+||
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 46788 9999999999999999999998 87 4888999877777777766211 00001445667889999999
Q ss_pred EeccchHHHHHHHHHHhcCCCC-cEEEEec
Q 007951 184 LLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~G-aiL~~a~ 212 (583)
.+||-... .+-++..+...+. .+++|.+
T Consensus 81 ~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 81 NATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp E-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 99997655 1222333222221 3677763
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=70.70 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVI 183 (583)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+..++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 456789 9999999999999999999998 9988766554333233333436542 23445543 799999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
.+..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6655
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00017 Score=78.72 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=57.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+.+ ++|+|||+|.||..+++.|+.. |. +|++.+|..++..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 180 ~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISST 250 (423)
T ss_pred ccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEECC
Confidence 678 9999999999999999999987 87 777888876665667777664210 1235667889999999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
+...
T Consensus 251 ~s~~ 254 (423)
T PRK00045 251 GAPH 254 (423)
T ss_pred CCCC
Confidence 8443
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00026 Score=73.90 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=60.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|+|||. |.||..+|..|.+. |..|.++.. + +.+..+.+++||+||.+
T Consensus 155 ~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 155 ELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVVA 208 (284)
T ss_pred CCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEEe
Confidence 4788 99999999 99999999999988 888877521 1 22567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++..... +. ..+++|++|+|+ |++
T Consensus 209 vg~~~~v---~~--~~ik~GavVIDv-gin 232 (284)
T PRK14179 209 IGRGHFV---TK--EFVKEGAVVIDV-GMN 232 (284)
T ss_pred cCccccC---CH--HHccCCcEEEEe-cce
Confidence 9976552 21 238999998887 443
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00065 Score=69.45 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=63.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||+ |.||..++..+.+. .+++++...+.+..........|+.. ..+.+++++++|+|+.++||..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~~ 72 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPEA 72 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHHH
Confidence 68999998 99999999888764 15666555554332222223334432 4678888888999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhh
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHL 219 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~i 219 (583)
..+++.... +.|. +|+-..|++....
T Consensus 73 ~~~~~~~al---~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 73 TLENLEFAL---EHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred HHHHHHHHH---HcCCCEEEECCCCCHHHH
Confidence 877766543 3454 3433567764433
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00059 Score=62.36 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=67.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~-----~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|+|+ |.||..+++.+.+. .++++..+.+...... +... ..|+.. ..+.++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777665555433100 1111 233333 46788999999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccC
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
|-.+-|+...+.++....+ |. +|+=..|++-..++. ...+.+.+.++ ..||
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~~~-l~~~a~~~~vl-~a~N 123 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQIDE-LEELAKKIPVL-IAPN 123 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHHHH-HHHHTTTSEEE-E-SS
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHHHH-HHHHhccCCEE-EeCC
Confidence 9999888777777765443 44 566688987332221 00123445555 5565
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00055 Score=71.71 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=65.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc---CceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|+|||+|.||..++..+... .++ +|.++.|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 8999999999999999999753 144 6777887766555555544 33320 3578889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
... .++.. .+|||+.|.-.....
T Consensus 198 s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeCc---cCCCCCEEEecCCCC
Confidence 764 34432 478998877665443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00068 Score=72.20 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH---HcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~---~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+. +.+... -..+.+.++++++||+|+-+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 244 67788877655444442 333210 12267889999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
||... .++. ...++||+.|.-+.+.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3443 3457899988766654
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00045 Score=75.40 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|..++..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 3678 9999999999999999999987 8 4788888776555566766664310 124566888999999999
Q ss_pred ccchH
Q 007951 186 ISDAA 190 (583)
Q Consensus 186 vpd~a 190 (583)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=67.55 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||||||+|.||..+++.|.+. .+.++......+....+.... .+... +.+.+++..+.|+|+.|+|+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~~ 72 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGHA 72 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCHH
Confidence 6899999999999999999864 134433332222111111111 24433 467777645699999999999
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecC
Q 007951 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
.+.++...+ |+.|+ +++...|
T Consensus 73 ~~~e~~~~a---L~aGk~Vvi~s~~ 94 (265)
T PRK13303 73 ALKEHVVPI---LKAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHH---HHcCCCEEEeChH
Confidence 887766654 34555 3444444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0023 Score=66.39 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--cCceec--CC---CcCCHhhhhccCCeE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~--~G~~~~--d~---t~~d~~Eav~~ADIV 182 (583)
++||+|||.|.||..+|..+... |+ ++++.+...+.....+.. ...... .. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 48999999999999999998876 54 777766543322222211 111100 00 02344 568999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=69.64 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=64.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++++|||+|.||..++..+... .++ +|.+..|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 7899999999999999887643 144 667777765554444442 34421 11567889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|-. + .++. ..+++|+.|.-+..+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999887665543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.001 Score=60.13 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEE-EecCC--cccHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~--s~s~~~A~~--~G~~~~d~t~~-d~~Eav~~ADIVILa 185 (583)
||+||| .|.+|..+.+.|.+. + .++++. ..++. .+.+..... .++.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1 344333 23332 123333211 11211 0011 133456899999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888876 4678888888774
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=73.88 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=60.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+.+ ++|+|||.|.||..++.+|... |. +|++.+|...+....+.+.+ ....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999987 86 68888887666666666542 210000134567889999999999
Q ss_pred ccc---hHHHHHHHHHH
Q 007951 186 ISD---AAQADNYEKIF 199 (583)
Q Consensus 186 vpd---~a~~~Vl~eI~ 199 (583)
|+- -...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 863 22345555543
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00083 Score=70.44 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++.+||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38899999999999999998864 144 677887776655544433 24321 1156899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+-.. .+++ ...++||+.|.-+..+.
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence 99543 3443 23578898776555443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00086 Score=71.84 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+-++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v-----r~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL-----LGIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh-----CCceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 337899999999999999888764 134 677887775544433332 24321 0156899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+......+++ .+.++||+.|.-...+.
T Consensus 201 T~S~~~~Pvl~--~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILT--DDMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceec--HHHcCCCcEEEecCCCC
Confidence 97543223444 13578999876555443
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=66.51 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=102.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec-C------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N------------ 166 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-d------------ 166 (583)
++.++|||.|.||..+|+-...+ |++|.+.++.. +...+|.+ .+.... -
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999888 99987766543 23333322 122110 0
Q ss_pred -CCcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 167 -~t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
.+..+..++++++|+||=++-.+.- .+++++|-..-++.+++. -.+.+.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1145677889999999876654332 346667766677887764 667777776644 333345677888777777
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
++. +.+ +.-+.+.+++.......+.+++|..
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 752 221 2336788899999999999999975
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0019 Score=69.56 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=64.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-C-CCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d-~t~~d~~Eav~~ADIVILa 185 (583)
+.+ .+|.|||.|.+|...++.++.. |.+|++.+++..+....+...|.... . ....+..+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 345 7899999999999999999987 88887776654433333334443210 0 0012356778999999999
Q ss_pred ccc--hHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd--~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
++. .....++ ++....+++|.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 2223333 45566789999888764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0012 Score=70.11 Aligned_cols=87 Identities=10% Similarity=0.156 Sum_probs=56.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.+|+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156655434443211 1222234332 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 007951 192 ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.+.. .+.|+.|.-++++
T Consensus 74 ~~~~---~~~L~aG~NVV~s 90 (324)
T TIGR01921 74 IPEQ---APYFAQFANTVDS 90 (324)
T ss_pred HHHH---HHHHHcCCCEEEC
Confidence 5444 3445566544443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.004 Score=64.11 Aligned_cols=94 Identities=12% Similarity=0.169 Sum_probs=61.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEec-CCccc--HHHHHH-----cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s--~~~A~~-----~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+||| +|.||..+++.+.+. .+++++...+ .++.. .+.+.. .|+.. +.+++++...+|+|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~DvV 72 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDVL 72 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCEE
Confidence 6899999 699999999999864 1677665554 33221 122222 23332 45677775579999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhh
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~ 217 (583)
|.++||..+.+++.... +.|. +|+-..|++..
T Consensus 73 IdfT~p~~~~~~~~~al---~~g~~vVigttg~~~e 105 (266)
T TIGR00036 73 IDFTTPEGVLNHLKFAL---EHGVRLVVGTTGFSEE 105 (266)
T ss_pred EECCChHHHHHHHHHHH---HCCCCEEEECCCCCHH
Confidence 99999998887777543 3444 45445687644
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0011 Score=64.24 Aligned_cols=96 Identities=21% Similarity=0.156 Sum_probs=61.8
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cc--eecC-CCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~--~~~d-~t~~d~~Eav~~ 178 (583)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|..++..+.+... +. ...+ ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 4678 99999996 99999999999987 888887777644433333322 21 1100 001223477889
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+||.++|.... .........+++.++.|.
T Consensus 98 ~diVi~at~~g~~--~~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 98 ADVVFAAGAAGVE--LLEKLAWAPKPLAVAADV 128 (194)
T ss_pred CCEEEECCCCCce--echhhhcccCceeEEEEc
Confidence 9999999997775 111222344567777766
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=65.98 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----------cCceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----------~G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|.||..+|..+... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999876 65 766655533221112210 01110 1245655 78999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999987
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=69.22 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|.||..++.++... .++ .+.++++..++..+.+.+ .|+.. ....+.+++++ +|+|++||
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 145 455555554433333332 24321 01457888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|... .++. ...+++|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3333 2356899987655544
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=69.42 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=63.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++++|||+|.||..++..|... .++ +|.++.|..++..+.+.+. |+.. ..+.+.++++.+||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEec
Confidence 7899999999999999999753 154 6778888766655555433 5432 11457888999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|... .++. ...+++|+.|...
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAM 223 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEee
Confidence 8643 2333 2347899877644
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.005 Score=64.45 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=64.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~--s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|++|.-++..+.+. .++++....+.++. .++.|++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 14555433333333 346788888753 1346777774 5788999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+..+.++..... +.|+.|++-...
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekPa 97 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTPA 97 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCcc
Confidence 999988776553 467777655443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=67.02 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceec-----------CCC---cCCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NGT---LGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~-----------d~t---~~d~~Eav 176 (583)
.||||+|+|.||..+++.+.+. .+++++...+...... ..+...|+... +.. ..+.+++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~ 76 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLL 76 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhh
Confidence 6899999999999999988864 1567655555433222 22343443210 000 23566777
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 77 ~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 77 EKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred ccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 8899999999999887777643 4557778888774
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0012 Score=72.29 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.++| ++|.|||.|-||.+++.+|.+. |. ++++.+|...+....+.+.| ... ....+..+.+.++|+||.
T Consensus 178 ~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIIIA 248 (414)
T ss_pred CccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEEE
Confidence 3677 9999999999999999999987 86 68888988777777777765 221 012445678899999999
Q ss_pred eccch
Q 007951 185 LISDA 189 (583)
Q Consensus 185 avpd~ 189 (583)
||+-.
T Consensus 249 aT~a~ 253 (414)
T PRK13940 249 AVNVL 253 (414)
T ss_pred CcCCC
Confidence 99853
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=65.99 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=61.6
Q ss_pred CEEEEEccchhH-HHHHHHHHHhhhhhcCC--ceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEe
Q 007951 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG-~A~A~nLrdsl~~~g~G--~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILa 185 (583)
.+|||||+|.++ ..++..+++. + +.++ +.++..++..+.+.+.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999555 5688888876 4 2332 33455556667888888751 16789998875 5999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+|+..+.++... .|+.|+-|.
T Consensus 75 tp~~~H~e~~~~---AL~aGkhVl 95 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHVL 95 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEEE
Confidence 999999887743 455676544
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00076 Score=70.94 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=53.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++++|||+|.||..++..+..-+ ++ +|.|+.|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 68999999999999999998751 44 677777765433333322 24332 125689999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
-..-..+++ ...++||+.|.-+...
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 665212333 2467889877655544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.048 Score=58.47 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=70.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhh-cCCceEEEEecC---CcccHHHHHH-----------cCceec-C-CCcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRK---GSRSFAEARA-----------AGFTEE-N-GTLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~-g~G~~ViVg~r~---~s~s~~~A~~-----------~G~~~~-d-~t~~d~~E 174 (583)
.||+|||.|+=|.++|+.+..+-.+. -+..+|..+.+. +.+.....+- -|+... + -.+.|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 68999999999999999988762211 111234433322 1110111110 011100 0 01568899
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
++++||+++..+|.+-+..++++|..++|++.. |+.+.||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 788888864
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=68.11 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHH---HHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A---~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+-++++|||+|.||..+++.+..- ..+ +|.++.|..++..+.+ .+.|+.. ..+.+.++++++||||+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEe
Confidence 337899999999999999998764 133 7788887765544333 2235432 1146789999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|+-.. .+++ ...++||+.|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98543 3443 23578999877665443
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0058 Score=64.53 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhhc-----cCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav~-----~ADIVIL 184 (583)
.+|||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. +..+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888864 1455544443333 3346688888763 1356777774 5899999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|...+.+...... +.|+.|++....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999999988877654 468888777554
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0047 Score=62.79 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec-CCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|++||||.+|..+..-+++- -.+++.++.++ ..++....+...+... +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999888863 01345444444 4333333333333332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (583)
..+...++. +.|. +|+.+-|-
T Consensus 73 v~e~~~~~L---~~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKIL---KAGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHH---hcCCCEEEEechh
Confidence 988888764 4444 55666553
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0023 Score=61.97 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred hhhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..|+| ++|.|||.|-| |..+++.|... |.+|.+..|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45788 99999999997 88799999988 88877776541 245678899999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2331 1357777777663
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=67.29 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=60.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHhh-hhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~E-av~~ADIVI 183 (583)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|..++..+.+.+. |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999988 888888887655544444432 2211 122222 345799999
Q ss_pred EeccchHHHHHHH-H-HHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYE-K-IFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~-e-I~~~Lk~GaiL~~a 211 (583)
.++|......+-+ . -...++++.+++|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754322100 0 12346677777665
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=70.42 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=61.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++..+.|.+.|... -+..+..+.+.++|+||.+|
T Consensus 176 L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 176 LKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISST 246 (414)
T ss_pred ccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEec
Confidence 777 9999999999999999999998 85 88899999888899999999542 12456678899999999997
Q ss_pred c
Q 007951 187 S 187 (583)
Q Consensus 187 p 187 (583)
.
T Consensus 247 s 247 (414)
T COG0373 247 S 247 (414)
T ss_pred C
Confidence 6
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0072 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.5
Q ss_pred CEEEEEc----cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG----~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|+||| -+..|.-+..+|++. |++|+--+.+... -.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9887544433211 135553 5677774478999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++...++++++... ..+.+|...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987653 344455555543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.007 Score=63.26 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=46.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc-------Cc--eecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~-------G~--~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999887 74 6777776554433333321 11 11 12333 4578999
Q ss_pred eEEEeccc
Q 007951 181 LVLLLISD 188 (583)
Q Consensus 181 IVILavpd 188 (583)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99998875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.002 Score=66.36 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCc-CCHhhhhccCCeEEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~-~d~~Eav~~ADIVIL 184 (583)
.+++ +++.|||.|-+|.+++..|.+. | .+|++.+|..++..+.+.+.+-.. .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 8999999999999999999987 8 488888887655555554433110 0001 133467789999999
Q ss_pred eccchHH
Q 007951 185 LISDAAQ 191 (583)
Q Consensus 185 avpd~a~ 191 (583)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.037 Score=56.13 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--C--------CcCCHhhhhccCCeEEEeccchH
Q 007951 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 121 ~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d--~--------t~~d~~Eav~~ADIVILavpd~a 190 (583)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...+.++ ....|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999988 8888877764 334444556754211 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCch
Q 007951 191 QADNYEKIFSCMKPNSILG-LSHGFL 215 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~-~a~G~~ 215 (583)
..++++.+.+++.++++|+ +.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 9999999999999887654 556764
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.036 Score=56.78 Aligned_cols=205 Identities=14% Similarity=0.167 Sum_probs=121.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceec----------CCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~----------d~t~~d 171 (583)
.||+|+|-|..|+++|.-+..+ |++|..++-..+ +...+.++.|.-.. -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999877654322 12223333443211 123578
Q ss_pred HhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEEEecC-chhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~~a~G-~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+.|++++|=.|-=|+|..-. ..+|.++-..+.|..||.-+.. |-...+-. ++ -..-..+-+||--|.--+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-gL--~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-GL--INKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-hh--hhhhheeEecCCCCCccc----
Confidence 89999999888889996654 3466666666667766654432 22111111 11 134567889995544321
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hhhhhhhhHhhHHHHHHH------HHH
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVE------SLF 321 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~s-DlfgeqtvLsG~~pAlie------Al~ 321 (583)
. ..- +.|++-.+++..+...++...+|-..+ +.+.|..- -+=-.|-++|+=.-.++. .=.
T Consensus 151 -P--------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 -P--------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred -c--------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 1 111 566777889999999999999995311 11222000 000111122221111222 234
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 007951 322 RRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 322 d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
|.-..+|+-|-+|+.-.++|+
T Consensus 218 D~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred HHHHhcCCCcchhcccchhhh
Confidence 666788999999988777764
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0071 Score=60.99 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=63.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCC----ccc-------HHHHHHcCceecCCCcCCH
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~----s~s-------~~~A~~~G~~~~d~t~~d~ 172 (583)
.+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ ++. .+.++..+... ...+.
T Consensus 22 ~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~l 91 (226)
T cd05311 22 KIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGTL 91 (226)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCCH
Confidence 4778 8999999999999999999987 76 477777762 221 23344432211 01356
Q ss_pred hhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
.++++++|+||-++|+.... +++...|.++.+|.+..
T Consensus 92 ~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 92 KEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 68889999999999865543 23444455777766443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0021 Score=68.93 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHH-cCceecCCCcCCHhhhh---ccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA-AGFTEENGTLGDIYETI---SGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~-~G~~~~d~t~~d~~Eav---~~ADIVILav 186 (583)
..||.||++.||.++++|+.+. |+.|.+++|..++.-+. +.+ .|...-+ ..+++|.+ ++--.|+|++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g--a~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG--AYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC--CCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 99999999986654322 111 1221101 35677754 5678999999
Q ss_pred cchHHHH-HHHHHHhcCCCCcEEEEec
Q 007951 187 SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+-...++ +++++.|+|.+|.+|+|-.
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 9777665 6678999999999988764
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0033 Score=68.12 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=61.4
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-----Cc---eecCCCcCCHhhhhccCC
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGSD 180 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~-----G~---~~~d~t~~d~~Eav~~AD 180 (583)
+-++++|||+|.||..++..+..-. ..+ +|.|+.|..++..+.+.+. |+ .. +.+.++++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 4478999999999999999887631 024 6778887765544433322 32 22 578999999999
Q ss_pred eEEEeccchH----HHHHHHHHHhcCCCCcEEE
Q 007951 181 LVLLLISDAA----QADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 181 IVILavpd~a----~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||+.+|+... ...+++ ...+|||+.|.
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 9999997422 123443 23578998765
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0091 Score=63.08 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=44.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--c-----Cc--eecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----GF--TEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~--~-----G~--~~~d~t~~d~~Eav~ 177 (583)
.+. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.. + +. .. ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 455 8999999999999999998877 63 655555443322222211 1 11 11 0023444 789
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0089 Score=63.76 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=58.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceec-CCCcCCHh-hhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~-d~t~~d~~-Eav~~ADIVILavp 187 (583)
+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP 77 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALP 77 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCC
Confidence 79999997 99999999998864 14565443443222112222222 1100 00122222 24578999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+..+.++..++.. .|..|+|.++-
T Consensus 78 ~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 78 HGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred cHHHHHHHHHHHh---CCCEEEECCcc
Confidence 9999888887643 58888877663
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0045 Score=66.59 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=73.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| |++.|.|||-.|...|+.+|.. |.+|+|..-+. -..-+|.-+||. +...+|+++.+|++|-+|
T Consensus 206 liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDP-I~AleA~MdGf~-----V~~m~~Aa~~gDifiT~T 272 (420)
T COG0499 206 LLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDP-IRALEAAMDGFR-----VMTMEEAAKTGDIFVTAT 272 (420)
T ss_pred eecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCc-hHHHHHhhcCcE-----EEEhHHhhhcCCEEEEcc
Confidence 3456 8999999999999999999977 88988875443 334566678998 578999999999999999
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
-... |+. +....||+|++|.-+.-|.
T Consensus 273 Gnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 273 GNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred CCcC---ccCHHHHHhccCCeEEecccccc
Confidence 8754 443 5666799999988776575
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.006 Score=63.95 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=58.9
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|+| ++|.|||.|. +|..+|.-|... |..|++..++. .+..+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 155 DLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVSA 208 (286)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEEC
Confidence 5889 9999999988 999999999987 88887775421 2456789999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-... +.. ..+++|++|+|++
T Consensus 209 vg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 209 VGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCcc---cCH--HHcCCCcEEEEcC
Confidence 986432 322 3578999888874
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.012 Score=61.82 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=44.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCceec---CCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE---NGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~~---d~t~~d~~Eav~~ADIVIL 184 (583)
|||+|||.|.+|.++|..|... |+ ++++.++..++....+.. ...... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999987 74 566655543322212221 111000 0001343 56899999999
Q ss_pred eccc
Q 007951 185 LISD 188 (583)
Q Consensus 185 avpd 188 (583)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9874
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=62.10 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=42.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcc----cHHHHHH---cC--ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~----s~~~A~~---~G--~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.++|..+... |+ ++++.+...+. ..+.... .+ .... ...+. +++++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998877 75 65554443332 1222211 11 1110 12455 67899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99965
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.01 Score=64.71 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=61.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--------------CC---CcCCHhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------d~---t~~d~~E 174 (583)
|||+|||.|-.|...+..|.+. |++|+ +.+.++...+. ...|..+= .+ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv-~vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVV-CVDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEE-EEeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999988 98875 45544322222 22222100 00 1467889
Q ss_pred hhccCCeEEEeccch----------HHHHHHHHHHhcCCCCcEEE
Q 007951 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 175 av~~ADIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+++++|++|+|||.. ....+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999999999998732 12346678999997766654
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0057 Score=53.39 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd~ 189 (583)
.++.|+|.|..|.+++..+.+. . |+.+....+.+++..-. .-.|+.. ..++.++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999777665 2 44433333332221111 1125553 3377777666 99999999999
Q ss_pred HHHHHHHHHHh-cCCCCcEEEEec
Q 007951 190 AQADNYEKIFS-CMKPNSILGLSH 212 (583)
Q Consensus 190 a~~~Vl~eI~~-~Lk~GaiL~~a~ 212 (583)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 88888887543 3322 555554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.006 Score=67.93 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=52.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+... ....+.. .+.++|+||+|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEcC
Confidence 3567 8999999999999999999988 8888887776544444444433221 0011222 257899999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0062 Score=64.46 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=61.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||.|.||.+++..+... .++ +|.++.|..++..+.+.+. |+.. ....+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 7899999999999999999863 144 6777777755555555432 4431 11467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
|-.. .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8642 33432 23678876654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0065 Score=63.18 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=54.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCc-----eecCCCcCCHhhhhccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF-----TEENGTLGDIYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~-----~~~d~t~~d~~Eav~~ADI 181 (583)
+++ +++.|||.|-+|.+++..|.+. |. +|++.+|..++..+.+...+- .. ....+..+.++++|+
T Consensus 125 ~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aDi 195 (284)
T PRK12549 125 ASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAADG 195 (284)
T ss_pred ccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCCE
Confidence 456 8999999999999999999988 87 788888876666666554321 11 002234556788999
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
||.+||...
T Consensus 196 VInaTp~Gm 204 (284)
T PRK12549 196 LVHATPTGM 204 (284)
T ss_pred EEECCcCCC
Confidence 999998653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0061 Score=63.88 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|.. |..++.-|... |..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 155 PLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEEc
Confidence 4688 99999999988 99999999987 8777664211 24677889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-.. ++.. ..+|+|++|++++
T Consensus 209 vG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 209 VGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred CCCcC---ccCH--HHcCCCCEEEEcc
Confidence 99433 3332 6789999888763
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=58.22 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=57.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCcee--cCCCcC-CHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTE--ENGTLG-DIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~~~--~d~t~~-d~~Ea-v~~ADIVILav 186 (583)
|+|.|||+|..|.++|+.|.+. |++|++-++..++..+. +.+.+... .+++-. .+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999998 99887766654443331 22233321 121111 13444 78899999999
Q ss_pred cchHHHHHHHHHHh
Q 007951 187 SDAAQADNYEKIFS 200 (583)
Q Consensus 187 pd~a~~~Vl~eI~~ 200 (583)
..+.+..++-.++.
T Consensus 75 ~~d~~N~i~~~la~ 88 (225)
T COG0569 75 GNDEVNSVLALLAL 88 (225)
T ss_pred CCCHHHHHHHHHHH
Confidence 99888877776553
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.014 Score=49.86 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..+++ ++++|+|.|.||.+++..|.+. +. ++.+.++ |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999886 43 5555433 99999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998755432 2234556788887754
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=54.04 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=44.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc-------CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||. |..|.++|..|... ++ ++++.++...+....+.+. +... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999987 54 6666555533333333221 1100 001245678899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99975
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=57.62 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +.. ..... ..+.+.++|+||.+
T Consensus 7 ~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~-~~~~~-~~~~l~~adlViaa 77 (202)
T PRK06718 7 DLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRW-KQKEF-EPSDIVDAFLVIAA 77 (202)
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEE-EecCC-ChhhcCCceEEEEc
Confidence 4789 9999999999999999999998 8887776554322222222333 221 00011 13457889999999
Q ss_pred ccchHHHHHHHHHH
Q 007951 186 ISDAAQADNYEKIF 199 (583)
Q Consensus 186 vpd~a~~~Vl~eI~ 199 (583)
|.+...-..+.+.+
T Consensus 78 T~d~elN~~i~~~a 91 (202)
T PRK06718 78 TNDPRVNEQVKEDL 91 (202)
T ss_pred CCCHHHHHHHHHHH
Confidence 99988876665444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=62.50 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=58.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCcee--cCCCc-CCHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTL-GDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~--~d~t~-~d~~Ea-v~~ADIVILav 186 (583)
|+|.|||+|.+|.++++.|++. |+++++..++. ...+.+.+ .|+.. .|.+. ....++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999988 88877665543 33444443 45422 11111 123344 78999999999
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCM-KPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~L-k~GaiL~~ 210 (583)
++......+......+ ....++..
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEEE
Confidence 9877665554433333 33344443
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=59.62 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=60.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILavpd~a 190 (583)
+||||||||.||..++..|.+.. ..++++...++......+.. ...... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999987530 00245444344433222221 122332 6788886 688999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~ 214 (583)
..+..+.+. +.|. +++.+-|-
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888887764 3454 55566553
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=61.41 Aligned_cols=84 Identities=10% Similarity=0.133 Sum_probs=55.2
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|.+|. .++..+... .+++++...+.+... .+... +... ..|.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466666654 156655444443321 12223 2222 568889885 5799999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 74 ~~~H~~~~~~a---l~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAA---LEAGKHVV 92 (346)
T ss_pred cHHHHHHHHHH---HHCCCeEE
Confidence 99998877654 34566544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.037 Score=48.70 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=61.0
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeccch
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISDA 189 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavpd~ 189 (583)
|.|+|+|.+|..+++.|++. +.++++.. .++...+.+.+.|+..-.+...+.. .-+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 77766544 4555678888888653222223322 2367899999999987
Q ss_pred HHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 190 AQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 190 a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
...-.+- .+....+...++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 6654333 343333334566655543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.019 Score=61.33 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceec--CCCc--CCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~--d~t~--~d~~Eav~~ADIVILa 185 (583)
+||+|||. |.+|..+++.|.+. .+++++ +..+..+.........+.... +-.+ .+.++.++++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999998854 134555 222222111111111221000 0001 2455666689999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++..++.. .|..|+|.++-
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888887643 57878877663
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=62.67 Aligned_cols=128 Identities=20% Similarity=0.093 Sum_probs=78.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEe--cc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLL--IS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~--~d~t~~d~~Eav~~ADIVILa--vp 187 (583)
-||.|||.|..|..-|+-...- |-+|.+.+.+..+....-...|... .-++...++++++++|+||-+ +|
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999877766543 7788888776544443333344331 112233478899999999975 55
Q ss_pred chHHHHHH-HHHHhcCCCCcEEEEe----cCchhhhhhcccccCC---CCccEEEeccCCCchhhHH
Q 007951 188 DAAQADNY-EKIFSCMKPNSILGLS----HGFLLGHLQSMGLDFP---KNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 188 d~a~~~Vl-~eI~~~Lk~GaiL~~a----~G~~i~~ie~~~i~~p---~dv~VI~v~PngPg~~vR~ 246 (583)
-...+.++ ++..+.||||++|+|+ .|.- +....+...=| .+--+--+-||+||.+-|.
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~-Et~~~TTh~~PtY~~~gvvhY~VaNmPgaVprT 308 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF-ETSHPTTHDDPTYEVDGVVHYGVANMPGAVPRT 308 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEEEcCCCce-eccccccCCCCceeecCEEEEecCCCCccccch
Confidence 55555544 5788899999998866 3321 00000000101 1212335679999998653
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=63.83 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcC---ce--ecCCC-cCCHhhhhccCCeEE
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---FT--EENGT-LGDIYETISGSDLVL 183 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G---~~--~~d~t-~~d~~Eav~~ADIVI 183 (583)
+++|.|||+|.+|.+.|..|.++ | .+|.+..|+.++ .+++...+ +. .-|-. .....+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 37899999999999999999988 6 689998887554 34443332 21 10100 123557899999999
Q ss_pred EeccchHHHHHHH
Q 007951 184 LLISDAAQADNYE 196 (583)
Q Consensus 184 Lavpd~a~~~Vl~ 196 (583)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=59.81 Aligned_cols=64 Identities=30% Similarity=0.308 Sum_probs=39.8
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH----HHHHH---cCc--eecCCCcCCHhhhhccCCeEE
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF----AEARA---AGF--TEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~----~~A~~---~G~--~~~d~t~~d~~Eav~~ADIVI 183 (583)
|+|||.|.||..+|..|... |+ +|++.+...+... +.... .+. .. ....+ .+.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCC-HHHhCCCCEEE
Confidence 68999999999999998876 65 7766655433211 11111 000 10 00234 45689999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.013 Score=61.27 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=56.8
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 35788 9999999997 999999999987 8777777652 1234566789999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+... .+. .+.+++|++|+|+
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDv 230 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDA 230 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEE
Confidence 996222 232 2457999998876
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.016 Score=61.52 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=55.2
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.++. .++..+.... .+++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999764 4455554320 14565544444433344555565321 1468899885 57999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEE
Q 007951 189 AAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL 208 (583)
..+.++..+. |+.|+-|
T Consensus 75 ~~H~~~~~~a---l~aGkhV 91 (344)
T PRK10206 75 DSHFEYAKRA---LEAGKNV 91 (344)
T ss_pred hHHHHHHHHH---HHcCCcE
Confidence 9998877654 3446533
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=61.57 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=54.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCc---CCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~---~d~~Eav~~ADIVI 183 (583)
+++ +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+.+.++|+||
T Consensus 123 ~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVI 195 (282)
T TIGR01809 123 LAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLV 195 (282)
T ss_pred cCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEE
Confidence 567 8999999999999999999988 86 6888888766666666554321000001 12235568899999
Q ss_pred EeccchH
Q 007951 184 LLISDAA 190 (583)
Q Consensus 184 Lavpd~a 190 (583)
.+||...
T Consensus 196 naTp~g~ 202 (282)
T TIGR01809 196 STVPADV 202 (282)
T ss_pred ECCCCCC
Confidence 9999754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.017 Score=63.70 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=67.8
Q ss_pred hcCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCe
Q 007951 108 FNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
|.= ++|+|||. |+.|.-+.++|++. |+ +|+..+... . .-.|+.. ..++.|+-...|+
T Consensus 5 ~~p-~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~-~-----~i~G~~~----~~sl~~lp~~~Dl 67 (447)
T TIGR02717 5 FNP-KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKA-G-----EILGVKA----YPSVLEIPDPVDL 67 (447)
T ss_pred cCC-CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCC-C-----ccCCccc----cCCHHHCCCCCCE
Confidence 444 89999999 88999999999988 76 453333221 1 2356664 5678887778899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+++++|++...+++++... ..-..+|++++||.
T Consensus 68 avi~vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 68 AVIVVPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred EEEecCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 9999999999999998654 34456788999985
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.063 Score=50.56 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=67.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~~ADIVILavp 187 (583)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... +..+....+.-+++|+|.-.-|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 789999999 888999999988 98864 56666677888888776421 2223334577899999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8777766667777665444444
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.027 Score=59.71 Aligned_cols=125 Identities=21% Similarity=0.186 Sum_probs=86.4
Q ss_pred cccccchhhhhhhhcccccceeeeccccccccc-hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~-~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
.+-|-++-+.|--+|-|-.|-++.| .... .--+.| |...|.|||-.|..-|+.||.. |..|+|..-+.
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~Dg----ikraTDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDP 247 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLDG----IKRATDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDP 247 (434)
T ss_pred eeccchhhhhhccccccchhhhhhh----hhhhhhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCc
Confidence 4556666666665666666644432 1111 123455 7788999999999999999977 87877764433
Q ss_pred cccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 151 SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 151 s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
-. .-.|.-.|+. +.+++|+++++||++-++--..+ +..+....||.++||.-..-|.
T Consensus 248 I~-ALQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 248 IC-ALQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred hH-HHHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 23 3344456888 57899999999999999876554 4456778899999987665554
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=56.84 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=76.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.||.|.|. |++|..+..+|++. |+.+++......-. .+-.|+.. ..++.|+-.. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68899996 88999999999987 77644344332000 12247664 5678887766 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhc-ccccCCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~-~~i~~p~dv~VI~v~PngPg~~ 243 (583)
....+++++... ..-..+|++++||.....++ ..+.-..++.++. ||+.|-.
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG--PNc~Gi~ 128 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG--PNCPGII 128 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC--CCCCccc
Confidence 999999988554 22345788999997542000 0011123555554 8887765
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.03 Score=58.82 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=58.1
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|. .|..++.-|... |..|.+..+. +.++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 156 DTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVVA 209 (285)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 9999999998 999999999887 7777776432 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++++|++|+|++
T Consensus 210 vG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 210 VGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred CCCccc---cc--HHHcCCCcEEEEcc
Confidence 953332 22 25689999988864
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.063 Score=56.75 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=43.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH----c----CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A----GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~----~----G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|.+|.++|..|... |+ ++.+.+...++....+.+ . .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999887 76 566665543332222221 1 1111 1123456899999
Q ss_pred EEEecc
Q 007951 182 VLLLIS 187 (583)
Q Consensus 182 VILavp 187 (583)
||++.-
T Consensus 77 vIitag 82 (315)
T PRK00066 77 VVITAG 82 (315)
T ss_pred EEEecC
Confidence 999643
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.025 Score=56.29 Aligned_cols=116 Identities=13% Similarity=0.219 Sum_probs=68.1
Q ss_pred ccccchhhhcCCCEEEEEccchhHHHHHHHH--HHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc
Q 007951 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~G~mG~A~A~nL--rdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.|.++...=+- .++.|||+|++|.|++.-- .+. |.+++...+.++...-.-. .++...+ ..++++.++
T Consensus 74 ff~~~Lg~~~~-tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~~--~d~le~~v~ 143 (211)
T COG2344 74 FFDDLLGQDKT-TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVYD--LDDLEKFVK 143 (211)
T ss_pred HHHHHhCCCcc-eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeeec--hHHHHHHHH
Confidence 34444333333 6899999999999997532 233 6777777776554222211 2233211 345566676
Q ss_pred --cCCeEEEeccchHHHHHHHHHHh-cCCCCcEEEEecCchhhhhhcccccCCCCccEEEec
Q 007951 178 --GSDLVLLLISDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236 (583)
Q Consensus 178 --~ADIVILavpd~a~~~Vl~eI~~-~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~ 236 (583)
+.|+.+|+||-....++.+.+.. .+| .+|-|+..- +..|+++.|.-+.
T Consensus 144 ~~dv~iaiLtVPa~~AQ~vad~Lv~aGVk--GIlNFtPv~---------l~~pe~V~V~~iD 194 (211)
T COG2344 144 KNDVEIAILTVPAEHAQEVADRLVKAGVK--GILNFTPVR---------LQVPEGVIVENID 194 (211)
T ss_pred hcCccEEEEEccHHHHHHHHHHHHHcCCc--eEEeccceE---------ecCCCCcEEEEee
Confidence 78999999997777777776433 232 255555321 2456776665443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.039 Score=62.21 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=64.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--C----C-----C--cCC-------
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD------- 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d----~-----t--~~d------- 171 (583)
.++.|||+|.+|...++.++.. |..|++.+++ ....+.++..|...- + + + ..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 6999999999999999999987 8877665554 445778887776520 0 0 0 001
Q ss_pred ---HhhhhccCCeEEEec--cchHHHH-HHHHHHhcCCCCcEEEEec
Q 007951 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 172 ---~~Eav~~ADIVILav--pd~a~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 335578899999987 2211223 3346778899999988763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.039 Score=52.70 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=57.7
Q ss_pred cccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCCHhhhhccC
Q 007951 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (583)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~~A 179 (583)
|+.. =.++| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+. .+.+ +.. ...... ++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l-~~l~~i~~-~~~~~~-~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEM-KELPYITW-KQKTFS-NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHH-HhccCcEE-EecccC-hhcCCCc
Confidence 4533 46889 9999999999999999999998 8887766332 12222 2222 221 111112 2346889
Q ss_pred CeEEEeccchHHHHHHHHHHh
Q 007951 180 DLVLLLISDAAQADNYEKIFS 200 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~ 200 (583)
|+||.+|.+...-..+.....
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887766665543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.019 Score=63.00 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=48.7
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHHH--------HcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--------~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|++|.+.+. .+....+ -.|.+|++.++..++ .+... ..+....-..+.|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e~-l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEER-LETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999999776 4542101 115677766554322 22111 11111000114577899999999
Q ss_pred EEEeccchHHHHHHH
Q 007951 182 VLLLISDAAQADNYE 196 (583)
Q Consensus 182 VILavpd~a~~~Vl~ 196 (583)
||.+++........+
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999766554443
|
linked to 3D####ucture |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.1 Score=49.05 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.0
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeccc
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavpd 188 (583)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++..-.....+ +.++++++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689995 99999999999999 9999888887654333 4444321222334 35678899999999984
|
... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.026 Score=68.30 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=52.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhc------C---CceEEEEecCCcccHHHHHHc-Cc--eecCCCcCCHhh---hh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK------S---DIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE---TI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g------~---G~~ViVg~r~~s~s~~~A~~~-G~--~~~d~t~~d~~E---av 176 (583)
++|+|||+|.+|..++..|.+. .+.. . +..|.|+++...+..+.+... ++ ...| +.+.++ ++
T Consensus 570 ~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~~~v 646 (1042)
T PLN02819 570 QNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLLKYV 646 (1042)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHHHhh
Confidence 8999999999999999999864 1000 0 112666655433333333333 42 1101 345444 44
Q ss_pred ccCCeEEEeccchHHHHHHHH
Q 007951 177 SGSDLVLLLISDAAQADNYEK 197 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~e 197 (583)
+++|+|++|+|+..+..+...
T Consensus 647 ~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHH
Confidence 689999999999988887764
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.017 Score=57.37 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd~ 189 (583)
++|+|||+|.+|.+++..+... . .|++++...+.++...... -.|+.. ....+..+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999998864321 1 2777655454433211111 123321 013456677654 99999999999
Q ss_pred HHHHHHHHHH
Q 007951 190 AQADNYEKIF 199 (583)
Q Consensus 190 a~~~Vl~eI~ 199 (583)
.+.++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.026 Score=60.61 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=61.9
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
..+++ ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 45788 99999998 89999999999743 043 6666666544444445443311 1346778999999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
.++...... ++. ...++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EID--PETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence 988743221 111 12346777777663
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.07 Score=54.48 Aligned_cols=65 Identities=28% Similarity=0.316 Sum_probs=41.8
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHH-------c-CceecCCCcCCHhhhhccCC
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~-------~-G~~~~d~t~~d~~Eav~~AD 180 (583)
|+|||. |.+|..++..|... | .++.+.+...++....+.+ . .... ....|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666665443322211111 1 1111 01345578999999
Q ss_pred eEEEec
Q 007951 181 LVLLLI 186 (583)
Q Consensus 181 IVILav 186 (583)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.046 Score=51.60 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.+
T Consensus 25 ~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 25 RLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999976 7888999988877 8887765432 12566789999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. +++ .+.+|||++|++.
T Consensus 79 tg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 79 SPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEc
Confidence 98652 233 3458999987754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.033 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=60.8
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc--CC----Hhhhhcc
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~--~d----~~Eav~~ 178 (583)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.+.+.-.......... ...+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 35889 999999987 7899999999887 8888776432211100000000 0011 12 6688999
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
||+||.+++..... +. .+.+|+|++|++++
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVG 156 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFA 156 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcC
Confidence 99999999965441 22 34578999999875
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.043 Score=48.49 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|.|||.|..|..=++.|.+. |.+|++..... ...+..+... -...++.+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 3678 9999999999999999999998 88887765542 1111222211 123346688999999999
Q ss_pred cchHHHHHHHH
Q 007951 187 SDAAQADNYEK 197 (583)
Q Consensus 187 pd~a~~~Vl~e 197 (583)
.+....+-+.+
T Consensus 69 ~d~~~n~~i~~ 79 (103)
T PF13241_consen 69 DDPELNEAIYA 79 (103)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 98776554443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.028 Score=58.89 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCH--hhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~--~Eav~~ADIVI 183 (583)
..+| +++.|+|.|=.+.|++..|.+. |. +|+|.+|..++..+.+...+-.......... .+...++|+||
T Consensus 123 ~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliI 195 (283)
T COG0169 123 DVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLI 195 (283)
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEE
Confidence 3456 8999999999999999999998 85 7899999877777777665411000001111 12222699999
Q ss_pred EeccchHHHHH----HHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADN----YEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~V----l~eI~~~Lk~GaiL~~a 211 (583)
.+||....... +. ...++++.++.|+
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 99998766532 12 3456677777655
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.11 Score=51.04 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.1
Q ss_pred EEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeccc
Q 007951 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (583)
Q Consensus 114 IgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIVILavpd 188 (583)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..+..|...-..... ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 8999888887533 334555677753211222 345689999999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.072 Score=51.47 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=51.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+..+.+++||+||.+
T Consensus 33 ~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVsa 86 (160)
T PF02882_consen 33 DLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVSA 86 (160)
T ss_dssp STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE-
T ss_pred CCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEeee
Confidence 4889 999999988 5999999999998 8777664332 12566788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... ++ ...+|+|++|+|+.
T Consensus 87 ~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 87 VGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp SSSTT----B---GGGS-TTEEEEE--
T ss_pred eccccc---cc--cccccCCcEEEecC
Confidence 985333 22 35689999888774
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.097 Score=55.78 Aligned_cols=115 Identities=11% Similarity=0.165 Sum_probs=79.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILav 186 (583)
.||-|-|. |.+|.-+++.+++. |-+|+.|..... .... ..|+.. ..++.|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 57888884 99999999999998 888888877543 2221 136664 5688888887 99999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhhh---hhcccccCCCCccEEEeccCCCchh
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~---ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
|+....+.+.|.... .-..+|+++.||.... ++. .+.-..++. .+=||+||-.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~-~~~~~~g~r--liGPNc~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKH-ALLSQNKTR--LIGPNCPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHH-HHhhcCCCE--EECCCCceEE
Confidence 999999888874431 1234788999997542 211 111013444 4459998866
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.046 Score=57.45 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=57.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 154 EIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCVG 207 (285)
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEEe
Confidence 5788 999999999 9999999999887 8877765321 12456788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+..... +. .+++|+|++|++++
T Consensus 208 vG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 208 VGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred cCCCCc---CC--HHHcCCCcEEEEee
Confidence 975443 22 24569999988874
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.088 Score=52.24 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC---Cc---------------ccHHHHHH----cC
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~---~s---------------~s~~~A~~----~G 161 (583)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.+++ .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 567788 9999999999999999999988 77 45555443 10 00000000 00
Q ss_pred -cee--cCCCc--CCHhhhhccCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEecCc
Q 007951 162 -FTE--ENGTL--GDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 162 -~~~--~d~t~--~d~~Eav~~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
... ..... .+..+.++++|+||-|+-+..... +++++...++...+++ .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 110 00001 123456788999999954434443 4556666665543444 5665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.07 Score=57.99 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.++|.|||+|.+|.++|+.|++. |++|++.++.. ..... .+... +..........+++|+||.+.+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSL-EALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCc-cccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCC
Confidence 38999999999999999999998 98876555432 22211 11110 0001123334478999999876554
Q ss_pred HHHHHHH
Q 007951 191 QADNYEK 197 (583)
Q Consensus 191 ~~~Vl~e 197 (583)
..+.+++
T Consensus 72 ~~~~l~~ 78 (418)
T PRK00683 72 EHPWVQA 78 (418)
T ss_pred CcHHHHH
Confidence 3444443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.17 Score=54.79 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=56.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHh----hhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~~~d~t~~d~~----Eav~~ADIVILa 185 (583)
++|.|||+|..|..+++.|.+. |+++++..+. ++..+...+. ++..-.+...+.. .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 7899999999999999999998 8887666554 3344444443 3321011122222 245789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+++...--....++..+.+..++.-
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~ 329 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIAL 329 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 9976543333334444444445443
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.15 Score=50.75 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=52.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+.+ +.+.+..+....+. .. .+.+.++|+||.+
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 3789 9999999999999999999998 888777655433223 33333233321111 12 3457899999999
Q ss_pred ccchHHH
Q 007951 186 ISDAAQA 192 (583)
Q Consensus 186 vpd~a~~ 192 (583)
+.|....
T Consensus 77 t~d~~ln 83 (205)
T TIGR01470 77 TDDEELN 83 (205)
T ss_pred CCCHHHH
Confidence 9987543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.14 Score=50.71 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~~---- 160 (583)
.+-|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....+.+.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 467788 9999999999999999999988 76 555554431 1111111111
Q ss_pred -Ccee--cCCCcC--CHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~--~d~t~~--d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+.. .+.... +..+.++++|+||.++........+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 001111 23457889999999986655555666543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.11 Score=55.64 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=49.1
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcCceec-----------CC---CcCCHhhhhcc
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-~~~A~~~G~~~~-----------d~---t~~d~~Eav~~ 178 (583)
|||+|+|.+|..+++.+... .+++++...+.+... ...|...|+... +. ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 68999999999999998754 156665445543321 134443332110 00 02467888899
Q ss_pred CCeEEEeccchHHHHHH
Q 007951 179 SDLVLLLISDAAQADNY 195 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl 195 (583)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987665433
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.084 Score=59.59 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=65.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------------cCCH-
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI- 172 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t-------------~~d~- 172 (583)
.+ .||.|||.|.+|..-++.++.. |.+|++. +.++...+.+++.|.... +.. ..+.
T Consensus 164 pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHH
Confidence 45 8999999999999999999887 8876554 445566889999987510 100 0010
Q ss_pred -------hhhhccCCeEEEeccchH--HHHHH-HHHHhcCCCCcEEEEe
Q 007951 173 -------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLS 211 (583)
Q Consensus 173 -------~Eav~~ADIVILavpd~a--~~~Vl-~eI~~~Lk~GaiL~~a 211 (583)
.+.++++|+||-++.-.. .+.++ ++....+|+|.+|++.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 122357999999886322 23443 7777889999988766
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.07 Score=55.92 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=57.3
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.+ ..|..++.-|... |..|.+..+. ..++.+.+++||+||.+
T Consensus 149 ~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~A 202 (279)
T PRK14178 149 SIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVSA 202 (279)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEEC
Confidence 5789 999999999 9999999999877 7777766532 12467888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-. .++. ...+|+|++|+|++
T Consensus 203 vgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 203 AGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCcc---cccC--HHHcCCCcEEEEee
Confidence 9733 2333 22369999998874
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.12 Score=59.37 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=54.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavp 187 (583)
..|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 4789999999999999999988 8887654 45566778888888643211122221 13678999999999
Q ss_pred chHHHH
Q 007951 188 DAAQAD 193 (583)
Q Consensus 188 d~a~~~ 193 (583)
|.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 976653
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.053 Score=56.70 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=51.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCc---ccHHHHHHcCceecC-CCcCCH------hhhh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGDI------YETI 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s---~s~~~A~~~G~~~~d-~t~~d~------~Eav 176 (583)
+++ +++.|||.|-.+.|++..|... |. ++.|.+|..+ +..+.+...+..... -...+. .+.+
T Consensus 122 ~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (288)
T PRK12749 122 IKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEAL 194 (288)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhc
Confidence 567 8999999999999999999887 76 7888888742 444444433210000 001122 2356
Q ss_pred ccCCeEEEeccchHH
Q 007951 177 SGSDLVLLLISDAAQ 191 (583)
Q Consensus 177 ~~ADIVILavpd~a~ 191 (583)
.++|+||.+||....
T Consensus 195 ~~aDivINaTp~Gm~ 209 (288)
T PRK12749 195 ASADILTNGTKVGMK 209 (288)
T ss_pred ccCCEEEECCCCCCC
Confidence 789999999997654
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.13 Score=54.15 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=77.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.+|.|.| .|.+|..+-.+|+.. |.+++++...+ +. ...-.|+.. ..++.|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6789999 689999999999988 87766665543 11 112357764 5677777665 6999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccc--cCCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGL--DFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i--~~p~dv~VI~v~PngPg~~ 243 (583)
....+++++... ..-..+|++++||.... +.... .-..++.++. ||+.|-.
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~~-~~~l~~~a~~~girilG--PNc~Gii 126 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVHD-MLKVKRYMEESGTRLIG--PNCPGII 126 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHcCCEEEC--CCCceEE
Confidence 999999988554 22345788999996431 11001 1122445544 8888776
|
ATP citrate lyases appear to form an outgroup. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.089 Score=52.98 Aligned_cols=79 Identities=16% Similarity=0.013 Sum_probs=48.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----------ccHHHHHHcCceecC-C-CcCCHh
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----------~s~~~A~~~G~~~~d-~-t~~d~~ 173 (583)
..++| ++|+|.|+|+.|...|+-|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 45788 9999999999999999999988 886555445444 334444433322100 0 001112
Q ss_pred hh-hccCCeEEEeccchHH
Q 007951 174 ET-ISGSDLVLLLISDAAQ 191 (583)
Q Consensus 174 Ea-v~~ADIVILavpd~a~ 191 (583)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888776533
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.098 Score=55.98 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=49.9
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCC-c-eEEEEecCCcccHHHHHH-c--CceecCCCcCC---HhhhhccCCeEEEe
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G-~-~ViVg~r~~s~s~~~A~~-~--G~~~~d~t~~d---~~Eav~~ADIVILa 185 (583)
|.|||.|.+|..++..|.+. + . +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875543344332 1 22110000223 45688999999999
Q ss_pred ccchHHHHHHHH
Q 007951 186 ISDAAQADNYEK 197 (583)
Q Consensus 186 vpd~a~~~Vl~e 197 (583)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666653
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.094 Score=55.50 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceec-CCC-cCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEE-NGT-LGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~----~~G~~~~-d~t-~~d~~Eav~~ADIVI 183 (583)
+||+|||.|.+|.++|..|... |+ ++++.+...++....+. ...+... .-. ..+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999999877 65 56555544332222222 2211100 001 24555 489999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 943
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.06 Score=57.31 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=46.0
Q ss_pred hhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHc-CceecCCCc-CCHhhhhccC
Q 007951 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAA-GFTEENGTL-GDIYETISGS 179 (583)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~-G~~~~d~t~-~d~~Eav~~A 179 (583)
|.++|. +||+|||. |.+|.+++..|... +...++++.+.... ..++..... .+...+.+. .+..++++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCC
Confidence 467788 99999999 99999999999865 11235555554211 111211101 112111111 2226789999
Q ss_pred CeEEEecc
Q 007951 180 DLVLLLIS 187 (583)
Q Consensus 180 DIVILavp 187 (583)
|+||++.-
T Consensus 78 DvVVitaG 85 (321)
T PTZ00325 78 DLVLICAG 85 (321)
T ss_pred CEEEECCC
Confidence 99998654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.18 Score=57.04 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=52.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeccc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISD 188 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavpd 188 (583)
.|-|+|+|.+|..+++.|++. |+++++-+ .+++..+.+++.|...-.+...+.+ .-++++|.|++++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 688999999999999999998 88876654 4555677778888643211122321 125689999999998
Q ss_pred hHHH
Q 007951 189 AAQA 192 (583)
Q Consensus 189 ~a~~ 192 (583)
+...
T Consensus 492 ~~~~ 495 (558)
T PRK10669 492 GYEA 495 (558)
T ss_pred hHHH
Confidence 7554
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.32 Score=51.87 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCc------ccHHHHHHc-----CceecCCCcC
Q 007951 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (583)
Q Consensus 110 gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s------~s~~~A~~~-----G~~~~d~t~~ 170 (583)
...||+|||. |.+|.++|..|... ++ ++++.+.... ..++..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 3479999998 99999999988765 33 4544443211 122222211 1111 23
Q ss_pred CHhhhhccCCeEEEecc
Q 007951 171 DIYETISGSDLVLLLIS 187 (583)
Q Consensus 171 d~~Eav~~ADIVILavp 187 (583)
+..+.+++||+||++--
T Consensus 73 ~~y~~~~daDiVVitaG 89 (326)
T PRK05442 73 DPNVAFKDADVALLVGA 89 (326)
T ss_pred ChHHHhCCCCEEEEeCC
Confidence 45578899999999643
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.25 Score=53.30 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=41.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH----HcCceecCCCc---CCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----AAGFTEENGTL---GDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~----~~G~~~~d~t~---~d~~Eav~~ADIV 182 (583)
+||+|||.|.+|.++|..|... ++ ++++.+...++....+. ...+.. ...+ .+. +.+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~-~~~i~~~~dy-~~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLP-RTKILASTDY-AVTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCC-CCEEEeCCCH-HHhCCCCEE
Confidence 5999999999999999999876 65 55555543322222222 111110 0001 244 448999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|++.
T Consensus 110 VitA 113 (350)
T PLN02602 110 IVTA 113 (350)
T ss_pred EECC
Confidence 9973
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.12 Score=54.90 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcc------cHHHHHHc-----CceecCCCcCCH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s~------s~~~A~~~-----G~~~~d~t~~d~ 172 (583)
+||+|||. |.+|.++|..|... |+ ++++.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999999876 54 45554442211 12222111 1111 1344
Q ss_pred hhhhccCCeEEEec
Q 007951 173 YETISGSDLVLLLI 186 (583)
Q Consensus 173 ~Eav~~ADIVILav 186 (583)
.+.+++||+||++-
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 57889999999964
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=54.10 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=57.0
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.+. .|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 161 ~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 161 DIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 9999999998 999999999887 7777665421 23567788999999997
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+--.. .+. ...+|+|++|+|++
T Consensus 215 vG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 215 TGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred cCCcc---ccC--HHHcCCCcEEEEec
Confidence 66332 222 23689999988863
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.35 Score=45.28 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhH-hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvL-sG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
+++.. +.++++.++.++..+|.. ++. ..+..-.+||..+++ |+.+.+++....+.+.++|+++++|++.-.--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~---i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFE---IDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEE---eCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 35555 788999999999999985 222 233344589999986 99999999999999999999999988754444
Q ss_pred HHHHHHHHHHHhcH
Q 007951 342 ITGIISKIISTQGM 355 (583)
Q Consensus 342 l~Glia~li~e~G~ 355 (583)
+.+ ..+-+.+.|.
T Consensus 78 i~~-t~~n~~~~g~ 90 (132)
T PF10728_consen 78 IRE-TLENILQLGP 90 (132)
T ss_dssp HHH-HHHHHHHS-H
T ss_pred HHH-HHHHHHhcCc
Confidence 433 3334444444
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.12 Score=54.17 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+... + +.+..+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs---~----------------T~~l~~~~~~ADIvV~A 207 (281)
T PRK14183 154 DVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHI---F----------------TKDLKAHTKKADIVIVG 207 (281)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999999 8999999999887 777765532 1 12456788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+++
T Consensus 208 vGkp~~---i~--~~~vk~gavvIDv 228 (281)
T PRK14183 208 VGKPNL---IT--EDMVKEGAIVIDI 228 (281)
T ss_pred cCcccc---cC--HHHcCCCcEEEEe
Confidence 985433 32 3567899998886
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=54.12 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=49.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCC---cccHHHHHHc---C----ceecCCCcC---CHh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G----FTEENGTLG---DIY 173 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~---s~s~~~A~~~---G----~~~~d~t~~---d~~ 173 (583)
+++ +++.|+|.|-+|.+++..|.+. |.+ |.+.+|.. ++..+.+.+. + +...+ .. +..
T Consensus 124 ~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d--~~~~~~~~ 194 (289)
T PRK12548 124 VKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYD--LNDTEKLK 194 (289)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEec--hhhhhHHH
Confidence 567 8999999999999999999988 885 88888764 3333333322 1 11000 11 123
Q ss_pred hhhccCCeEEEeccchHH
Q 007951 174 ETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~ 191 (583)
+.++++|+||.+||....
T Consensus 195 ~~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 195 AEIASSDILVNATLVGMK 212 (289)
T ss_pred hhhccCCEEEEeCCCCCC
Confidence 455678999999987643
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.21 Score=52.57 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=41.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHH-------HcCc--eecCCCcCCHhhhhc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~--s~s~~~A~-------~~G~--~~~d~t~~d~~Eav~ 177 (583)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999887 65 466656532 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999875
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.12 Score=56.81 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=52.9
Q ss_pred cccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHcCceecCCCcCCHhhhh
Q 007951 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s----~~~A~~~G~~~~d~t~~d~~Eav 176 (583)
|....+.+.+ ++|+|+|+|..|.++|+-|++. |+.|.+.++..... .+...+.|+.... -....+.+
T Consensus 5 ~~~~~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~ 75 (458)
T PRK01710 5 FNEFKKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKL 75 (458)
T ss_pred HHHHhhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHh
Confidence 5545577888 9999999999999999999998 99887766543211 1335566875311 11224556
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
.++|+||+.
T Consensus 76 ~~~dlVV~S 84 (458)
T PRK01710 76 DGFDVIFKT 84 (458)
T ss_pred ccCCEEEEC
Confidence 789999885
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.14 Score=56.37 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=49.5
Q ss_pred hhhhcCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
++.+++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+...+.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 79999998 99987766543332333445677641 122345567899988
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 74
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.22 Score=57.40 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=55.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavp 187 (583)
+.|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ .-+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 5789999999999999999998 8887654 55566677788888753211122321 23568999999999
Q ss_pred chHHHHH
Q 007951 188 DAAQADN 194 (583)
Q Consensus 188 d~a~~~V 194 (583)
|......
T Consensus 474 d~~~n~~ 480 (621)
T PRK03562 474 DPQTSLQ 480 (621)
T ss_pred CHHHHHH
Confidence 8766543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.055 Score=51.69 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=61.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC------------------
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------------ 167 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~------------------ 167 (583)
.-+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+...-.-
T Consensus 16 ~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (168)
T PF01262_consen 16 GGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE 87 (168)
T ss_dssp TEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH
T ss_pred CCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhhH
Confidence 33444 7999999999999988888876 9987766554 33344444444421000
Q ss_pred ----CcCCHhhhhccCCeEEE--eccchHHHHHHH-HHHhcCCCCcEEEEec
Q 007951 168 ----TLGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 168 ----t~~d~~Eav~~ADIVIL--avpd~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
......+.++.+|+||. ..|+...+.++. +-...|++|.+|+|.+
T Consensus 88 ~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 88 HPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 00124467889999996 345666666664 5677899999999873
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.2 Score=53.97 Aligned_cols=86 Identities=12% Similarity=0.052 Sum_probs=60.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc---
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp--- 187 (583)
.+|||||+ .+|..++..+++. . .+++++.. ++..++..+.|.+.|+.. ..+.+|++.+.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999875 0 03555433 444456667888888763 6789999988888888774
Q ss_pred -chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 -DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 -d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45776666543 45666554
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.19 Score=53.71 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hhh-hcCCceEEEEecCC----------ccc-HHHHHHcCceec-C--CCcCCHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKVGLRKG----------SRS-FAEARAAGFTEE-N--GTLGDIY 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~~-~g~G~~ViVg~r~~----------s~s-~~~A~~~G~~~~-d--~t~~d~~ 173 (583)
.+|+|||+|.||..+++.|++. +.+ .|.+++++...+.+ ... .+.+.+.|.... . ....+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998764 110 12234543222211 111 122223332110 0 0123677
Q ss_pred hhh--ccCCeEEEeccchHHH-HH-HHHHHhcCCCCcEEEE
Q 007951 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (583)
Q Consensus 174 Eav--~~ADIVILavpd~a~~-~V-l~eI~~~Lk~GaiL~~ 210 (583)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986552 22 2334555667775543
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.15 Score=53.61 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 152 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIsA 205 (287)
T PRK14173 152 PLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVVA 205 (287)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999976 7899999999877 7777655321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 206 vGkp~~---i~--~~~vk~GavVIDV 226 (287)
T PRK14173 206 VGRPHL---IT--PEMVRPGAVVVDV 226 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985433 32 4567999998886
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.15 Score=53.87 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 155 DIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVAA 208 (297)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777665321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|+.
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 209 AGRPNL---IG--AEMVKPGAVVVDVG 230 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985432 32 35689999988863
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.2 Score=52.43 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCcee-cCCC--cCCHhhhhccCCeEEEec
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENGT--LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~-~d~t--~~d~~Eav~~ADIVILav 186 (583)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+ +.... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 64 566655544332222221 11000 0000 112246889999999986
Q ss_pred c
Q 007951 187 S 187 (583)
Q Consensus 187 p 187 (583)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 5
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.25 Score=52.67 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=41.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccHHHHHH--cCceec-CC--CcCCHhhhh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGFTEE-NG--TLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~--s~s~~~A~~--~G~~~~-d~--t~~d~~Eav 176 (583)
.||+|||. |.+|.++|..|... ++ ++++.+... ++....+.. +..... .. ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999876 54 455554432 112222221 111000 00 013456788
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
++||+||++-
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999964
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.24 Score=44.07 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--HcCceecCCCcCCHhhhhccCCeEEEeccchHHHH-HHHH
Q 007951 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEK 197 (583)
Q Consensus 121 ~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~-Vl~e 197 (583)
+-+..++..|++. |.+|.+.+..-........ ..++.. +.+..++++++|+||++++-....+ -+++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~ 86 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDEEEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWEE 86 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHHHHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccChHHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHHH
Confidence 4566778888887 9998776654332222221 246664 5678999999999999999888877 4667
Q ss_pred HHhcCCCCcEEEEecCc
Q 007951 198 IFSCMKPNSILGLSHGF 214 (583)
Q Consensus 198 I~~~Lk~GaiL~~a~G~ 214 (583)
+...++++.+|+|.-|+
T Consensus 87 ~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 87 IAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHSCSSEEEEESSST
T ss_pred HHHhcCCCCEEEECccc
Confidence 88888888899998765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.18 Score=52.92 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 155 DIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5789 999999976 7899999999887 7777665421 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 209 vGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 209 IGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred CCCcCc---cC--HHHcCCCcEEEEe
Confidence 985443 22 3457899998887
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.19 Score=52.91 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=57.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. |..|.+.... +.++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIsA 209 (284)
T PRK14177 156 DVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVGA 209 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5788 999999976 7899999999987 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 210 vGk~~~---i~--~~~ik~gavVIDv 230 (284)
T PRK14177 210 VGKPEF---IK--ADWISEGAVLLDA 230 (284)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3567999998886
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.19 Score=52.87 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=57.3
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 153 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 206 (282)
T PRK14169 153 DVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVVA 206 (282)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999976 7899999999887 7777665321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|+.
T Consensus 207 vG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 207 VGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred cCCcCc---cC--HHHcCCCcEEEEee
Confidence 985443 22 34679999988863
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.18 Score=52.97 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 154 QIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVVA 207 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 5789 999999977 7899999999877 7777665321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 208 vG~~~~---i~--~~~vk~GavVIDv 228 (284)
T PRK14170 208 TGLAKF---VK--KDYIKPGAIVIDV 228 (284)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 3567899998886
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.18 Score=53.47 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=57.4
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.++++.+++||+||.+
T Consensus 164 ~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~A 217 (299)
T PLN02516 164 PIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIAA 217 (299)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5788 999999977 7899999999887 7777765321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-. .++. .+++|+|++|+++.
T Consensus 218 vGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 218 AGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred CCCc---CccC--HHHcCCCCEEEEee
Confidence 9753 2333 35689999988763
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.15 Score=51.68 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=28.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi 144 (583)
+.+++ ++|+|.|+|++|..+++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 45688 9999999999999999999988 88876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.44 Score=50.59 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=42.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecC--CcccHHHHHHcC-ceecCC-CcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~--~s~s~~~A~~~G-~~~~d~-t~~d~~Eav~~ADIVIL 184 (583)
+||+|||. |++|.++|..|... ++ ++++.+.. ....++...... ....+. ...++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999876 64 45444332 122233322211 111000 01223578999999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 643
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.2 Score=52.65 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=57.9
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.|.| +++.|||-+ ..|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 45788 999999988 5699999999987 8877765432 2356677899999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++--.... . .+.+|+|++|+|+
T Consensus 206 AvG~p~~i---~--~d~vk~gavVIDV 227 (283)
T COG0190 206 AVGKPHFI---K--ADMVKPGAVVIDV 227 (283)
T ss_pred ecCCcccc---c--cccccCCCEEEec
Confidence 98754332 2 5678999999887
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.2 Score=53.93 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.6
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..+++ ++|.|||.|-||.-.+++|++. |+ ++++.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34778 9999999999999999999998 86 68888887421 111100 0011134468999999
Q ss_pred ec
Q 007951 185 LI 186 (583)
Q Consensus 185 av 186 (583)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.4 Score=51.35 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~---------------------s~s~---~~A~~ 159 (583)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.+++. ++.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999988 76 555554431 0111 01111
Q ss_pred --cCceec----CCCcCCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 --~G~~~~----d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.++... +.+..+.+++++++|+||.++-+....-++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122110 1111235678899999999997666555666654
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.23 Score=45.49 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
++|.|||+|..|..++++|..+ |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999998 76 5555543
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.29 Score=52.11 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecCCcccHHHHHHcCcee------cCC-CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~------~d~-t~~d~~Eav~~ADIV 182 (583)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.. .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002366665553221111111111110 000 024556889999999
Q ss_pred EEec
Q 007951 183 LLLI 186 (583)
Q Consensus 183 ILav 186 (583)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9863
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.24 Score=52.04 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=56.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... +.++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIsA 208 (282)
T PRK14180 155 KTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIVA 208 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEEc
Confidence 5889 999999976 7899999999887 7777665321 23566778999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 209 vGkp~~---i~--~~~vk~gavVIDv 229 (282)
T PRK14180 209 VGKPNF---IT--ADMVKEGAVVIDV 229 (282)
T ss_pred cCCcCc---CC--HHHcCCCcEEEEe
Confidence 985443 22 3557899998886
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.22 Score=55.28 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=50.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.+ ++|.|+|+|-.|.++++-|++. |.+|.+.++......+...+.|+.... -....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45667 8999999999999999999998 988777665433322333456775410 01223456789999874
Q ss_pred --ccch
Q 007951 186 --ISDA 189 (583)
Q Consensus 186 --vpd~ 189 (583)
+|+.
T Consensus 82 pgi~~~ 87 (473)
T PRK00141 82 PGWRPD 87 (473)
T ss_pred CCCCCC
Confidence 4543
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.25 Score=52.09 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999887 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. ++. .+++|+|++|+|+
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDv 230 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDV 230 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEe
Confidence 98432 232 3567999998886
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.25 Score=52.00 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|... +..|.+.... ..++.+.+++||+||.+
T Consensus 155 ~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~A 208 (284)
T PRK14190 155 DISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIVA 208 (284)
T ss_pred CCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4789 999999966 7899999999877 7777665321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-.. ++. .+++|+|++|+|++
T Consensus 209 vG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 209 VGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred cCCCC---cCC--HHHcCCCCEEEEee
Confidence 97543 232 34578999998873
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.19 Score=53.08 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=41.9
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCccc----HHHHHHcCceec-C--CCcCCHhhhhccCCeEE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS----FAEARAAGFTEE-N--GTLGDIYETISGSDLVL 183 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s----~~~A~~~G~~~~-d--~t~~d~~Eav~~ADIVI 183 (583)
||+|||.|.+|.++|..|... ++ ++++.+...++. .+.....-+... + -+..+ .+.+++||+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 699999999999999999877 65 555555433322 233222211100 0 01123 46789999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.26 Score=51.87 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|... +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIsA 207 (282)
T PRK14166 154 DLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIVA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 7899999999877 7777655331 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+++|+|++|+|+
T Consensus 208 vGkp~~---i~--~~~vk~GavVIDv 228 (282)
T PRK14166 208 AGCVNL---LR--SDMVKEGVIVVDV 228 (282)
T ss_pred CCCcCc---cC--HHHcCCCCEEEEe
Confidence 985433 22 3467899998886
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.49 Score=50.48 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=58.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCceecCCCcC-CHh----hhh--ccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~~d~t~~-d~~----Eav--~~ADIVI 183 (583)
.++.|+|.|.+|...++.++.. |...++..+.++...+.|++ .|...-..... +.. +.. ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 3799999999999988888877 76444555666677889988 44432000001 111 222 3589999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-|+- ....+.+....+++|-.|++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666677777665543
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.27 Score=51.96 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 157 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVsA 210 (294)
T PRK14187 157 NLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVAA 210 (294)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999977 7899999999887 7777655321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. ..++|+|++|+|+
T Consensus 211 vGkp~~---i~--~~~ik~gaiVIDV 231 (294)
T PRK14187 211 VGIPNF---VK--YSWIKKGAIVIDV 231 (294)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEe
Confidence 985443 22 3457899998886
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.32 Score=51.18 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=56.1
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~A 207 (282)
T PRK14182 154 DPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVAA 207 (282)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEe
Confidence 4789 999999977 7899999999877 7777664321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-.. ++. .+++|+|++|+|+
T Consensus 208 vGk~~---~i~--~~~ik~gaiVIDv 228 (282)
T PRK14182 208 IGKAE---LVK--GAWVKEGAVVIDV 228 (282)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEe
Confidence 98432 333 3567999998886
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.28 Score=52.30 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=39.3
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCCcccHHHHHHcCceec-----CC--CcCCHhhhhc
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~s~s~~~A~~~G~~~~-----d~--t~~d~~Eav~ 177 (583)
+|+|||. |.+|.+++..|... ++ ++++.+.........++...+... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 43 355554422211111111111100 00 0124467889
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+||++-
T Consensus 75 ~aDiVVitA 83 (324)
T TIGR01758 75 DVDVAILVG 83 (324)
T ss_pred CCCEEEEcC
Confidence 999999964
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.26 Score=53.42 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++|||||.+
T Consensus 228 ~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIsA 281 (364)
T PLN02616 228 EIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIISA 281 (364)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4678 999999966 7899999999887 7777665321 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 282 vGkp~~---i~--~d~vK~GAvVIDV 302 (364)
T PLN02616 282 VGQPNM---VR--GSWIKPGAVVIDV 302 (364)
T ss_pred CCCcCc---CC--HHHcCCCCEEEec
Confidence 985433 22 3567999998886
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.22 Score=52.09 Aligned_cols=76 Identities=21% Similarity=0.096 Sum_probs=51.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecC--CCcCC---HhhhhccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEEN--GTLGD---IYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d--~t~~d---~~Eav~~ADI 181 (583)
+++ +++.|||.|-.|.|++..|.+. |. ++.+.+|..++..+.+......... ....+ ..+.+.++|+
T Consensus 125 ~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~di 197 (283)
T PRK14027 125 AKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADG 197 (283)
T ss_pred cCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCE
Confidence 556 8999999999999999999987 86 6778888766655555442100000 00112 2335567899
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
||.+||...
T Consensus 198 vINaTp~Gm 206 (283)
T PRK14027 198 VVNATPMGM 206 (283)
T ss_pred EEEcCCCCC
Confidence 999998543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.59 Score=49.68 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=41.1
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHHHcC-ceecCCCcC-CHhhhhccCCeEEEe
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~--s~s~~~A~~~G-~~~~d~t~~-d~~Eav~~ADIVILa 185 (583)
||+|||. |.+|.++|..|... ++ ++++.+... ...++...... ......+.. +..+.+++||+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 6999999 99999999999876 55 555554332 12222222111 011000001 236789999999997
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
.-
T Consensus 75 aG 76 (312)
T TIGR01772 75 AG 76 (312)
T ss_pred CC
Confidence 54
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.37 Score=52.50 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH----HHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~----~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+++ |+|.|||.|.+|.++|..|.+. |++|++.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999998 999887766532222 222334554210 111234557799999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.33 Score=51.14 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHH--hhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrd--sl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| |++.|||-+ ..|..++.-|.. . +..|.+.... +.++.+.+++||+||
T Consensus 155 ~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIvV 208 (284)
T PRK14193 155 ELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADIIV 208 (284)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEEE
Confidence 4788 999999966 789999999976 4 5566655321 235778899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.++.-... +. ..++|+|++|+|+
T Consensus 209 ~AvGkp~~---i~--~~~ik~GavVIDv 231 (284)
T PRK14193 209 AAAGVAHL---VT--ADMVKPGAAVLDV 231 (284)
T ss_pred EecCCcCc---cC--HHHcCCCCEEEEc
Confidence 99985432 32 3568999998886
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.61 Score=46.11 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 567788 9999999999999999999988 76 344443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.1 Score=49.98 Aligned_cols=74 Identities=16% Similarity=0.038 Sum_probs=41.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhc--CCc--eEEEEecCCcccHHHHHH--cCc-eecCC-C-cCCHhhhhccCCe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDI--VVKVGLRKGSRSFAEARA--AGF-TEENG-T-LGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g--~G~--~ViVg~r~~s~s~~~A~~--~G~-~~~d~-t-~~d~~Eav~~ADI 181 (583)
-||+|||. |++|.++|..|... .=+| .++ ++++.+...++....+.+ ++. ..... . ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 99999999988753 0011 022 454444443333322221 111 00000 0 1244578899999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||+.-
T Consensus 180 VVitA 184 (444)
T PLN00112 180 ALLIG 184 (444)
T ss_pred EEECC
Confidence 99964
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.3 Score=52.72 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=55.7
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++|||||.+
T Consensus 211 ~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIsA 264 (345)
T PLN02897 211 EIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIAA 264 (345)
T ss_pred CCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4788 999999976 6799999988877 7776654321 23567788999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 265 vGkp~~---v~--~d~vk~GavVIDV 285 (345)
T PLN02897 265 AGIPNL---VR--GSWLKPGAVVIDV 285 (345)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEc
Confidence 985443 22 3557999999886
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.34 Score=51.59 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=39.7
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccH----HHHHHc-----CceecCCCcCCHh
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~--s~s~----~~A~~~-----G~~~~d~t~~d~~ 173 (583)
||+|||. |.+|.+++..|... ++ ++++.+... +... +..... +... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999875 43 355544433 2111 111110 1111 13456
Q ss_pred hhhccCCeEEEec
Q 007951 174 ETISGSDLVLLLI 186 (583)
Q Consensus 174 Eav~~ADIVILav 186 (583)
+.+++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999863
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.33 Score=53.54 Aligned_cols=69 Identities=28% Similarity=0.187 Sum_probs=47.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+...++|+||
T Consensus 14 ~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~Vv 83 (480)
T PRK01438 14 WQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLVV 83 (480)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEEE
Confidence 567 8999999999999999999988 998877664432 11234556687541 112122345789999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
+++
T Consensus 84 ~s~ 86 (480)
T PRK01438 84 TSP 86 (480)
T ss_pred ECC
Confidence 865
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.49 Score=47.47 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ ++|.|||+|..|..++++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.24 Score=54.80 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=43.0
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHHH--------HHcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrdsl~~~g~G~~ViVg~r~~s~s~~~A--------~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.+.+. .+... ..-.+.+|++.+. ++...+.+ ...+....-..+.|..+++++||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDi-d~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDI-DPERLEESEIVARKLAESLGASAKITATTDRREALQGADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECC-CHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence 79999999999977665 66422 0011446655544 33323211 112211000114567899999999
Q ss_pred EEEeccch
Q 007951 182 VLLLISDA 189 (583)
Q Consensus 182 VILavpd~ 189 (583)
||.++-..
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99987653
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.2 Score=46.86 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHhh--hhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~~E--av~~ADIVIL 184 (583)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++..+.+++.|...-+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 57 8999999999999999998887 8877666553 3456778888887531111111111 2245799999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.... .+.+....+++|..++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 445555667776655433
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.34 Score=51.23 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=54.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.+.. .+..|.+.... ..++.+.+++||+||.+
T Consensus 156 ~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 156 ETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIAA 213 (295)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4788 999999976 7899999888762100 05566554321 23567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-. .++. ..++|+|++|+|++
T Consensus 214 vg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 214 IGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred cCcc---CccC--HHHcCCCCEEEEee
Confidence 9644 2333 23469999988874
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.79 Score=46.17 Aligned_cols=84 Identities=18% Similarity=0.044 Sum_probs=56.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
=.|+| +++.|||.|..|.-=+..|.+. |-+|+|....- ++......+.++...+ ...+..+.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 34788 9999999999999999999988 88777765543 3333444444422111 123444444 4999999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
+|.|....+-+.+.
T Consensus 79 At~d~~ln~~i~~~ 92 (210)
T COG1648 79 ATDDEELNERIAKA 92 (210)
T ss_pred eCCCHHHHHHHHHH
Confidence 99998776544433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.67 Score=45.84 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|++ ++|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999988 77 444443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.35 Score=53.28 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=50.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhh----hhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~----~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.+|||||+|.+|..++..|.+..+ ..|.++++.. ..++..+ .......+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 1122344332 2332211 1100011111 1457788885 5799999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++++.... .+-+...|+.|+-|+
T Consensus 79 ~tg~~~~~--~~~~~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPA--RELILKALEAGKHVV 101 (426)
T ss_pred CCCCchHH--HHHHHHHHHCCCeEE
Confidence 98764221 222335566777554
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.65 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 578888 9999999999999999999988
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.82 Score=49.04 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=55.3
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC---------------------cccHHHHHH---
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~---------------------s~s~~~A~~--- 159 (583)
.+.|+. .+|.|||+|-+|..+|++|..+ |+ ++.+.++.. .+....+..
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 567788 9999999999999999999988 76 555555431 111111111
Q ss_pred --cCcee--c--CCCcCCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 --AGFTE--E--NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 --~G~~~--~--d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
..+.. . +-+..+..+.++++|+||.++-......++.++.
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 11110 0 0011124567889999999988776666666654
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.8 Score=49.86 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=90.9
Q ss_pred CEEEEEcc-chhHHHHHHHHH-HhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCCH-h-hhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLr-dsl~~~g~G~~---ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~-Eav~~ADIVIL 184 (583)
++|||||+ |..|..+.+.|. +. .+. ++..... ++..+- ..|......+.+. . +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 57999997 999999999888 44 442 2222111 111111 1111000012222 1 35678999999
Q ss_pred eccchHHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
+.+.....++.+..+ +.| .+|+|.++.- ..-+|++.| -|---...+..... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa~---------Rmd~dVPLV--VPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASSL---------RMKDDAVII--LDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChhh---------hcCCCCCEE--eCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666666554 468 6788887642 112345544 35333333322111 24533
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (583)
Q Consensus 263 iAv~qd~sgeale~a~-ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~ 324 (583)
|+ +++++--.+-.++ .|.+..|-.+++-||+.. +||.+...|+-+.+..
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt 178 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQM 178 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHH
Confidence 23 3444544444333 455556666677665544 6788877776666544
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.83 Score=47.94 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---------cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---------~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
++|+|||.|.+-.+...-.+.. +.+.. +.+.+.++...+.+++ .++........+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755444333 11323 4566666655555532 11111000011222235688999
Q ss_pred EEeccch----HHHHHHHHHHhcCCCCcEEE--EecCch
Q 007951 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (583)
Q Consensus 183 ILavpd~----a~~~Vl~eI~~~Lk~GaiL~--~a~G~~ 215 (583)
+++.-.. .-.++++.|.++|++|+.|+ ..+|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9987665 44579999999999999876 667764
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.95 Score=43.27 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.3
Q ss_pred cCCCEEEEEc--cchhHHHHHHHHHHhhhhhcCCceEEEEecCC----c--ccH----HHHHHcCc--eecCCCcCCHhh
Q 007951 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (583)
Q Consensus 109 ~gikkIgIIG--~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s--~s~----~~A~~~G~--~~~d~t~~d~~E 174 (583)
+| +||++|| .+++..|++..+..- |.++.+....+ . .-. +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999887 88866655443 1 122 22333443 32 468899
Q ss_pred hhccCCeEEEeccc
Q 007951 175 TISGSDLVLLLISD 188 (583)
Q Consensus 175 av~~ADIVILavpd 188 (583)
+++++|+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999886655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.45 Score=53.11 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 45577 9999999999999999988888 9888776543 3334445666775311 11234567789998885
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.67 Score=50.00 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=57.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-cCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-~ADIVILa 185 (583)
-.| ++|+|+|.|-.|+--.+-.+.. |.+|+...+. ++..+.|++.|.... +....+..+.++ .+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999997777766666666 8887665554 455788999887421 111112223332 39999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++.. ++...+.|++|-+++.+
T Consensus 237 v~~~~----~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPAT----LEPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhh----HHHHHHHHhcCCEEEEE
Confidence 99332 33334455665555433
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=1 Score=47.75 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc----HHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s----~~~A~~~-G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.. ++..... -....+....+..+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999886521 113355554443 222 2221100 0111000013556788999999998
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 65
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.47 Score=51.71 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecC-CCcCCHh-hhhccCCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d-~t~~d~~-Eav~~ADIVILav 186 (583)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999996 89999998877654 1346554443221 1111110 0000000 0011222 2257899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.....++.+.+ +.|..|+|.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666653 457778877664
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.2 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
+|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999988 76 454443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.46 Score=50.27 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=54.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
.++| |++.|||-+ ..|..++.-|.+. | ..|.+.... +.++.+.+++||+
T Consensus 154 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~ADI 207 (293)
T PRK14185 154 ETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEADI 207 (293)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCCE
Confidence 4789 999999977 7899999998765 4 345544221 2356788899999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||.++.-... +. .+.+|+|++|+|+
T Consensus 208 vIsAvGkp~~---i~--~~~vk~gavVIDv 232 (293)
T PRK14185 208 IIAALGQPEF---VK--ADMVKEGAVVIDV 232 (293)
T ss_pred EEEccCCcCc---cC--HHHcCCCCEEEEe
Confidence 9999985443 22 3567999998886
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.43 Score=52.39 Aligned_cols=65 Identities=29% Similarity=0.282 Sum_probs=45.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
++| ++|.|||+|-.|.+.|.-|++. |++|.+.++.... .....+.|+.. . ..+ .+.+.++|+||.
T Consensus 7 ~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~-~--~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 7 FAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITT-A--DLR-TADWSGFAALVL 71 (460)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCccc-c--CCC-hhHHcCCCEEEE
Confidence 678 8999999999999999999988 9987766544222 22334567753 1 112 234578999886
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.32 Score=52.56 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=50.3
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce---e-cCC-C---------c--CCHh-
Q 007951 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~---~-~d~-t---------~--~d~~- 173 (583)
|||.++|.|++|+++ +.-|.++ |++|+..+ .++...+.-.+.|.- . .+. . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd-~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVD-VNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEE-CCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999977 5555555 78765554 333344444455641 1 111 0 0 0112
Q ss_pred --hhhccCCeEEEeccchHHHHHHHHHHhcC
Q 007951 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (583)
Q Consensus 174 --Eav~~ADIVILavpd~a~~~Vl~eI~~~L 202 (583)
+.+..+|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 23447788888888777666666555544
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.76 E-value=1 Score=48.12 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=40.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceec--CCC-cC-CHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE--NGT-LG-DIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~~--d~t-~~-d~~Eav~~ADIVILa 185 (583)
+||+|||.|.+|.+.|..|... +.+-++++.+....+..-.|.+ ++.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1233555555442222222211 111000 000 11 125678999999996
Q ss_pred c
Q 007951 186 I 186 (583)
Q Consensus 186 v 186 (583)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 5
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.9 Score=48.44 Aligned_cols=157 Identities=12% Similarity=0.051 Sum_probs=90.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.||+||| -|-.|.-+.+-|.+. + .+++. .....+. +. ..+.+++++++|+||+|+|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P----~~el~-~l~s~~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-D----DIELL-SIAPDRR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-C----CeEEE-EEecccc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4899999 578888888777754 1 23432 2222111 22 2345567788999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++.+.+. ..|..|+|.+|-- .+.+ +++.+.|--... .|+...+ ... |+ .+.+.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSadf---------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTAY---------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChHH---------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 888877653 3688888887641 1112 566667744322 2222222 222 43 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~ 321 (583)
..+.-++++=+...|.. +......+.+.+..||.+-..++.+.
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhh
Confidence 55555555544444532 11111245566777888877666655
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.41 Score=51.09 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.3
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc--ccHHHHHHcCc-eecC-CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s--~s~~~A~~~G~-~~~d-~t~~d~~Eav~~ADIVIL 184 (583)
.||+|||. |.+|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 54 5555544321 12222111111 1111 112345789999999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 643
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.39 Score=54.41 Aligned_cols=75 Identities=25% Similarity=0.186 Sum_probs=49.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILav 186 (583)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+... -...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEecc
Confidence 567 8999999999999999999988 8888887776555555554443211 001122222 23568888888
Q ss_pred cchHH
Q 007951 187 SDAAQ 191 (583)
Q Consensus 187 pd~a~ 191 (583)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 76543
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.27 Score=46.68 Aligned_cols=91 Identities=18% Similarity=0.256 Sum_probs=51.6
Q ss_pred ccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.|+. .+..+| ++|++||+ +.+ ++..|+.. +.++.+.++.... ... ...++. ..+.++++++|
T Consensus 2 ~~d~-~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~a 63 (147)
T PF04016_consen 2 AFDL-LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWA 63 (147)
T ss_dssp CHHH-CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-
T ss_pred hhhh-hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccC
Confidence 3444 477788 99999997 333 67777765 7788888775322 111 112222 34678899999
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+|++.=. ...-..+++|..+.++++.++
T Consensus 64 D~viiTGs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 64 DVVIITGS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp SEEEEECH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred CEEEEEee-eeecCCHHHHHHhCccCCeEE
Confidence 99987422 222234445555555455443
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.87 Score=45.58 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
.+.|+. .+|.|||+|.+|..++++|... |+ ++++.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 577888 9999999999999999999987 76 3544443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.4 Score=44.89 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=56.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCC---Hhhhh------cc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav------~~ 178 (583)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.|+.. +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 57 8999999999999999988887 876 5444 44555678888888742 111 11111 24
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+|+-++.... .+++....++++..++..
T Consensus 188 ~d~vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 788888875322 333444455665554433
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.65 Score=49.56 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=54.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCc-ccHHHHHHcCc------e--ecCCCcCC-HhhhhccC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s-~s~~~A~~~G~------~--~~d~t~~d-~~Eav~~A 179 (583)
+||+|||+ |-||.-++..|.+. . ++++...+..+ ..........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 47999995 99999999887664 3 45544433321 11111111111 0 00000111 12345789
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|++|+|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988888765533 57777777764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.64 Score=46.56 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=59.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavp 187 (583)
|||+||| -|..|.-+++-..+. |++|....|+.++.... .|......-+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 689999999999988 99988777765543221 233111111233 3467888999999764
Q ss_pred ch------HHHHHHHHHHhcCCC-CcE-EEEecCch
Q 007951 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (583)
Q Consensus 188 d~------a~~~Vl~eI~~~Lk~-Gai-L~~a~G~~ 215 (583)
.. .+.+..+.+...++. |.. +.++.|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 32 223344445555554 432 56666653
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.1 Score=50.17 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=65.6
Q ss_pred hhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-----ceec------
Q 007951 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (583)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-----~~~~------ 165 (583)
.++| ++|+|+|+ .+-...++..|.+. |.+|.+.+..-.. .+.....+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4678 99999998 56777788888877 9888777654221 11111121 1000
Q ss_pred -------CCCcCCHhhhhccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 166 -------d~t~~d~~Eav~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 01134557899999999999998877653 56677777765578887665
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.51 Score=49.75 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+. .-+.+..|.+.... ..++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVG~Pla~lL~~~--~~~~~AtVt~~hs~-------------------t~~l~~~~~~ADIVI~A 211 (286)
T PRK14184 154 SPAG-KKAVVVGRSNIVGKPLALMLGAP--GKFANATVTVCHSR-------------------TPDLAEECREADFLFVA 211 (286)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHhCC--cccCCCEEEEEeCC-------------------chhHHHHHHhCCEEEEe
Confidence 4788 999999977 7899999999872 00015566554421 13567889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+++|+|++|+|++
T Consensus 212 vG~p~l---i~--~~~vk~GavVIDVG 233 (286)
T PRK14184 212 IGRPRF---VT--ADMVKPGAVVVDVG 233 (286)
T ss_pred cCCCCc---CC--HHHcCCCCEEEEee
Confidence 964332 32 24469999988874
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.3 Score=45.23 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=60.7
Q ss_pred eeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcC
Q 007951 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 92 ~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~ 170 (583)
.++-+....|+-. =.++| ++|.|||.|.+|..=+..|.+. |.+|.|.-..- +.-.+.+....+.... ...
T Consensus 8 ~~~~~~~~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~-r~~ 78 (223)
T PRK05562 8 DIYNEENKYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIK-GNY 78 (223)
T ss_pred HHhhccCCEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCC
Confidence 3333334445533 45668 8999999999999989999888 87777664442 2322333322232211 112
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
+. +-+.++++||.||.|...-+-+.+.+
T Consensus 79 ~~-~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 79 DK-EFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred Ch-HHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 22 34678999999999987766555444
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.2 Score=45.06 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999987
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.68 Score=49.94 Aligned_cols=85 Identities=15% Similarity=0.142 Sum_probs=62.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccC--CeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A--DIVILavpd 188 (583)
-++||+|+|.|+.=++++|.-. .+ +++.|+ +..++-+++.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4689999999999999998764 22 145433 33454556678888888821 12267899999876 999999999
Q ss_pred hHHHHHHHHHHh
Q 007951 189 AAQADNYEKIFS 200 (583)
Q Consensus 189 ~a~~~Vl~eI~~ 200 (583)
.++.+++-.++.
T Consensus 83 ~qH~evv~l~l~ 94 (351)
T KOG2741|consen 83 PQHYEVVMLALN 94 (351)
T ss_pred ccHHHHHHHHHH
Confidence 999888765543
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.72 Score=49.65 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=54.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEE-E-ecCCcccHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViV-g-~r~~s~s~~~A~~~G~~~~d~t~~d-~~Eav~~ADIVIL 184 (583)
.||+||| .|..|.-+.+-|.++ ++ ++.+ . .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 578888888888765 54 2222 1 2222222211 12110 0111 1245588999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999998877777653 368888888764
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.1 Score=47.77 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=87.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.+|+||| .|..|.-+.+-|.+. . .+++. .....+.. . ..+.++..+++|+||+|+|...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-p----~~~l~-~~~s~~~~------~--------~~~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-S----DIELL-SIPEAKRK------D--------AAARRELLNAADVAILCLPDDA 62 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-C----CeEEE-EEecCCCC------c--------ccCchhhhcCCCEEEECCCHHH
Confidence 6899999 799999998877765 1 23432 22221111 1 1122345578999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++.+++. +.|..|+|.++- | .+.+ +++.+.|--... .|+...+ ... |+ ++++.
T Consensus 63 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC~ 117 (313)
T PRK11863 63 AREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGCY 117 (313)
T ss_pred HHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCcH
Confidence 888887764 368888888763 1 2112 566667743221 2333332 222 33 44445
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl 320 (583)
..+.-++++=+..-|.. ++.....+.+.++.||.+-..++.+
T Consensus 118 ~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~~ 159 (313)
T PRK11863 118 PTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAAY 159 (313)
T ss_pred HHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHHH
Confidence 45555554444444432 1211123455666778777655543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.3 Score=47.91 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=53.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC-------------------CcccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~-------------------~s~s~~~A~~~---- 160 (583)
.+.+++ ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 457888 9999999999999999999988 76 45555443 11211111111
Q ss_pred -Cceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+... .... .+..+.++++|+||.|+-.......+.++.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123456788999999987665555555543
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.4 Score=51.41 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (583)
+.-+| .+++|+|+|..|.|.+++.|.. |..-|+|.+.++...++|++.|+.+
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 34466 8999999999999999999988 8766789999888899999999975
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.3 Score=45.20 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=60.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-----Cceec-CCCcCCHhhh---hccC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEE-NGTLGDIYET---ISGS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-----G~~~~-d~t~~d~~Ea---v~~A 179 (583)
.. ++|..||+|..|.+-..-++...+ +- .+++.+.++...+.|++. |+... .=...|..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999887754433333210 11 356888777666666542 22100 0001222222 3578
Q ss_pred CeEEEecc----chHHHHHHHHHHhcCCCCcEEEE--ecCc
Q 007951 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (583)
Q Consensus 180 DIVILavp----d~a~~~Vl~eI~~~Lk~GaiL~~--a~G~ 214 (583)
|+|++.+= .....++++.+...|+||.+++. +||.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999851 24557799999999999998664 4554
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.2 Score=45.96 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=56.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++ +++.|+|.|.+|...++-++.. |.++++..+..+...+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 45 7899999999999999888877 8875555555555566665554331 111122357999999886
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 189 AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. .++...+.++++-.++..
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566666655543
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.4 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (583)
-||+|||. |++|.++|..|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.65 Score=48.36 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=49.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.+...+.. ..+.. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~~~-~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRPDL-GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chhhc-ccccCCEEEECCcccc
Confidence 6899999999999999999987 86 6888898876666666654432 11100 1246899999999654
Q ss_pred H
Q 007951 191 Q 191 (583)
Q Consensus 191 ~ 191 (583)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.83 Score=49.73 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=46.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc---ccHHHHHHcCceecCCCcCCHhhhhcc-CCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s---~s~~~A~~~G~~~~d~t~~d~~Eav~~-ADIVI 183 (583)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 467 8999999999999999999998 998877654322 1223334557653100 123344444 89888
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 743
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.9 Score=45.16 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=58.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc---cCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~---~ADIVI 183 (583)
+| ++|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|...- +..-.+..+... ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADV-SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeC-CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999888877 87 4544444 4456788888887420 101112223222 379999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-++.... .++.....+++|-.++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9887532 334444556676655544
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.86 Score=48.93 Aligned_cols=89 Identities=21% Similarity=0.151 Sum_probs=52.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCce--EEEEecCCc---ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~--ViVg~r~~s---~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|+|||. |..|.-+.+-|.++ ++. .+......+ +.....- ..+... -.+..+ ++++|+||++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFla 73 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFFA 73 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEEc
Confidence 68999995 99999999999875 442 112232211 1111000 001110 012223 4789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++.+++. +.|..|+|.+|-
T Consensus 74 ~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 74 AGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred CCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 99876666666553 357778887764
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.81 Score=48.42 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=51.6
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||-| ++..|++..+..- |.++.+....+ +.-.+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 3788 899999995 9999999998876 88887775542 122356666665321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.5 Score=46.62 Aligned_cols=116 Identities=9% Similarity=0.141 Sum_probs=76.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.+|.|.| .|.-|..+-..++.. |-+++.|...+.- ..+-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6788888 788888888888887 8888888765420 112257664 5677777654 7999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhccccc--CCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD--FPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~--~p~dv~VI~v~PngPg~~ 243 (583)
....+.+++.... .-..+|++++||.....+..... -..++.++ =||+.|-.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi--GPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI--GPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE--CCCCceee
Confidence 9999999875541 22347889999963322111111 11234444 48887665
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.1 Score=45.76 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|++ .+|.|||+|-.|..++.+|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999987
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.81 Score=50.97 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHc--CceecCCCcC-CHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~--G~~~~d~t~~-d~~Eav~~ADIVI 183 (583)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 457 8999999999999999999998 998876554322 222333334 43321 11 2345667899999
Q ss_pred Ee--ccc
Q 007951 184 LL--ISD 188 (583)
Q Consensus 184 La--vpd 188 (583)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 85 555
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.91 Score=47.93 Aligned_cols=79 Identities=11% Similarity=0.186 Sum_probs=54.8
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.. +..+..|.+.... +.++.+.+++||+||.+
T Consensus 150 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~A 207 (287)
T PRK14181 150 PLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIAA 207 (287)
T ss_pred CCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 4789 999999977 78999999887650 0002345443211 24577889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+.+|+|++|+|+.
T Consensus 208 vG~p~~---i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 208 IGVPLF---IK--EEMIAEKAVIVDVG 229 (287)
T ss_pred cCCcCc---cC--HHHcCCCCEEEEec
Confidence 985432 32 35679999998863
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.69 Score=51.63 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=47.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s---~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.+.+ |||.|+|+|.-|.+.+..|++. |..|++.+.+.... .......++....+.. ..+...++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~--~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH--DDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc--chhccccCCEEE
Confidence 3457 9999999999999999999998 99988887543221 1222345654321111 125677889988
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 73
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.2 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=57.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
++|+|||--.=-..+++.|.+. |++|.+..-.++. . ...|... ..+.++++++||+|++.+|+..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~~~ 68 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGTND 68 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccccC
Confidence 8999999988888889999988 9987764222211 1 2347664 4567888999999999988621
Q ss_pred ----HHH------HH-HHHHhcCCCCcEEE
Q 007951 191 ----QAD------NY-EKIFSCMKPNSILG 209 (583)
Q Consensus 191 ----~~~------Vl-~eI~~~Lk~GaiL~ 209 (583)
... .+ .+....|++|+++.
T Consensus 69 ~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 69 EGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred CceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 000 11 35677788987544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.1 Score=47.64 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=54.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCc--ccHHHHHHcCceecCCCcCCHh-hhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~-Eav~~ADIVIL 184 (583)
++|+||| .|..|..+.+-|.+. ++ ++....+..+ +... -.|... .+.+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7899999 689999999888876 55 3333333211 1111 012111 022221 33478999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|.....++.+.+. +.|..|+|.++-
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCch
Confidence 999888877777653 467777777653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.3 Score=47.76 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHH-----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~----- 159 (583)
.+.|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 577888 9999999999999999999887 76 444443321 011111111
Q ss_pred cCceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 160 ~G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
-.+... .... .+..+.++++|+||.++-+-....++.+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 011110 0111 123467899999999987665555666543
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.60 E-value=1.1 Score=47.65 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=55.3
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHH----HHcC--ceecCCCcCCHhhhh
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A----~~~G--~~~~d~t~~d~~Eav 176 (583)
|+| +||++||=| ||+.|+...-..- |.++.+.... ++.-.+.| .+.| +.. +.|+.+++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 888 999999977 7777777766655 8888887554 33333444 3345 333 56899999
Q ss_pred ccCCeEEEeccchHH--HHHHHHHHhcCC
Q 007951 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (583)
Q Consensus 177 ~~ADIVILavpd~a~--~~Vl~eI~~~Lk 203 (583)
++||+|.-=+-...- .+.+++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999875543322 223444444444
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.36 E-value=5.2 Score=43.22 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=81.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--e-EEEEecCCcccHHH-HHHcCceecCCCcCC---HhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~--~-ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d---~~Eav~~ADIVI 183 (583)
++|||+| .|..|.-+.+.|.++ .+ . +.+.-...+. -+. ..-.|+.. .+.+ .....++.|++|
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSa-G~~~~~f~~~~~---~v~~~~~~~~~~~~~Divf 71 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSA-GKKYIEFGGKSI---GVPEDAADEFVFSDVDIVF 71 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEeccccc-CCccccccCccc---cCccccccccccccCCEEE
Confidence 6899998 699999999999886 33 2 2222222111 111 11122211 0111 123456899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
.+.+.....++.++.. +.|.+|++.++.. ..-+|+++ +.|---.... -.+.. +| .+|
T Consensus 72 ~~ag~~~s~~~~p~~~---~~G~~VIdnsSa~---------Rm~~DVPL--VVPeVN~~~l-~~~~~------rg--~Ii 128 (334)
T COG0136 72 FAAGGSVSKEVEPKAA---EAGCVVIDNSSAF---------RMDPDVPL--VVPEVNPEHL-IDYQK------RG--FII 128 (334)
T ss_pred EeCchHHHHHHHHHHH---HcCCEEEeCCccc---------ccCCCCCE--ecCCcCHHHH-Hhhhh------CC--CEE
Confidence 9999888877777765 4688888887642 21234444 3452222221 11221 34 434
Q ss_pred eecCCCCHHHHHHH-HHHHHHhCCCcccccchhh
Q 007951 264 AVHQDVDGRATNVA-LGWSVALGSPFTFATTLEQ 296 (583)
Q Consensus 264 Av~qd~sgeale~a-~ala~aIG~~~vieTtf~e 296 (583)
+ +.|++-..+-.+ +-|....|..++.-||...
T Consensus 129 a-npNCst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 129 A-NPNCSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred E-CCChHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 4 666665544444 3455557765565554443
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.5 Score=48.61 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=29.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++ ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~ 173 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRH 173 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Confidence 67 8999999999999999999988 9888776554
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.6 Score=38.91 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.5
Q ss_pred ccchhHHHHHHHHHHhhhhhcCCceEEEEecCC---cccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccchHHH
Q 007951 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (583)
Q Consensus 118 G~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~---s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~a~~ 192 (583)
|+|.+|.+++..|...-.. .+++++...+++ ...+......... +.+.++++. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876110 134443333322 1222222222222 568888888 899999999988877
Q ss_pred HHHHHHHhcCCCCcEEE
Q 007951 193 DNYEKIFSCMKPNSILG 209 (583)
Q Consensus 193 ~Vl~eI~~~Lk~GaiL~ 209 (583)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 766654 45666443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.4 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
+|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999987 76 4555444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.18 E-value=2.4 Score=44.38 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=59.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILavp 187 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+. .+.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 7999999999999888877776 8876655444 44578999999753 2221 111234688887765
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEe
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. ..+....+.+++|-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666778887765443
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.9 Score=45.08 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=71.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cH-H---HH---HHcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF-A---EA---RAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~-~---~A---~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|+|+ |.||..+.+.+... .++++..+...... +. . .+ ...|+.. ..+......++|++
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV~ 73 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADVL 73 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCEE
Confidence 78999998 99999999999876 14565555443321 11 1 11 1122222 23456677899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
|=-+-|+...+.++....+ +-.+|+=..||+-..++. .-...+.+.+| .+||+.--+
T Consensus 74 IDFT~P~~~~~~l~~~~~~--~~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfSiGv 130 (266)
T COG0289 74 IDFTTPEATLENLEFALEH--GKPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFSLGV 130 (266)
T ss_pred EECCCchhhHHHHHHHHHc--CCCeEEECCCCCHHHHHH-HHHHHhhCCEE-EeccchHHH
Confidence 9999998887777754332 122566678887333321 01122345555 678775433
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.75 Score=49.45 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEec
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G~~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILav 186 (583)
.+|+|||. |..|.-+.+-|.++ ++ ..++...... ..+.....-. ... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEECC
Confidence 78999996 99999999888764 11 1243332221 1122211000 111 2233333 26899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.....++.+++. +.|..|+|.++-
T Consensus 75 p~~~s~~~~~~~~---~~g~~VIDlS~~ 99 (336)
T PRK08040 75 GREASAAYAEEAT---NAGCLVIDSSGL 99 (336)
T ss_pred CHHHHHHHHHHHH---HCCCEEEECChH
Confidence 9987777777654 368888888764
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.77 Score=47.61 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=46.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC---CHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIVILavp 187 (583)
|||.|+| .|.+|..++..|.+. |++|++..|..++. ......|+....+.+. +..++++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999998 99988777764322 1112234432111122 34567889999998764
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.6 Score=47.47 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHH---Hc-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~---~~- 160 (583)
.+.|++ .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+....+. +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 577888 9999999999999999999987 76 444444320 01111011 11
Q ss_pred -Cce--ecCCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~--~~d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+. .....+ .+..+.++++|+||-|+-.-....++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 124467889999999988877766777654
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.6 Score=50.37 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~ 342 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRH 342 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCC
Confidence 57 9999999999999999999988 9988877654
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.2 Score=47.78 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+..... +...+ .+.+.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 999999975 7888888888776 88877765432 12222 2334563210 156899999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.5 Score=46.56 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=49.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--cH----HHHHHcC-ceecCCCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~--s~----~~A~~~G-~~~~d~t~~d~~Eav~~ 178 (583)
.++| +||++||- +++..|++..+..- |.++.+.-.+.-. .. +.+.+.| +.. ..+.++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 3688 99999997 68999999988876 8888776654311 11 2233444 232 4688999999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999844
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.81 E-value=2.2 Score=44.05 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=61.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHhhhhc---cCC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~~Eav~---~AD 180 (583)
|.| ++|-=|||| |+.++.-|... |.+| .|.+-.++..+.|+ +.|+.. +-...+.+|+.. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 45666666665 8775 57777777776666 445442 112345566655 578
Q ss_pred eEEE-----eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVIL-----avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+. .+|+... ++......+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 8876 3554433 777888899999877666
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=1.4 Score=47.39 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=48.8
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..+++..+..- |.++.+.-... ....+ .+.+.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 999999976 7889998888776 88877665432 11222 2344453210 146889999
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
+++|+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.2 Score=47.35 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=54.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|.+. .++.+..|.+.... +.++.+.+++||+||.+
T Consensus 158 ~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVsA 215 (297)
T PRK14168 158 ETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIVA 215 (297)
T ss_pred CCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEEe
Confidence 5788 999999966 7899999988765 00002355553221 23567888999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.-... +. .+.+|+|++|+|+
T Consensus 216 vGkp~~---i~--~~~ik~gavVIDv 236 (297)
T PRK14168 216 AGVPNL---VK--PEWIKPGATVIDV 236 (297)
T ss_pred cCCcCc---cC--HHHcCCCCEEEec
Confidence 874332 22 3457999998886
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.9 Score=44.35 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t-~~d~~Eav~~ADIVILav 186 (583)
.| ++|.|+|.|.+|...++-++.. |.++++.....++..+.+++.|...- +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 46 8999999999999999988887 88776655554454556667786320 000 001222233578988887
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.... .+++....+++|-.++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6322 3344445566665544
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.48 E-value=6 Score=43.27 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=88.0
Q ss_pred CEEEEEcc-chhHHHHHH-HHHHhhhhhcCCce---EEEEecCCcccHHHHHHcCceecCCCcCC--HhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~-nLrdsl~~~g~G~~---ViVg~r~~s~s~~~A~~~G~~~~d~t~~d--~~Eav~~ADIVIL 184 (583)
++|||||. |..|.-+.+ -|.+. .+. +.. ..+. ++-..-. .+......+.+ ..+..+++|+||+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~--~f~g~~~~v~~~~~~~~~~~~Divf~ 71 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAP--SFGGKEGTLQDAFDIDALKKLDIIIT 71 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCccc--ccCCCcceEEecCChhHhcCCCEEEE
Confidence 68999996 999999997 55544 443 433 2221 1111111 11100001111 1234578999999
Q ss_pred eccchHHHHHHHHHHhcCCCC--cEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~G--aiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
++|.....++.+++.. .| .+|+|.++.- ...+ +|..+-|---...++..-. .|...
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~f---------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i- 129 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAASTL---------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT- 129 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECChHH---------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE-
Confidence 9999877777776543 57 5688887642 1122 4555556444333322001 23333
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~ 323 (583)
|+ +++++.-++-++++=+...|.. +++-+ ....+||++...++.+.+.
T Consensus 130 Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~q 178 (369)
T PRK06598 130 FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQ 178 (369)
T ss_pred EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHH
Confidence 34 5555655655555545555532 23322 2234788887766665544
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=88.36 E-value=2.4 Score=46.17 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=60.9
Q ss_pred hcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
++| ++|+|.|+ .+-...++..|.+. |.+|.+.+..-.. ... ...+. +.+..++++
T Consensus 311 ~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~~ 375 (411)
T TIGR03026 311 LKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEALK 375 (411)
T ss_pred ccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHHh
Confidence 678 99999998 45677788888887 9998877654222 111 11111 357789999
Q ss_pred cCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a 211 (583)
+||+|++++.-....+ -++.+...+++ .+|+|.
T Consensus 376 ~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 376 GADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred CCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 9999999999887765 35567666653 356553
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.7 Score=46.51 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=54.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH-HHHHcCcee--------cCCCc--CCHhhhhccC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGTL--GDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~-~A~~~G~~~--------~d~t~--~d~~Eav~~A 179 (583)
+||+|+| .|.+|..+.+.|.+. ...+++...+..+..-+ .....++.. .+-.+ .+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 6899998 899999999988865 12354433233211110 110011100 00001 133 445789
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|++++|.....++.+.+. +.|..+++.+|-
T Consensus 78 DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFA---KAGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHH---HCCCEEEECCch
Confidence 99999999987777766543 357767777663
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.8 Score=45.59 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=39.4
Q ss_pred EEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC--ceecCCC-cCCHhhhhccCCeEEEecc
Q 007951 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENGT-LGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 116 IIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~d~t-~~d~~Eav~~ADIVILavp 187 (583)
|||.|.+|.++|..|... ++ ++++.+...++....+.+ +. +...+.. ..+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999876 65 565555443332322221 11 1000000 1233578899999999654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.23 E-value=3.2 Score=43.95 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc----ccHHH-HHHcCceecCCCcCCHhhhhccCC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s----~s~~~-A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
.++| .||++||- ++...+++..+..- |.++.+.....- ...+. +++.|.... ...+.+++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 3678 89999997 78899999988876 888777654321 11121 555674320 1468899999999
Q ss_pred eEEEe
Q 007951 181 LVLLL 185 (583)
Q Consensus 181 IVILa 185 (583)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=88.19 E-value=2 Score=43.57 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.+ ++|.-||+|+ | .++..+... |...+++.+.++...+.|++. ++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777776666555543 3310 0000000014799887
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 666666677888999999999877654
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.3 Score=47.82 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=55.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHH-hhhhhcCCce---EEEEec--CCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGLR--KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrd-sl~~~g~G~~---ViVg~r--~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.+|||||. |..|.-+.+-|.+ . .++ +..... ...+......+ ..... -.+.. ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999996 9999999998874 4 443 322222 22222211111 11110 12333 3478999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|.....++.++.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777777653 468888888764
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.2 Score=50.44 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=49.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC--------------------cccHHHHHHcCceec-
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~- 165 (583)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+.. ....+.+.+.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999988 98887765321 123456677786421
Q ss_pred CCCc-C--CHhhhhccCCeEEEeccc
Q 007951 166 NGTL-G--DIYETISGSDLVLLLISD 188 (583)
Q Consensus 166 d~t~-~--d~~Eav~~ADIVILavpd 188 (583)
+... . +..+.-...|.||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 122333457888888763
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.6 Score=46.84 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=47.9
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccH----HHHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~----~~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+..... +... +.+.+.|.... ...++.+++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 6788888888776 88877765432 1111 22344563210 157899999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 224 ~~aDvVyt~ 232 (334)
T PRK01713 224 KGVDFVHTD 232 (334)
T ss_pred CCCCEEEEc
Confidence 999999974
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=1.5 Score=48.70 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.++|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999998 999888764322111 1222222221 1 1122456678999988
Q ss_pred e
Q 007951 185 L 185 (583)
Q Consensus 185 a 185 (583)
.
T Consensus 76 S 76 (468)
T PRK04690 76 S 76 (468)
T ss_pred C
Confidence 4
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=87.80 E-value=2.2 Score=46.61 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 8999999999999999999987
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.40 E-value=3.1 Score=43.98 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHh
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrds 133 (583)
.+.|+. .+|.|||+|-.|..++++|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 577888 9999999999999999999988
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.39 E-value=3.6 Score=43.23 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=55.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHH-hhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrd-sl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.| .++.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ...+..+.. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 35 799999999999988877775 3 3 355554443 44566676655431 011111111 479999888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
........+++....+++|-.++.
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEE
Confidence 743334456666667888765543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.9 Score=47.13 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=46.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCC-HhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~--~G~~~~d~t~~d-~~Eav~~ADIVI 183 (583)
+++ ++|.|+|.|..|.+.|+-|.+. |++|.+.+..... ..+..++ .|+... ... ..+...+.|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 457 8999999999999999999988 9987766544322 1222222 366431 111 233456899999
Q ss_pred Ee--ccc
Q 007951 184 LL--ISD 188 (583)
Q Consensus 184 La--vpd 188 (583)
.. +||
T Consensus 73 ~spgi~~ 79 (445)
T PRK04308 73 LSPGISE 79 (445)
T ss_pred ECCCCCC
Confidence 84 454
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.2 Score=45.60 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=54.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc--eecCCCcCCHh----hhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIY----ETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~--~~~d~t~~d~~----Eav~~ADIVILa 185 (583)
..|-|+|+|.+|..+++.|++. |.++++.+.+ + .+.....|. ...| ..+.+ .-+++|+.|+++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD--~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGD--SSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeC--CCCHHHHHhcCcccCCEEEEc
Confidence 4688999999999999999988 8877665543 1 233333443 3212 22322 236789999999
Q ss_pred ccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
++++......-.....+.|+ +++.-+
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 98876644332223334443 455543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.1 Score=49.52 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~ 359 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRH 359 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 57 8999999999999999999998 9988887654
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.5 Score=48.93 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=59.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eE--EEEecCCc------ccHHHHHHc--Cce--ecC-CCcCCHhh
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GFT--EEN-GTLGDIYE 174 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~V--iVg~r~~s------~s~~~A~~~--G~~--~~d-~t~~d~~E 174 (583)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++. .-+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 66 8999999999999999999998 76 32 22232211 234555552 211 001 11345778
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCc--EEEEecCc
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga--iL~~a~G~ 214 (583)
.++..|+|++.+-+..+.+.-.-....++.|+ +.....|.
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~ 242 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ 242 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 99999999999886655542221222334443 34455554
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.1 Score=46.78 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=54.2
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHH---c-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA---A- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~---~- 160 (583)
.+.|+. .+|.|||+|-.|..++++|..+ |+ ++++.+... .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 578888 9999999999999999999988 66 333333210 011111111 1
Q ss_pred -Ccee--cCCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~--~d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+.. ....+ .+..+.++++|+||.|+-+-....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 00111 123467899999999988777777777654
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=2 Score=45.94 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.8
Q ss_pred CEEEEEccchhHHHHHHHHHHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (583)
++|+|||+|++|..+++.|.+.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999998873
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=3.7 Score=44.28 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=47.8
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.++| .||++||- .++..+++..+..- |.+|.+..... +.-.+. +...|.... ...++.|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 47888888887765 88877765432 122223 233453210 1468899999
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=86.47 E-value=2.1 Score=46.03 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..+++..+..- |.++.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999997 7888888888766 88876665432 11112 2334564310 146889999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 223 ~~aDvvyt~ 231 (331)
T PRK02102 223 KGADVIYTD 231 (331)
T ss_pred CCCCEEEEc
Confidence 999999984
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.35 E-value=2.3 Score=45.58 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=53.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCcee---------cC------CC---cC---
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---LG--- 170 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~---------~d------~t---~~--- 170 (583)
+|||+|+|.+|+.+.+.|.++ ..+.+++|+..++. +.+......+++-+. ++ +. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 589999999999999998865 00013565443332 223333333333110 00 00 11
Q ss_pred CHhhh---hccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 171 d~~Ea---v~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 22221 1478999999998877665553 456787655443
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.9 Score=51.19 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=45.9
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
++|.|||+|-.|.+- |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999998 99987666543333334455687642 12233567789999873
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.7 Score=47.29 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.0
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH----HHH-HcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~----~A~-~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+|.|||+|-.|.++|+-|++. |++|.+.+........ ..+ ..|+... .....+.++++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEEC
Confidence 588999999999999999998 9998776654322111 112 2476531 11224567889988873
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=86.04 E-value=1.7 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEccchhHHHHHHHHHHh
Q 007951 113 QIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrds 133 (583)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999988
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.6 Score=45.41 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=48.7
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccH----HHHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~----~~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| .||++||-+ ++..|++..+..- |.++.+...+. ..-. +.+.+.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4778 899999986 6889988888776 88877765432 1112 23444563210 156889999
Q ss_pred ccCCeEEEe
Q 007951 177 SGSDLVLLL 185 (583)
Q Consensus 177 ~~ADIVILa 185 (583)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999975
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.6 Score=42.06 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.1
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s 151 (583)
+..++ |+|.|+|. |.+|..+++.|.+. |++|++..|..+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVD 52 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHH
Confidence 45567 99999995 99999999999998 998877666543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.7 Score=46.54 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCce---EEEEecC--CcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEe
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~---ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILa 185 (583)
||+||| .|..|..+.+-|.+. ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||+|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 589999 899999999988776 553 2222222 112221 112111 01111 2345889999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|.....++.+++. +.|..|+|.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988877776653 467778877764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=2.2 Score=45.25 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=53.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |++.|||-+ ..|..++.-|.+.. ...+..|.+... + +.++.+.+++||+||.+
T Consensus 154 ~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIsA 211 (297)
T PRK14167 154 DTEG-ADVVVVGRSDIVGKPMANLLIQKA--DGGNATVTVCHS---R----------------TDDLAAKTRRADIVVAA 211 (297)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHhcCc--cCCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEEc
Confidence 4889 999999976 78999999887530 000235555322 1 23567788999999998
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+--.. ++. .+++|+|++|+|+
T Consensus 212 vGkp~---~i~--~~~ik~gaiVIDv 232 (297)
T PRK14167 212 AGVPE---LID--GSMLSEGATVIDV 232 (297)
T ss_pred cCCcC---ccC--HHHcCCCCEEEEc
Confidence 86433 222 3567999998886
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=85.54 E-value=2.8 Score=45.46 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=48.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcC---ceecCCCcCCHhhhhcc
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G---~~~~d~t~~d~~Eav~~ 178 (583)
.++| .||++||-+ ++..+++..+..- |.++.+..... ....+.+++.| +.. ..++++++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4778 899999975 6777877777766 88877665432 22334455555 232 5688999999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999864
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.46 E-value=4.3 Score=45.21 Aligned_cols=84 Identities=18% Similarity=0.077 Sum_probs=54.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
=.|+| ++|.|||.|.+|..=++.|.+. |.+|.|.-.. .++-.+.+.+..+...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 35788 9999999999999999999988 8777665433 2222233332222211111 12 345789999999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
||.|...-+-+.+.
T Consensus 79 at~d~~~n~~i~~~ 92 (457)
T PRK10637 79 ATDDDAVNQRVSEA 92 (457)
T ss_pred CCCCHHHhHHHHHH
Confidence 99998765544433
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.12 E-value=2.3 Score=46.52 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHH--cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~--~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-+|.|||+|..|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999988 9988766654322 2222223 36653100 1124556789998873
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=84.91 E-value=3.8 Score=43.24 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|+. .+|.|||+|-.|..+|+||.-+ |+ .+.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 356667 8999999999999999999988 77 444444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=84.77 E-value=9.8 Score=32.93 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=54.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCH----hhhhccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDI----YETISGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~----~Eav~~AD 180 (583)
.+ ++|.-||+|.= .++..+.+... +.+ +++.+.++...+.++ ..+.....-...+. .......|
T Consensus 19 ~~-~~vldlG~G~G--~~~~~l~~~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSG--SITIEAARLVP----NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCC--HHHHHHHHHCC----Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 78999999983 33444443310 224 466666555444443 23321000001121 12235789
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+|++.-++....++++++...|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=84.62 E-value=3.3 Score=39.19 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=48.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH---hhhhccCCeEEEeccch
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~---~Eav~~ADIVILavpd~ 189 (583)
++.|+|.|..|..++..|++. |++++-..+.+..... ..-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~~-~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQG-TSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCccccC-cccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 368999999999999999988 9987666655432111 12245543 2233 33344568899999754
Q ss_pred HH-HHHHHHHH
Q 007951 190 AQ-ADNYEKIF 199 (583)
Q Consensus 190 a~-~~Vl~eI~ 199 (583)
.. .++++.+.
T Consensus 70 ~~~~~i~~~l~ 80 (201)
T TIGR03570 70 KLRRRLFEKLK 80 (201)
T ss_pred HHHHHHHHHHH
Confidence 43 44555544
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.56 E-value=1.5 Score=47.88 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=42.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC-CCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d-~t~~d~~Eav~~ADIVIL 184 (583)
++|||||-|-.|.=|++.-+.- |+++++.+.. +.+-........+..+ .....+.+++++||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 7899999999999999988877 9998776533 2222222223333210 001136678889999865
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=84.49 E-value=7.4 Score=42.17 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=61.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc-CCHhhh----h--ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYET----I--SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~-~d~~Ea----v--~~ADI 181 (583)
.| .++.|+|.|.+|...++-++.. |.++++..+.+....+.|++.|+..-+... .+..+. . ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 45 7999999999999999888877 887555545555678889999874211110 122222 2 24799
Q ss_pred EEEeccchHH-----------HHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~-----------~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++-.... ...+++....+++|-.|+..
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 9998875421 23556555667776655443
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=84.44 E-value=3.3 Score=45.63 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.1
Q ss_pred hhcCCCEEEEEcc-----c---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcC
Q 007951 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (583)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~ 170 (583)
-++| +||+|+|- | ++..|++..+..- |.++.+.-.++ +...+. +.+.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3677 89999985 4 6678888887766 88877765542 222233 444563210 146
Q ss_pred CHhhhhccCCeEEEec
Q 007951 171 DIYETISGSDLVLLLI 186 (583)
Q Consensus 171 d~~Eav~~ADIVILav 186 (583)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999864
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.20 E-value=9.4 Score=40.55 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=54.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--C--ceec-CCCcCCHhhhhcc
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGTLGDIYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~--G--~~~~-d~t~~d~~Eav~~ 178 (583)
+.++. .||.|+|.|+.|.|.|..+.-+ |+ ++.+.+-...+..-++... | |... .-+....-.+.++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 34445 8999999999999999988876 65 4433333322222222221 1 2100 0001112245678
Q ss_pred CCeEEEeccchHH------------HHHHHHHHhcC---CCCcEEEEe
Q 007951 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~------------~~Vl~eI~~~L---k~GaiL~~a 211 (583)
+++||+..--.+. .++++.|.|.+ .|++++.++
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvv 136 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVV 136 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999996542222 34555555544 567765544
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.19 E-value=6.9 Score=42.02 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=55.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d---~~Eav~~ADIVIL 184 (583)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|...- + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 46 8999999999999999988887 88776655544444667777786320 0 011 1222335789888
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++.... .+.+....+++|-.++
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEE
Confidence 876432 2333344455555444
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.5 Score=42.98 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=45.7
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| +||++||- +++..|++..+..- |.++.+...++-.... .. .+.. ..++.|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~~-~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--MP-EYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--cc-ceEE----ECCHHHHhCCCCEEE
Confidence 4788 89999997 58999999998876 8887776543211000 00 1222 568899999999887
Q ss_pred Ee
Q 007951 184 LL 185 (583)
Q Consensus 184 La 185 (583)
.-
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 73
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=84.02 E-value=2.6 Score=46.23 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=43.9
Q ss_pred EEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999998 99987766443323333445677641 11223456789999873
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=83.71 E-value=6.5 Score=43.13 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=57.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---------CceecCCC----cCCHhhhh--
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYETI-- 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---------G~~~~d~t----~~d~~Eav-- 176 (583)
++|.|||+| .|.+....|+.. +..-++..+.++...+.|++. ++. +.. ..|..+.+
T Consensus 152 krVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHHHHh
Confidence 899999998 455554444433 343345666667777777752 111 000 23444433
Q ss_pred --ccCCeEEEeccchHH--------HHHHHHHHhcCCCCcEEEEecC
Q 007951 177 --SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 177 --~~ADIVILavpd~a~--------~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999998876422 4577788999999998765444
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=83.63 E-value=6.3 Score=40.75 Aligned_cols=90 Identities=20% Similarity=0.170 Sum_probs=54.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceec-CCCcCCH---hhhhc--cCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~---~Eav~--~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |.+ |++. ..++...+.+++.|+... +....+. .+... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988887 887 6554 444455677888886320 1000111 12222 5789
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9888876543 223333455555444
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.60 E-value=13 Score=36.11 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=55.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhh-----hccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Ea-----v~~ADI 181 (583)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. +...+.+.+.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999888877 8777655544 344566666664310 1001112221 246899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+.++... ..+..+...++++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99988863 2334444555565554433
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=83.59 E-value=2 Score=46.09 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=41.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVIL 184 (583)
++|+|||.|-.|.-+++.+++. |+++++.+....... ....+.....+ ..| +.++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~~~--~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIVAD--YDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEecC--CCCHHHHHHHHhcCCEEEe
Confidence 7899999999999999999987 999877655422211 11122222101 223 4557788888743
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=3.4 Score=45.10 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=43.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+.+ ++|.|||+|-.|.+.+.-|++. |++|.+.+...........+.|+.... -....+.+++.|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 346 8999999999999999888888 998766554322211112234764311 01223456778977763
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=8.5 Score=37.67 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.0
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+++ ++|.|.|. |-+|.++++.|.+. |++|++..|..
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999988 99887766653
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=83.48 E-value=1.5 Score=44.38 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.1
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---Hhhhh------cc-CCe
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav------~~-ADI 181 (583)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789997 99999999999988 999888887644321 1222110001222 33455 45 899
Q ss_pred EEEeccc
Q 007951 182 VLLLISD 188 (583)
Q Consensus 182 VILavpd 188 (583)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988774
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=83.42 E-value=3.5 Score=43.80 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=48.8
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||-+ ++..+++..+... .|.++.+...+. +...+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 3788 899999976 5789988887653 167776665432 233455555564321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.35 E-value=7.8 Score=42.19 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH----------hhhhc-cCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS-GSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~----------~Eav~-~AD 180 (583)
.+++|+|+|-+|.|-.++++.. |-..+++.+.+....+.|++.|... +.+. .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999987 7767788888888899999999864 2221 22233 688
Q ss_pred eEEEeccchH
Q 007951 181 LVLLLISDAA 190 (583)
Q Consensus 181 IVILavpd~a 190 (583)
.+|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 8888876543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=4.5 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=30.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~ 225 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDAN 225 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecC
Confidence 3456 8999999999999999999998 8888777653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=83.13 E-value=8.7 Score=38.28 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=56.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCCHhhh--hccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea--v~~ADIVIL 184 (583)
-+| .+|.|.|.|.+|.+..+-++.. |.+ |++ .+.+++..+.+.+.|.. +......... -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVG-VDPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-ECCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999998888877 877 544 44444456688887721 1111111111 135899998
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344555566666555443
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.07 E-value=39 Score=35.31 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.8
Q ss_pred CEEEEEccchhHHHHHHHHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLR 131 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr 131 (583)
-|||||=+||+|.++...|.
T Consensus 3 vKiGiiKlGNig~s~~idl~ 22 (277)
T PRK00994 3 VKIGIIKLGNIGMSPVIDLL 22 (277)
T ss_pred EEEEEEEecccchHHHHHHH
Confidence 58999999999999987776
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.94 E-value=10 Score=37.55 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=50.3
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE-e
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-L 185 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-a 185 (583)
++| |++.|+|. |-+|.++++.|.+. |.+|++..+..++..+.....+ ...+.+ .
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~Dl 60 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCDV 60 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEecC
Confidence 567 89999995 79999999999988 9887765554322221111111 111111 2
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+....++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 34455566777776655433467777775
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.81 E-value=2.3 Score=47.02 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=28.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi 144 (583)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 46888 9999999999999999999988 88876
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=82.80 E-value=4.2 Score=45.06 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 3467 8999999999999999999988 9888777654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=82.71 E-value=3.5 Score=45.51 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.3
Q ss_pred hcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc--CceecCCCcCCHhhh
Q 007951 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (583)
Q Consensus 108 l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~--G~~~~d~t~~d~~Ea 175 (583)
++| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... +... ..+..++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 2344455556555 8888776553 23333322 1332 5789999
Q ss_pred hccCCeEEEeccchHHHHHH
Q 007951 176 ISGSDLVLLLISDAAQADNY 195 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~Vl 195 (583)
+++||+|++++..+...++=
T Consensus 374 ~~~aDaivi~tew~ef~~~d 393 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLD 393 (414)
T ss_pred HhhCCEEEEeccHHHHhccC
Confidence 99999999999988877644
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=3.9 Score=45.72 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 45789 9999999999999999999887 887665433
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.45 E-value=4.6 Score=41.30 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=44.8
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH--HHHHH-cC------ceecCCC-cCCHhhhhc
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~--~~A~~-~G------~~~~d~t-~~d~~Eav~ 177 (583)
+| ++|.|.| .|-+|..++..|.+. |++|++..+...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999998 998876666533211 11111 11 1111100 123456778
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999888764
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.3 Score=44.85 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcC-CceEEEEecCCcccHHHHHHcC-----ceecCCCcCCHhhhhccCCeEEEec
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~-G~~ViVg~r~~s~s~~~A~~~G-----~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
-..|+|.|.|+..+...-.+. .. =.+|.++++..+.+.+.|.... +..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 468999999999987665543 11 1278899999887777777221 1110111456789999999999998
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCchhh
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~ 217 (583)
+...- ++ ....++||+.|-.+.+|+.+
T Consensus 216 lsteP--il--fgewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEP--IL--FGEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCc--ee--eeeeecCCceEeeeccCCch
Confidence 85321 11 13467899989888888744
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=82.31 E-value=20 Score=39.90 Aligned_cols=172 Identities=20% Similarity=0.139 Sum_probs=97.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH--HHHHHc--Cceec----------------CCCcC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTLG 170 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~--~~A~~~--G~~~~----------------d~t~~ 170 (583)
.+|-|+|.|..+--+|..++.. +- +|-+..|.+.++. -.+.+. +.... |....
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~ 75 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQ 75 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhc
Confidence 5789999999999999999975 32 4444456543333 222222 22110 11134
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHHh-cCCC-CcEEEEecCchhhhhhcccc-cCCCCccEEEe----------cc
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIFS-CMKP-NSILGLSHGFLLGHLQSMGL-DFPKNIGVIAV----------CP 237 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~~-~Lk~-GaiL~~a~G~~i~~ie~~~i-~~p~dv~VI~v----------~P 237 (583)
+.+++..+=|.+|||||-++..+|+++|.+ .|+. ..+|.++..|..+.+-+..+ ....++.||.. .+
T Consensus 76 ~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 76 DYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred CHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 566777788999999999999999997643 2333 23566666554332211001 12336777642 22
Q ss_pred CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc-ccccchhhhhh
Q 007951 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYR 299 (583)
Q Consensus 238 ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~-vieTtf~eE~~ 299 (583)
..|-.+.-...+ -..++. ..+.....++....+++.+|-.- +..+-+..|.+
T Consensus 156 ~~~~~vlt~~vK---------~kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 156 EQPNRVLTTAVK---------KKIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred CCcceehhhhhh---------ceEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 333333221221 122233 34556678888899999999753 34444455544
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.28 E-value=4.5 Score=43.59 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=48.9
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| .||++||= +++..+++..|... .|.++.+....+ ....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988776533 167776665432 233455556564321 146889999999
Q ss_pred CeEEEe
Q 007951 180 DLVLLL 185 (583)
Q Consensus 180 DIVILa 185 (583)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=82.22 E-value=7.1 Score=38.65 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.1
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.++| |+|.|+|. |.+|.++++.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 4678 99999995 89999999999988 8887766554
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=5.4 Score=39.47 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=52.2
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe-
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa- 185 (583)
++| |++.|+|. |-+|.++++.|.+. |++|++..|..+...+...+ + .+.....++.++.
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~--l----------~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDE--L----------AEEFPEREVHGLAA 67 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHH--H----------HhhCCCCeEEEEEC
Confidence 578 99999995 79999999999988 99887776653322111111 1 1111122333331
Q ss_pred --ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 --vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..+..+...++++...+.+=.+|+..+|.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23444556667766655444467777775
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=81.99 E-value=3.4 Score=45.74 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=62.4
Q ss_pred hhhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh
Q 007951 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea 175 (583)
+.++| ++|+|.|+ .+-+..++..|++. |.+|.+.+..-.. ....+..|... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCccc----c-h-hhh
Confidence 34678 99999998 57788888888887 9888876553111 11112334321 1 1 235
Q ss_pred hccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++||+|+++|.-....++ ++.+...++...+|+|.-++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 6789999999998777643 55666666644577786554
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.97 E-value=8.4 Score=40.15 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=35.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
.| .+|.|.|.|.+|...++-++.. |.++++....++...+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 46 8999999999999999988887 88644444444445667777775
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.72 E-value=10 Score=40.16 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=55.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEec
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t-~~d~~Eav~~ADIVILav 186 (583)
.| .++.|+|.|.+|...++-++.. |.++++..+.+++....+++.|...- +.. .....+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 56 8899999999999999888887 88776665554443344455776310 000 001122223578998888
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
... ..++.....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 742 2333444556666655433
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=81.64 E-value=12 Score=39.37 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=55.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~E----av--~~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988877 87533444444556788888886310 101112212 22 14788
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+-++... ..+.+....+++|-.++..
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 88887642 2233333455665555433
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.58 E-value=4.9 Score=44.77 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.++| +||++||- +++..|++..+... .|.++.+..... +...+.+.+.|.... .+.++.|++++|
T Consensus 238 ~l~G-~kIa~vGD~~~~rv~~Sl~~~la~~-----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDG-AHIALVGDLKYGRTVHSLVKLLALY-----RGLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGA 309 (429)
T ss_pred CcCC-CEEEEECcCCCChHHHHHHHHHHHh-----cCCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCC
Confidence 3788 99999998 48899999887542 177776654432 223345555564321 146889999999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9999843
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=81.56 E-value=4.9 Score=43.70 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=46.5
Q ss_pred hcCCCEEEEEccc--------hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCC
Q 007951 108 FNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGD 171 (583)
Q Consensus 108 l~gikkIgIIG~G--------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d 171 (583)
++| +||+|+|.| ++..|++..+..- |.++.+..... +...+. +.+.|.... ...+
T Consensus 168 l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d 238 (357)
T TIGR03316 168 LKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVNS 238 (357)
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEcC
Confidence 678 899999853 4557777777765 88877765442 222233 334564310 1568
Q ss_pred HhhhhccCCeEEEec
Q 007951 172 IYETISGSDLVLLLI 186 (583)
Q Consensus 172 ~~Eav~~ADIVILav 186 (583)
.+|++++||+|..-.
T Consensus 239 ~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 239 MDEAFKDADIVYPKS 253 (357)
T ss_pred HHHHhCCCCEEEECC
Confidence 899999999999864
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=81.50 E-value=11 Score=39.97 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.++...+.+++.|...- +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 7999999999999999888877 87 4544 4444556778888886320 100011112121 4788
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||-++.... .+......++++-.++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 888875321 2333333455554443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.48 E-value=7.7 Score=38.83 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=50.8
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++| ++|.|.|. |-+|.++++.|.+. |++|++..|+.++..+.+.+.+ . .+ .-.+|+ .
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~---------~~-~~~~D~----~ 60 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAELG-L---------VV-GGPLDV----T 60 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhc-c---------ce-EEEccC----C
Confidence 457 89999996 78999999999988 9988777664332212121111 0 00 012332 2
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
.++...++++++...+.+=.+|+..+|+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 34455566776665443334677777763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=12 Score=37.12 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.7
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..+.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3678 99999997 89999999999988 9888776654
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=5.2 Score=45.70 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
-++ ++|.|||.|..|.+.|..|++. |++|.+..+.
T Consensus 281 ~~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~ 315 (604)
T PRK13984 281 KKN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESL 315 (604)
T ss_pred cCC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 356 8999999999999999999998 9888776543
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=81.29 E-value=4.6 Score=42.78 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=47.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhcc
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
++| .||++||- ++...|++..+..- |.++.+...+. ....+. +.+.|.... ...+.++++++
T Consensus 146 l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVKG 216 (304)
T ss_pred CCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhCC
Confidence 678 89999996 68888888888776 88877765432 111222 344553210 14688999999
Q ss_pred CCeEEEe
Q 007951 179 SDLVLLL 185 (583)
Q Consensus 179 ADIVILa 185 (583)
||+|...
T Consensus 217 aDvvy~~ 223 (304)
T TIGR00658 217 ADVIYTD 223 (304)
T ss_pred CCEEEEc
Confidence 9999985
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=81.05 E-value=6.1 Score=44.17 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=30.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.-.+ ++|.|||.|..|.+.|..|++. |++|++..+.
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~ 175 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFERE 175 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecC
Confidence 3456 8999999999999999999998 8888777543
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=2.2 Score=45.62 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=29.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 6899999999999999999998 89988877653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=80.89 E-value=5.7 Score=41.85 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=47.6
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-H--Hc---Cc--eecCCC-cCCHhhh
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-R--AA---GF--TEENGT-LGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-~--~~---G~--~~~d~t-~~d~~Ea 175 (583)
..+++ |+|.|.|. |-+|..++..|.+. |++|++..|..+...... . .. .+ ...|-+ ..+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 34577 89999997 99999999999998 998876666433211110 1 11 11 111100 1124567
Q ss_pred hccCCeEEEeccc
Q 007951 176 ISGSDLVLLLISD 188 (583)
Q Consensus 176 v~~ADIVILavpd 188 (583)
++++|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 7889999988643
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.80 E-value=3.1 Score=43.94 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=96.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.|+-|=| .|.||.-+...+++. |.+++.+...+.-.. . -.|..+ +.+.+|+++ ++|+-++.+|+
T Consensus 9 tkvivqGitg~~gtfh~~~~l~y------Gt~~V~GvtPgkgG~-~--~~g~PV----f~tV~EA~~~~~a~~svI~Vp~ 75 (293)
T COG0074 9 TKVIVQGITGKQGTFHTEQMLAY------GTKIVGGVTPGKGGQ-T--ILGLPV----FNTVEEAVKETGANASVIFVPP 75 (293)
T ss_pred CeEEEeccccccchHHHHHHHHh------CCceeecccCCCCce-E--EcCccH----HHHHHHHHHhhCCCEEEEecCc
Confidence 5666777 589999999999988 887666655432110 0 023332 345667664 58999999998
Q ss_pred hHHHHHHHH-HHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhcc----ccccCCCceEEE
Q 007951 189 AAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG----KEINGAGINSSF 263 (583)
Q Consensus 189 ~a~~~Vl~e-I~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G----~e~~G~Gv~ali 263 (583)
....+-+-| |...++ .+++++-|+.++..-..... -+...+..+=||+||-.....+.-| ..+. .|--.++
T Consensus 76 ~~aadai~EAida~i~--liv~ITEgIP~~D~~~~~~~-a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~-~G~IGiV 151 (293)
T COG0074 76 PFAADAILEAIDAGIK--LVVIITEGIPVLDMLELKRY-AREKGTRLIGPNCPGIITPGECKIGIMPGNIYK-PGNIGIV 151 (293)
T ss_pred HHHHHHHHHHHhCCCc--EEEEEeCCCCHHHHHHHHHH-HHhcCCEEECCCCCccCcCCcceeeechhhhcc-CCceEEE
Confidence 877765544 433232 26779999975533210001 1223456667999998865433322 1111 3455555
Q ss_pred eecCCCCHHHHHHHHH------HHHHhCCCcccccchhhhhhh
Q 007951 264 AVHQDVDGRATNVALG------WSVALGSPFTFATTLEQEYRS 300 (583)
Q Consensus 264 Av~qd~sgeale~a~a------la~aIG~~~vieTtf~eE~~s 300 (583)
.-+...+-|....... .+.+||...+.-|+|.+..+.
T Consensus 152 SrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~ 194 (293)
T COG0074 152 SRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEM 194 (293)
T ss_pred ecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHH
Confidence 5444444443333221 122345545777777765433
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=8.7 Score=41.20 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=50.5
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hh-hhcCCceEE-EEecCCc---------ccH-HHHHHcCceec--C--C-CcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~-~~g~G~~Vi-Vg~r~~s---------~s~-~~A~~~G~~~~--d--~-t~~d 171 (583)
.+|+|+|+|++|..+++-|.+. +. ..|..++|+ |.+++.. ..+ +...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773 11 122224433 2232210 111 11111221100 0 0 0125
Q ss_pred Hhhhh--ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 172 ~~Eav--~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..|.+ .++|+||=++.+....+++.+. ++.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66666 4799999999877666666543 44565443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.54 E-value=9.2 Score=38.22 Aligned_cols=86 Identities=21% Similarity=0.100 Sum_probs=50.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+++ +++-|.|. |-+|.++++.|.+. |.+|++..|+.++..+.+.+.+-. ...+ .+|+ .
T Consensus 4 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~-~~Dl----~ 62 (261)
T PRK08265 4 LAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDADNGAAVAASLGER---------ARFI-ATDI----T 62 (261)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCe---------eEEE-EecC----C
Confidence 567 89999996 78999999999988 998877766533222222221100 0000 1222 3
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+....++++++...+.+=.+|+..+|.
T Consensus 63 ~~~~~~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 63 DDAAIERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3445556777766554333356666664
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=80.53 E-value=8.7 Score=40.27 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~ 162 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ ++...+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 46 8999999999999999998887 887655444 4445677787776
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=80.37 E-value=3.5 Score=41.98 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=55.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCC-Hhhh-----hccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYET-----ISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~~Ea-----v~~ADI 181 (583)
.|++|||-||+|.-+..-+.++ |- .+.+|.+..+.-..+|.+.|+.. ... .+-+ .++-|+
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~t----t~egv~~ll~~p~~~di~l 74 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVAT----THEGVIGLLNMPEFADIDL 74 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcc----hhhHHHHHHhCCCCCCcce
Confidence 5899999999999987776665 42 56788888888888888888863 111 1111 245569
Q ss_pred EEEeccchHHHHHHHHHH
Q 007951 182 VLLLISDAAQADNYEKIF 199 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~ 199 (583)
||=+++-..+.+-...++
T Consensus 75 vfdatsa~~h~~~a~~~a 92 (310)
T COG4569 75 VFDATSAGAHVKNAAALA 92 (310)
T ss_pred EEeccccchhhcchHhHH
Confidence 999999888876555443
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.34 E-value=9.7 Score=38.95 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh-hhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-av~~ADIVILav 186 (583)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+.+.|... ..+..+ .-+..|+++.+.
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 345 7999999999999998888877 88876655544 4456667777632 111111 123578888876
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 346666667777665543
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=80.24 E-value=2.7 Score=42.67 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+|.|||.|.-|.+.|..|.+. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 689999999999999999999 99998887753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=3.1 Score=47.97 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.2
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~ 152 (583)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|..++
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 34456 88999995 89999999999988 9998877776443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=80.09 E-value=9.9 Score=39.59 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=56.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCceec-CCCcCCHhhh-hccCCe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEE-NGTLGDIYET-ISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~~~-d~t~~d~~Ea-v~~ADI 181 (583)
..| ++|.-||+|+-. ++..+... |..-+++.+.++...+.|++ .++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~--lai~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGI--LSIAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhH--HHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 356 899999999933 33444444 54345677776665555554 232100 0001111111 136799
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+.-........+++++...|+||..++++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987665556667888899999999876544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 583 | ||||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 0.0 | ||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 0.0 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 8e-22 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 6e-09 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 7e-09 |
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 583 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 0.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 4e-46 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 2e-42 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 732 bits (1892), Expect = 0.0
Identities = 452/511 (88%), Positives = 481/511 (94%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 374
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFM 491
E+VRSTRP DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFM
Sbjct: 375 EKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFM 434
Query: 492 HARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHG 551
HARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHG
Sbjct: 435 HARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHG 494
Query: 552 AIEVCAQLRPTVDISVPPDADFVRPELRQGS 582
AIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct: 495 AIEVCAELRPTVDISVPANADFVRPELRQSS 525
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-46
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-42
Identities = 92/426 (21%), Positives = 163/426 (38%), Gaps = 60/426 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TG--IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCM-EILYECYEDVAAGSEIR 399
G I++ + G+ + + S + + +AY+ S + EI+ ++ +I
Sbjct: 256 FGWETITEALKQGGITLMMDRLS--NPAKL-RAYALS--EQLKEIMAPLFQKHMD--DII 308
Query: 400 SVVLAGRRF---YEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAA 456
S + + + + ++ + + + A
Sbjct: 309 SGEFS-SGMMADWANDDKKLLTWREETGKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKA 367
Query: 457 LMMAQIEILRKKGHS----YSEIINES-VIESVDSLNPFMHARGVSFMVDNCSTTARLGS 511
+ E + G Y E ++E +I ++ + + + M S TA G+
Sbjct: 368 GVELAFETMVDSGIIEESAYYESLHELPLI--ANT----IARKRLYEMNVVISDTAEYGN 421
Query: 512 RKWAPR 517
++
Sbjct: 422 YLFSYA 427
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 70/565 (12%), Positives = 158/565 (27%), Gaps = 179/565 (31%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
DN++ + +C K +I+ S L L+ P R+++ +
Sbjct: 344 WDNWKHV-NCDKLTTIIESS----LNVLE----------------PAEY----RKMFDR- 377
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALG--WSVALGS-PFTFATTLEQEYRSDIFGERGI 308
+V + L W + S L + S + +
Sbjct: 378 -----------LSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKE 423
Query: 309 LLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
++ ++ NE +++ V+ YN D
Sbjct: 424 STISIPS----IYLELKVKLENEYALHRSIVDH-----------------YNIPKTFDSD 462
Query: 369 EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMW 428
+ Y Y+ I + L E+ L F M +D R +
Sbjct: 463 DLIPPYLDQYF-YSHIGHH---------------LKNIEHPERMTL--FRMVFLD-FR-F 502
Query: 429 KVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEII--NESVIES-VD 485
+ +++R H TA + ++ ++ L+ Y I N+ E V+
Sbjct: 503 -LEQKIR-----------HDSTAWNASGSILNTLQQLKF----YKPYICDNDPKYERLVN 546
Query: 486 SLNPFMHARGVSFMVDNCSTTARLG 510
++ F+ + + + R+
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIA 571
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 100.0 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.97 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.95 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.89 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.86 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.85 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.85 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.8 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.78 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.78 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.77 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.77 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.74 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.73 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.63 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.59 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.55 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.53 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.52 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.5 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.49 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.49 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.47 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.47 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.46 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.45 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.45 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.44 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.43 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.42 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.41 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.4 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.39 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.38 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.38 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.38 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.37 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.37 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.36 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.35 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.34 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.34 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.34 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.33 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.33 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.33 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.31 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.31 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.3 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.29 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.29 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.28 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.28 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.26 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.26 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.26 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.25 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.24 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.23 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.22 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.21 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.2 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.83 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.19 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.16 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.15 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.15 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.13 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.12 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.1 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.1 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.09 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.05 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.04 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.04 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.98 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.97 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.96 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.96 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.95 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.95 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.95 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.93 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.92 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.91 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.91 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.91 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.9 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.9 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.89 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.89 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.88 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.88 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.87 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.85 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.85 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.84 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.84 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.82 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.82 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.81 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.8 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.8 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.8 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.8 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.73 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.72 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.71 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.71 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.71 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.69 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.65 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.64 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.64 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.62 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.61 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.6 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.58 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.56 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.55 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.49 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.49 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.46 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.45 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.41 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.39 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.39 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.39 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.38 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.37 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.34 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.33 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.28 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.27 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.26 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.26 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.17 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.14 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.14 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.13 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.12 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.09 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.07 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.07 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.06 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.06 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.05 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.05 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.05 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.99 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.99 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.99 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.98 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.98 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.95 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.95 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.95 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.94 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.94 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.93 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.91 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.91 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.9 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.89 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.85 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.85 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.85 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.81 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.81 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.8 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.79 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.78 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.77 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.76 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.75 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.74 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.74 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.74 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.73 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.71 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.7 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.67 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.66 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.66 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.66 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.65 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.61 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.61 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.6 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.6 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.59 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.57 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.56 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.55 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.54 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.52 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.5 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.5 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.5 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.46 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.42 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.41 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.41 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.38 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.37 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.36 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.36 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.35 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.33 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.3 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.3 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.29 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.27 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.27 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.27 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.27 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.27 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.25 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.25 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.22 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.21 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.18 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.18 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.17 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.16 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.15 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.14 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.13 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.11 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.08 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.05 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.05 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.03 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.02 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.02 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.02 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.01 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 96.98 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.97 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.97 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.96 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.94 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.9 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.83 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.82 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.81 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.79 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.76 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.73 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.73 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.72 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.71 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.7 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.7 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.69 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.68 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.64 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.62 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.59 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.58 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.56 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.56 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.54 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.53 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.49 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.47 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.43 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.41 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.41 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.35 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.31 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.31 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.29 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.27 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.15 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.14 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.1 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.09 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.09 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.08 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.05 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.03 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.99 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.99 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.98 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.97 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.94 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.93 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.93 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 95.8 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.77 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.74 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.72 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.5 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 95.47 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.42 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 95.42 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.4 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.37 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.37 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.32 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.28 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.24 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.22 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.19 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.16 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.14 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.04 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.81 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 94.68 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.65 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 94.63 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 94.61 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 94.59 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 94.58 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.38 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.33 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 94.21 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.21 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.04 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.91 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.86 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 93.85 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 93.73 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.69 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 93.64 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.58 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 93.52 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 93.46 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.4 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 93.37 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 93.36 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.23 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.08 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 92.98 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 92.89 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.85 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 92.84 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 92.78 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 92.68 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.61 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 92.59 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 92.56 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.56 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.36 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 92.36 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 92.34 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 92.33 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 92.26 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.24 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.17 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 91.98 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 91.97 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 91.97 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 91.87 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.86 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 91.83 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 91.71 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 91.71 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 91.7 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 91.67 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 91.67 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.65 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 91.64 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.58 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 91.54 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 91.53 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.48 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 91.29 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 91.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.25 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.23 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 91.1 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 91.03 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.02 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 91.01 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.99 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 90.79 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.76 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 90.71 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.67 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.6 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 90.55 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 90.53 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.42 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.4 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 90.35 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 90.35 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 90.35 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 90.28 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 90.28 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 90.22 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.21 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 90.13 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 90.1 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 90.03 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 90.03 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 90.01 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 89.85 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 89.78 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 89.69 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 89.65 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 89.62 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 89.55 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 89.49 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 89.46 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.42 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 89.31 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 88.96 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 88.95 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 88.93 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 88.88 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 88.87 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 88.85 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 88.74 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 88.71 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.64 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 88.64 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 88.62 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 88.61 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.6 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 88.59 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.5 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 88.48 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 88.47 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 88.45 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.45 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 88.41 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.34 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.33 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.31 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.24 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 88.17 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 88.16 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 88.07 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 88.04 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 88.01 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 87.97 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 87.96 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 87.95 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 87.89 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 87.82 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 87.74 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 87.67 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 87.66 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 87.6 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 87.42 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 87.36 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 87.32 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.25 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 87.2 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 87.18 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 87.16 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 87.12 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 86.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 86.91 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 86.87 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 86.84 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.83 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 86.77 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 86.75 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 86.65 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 86.65 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 86.48 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 86.47 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 86.37 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 86.32 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 86.32 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 86.24 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 86.12 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 86.06 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 85.99 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 85.82 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 85.81 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 85.76 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 85.69 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 85.66 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.62 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 85.58 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 85.55 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 85.55 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 85.5 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 85.24 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.15 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 85.14 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 85.02 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 85.01 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 84.86 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 84.86 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 84.85 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.6 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 84.51 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 84.26 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 84.24 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-153 Score=1235.47 Aligned_cols=515 Identities=88% Similarity=1.351 Sum_probs=481.5
Q ss_pred CccccccccchhhhhhhhcccccceeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEe
Q 007951 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (583)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~ 147 (583)
++++++|||++|.+++++|+|++|+||+||||+|++++++|+|||||||||+|+||+++|++|+++++++|+|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 45779999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCC
Q 007951 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (583)
Q Consensus 148 r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p 227 (583)
+.++++++.|.+.|+...++++.++.|++++||+|||++||+.+.+++++|.++|++|++|+++|||+++++++.++.+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888999999999984233446899999999999999999999999999999999999999999999999876677889
Q ss_pred CCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh
Q 007951 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (583)
Q Consensus 228 ~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt 307 (583)
++++|||+|||+|++.||++|.+|+++||+|+|++|++++|+++++++++++|++++|++++++|||++|+++||||+|+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhHHHHHHH
Q 007951 308 ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (583)
Q Consensus 308 vLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~~~~m~e 387 (583)
+|||++|++|+++||++|++||||++||++|+|+++++|++||+++|+.+|+++||||++++||++|...+.|+|++|++
T Consensus 251 vLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~ 330 (525)
T 3fr7_A 251 ILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYE 330 (525)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999967999999999999999999999999999988878999999999
Q ss_pred HHHhccCChhhhHHHHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 007951 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRK 467 (583)
Q Consensus 388 ~~~~I~sG~far~~~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~~~~g~~~~~~~a~~~~l~~ 467 (583)
+|++||+|+|+|+|+++|+++||++|+|.|++++|++|+|||||++||++||++++|||+|||+|||||+||||||+||+
T Consensus 331 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vr~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (525)
T 3fr7_A 331 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRK 410 (525)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSTTSHHHHHHHHHHHHCCTTCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcCccchhccccccchhhhcccHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHHHHHHHhhhccCCccchhhHHhhhcC
Q 007951 468 KGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSD 547 (583)
Q Consensus 468 ~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 547 (583)
|||||||+|||||||+|||||||||+|||||||||||||||||+|||+|||||+|.||+|++|++|+|++++|+++|++|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (525)
T 3fr7_A 411 KGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSD 490 (525)
T ss_dssp TTCCHHHHHHHHTHHHHHTHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCCHHHHHHHHHC
T ss_pred cCCCHHHHhhhHHHHHHHhhhhhhhhhhhHHHHhhccHhhhcccccchHhHHHHHHHHhHHHhhcCCcchHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCcceeecCCCCCcchhhhhccC
Q 007951 548 PVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 582 (583)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (583)
|||+||++|++|||+|||||.++++++|+++||++
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (525)
T 3fr7_A 491 PVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 525 (525)
T ss_dssp THHHHHHHHHTTSCSSCCC----------------
T ss_pred hHHHHHHHHHhcCCCceEeecCCccchhhhhhccC
Confidence 99999999999999999999999999999999985
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-93 Score=757.71 Aligned_cols=440 Identities=25% Similarity=0.349 Sum_probs=391.3
Q ss_pred ccccccchhhhhhhh-----cccccceeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE
Q 007951 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (583)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV 145 (583)
.|||||++||+|+.+ ||+++| |++..++|+| |||+|||||+||++||+||||| |++|+|
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~e---------F~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDE---------FADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGG---------GTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHH---------hcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 499999999999887 787777 9999999999 9999999999999999999999 999999
Q ss_pred EecCCc-----ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 007951 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (583)
Q Consensus 146 g~r~~s-----~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie 220 (583)
|+|+++ +||++|.++||. +.++.|++++||+|++++||..|.++|++|.|+||+|++|.++|||++++.
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~- 139 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV- 139 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT-
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc-
Confidence 999544 899999999999 578999999999999999999999999999999999999999999999874
Q ss_pred cccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 007951 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (583)
Q Consensus 221 ~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~--qd~sgeale~a~ala~aIG~~~--vieTtf~e 296 (583)
++.||+|++||+|+||+||+.||++|++| +|+|++|+|| ||+++++++++++|+.++|++| +++|||++
T Consensus 140 --~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 140 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp --CCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred --ccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 56999999999999999999999999995 7999999998 8999999999999999999985 89999999
Q ss_pred hhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcc
Q 007951 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (583)
Q Consensus 297 E~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~ 376 (583)
|+++||||||++|||+++++++++||++|++||+|++||+++.+++ ++|+++|+++|+.+|+++||| |++||.|...
T Consensus 213 EtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~~~e~-klIvdli~egGi~~M~~siS~--TAe~G~~~~~ 289 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGW-ETITEALKQGGITLMMDRLSN--PAKLRAYALS 289 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSCH--HHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hHHHHHHHhCCHHHHHHhcCc--hhhccchhhh
Confidence 9999999999999999999999999999999999999999988887 589999999999999999997 7789998543
Q ss_pred -cc-hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc-chhhhcChHHHHHHHHHccCCC--CCCCCCCcchh
Q 007951 377 -SY-YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-MGKIDQTRMWKVGERVRSTRPA--GDLGPLHPFTA 451 (583)
Q Consensus 377 -~~-~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~-~~~i~~~~ie~vG~~lR~~~~~--gei~~~~~~~~ 451 (583)
.. +.++++|+++|++|+||+|+|+|+.+++ .|.+.|. ++ |+.++..+..+|+ ++|++|+|||+
T Consensus 290 ~~~~~~~k~~~~~~l~~I~sG~Fa~~~~~e~~-----~g~~~l~~~R-------~~~~~h~iEk~~~~~~~I~~qe~f~~ 357 (491)
T 3ulk_A 290 EQLKEIMAPLFQKHMDDIISGEFSSGMMADWA-----NDDKKLLTWR-------EETGKTAFETAPQYEGKIGEQEYFDK 357 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTTHHHHHHH-------HHHHHSHHHHCCCCCSCCCHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH-----cCChhHHHHH-------HHhcCCccccCcccccCCCcccchhh
Confidence 22 3478889999999999999999999865 3556554 32 5555555556665 68999999999
Q ss_pred HHHHHH-HHHHHHHHHHhCCChhhhhhhhH-HHHhhhcchhhh----hccchhhhhhcchhhhccccccccchhHHHHHH
Q 007951 452 GVYAAL-MMAQIEILRKKGHSYSEIINESV-IESVDSLNPFMH----ARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQ 525 (583)
Q Consensus 452 g~~~~~-~~a~~~~l~~~gh~~se~~ne~~-~e~~~sl~p~~~----~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~~~~ 525 (583)
||||+. ++|++|+ .+..++-+++..|+. +|++|+| |||. ++|+++|+.+||+||+||.|.|.|+.++.+ ++
T Consensus 358 Gilmva~v~a~ve~-~FEtlveaGy~pE~AYfE~LHEl-kLIvdli~e~gl~~M~~sISdTAEYG~yl~~~~~k~~m-k~ 434 (491)
T 3ulk_A 358 GVLMIAMVKAGVEL-AFETMVDSGIIEESAYYESLHEL-PLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLL-KP 434 (491)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHTTTCCHHHHHHTTGGGH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-HH
T ss_pred hhHHHHHHHHHHhh-hHHHHHHcCCcHHHHHHHHHhHH-HHHHHHHHHhhHHHHHhHhhhHhhhcCEEecHHHHHHH-HH
Confidence 999555 5599776 677777777778888 8999998 7754 599999999999999999999999999988 66
Q ss_pred HHhhhccC---C---------ccchhhHHhhhcChHHHHHHHHhccC
Q 007951 526 ALVAVDND---A---------PINGDLISNFLSDPVHGAIEVCAQLR 560 (583)
Q Consensus 526 ~~~~~~~g---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (583)
+...+++| + +....++++.++||+|. |+.+||
T Consensus 435 ~l~~Iq~g~fak~~~e~~~g~~~l~~~~~~~~~H~IE~---VG~~LR 478 (491)
T 3ulk_A 435 FMAELQPGDLGKAIPEGAVDNGQLRDVNEAIRSHAIEQ---VGKKLR 478 (491)
T ss_dssp HHHTCCTTSSSSCCCCCCCCHHHHHHHHHHHHTSHHHH---HHHHHH
T ss_pred HHHHccCChHhhhhhhccCCCHHHHHHHHHHhCCChhH---HHHHHH
Confidence 77788887 2 25567888999999985 677776
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=370.68 Aligned_cols=310 Identities=28% Similarity=0.487 Sum_probs=269.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+++ ++|+|||+|+||.++|++|+++ |++|+++++..+++++.+.+.|+.. . +..+++++||+||++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 56788 9999999999999999999998 8888888887666688888899864 3 888999999999999
Q ss_pred ccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 186 vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
+|+..+.++++ ++.+++++|++|++++|+++ .... +.++.+++|+++||++|++.++++|..| .|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999999999 99999999999999999987 4433 3346788999999999999999999874 79999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
++++.++++++.++.|++.+|..+ ++++++.+|++.|+|+++++|||++|+++...++.+++.|++++.||++++++.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~ 231 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL 231 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH
Confidence 999999999999999999999755 889999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhccc-c--hhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc-
Q 007951 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS-Y--YPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP- 418 (583)
Q Consensus 343 ~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~-~--~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~- 418 (583)
.++.++|..+|+..|+...|+ .++|++.+... . ...++.|+++++.|++|+|.++|+.+++ .+++.|.
T Consensus 232 -~~~~~~~~~gg~~~~r~a~s~--p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-----~~r~~~~~ 303 (338)
T 1np3_A 232 -KLIVDLMYEGGIANMNYSISN--NAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGA-----ANYPSMTA 303 (338)
T ss_dssp -HHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHH
T ss_pred -HHHHHHHHhcCHHHHHHhcCC--HHHHhhhhcCCccccHHHHHHHHHHHHHHhCCHHHHHHHHHHh-----cccHHHHH
Confidence 479999999999888655564 67899975331 1 4568899999999999999999999865 3556666
Q ss_pred ch-hhhcChHHHHHHHHHccCCCCCC
Q 007951 419 MG-KIDQTRMWKVGERVRSTRPAGDL 443 (583)
Q Consensus 419 ~~-~i~~~~ie~vG~~lR~~~~~gei 443 (583)
++ ++++|+||+||++||++|||.+-
T Consensus 304 ~~~~~~~~~~~~~g~~~r~~~~~~~~ 329 (338)
T 1np3_A 304 YRRNNAAHPIEQIGEKLRAMMPWIAA 329 (338)
T ss_dssp HHHHHHHSHHHHHHHHHHTTCTTC--
T ss_pred HHHHHhCCcHHHHHHHHHHhCccccc
Confidence 44 55899999999999999999864
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=256.52 Aligned_cols=221 Identities=16% Similarity=0.149 Sum_probs=188.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
+||+|||+|+||.+++++|.++ |+ +|++++++.++..+.+.+.|+.. ..++.++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7899999999999999999998 87 78887776655444444468875 56889999999999999999
Q ss_pred hHHHHHHHHHHhc-CCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 189 AAQADNYEKIFSC-MKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 189 ~a~~~Vl~eI~~~-Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
+...+++++|.++ ++++++ |++++|+++..++. .++.+.+|+++|||+|... |.|+.. +++.
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v------------~~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV------------RAGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG------------TCEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh------------cCccEE-EEeC
Confidence 9999999999998 888865 56889999887766 5566789999999999987 578887 5668
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
.+.+.++++.++.+++++|....+ .+| ++++..++|+|++|+ +++++.|++++.|++|++|++++.|++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v----~~E---~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~ 210 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWV----SSE---DQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTV 210 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEEC----SSH---HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEE----CCH---HHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999999963111 123 578888999999999 579999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.| .++|+.++|. ..++++|+.+.
T Consensus 211 ~G-~a~~~~~~~~~p~~l~~~v~spg 235 (280)
T 3tri_A 211 LG-AARMALETEQSVVQLRQFVTSPG 235 (280)
T ss_dssp HH-HHHHHHTCSSCHHHHHHHHCCTT
T ss_pred HH-HHHHHHhcCCCHHHHHHhccCCC
Confidence 99 9999999996 88999998763
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=233.81 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=173.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc----eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~----~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++++|.++ |+ +|++++++.++..+.+.+.|+.. ..++.|+++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999998 87 88877766444334444568875 5788999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 188 DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
|+...++++++.+++++|++| ++++|+++..++. .++.+.+++++||+.|... |+|... +++.
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g~~~-~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV------------GEGMSA-LCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG------------TCEEEE-EEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH------------cCceEE-EEeC
Confidence 999999999999999999865 5889998776655 4456789999999999877 467766 6667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
...+.++++.++.+++.+|.. +. ..| ++++..++++|++|+ ++|++.+++++.|+++++|++.+.+++
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~~--~~---~~e---~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQT--EI---VSE---KLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEEE--EE---CCG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EE---eCH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999999999963 22 123 567777899999998 689999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 343 TGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 343 ~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
.| .++|+.++|. ..|+++|+.+.
T Consensus 209 ~g-s~~~~~~~~~~p~~l~~~v~spg 233 (247)
T 3gt0_A 209 LG-SAKMVLETGIHPGELKDMVCSPG 233 (247)
T ss_dssp HH-HHHHHHHSCC-------------
T ss_pred HH-HHHHHHHcCCCHHHHHHhcCCCC
Confidence 98 9999999997 88999998754
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=207.14 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=173.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|||+|||+|+||.++|.+|.++ | ++|++.+|..+ ...+...+.|+.. ..+..++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 68877776543 2455556778875 467889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhcccccCC---CCccEEEeccCCCchhhHHhHhccccccCCCceEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFP---KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie~~~i~~p---~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~al 262 (583)
||+...+++++|.+.++++++|++. .|+.+..+++ .++ .+.+|++.||+.|... +.|...
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~---~l~~~~~~~~vv~~~p~~p~~~------------~~g~~v- 156 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEK---KLSAFRPAPRVIRCMTNTPVVV------------REGATV- 156 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHH---HHHTTSSCCEEEEEECCGGGGG------------TCEEEE-
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHH---HHhhcCCCCeEEEEeCCcHHHH------------cCCeEE-
Confidence 9999999999999999999987655 6887654433 111 2468999999998876 356644
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHH
Q 007951 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNT 338 (583)
Q Consensus 263 iAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~ 338 (583)
++...+.+.+..+.+..++..+|.. +. .. +|+++..++++|++|+ +++++.+.+++.|++++.++.++
T Consensus 157 ~~~g~~~~~~~~~~v~~ll~~~G~~--~~---~~---e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~ 228 (322)
T 2izz_A 157 YATGTHAQVEDGRLMEQLLSSVGFC--TE---VE---EDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLG 228 (322)
T ss_dssp EEECTTCCHHHHHHHHHHHHTTEEE--EE---CC---GGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCCE--EE---eC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5556677889999999999999953 11 12 3677888899999888 58999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCc
Q 007951 339 VECITGIISKIISTQGM--LAVYNSFSG 364 (583)
Q Consensus 339 ~q~l~Glia~li~e~G~--~~m~d~vS~ 364 (583)
.+++.| .++++.+.|. ..+++.++.
T Consensus 229 ~~~~~g-~~~~~~~~~~~p~~l~~~v~s 255 (322)
T 2izz_A 229 AQALLG-AAKMLLHSEQHPGQLKDNVSS 255 (322)
T ss_dssp HHHHHH-HHHHHHHCSSCHHHHHHHHCC
T ss_pred HHHHHH-HHHHHHhcCCCHHHHHHhCCC
Confidence 999988 7788877764 567777754
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-23 Score=220.88 Aligned_cols=130 Identities=17% Similarity=0.305 Sum_probs=112.4
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhhhcccchhH
Q 007951 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPC 381 (583)
Q Consensus 302 lfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~~~~~~~p~ 381 (583)
-|+....++.++.|+++++||++|++||+||.||++|+|+++ ||+++|+++|+.+|+..||| |||||+|... ..+
T Consensus 354 ~f~~Gilmva~v~a~ve~~FEtlveaGy~pE~AYfE~LHElk-LIvdli~e~gl~~M~~sISd--TAEYG~yl~~--~~~ 428 (491)
T 3ulk_A 354 YFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVISD--TAEYGNYLFS--YAC 428 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHTTGGGHH-HHHHHHHHHHHHHHHHHSCH--HHHHHHHHHH--HHH
T ss_pred chhhhhHHHHHHHHHHhhhHHHHHHcCCcHHHHHHHHHhHHH-HHHHHHHHhhHHHHHhHhhh--HhhhcCEEec--HHH
Confidence 465555458999999999999999999999999999999995 99999999999999999997 8899999321 346
Q ss_pred HHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCCCC
Q 007951 382 MEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 442 (583)
Q Consensus 382 ~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~ge 442 (583)
+..|++++++||+|.|+|++ .+++ .|.|.|. ++++++|+||+||++||++|||.+
T Consensus 429 k~~mk~~l~~Iq~g~fak~~-~e~~-----~g~~~l~~~~~~~~~H~IE~VG~~LR~~M~wmk 485 (491)
T 3ulk_A 429 VPLLKPFMAELQPGDLGKAI-PEGA-----VDNGQLRDVNEAIRSHAIEQVGKKLRGYMTDMK 485 (491)
T ss_dssp HHHTHHHHHTCCTTSSSSCC-CCCC-----CCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChHhhhh-hhcc-----CCCHHHHHHHHHHhCCChhHHHHHHHHhhHHHH
Confidence 77999999999999999994 5554 4667766 457799999999999999999975
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=184.47 Aligned_cols=215 Identities=13% Similarity=0.176 Sum_probs=167.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|||+|||+|+||.+++.+|.+. | ++|.+.++..++..+.+.+.|+.. ..+..+++ ++|+||+++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999998 8 888777665444333334458764 45677888 9999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-cCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
..++++++.+ + +++|++. .|+....+.+ .++.+..+++.+|+.|... +.|... +.+....
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~------------~~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH------------cCceEE-EEcCCCC
Confidence 8888887766 5 8887766 8887665554 4455678999999888776 456766 4556666
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 007951 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gl 345 (583)
+.+..+.+..++..+|.. + . .. +.|.++..++++|+.|+ +++++.+.+++.|++++.++..+.+++.|
T Consensus 131 ~~~~~~~~~~l~~~~g~~-~-~---~~--~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~- 202 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT-V-W---LD--DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG- 202 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE-E-E---CS--STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCE-E-E---eC--ChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Confidence 888999999999999953 1 1 11 13578888999888887 67788889999999999999999999988
Q ss_pred HHHHHHHhc--HHHHHHhcCc
Q 007951 346 ISKIISTQG--MLAVYNSFSG 364 (583)
Q Consensus 346 ia~li~e~G--~~~m~d~vS~ 364 (583)
..+++.++| ...+.+.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T 1yqg_A 203 AVALAEQTGEDFEKLQKNVTS 223 (263)
T ss_dssp HHHHHHHHCCCHHHHHHHTCC
T ss_pred HHHHHHhcCCCHHHHHHhcCC
Confidence 888998888 5677777764
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=184.17 Aligned_cols=210 Identities=13% Similarity=0.206 Sum_probs=163.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC----ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G----~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+||+|||+|+||.+++.+|.++ | ++|.++++..++ .|+.. ..+..++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 7899999999999999999988 8 678777665443 57764 5678889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
++...++++++.++++++.+|+++.|+....+++ .++.+.++++++|+.|... +.| ..+++...
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV------------GEG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG------------TCE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH------------cCC-eEEEEeCC
Confidence 9999999999999885555678899998766654 3455557889999888776 467 55567677
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~ 343 (583)
+.+.+..+.+..+++.+|. ++.. .+ +.++..++++++.|+ +++++.+.+++.|++++.++....+++.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~---~~---~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~ 203 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEI---KE---KDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIK 203 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEEC---CG---GGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEe---CH---HHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7788999999999999994 2222 12 456677888887776 6888888899999999999999999887
Q ss_pred HHHHHHHHHhcH--HHHHHhcC
Q 007951 344 GIISKIISTQGM--LAVYNSFS 363 (583)
Q Consensus 344 Glia~li~e~G~--~~m~d~vS 363 (583)
+ ..++..+.+. ..+.|.++
T Consensus 204 ~-~~~~~~~~~~~~~~l~d~~~ 224 (262)
T 2rcy_A 204 G-SVEMVKKSDQPVQQLKDNIV 224 (262)
T ss_dssp H-HHHHHHHCSSCHHHHHHHHC
T ss_pred H-HHHHHHhcCCCHHHHHHhcC
Confidence 6 6666655343 33444443
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=181.13 Aligned_cols=214 Identities=16% Similarity=0.152 Sum_probs=164.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|+|||+|.||.+++.+|.+. |++|.+.+++.++..+.+.+.|+.. ..+..++++++|+||+++|+..+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~~ 73 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 73 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred cEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHhH
Confidence 7999999999999999999987 8887776665443333444457764 56788999999999999999888
Q ss_pred HHHHHHHHhcCCCCcEEEEe-cCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 192 ADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
.+++.++ ++|++|+.. .|++...++. .++.+.++++.+|+.|... +.|... +.+....+
T Consensus 74 ~~v~~~l----~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~------------~~g~~~-i~~~~~~~ 133 (259)
T 2ahr_A 74 ETVLKPL----HFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 133 (259)
T ss_dssp HHHHTTS----CCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHHHHh----ccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH------------cCceEE-EEcCCCCC
Confidence 7777654 478776655 6787665544 3345668999999888776 456555 55666678
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGII 346 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Gli 346 (583)
.+..+.++.++..+|. ++.. .+ +.++..+.|+|++|+ +++++.+.+++.|+++++++....+++.+ .
T Consensus 134 ~~~~~~~~~ll~~~G~--~~~~---~~---~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~-~ 204 (259)
T 2ahr_A 134 QELQARVRDLTDSFGS--TFDI---SE---KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA-S 204 (259)
T ss_dssp HHHHHHHHHHHHTTEE--EEEC---CG---GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhCCC--EEEe---cH---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 8999999999999993 3332 12 356777888887777 67999999999999999999999999987 7
Q ss_pred HHHHHHhc--HHHHHHhcCc
Q 007951 347 SKIISTQG--MLAVYNSFSG 364 (583)
Q Consensus 347 a~li~e~G--~~~m~d~vS~ 364 (583)
.+++.++| -..+++.++.
T Consensus 205 ~~~~~~~~~~p~~l~~~~~~ 224 (259)
T 2ahr_A 205 ASNLKTSSQSPHDFIDAICS 224 (259)
T ss_dssp HHHHHHSSSCHHHHHHHHCC
T ss_pred HHHHHhcCCCHHHHHHhCCC
Confidence 88888887 4555566653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=170.81 Aligned_cols=212 Identities=14% Similarity=0.095 Sum_probs=152.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||+ |+||.+++.+|.+. |++|++.++. ....+.+.+.|+. ..+..++++++|+||+++|+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~~ 79 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDNI 79 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCchH
Confidence 79999999 99999999999998 9988766654 3345555557754 3467788999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-cCchhhhhhcccccCCCCccEEEeccCCCchhh----HHhHhccccccCCC-------
Q 007951 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------- 258 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v----R~lf~~G~e~~G~G------- 258 (583)
..++++++.+.++++++|++. .|..+..+.+ . .++..|++.||+.|+.-. ... +.|
T Consensus 80 ~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~--------~~g~l~~~~~ 147 (286)
T 3c24_A 80 IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAA--------RTDYHGGIAK 147 (286)
T ss_dssp HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHH--------HTCSSSSSSC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhh--------ccCccccccc
Confidence 999999999999999987754 4454544432 2 346899999999987610 001 245
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhhhhhhhh-hhh--hHhhHHHHHHHHHHHHHHHcCCCHHH
Q 007951 259 INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFG-ERG--ILLGAVHGIVESLFRRFTENGMNEDL 333 (583)
Q Consensus 259 v~aliAv~qd~sgeale~a~ala~aIG~~--~vieTtf~eE~~sDlfg-eqt--vLsG~~pAlieAl~d~~Ve~Gl~~e~ 333 (583)
.+.+++.. ..+++..+.+..+++.+|.+ +++... +...|.++ ... ..++.+.+++|++.+.+++.|+++++
T Consensus 148 ~~~i~~~~-~~~~~~~~~v~~l~~~~G~~~~~~~~v~---~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~ 223 (286)
T 3c24_A 148 QAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVT---TEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA 223 (286)
T ss_dssp EEEEEEEE-ESCTHHHHHHHHHHHHHTCSEEEEEECC---HHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ceeeeecc-CCCHHHHHHHHHHHHHhcCCcceEEEeC---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34433322 35778999999999999972 233332 33344442 211 12333444889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007951 334 AYKNTVECITGIISKIIST 352 (583)
Q Consensus 334 A~~~~~q~l~Glia~li~e 352 (583)
++..+.+++.+ +++++.+
T Consensus 224 ~~~~~~~~~~~-~~~~~~~ 241 (286)
T 3c24_A 224 ALDFMIGHLNV-EIAMWFG 241 (286)
T ss_dssp HHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHh
Confidence 99999999887 5555533
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-19 Score=181.72 Aligned_cols=208 Identities=13% Similarity=0.019 Sum_probs=152.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-av~~ADIVILavpd 188 (583)
+||+|||+|+||.++|++|+++ |+ +|++.++ +....+.+.+.|+.. ....++.+ ++++||+||+|+|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr-~~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEEC-CHHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999998 88 7765554 455677888888741 12457788 89999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
....++++++.++++++++|+++++++ +..+.. .+|. .+|..||...... ..+.........|..+++++
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G~e~--sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCCCCC--CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccCCcc--cchhhhhhhhhcCCEEEEEe
Confidence 999999999999999999999998876 233333 2233 8999999543211 00111111122577888999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECI 342 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAli-eAl~d~~Ve~Gl~~e~A~~~~~q~l 342 (583)
++..+.++++.++.+++.+|. +++.++.+++ +..+.+.+.+|.++ -++.+.+.+.+.+.+++..++....
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G~-~v~~~~~~~h------D~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~f 248 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH------DYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGF 248 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTTC-EEEECCHHHH------HHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccH
Confidence 888899999999999999996 3455444444 34577888999965 6666777777877766666655444
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=171.73 Aligned_cols=227 Identities=12% Similarity=0.061 Sum_probs=160.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++||+|||+|+||.+++.+|.+. |.|++|++.++ ++...+.+.+.|... ....++.++++++|+||+++|+..
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNR-SDRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECS-SHHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcC-CHHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 38999999999999999999976 22357665544 444556666677631 014577788999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCchh---hhhhcccccCCC-CccEEEeccC------CCchhhHHhHhccccccCCCc
Q 007951 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSMGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 191 ~~~Vl~eI~~~-Lk~GaiL~~a~G~~i---~~ie~~~i~~p~-dv~VI~v~Pn------gPg~~vR~lf~~G~e~~G~Gv 259 (583)
+.++++++.++ ++++++|+++++.+. ..+.+ .++. .++++..||. +|+....++ ..|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l--------~~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNL--------FENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTT--------TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHH--------hCCC
Confidence 99999999999 999999998888764 33333 3343 6788888886 555432222 2467
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~ 339 (583)
+.+++++...+.+..+.+..++..+|.. ++.++.+++ |.. .+.++|+.|.+.-++.+.+...|++++.++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~~~---d~~--~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~ 221 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHAR-YVEIDAAEH---DCV--TSQISHFPHIIASSLMKQAGDFSESHEMTKHFAA 221 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCE-EEECCHHHH---HHH--HHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH---HHH--HHHHhhHHHHHHHHHHHHHHhcccchhhHHhhcc
Confidence 7878888878889999999999999973 333332222 211 2556777777665666666667888899999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhcC
Q 007951 340 ECITGIISKIISTQGMLAVYNSFS 363 (583)
Q Consensus 340 q~l~Glia~li~e~G~~~m~d~vS 363 (583)
+++.+ ++++. ..--..+++.++
T Consensus 222 ~~~~~-~~rla-~~~p~~~~~~~~ 243 (290)
T 3b1f_A 222 GGFRD-MTRIA-ESEPGMWTSILL 243 (290)
T ss_dssp HHHHH-TTGGG-GSCHHHHHHHHH
T ss_pred ccHHh-hhhhh-cCCHHHHHHHHH
Confidence 99876 55555 222233355543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=172.93 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=158.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEecc
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILavp 187 (583)
+++|+|||+|+||.+++++|++. |+ +|++.++ +....+.+.+.|+.. ....+..++++ ++|+||+++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeC-CHHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 37999999999999999999988 87 7766554 444566677778741 11356778899 9999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCC------CchhhHHhHhccccccCCC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAG 258 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~Png------Pg~~vR~lf~~G~e~~G~G 258 (583)
++...++++++.++++++++|+++++.+.. .+.+ .+++ .++..||-. |+.... ..+.|
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~~gp~~a~~--------~l~~g 138 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEKSGVEYSLD--------NLYEG 138 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSCCSGGGCCS--------STTTT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCccCChhhhhh--------HHhCC
Confidence 999999999999999999999988877532 2322 2232 266666622 222211 11257
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHH-HHHHHHHHHHcCCCHHHHHHH
Q 007951 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI-VESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 259 v~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAl-ieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
.+++++++...+.+..+.+..++..+|.. ++.++.. ..++.+.++|.+|++ .-++.+.+.+.|++++.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~-~~~~~~~------~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 211 (281)
T 2g5c_A 139 KKVILTPTKKTDKKRLKLVKRVWEDVGGV-VEYMSPE------LHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKY 211 (281)
T ss_dssp CEEEECCCSSSCHHHHHHHHHHHHHTTCE-EEECCHH------HHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGC
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence 88889998888899999999999999973 3332221 234668899999996 477888888889999999998
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 007951 338 TVECITGIISKIISTQGMLAVYNSFS 363 (583)
Q Consensus 338 ~~q~l~Glia~li~e~G~~~m~d~vS 363 (583)
+.+++.+ ++++.. .-...+++.++
T Consensus 212 ~~~~~~~-~~r~~~-~~p~~~~~~~~ 235 (281)
T 2g5c_A 212 PGGGFKD-FTRIAK-SDPIMWRDIFL 235 (281)
T ss_dssp CTTTGGG-C---CC-SCHHHHHHHHH
T ss_pred ccccHHH-HhHHhc-CCHHHHHHHHH
Confidence 8888876 555543 22344444443
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=177.28 Aligned_cols=206 Identities=13% Similarity=0.090 Sum_probs=146.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc----CCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~----ADIVILavp 187 (583)
+||+|||+|+||.++|++|++. |++|+++++ +....+.+.+.|+.. ..++.+++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr-~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNR-SRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECS-CHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999998 988766554 455677888889864 5677777764 799999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
+....++++++.++ ++|++|+++++++...++...-.++ ++.+|..||.. |... ..+..+......|.+++++++.
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPma-G~e~-sG~~aa~~~Lf~g~~~iltp~~ 153 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMA-GTAN-SGWSASMDGLFKRAVWVVTFDQ 153 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECC-SCC--CCGGGCCSSTTTTCEEEECCGG
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccc-cccc-cchhhhhhHHhcCCeEEEEeCC
Confidence 99999999999886 8999999999987432221111333 57899999943 3221 1122232233457889999988
Q ss_pred CCCHH--------HHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHH-HHHHHHHHcCCCHHHHHHHH
Q 007951 268 DVDGR--------ATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE-SLFRRFTENGMNEDLAYKNT 338 (583)
Q Consensus 268 d~sge--------ale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlie-Al~d~~Ve~Gl~~e~A~~~~ 338 (583)
+.+.+ +++.++.++..+|+ +++..+..+| +..+++++.+|.++- ++.+.+.+ .++.+..++
T Consensus 154 ~~~~e~~~~~~~~~~~~v~~l~~~~Ga-~v~~~~~~~H------D~~~A~vshlPh~ia~aL~~~~~~---~~~~~~~la 223 (341)
T 3ktd_A 154 LFDGTDINSTWISIWKDVVQMALAVGA-EVVPSRVGPH------DAAAARVSHLTHILAETLAIVGDN---GGALSLSLA 223 (341)
T ss_dssp GTSSCCCCHHHHHHHHHHHHHHHHTTC-EEEECCHHHH------HHHHHHHTHHHHHHHHHHHHHHHH---THHHHHHHC
T ss_pred CCChhhhccchHHHHHHHHHHHHHcCC-EEEEeCHHHH------HHHHHHHhHHHHHHHHHHHHHhhc---chHHHHHHc
Confidence 77777 89999999999997 3555544454 355788999999544 44444322 234555555
Q ss_pred HHHH
Q 007951 339 VECI 342 (583)
Q Consensus 339 ~q~l 342 (583)
....
T Consensus 224 a~gf 227 (341)
T 3ktd_A 224 AGSY 227 (341)
T ss_dssp CHHH
T ss_pred cccH
Confidence 4444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=165.42 Aligned_cols=206 Identities=13% Similarity=0.076 Sum_probs=149.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++|+||| +|+||.++|++|++. |++|++.++... .+..+++++||+||++||+..
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7899999 999999999999998 888877665422 135678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
..++++++.++++++++|++++|++...++...-..+ .+++..||. .|+.. .. ..|.+.+++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~-~g~~~-----~~----~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-----AS----MAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-----SC----CTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCC-CCCCc-----hh----hcCCeEEEecCC--C
Confidence 9999999999999999999999886433321100222 578888883 23221 01 245677788765 6
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH---H
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECITGI---I 346 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAli-eAl~d~~Ve~Gl~~e~A~~~~~q~l~Gl---i 346 (583)
.++.+.+..++..+|.. ++.++.++ .+..+.++|++|+++ -++.+.+.+.|++++++++++.+++.++ +
T Consensus 144 ~~~~~~v~~l~~~~G~~-~~~~~~~~------~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~ 216 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAK-IYQTNATE------HDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMI 216 (298)
T ss_dssp GGGTHHHHHHHHHTTCE-EEECCHHH------HHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCE-EEECCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHH
Confidence 78889999999999973 33332222 346688999999974 5677777789999999999999988762 3
Q ss_pred HHHHHHhcHHHHHHhcC
Q 007951 347 SKIISTQGMLAVYNSFS 363 (583)
Q Consensus 347 a~li~e~G~~~m~d~vS 363 (583)
+++. ..-...++|.++
T Consensus 217 ~ria-~~~p~~~~di~~ 232 (298)
T 2pv7_A 217 GRLF-AQDAELYADIIM 232 (298)
T ss_dssp HHHH-TSCHHHHHHHHC
T ss_pred HHHh-cCCHHHHHHHHH
Confidence 3333 223344455554
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=158.61 Aligned_cols=222 Identities=13% Similarity=0.066 Sum_probs=157.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|+|+|||+|+||.+++.+|.+. |++|++.++. +...+.+.+.|+.. ....++.++ +++|+||+++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 8887766554 44455666777641 014577788 999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCC------CchhhHHhHhccccccCCCceEEEee
Q 007951 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Png------Pg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
.++++++.++++++++|+++++++...++...-.++ +++..||-. |+... .....|.+..+++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a~--------~~~~~g~~~~~~~ 139 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAE--------ENLFVNAPYVLTP 139 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCC--------TTTTTTCEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHHh--------HHHhCCCcEEEec
Confidence 999999999999999988887776433321000222 567677732 22211 0112456777888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMN--EDLAYKNTVECI 342 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~--~e~A~~~~~q~l 342 (583)
....+.+..+.+..++..+|.. ++.+ .+ ...++.+.+++.+|+ +.-++.+.+++.|++ ++.++.++.+++
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~-~~~~---~~---~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~ 212 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVK-IYLC---TP---ADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGF 212 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCE-EEEC---CH---HHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEc---CH---HHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcc
Confidence 7777889999999999999963 2222 22 245567888999877 566888899999998 899999999998
Q ss_pred HHHHHHHHHHhcHHHHHHhcC
Q 007951 343 TGIISKIISTQGMLAVYNSFS 363 (583)
Q Consensus 343 ~Glia~li~e~G~~~m~d~vS 363 (583)
.+ ++++. ..--..+++.++
T Consensus 213 ~~-~~r~~-~~~p~~~~~~~~ 231 (279)
T 2f1k_A 213 RD-TSRVG-GGNPELGTMMAT 231 (279)
T ss_dssp HH-HHTGG-GSCHHHHHHHHH
T ss_pred cc-hhccc-CCCHHHHHHHHH
Confidence 76 55554 222344455544
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-15 Score=144.46 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=138.5
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+++ ++|+|||+|.||.+++..|.+. |++ |.+.++..++..+.+...|+.. ..+..++++++|+||+++
T Consensus 8 ~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEECC
T ss_pred CCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEec
Confidence 445 7899999999999999999988 887 5555554333333334447764 567888899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
|+..+.++++++.+.+++|++|++. .|+....+.. .++. .. ..||-.|....+ . . ...+.+.++
T Consensus 77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g~~-~-~-----~~~~~~~~v-- 141 (266)
T 3d1l_A 77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSKQR-E-V-----DFKEIPFFI-- 141 (266)
T ss_dssp CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC---C-C-C-----CCTTCCEEE--
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCCCc-h-h-----hcCCCeEEE--
Confidence 9999999999999999999987655 5555444332 2222 11 145544311100 0 0 123456544
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF-TENGMNEDLAYKNTVECITG 344 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~-Ve~Gl~~e~A~~~~~q~l~G 344 (583)
...+.+..+.+..+++.+|.. ++.. .+.....|+..+.+++.+++.+-++.+.+ .+.|+++++++.+..+++.+
T Consensus 142 -~~~~~~~~~~~~~l~~~~g~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~~~ 216 (266)
T 3d1l_A 142 -EASSTEDAAFLKAIASTLSNR-VYDA---DSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARK 216 (266)
T ss_dssp -EESSHHHHHHHHHHHHTTCSC-EEEC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHH
T ss_pred -ecCCHHHHHHHHHHHHhcCCc-EEEe---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 223678899999999999963 2221 12111357788888888887444444444 47899999999998888765
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=151.81 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=132.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||+|+||.+++++|.+. ++|+ +.++..++..+.+.+.|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999998643 3553 555543333333345565 3 5577788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEec-CchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~-G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
+.+++.++. +++++|++.+ ++.+..++. ........+..+|++|... +.+ .|++..++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~p~~~~~g~~~~~--~~~--------~~~~~~~~~---- 130 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSSLEKAL--EMK--------DQIVFGLEG---- 130 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC--CTTGG--GCG--------GGCCEEECC----
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---hhccccchhhhcCCCchhH--HHh--------CCCeEEEEe----
Confidence 888887765 6788776665 555544432 1000011112234444332 011 246664543
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 007951 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~ 348 (583)
+.+.++.++.+++.+|.. ++.. .+...+.++..++++|.++. ++..+.+.+++.|+++++|+ ..+.+.+ .++
T Consensus 131 ~~~~~~~~~~l~~~lG~~-~~~v---~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~--~~~l~~~-~~~ 203 (276)
T 2i76_A 131 DERGLPIVKKIAEEISGK-YFVI---PSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELL--IHTLMKG-VAD 203 (276)
T ss_dssp CTTTHHHHHHHHHHHCSC-EEEC---CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHH--HHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHhCCC-EEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHH-HHH
Confidence 345688999999999963 3332 23233467777888777776 44444567778999999997 7788877 788
Q ss_pred HHHHhcHHHHHHhcCcc
Q 007951 349 IISTQGMLAVYNSFSGE 365 (583)
Q Consensus 349 li~e~G~~~m~d~vS~~ 365 (583)
++.+.|. ++.++.|
T Consensus 204 ~~~~~gp---~~~~tgP 217 (276)
T 2i76_A 204 NIKKMRV---ECSLTGP 217 (276)
T ss_dssp HHHHSCG---GGGCCSH
T ss_pred HHHhcCh---HhhCCCC
Confidence 8888882 6666654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=137.19 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=133.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-----------C--------------ceec
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--------------FTEE 165 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-----------G--------------~~~~ 165 (583)
++||+|||+|.||.++|+.|..+ |++|++.+++. ...+.+.+. | +..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~- 75 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDINT-DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY- 75 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-
Confidence 48999999999999999999998 99987766553 334444332 2 222
Q ss_pred CCCcCCHhhhhccCCeEEEeccch--HHHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~--a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
..++.+++++||+||+++|++ ...++++++.+.++++++|+ .++++.+..+.. .++...+++.+||..|..
T Consensus 76 ---~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~ 149 (283)
T 4e12_A 76 ---SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVW 149 (283)
T ss_dssp ---ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTT
T ss_pred ---eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCcc
Confidence 467888999999999999987 56778999999999999876 567777665543 223446899999988865
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHH
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d 322 (583)
. +-...++++...+.+.++.+..+++.+|...+ ... .+ . .-| +..-.+.+++...+.
T Consensus 150 ~--------------~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v-~v~--~~-~-~g~----i~nr~~~~~~~ea~~ 206 (283)
T 4e12_A 150 V--------------NNTAEVMGTTKTDPEVYQQVVEFASAIGMVPI-ELK--KE-K-AGY----VLNSLLVPLLDAAAE 206 (283)
T ss_dssp T--------------SCEEEEEECTTSCHHHHHHHHHHHHHTTCEEE-ECS--SC-C-TTT----THHHHHHHHHHHHHH
T ss_pred c--------------CceEEEEeCCCCCHHHHHHHHHHHHHcCCEEE-EEe--cC-C-CCE----EehHHHHHHHHHHHH
Confidence 5 23335677888899999999999999996422 110 11 1 111 122233344555555
Q ss_pred HHHHcCCCHHHHHHH
Q 007951 323 RFTENGMNEDLAYKN 337 (583)
Q Consensus 323 ~~Ve~Gl~~e~A~~~ 337 (583)
.+.+.|.+|++....
T Consensus 207 l~~~g~~~~~~id~~ 221 (283)
T 4e12_A 207 LLVDGIADPETIDKT 221 (283)
T ss_dssp HHHTTSCCHHHHHHH
T ss_pred HHHhCCCCHHHHHHH
Confidence 566666899875543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=137.44 Aligned_cols=161 Identities=20% Similarity=0.170 Sum_probs=111.8
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc--------------cHHHHHHcCceecCCCc
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTL 169 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~--------------s~~~A~~~G~~~~d~t~ 169 (583)
....+.+ +||+|||+|+||.++|++|.+. |++|++++|..++ ..+.+.+.|... .
T Consensus 13 ~~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 81 (245)
T 3dtt_A 13 ENLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----L 81 (245)
T ss_dssp ------C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----E
T ss_pred cccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----c
Confidence 3466777 9999999999999999999998 9999888776443 122222334332 5
Q ss_pred CCHhhhhccCCeEEEeccchHHHHHHHHH-HhcCCCCcEEEEec-Cc-----------------hhhhhhcccccCCCCc
Q 007951 170 GDIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF-----------------LLGHLQSMGLDFPKNI 230 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~~Vl~eI-~~~Lk~GaiL~~a~-G~-----------------~i~~ie~~~i~~p~dv 230 (583)
.++.|++++||+||+++|++.+.+++.++ .+.+ +|++|++++ |+ ....+++ .+| +.
T Consensus 82 ~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~~ 156 (245)
T 3dtt_A 82 AAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-EA 156 (245)
T ss_dssp EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-TS
T ss_pred cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-CC
Confidence 67889999999999999999999999998 7877 888887665 22 1233443 445 47
Q ss_pred cEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 231 ~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+||+.+|+.++++....-.. -.|...++.... +.++.+.+..++..+|..
T Consensus 157 ~vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~ 206 (245)
T 3dtt_A 157 KVVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQ 206 (245)
T ss_dssp EEEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCC
T ss_pred eEEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCC
Confidence 99999999999885321100 012222222233 678999999999999974
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=133.08 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=111.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
+||+|||+|+||.++|.+|.+. |++|++ ..|..++..+.+.+.|... ..+..++++++|+||+++|++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp~~~ 93 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVPYDS 93 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCChHH
Confidence 7999999999999999999998 888877 5555555555566667653 3455677899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCc--------------hhhhhhcccccCCCCccEEEeccCCCchhhHHhHhcccccc
Q 007951 191 QADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~-~a~G~--------------~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~ 255 (583)
+.++++++.+ + ++++|+ .+.|+ ....+++ .+| +..|++++|+.|..... .|....
T Consensus 94 ~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~~~v~~----~g~~~~ 163 (220)
T 4huj_A 94 IADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFNTLPAAVLA----ADPDKG 163 (220)
T ss_dssp HHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESCSSCHHHHT----SCSBCS
T ss_pred HHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCCCCCHHHhh----hCcccC
Confidence 9999999887 5 577665 45566 3445544 445 57899999999988742 121112
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 256 G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+...+++ .. +.++.+.+..++..+|..
T Consensus 164 ~~~~~v~~~-g~--~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 164 TGSRVLFLS-GN--HSDANRQVAELISSLGFA 192 (220)
T ss_dssp SCEEEEEEE-ES--CHHHHHHHHHHHHHTTCE
T ss_pred CCCeeEEEe-CC--CHHHHHHHHHHHHHhCCC
Confidence 222333233 33 488999999999999974
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=137.63 Aligned_cols=185 Identities=11% Similarity=0.046 Sum_probs=121.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||+|||+|+||.++|++|.+. |+ +|+++++. ++...+.+.+.|+.. ..+..|++++||+||+++|+.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~ 94 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTAQ 94 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCTT
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCch
Confidence 8999999999999999999999 99 88877775 245667777889875 678899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcc-cccCCC--CccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPK--NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~--dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
...++++++.+.+++|++|++.+.+........ ...... ++.++- +|-..+..- ..| ..+ +++..
T Consensus 95 ~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd-~pv~g~~~~----~~g------~l~-i~vgg 162 (312)
T 3qsg_A 95 AALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA-VAVMSAVKP----HGH------RVP-LVVDG 162 (312)
T ss_dssp THHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE-EEECSCSTT----TGG------GSE-EEEES
T ss_pred hHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe-ccccCCchh----hcC------CEE-EEecC
Confidence 999999999999999999998877642211100 001112 556654 242211110 011 233 34433
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHH--------HHHHHHHHHHHHHcCCCHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV--------HGIVESLFRRFTENGMNED 332 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~--------pAlieAl~d~~Ve~Gl~~e 332 (583)
.+. +.++.++..+|.. ++.+ . +..+....+-.+. ..+.|++. .+.+.|++++
T Consensus 163 ~~~-----~~~~~ll~~~g~~-~~~~---g----~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gld~~ 222 (312)
T 3qsg_A 163 DGA-----RRFQAAFTLYGCR-IEVL---D----GEVGGAALLKMCRSAVLKGLEALFLEALA-AAEKMGLADR 222 (312)
T ss_dssp TTH-----HHHHHHHHTTTCE-EEEC---C----SSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCHHH
T ss_pred ChH-----HHHHHHHHHhCCC-eEEc---C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHH
Confidence 321 7889999999964 2211 1 1122322232222 23444444 7888999984
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=133.40 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=127.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc-chH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp-d~a 190 (583)
|||+|||+|.||.++|++|.+. |++|++++++.+ ..+...+.|+.. ..+..|+++++|+||+++| +..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPE-KAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999998 999887766544 455666678875 6789999999999999999 457
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
..+++ +++.+.+++|++|++.++......... ......++.++. +|-..+... .. .|...+++ .
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~-g 138 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP---AE-------DGTLIILA-A 138 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH---HH-------HTCEEEEE-E
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH---Hh-------cCCEEEEE-e
Confidence 77888 789999999999998887653321110 001123667776 774333321 11 23434333 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh-hHhhHHHH----HHHHHHHHHHHcCCCHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG----IVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt-vLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
. +.+..+.++.+++.+|.. ++...-.... +.. .+.+..-+ ++.-++..+.+.|+++++.+..
T Consensus 139 g--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~------~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~ 205 (287)
T 3pef_A 139 G--DRNLYDEAMPGFEKMGKK-IIHLGDVGKG------AEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDV 205 (287)
T ss_dssp E--CHHHHHHHHHHHHHHEEE-EEECSSTTHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCC-eEEeCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 467899999999999964 2221111111 111 11233222 3334455677889998876554
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=134.65 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=112.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+||+|||+|+||.++|++|++. |++|+..++. ++ +++|| |+++|++.+
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9987654441 11 56789 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCc-hhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 192 ADNYEKIFSCMKPNSILGLSHGF-LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~-~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
.++++++.+++++|++|++++|. +...++. ..+.+..+|..||. +|.+..++.. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm------------------~g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPI------------------GQDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEE------------------ETTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeC------------------CCCceeeeCC---C
Confidence 99999999999999999987664 4333332 11356889999993 1344444433 5
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHH
Q 007951 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (583)
Q Consensus 271 geale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~ 324 (583)
.++++.++.|+..+|. +++..+..++ |.|++....+..+.+++....+.+
T Consensus 111 ~~a~~~l~~L~~~lG~-~vv~~~~~~h---d~~~AAvsh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 111 ELGETIVGLLVGELGG-SIVEIADDKR---AQLAAALTYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHHHHHHHTTC-EECCCCGGGH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-EEEEeCHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999997 4555444444 777666555666666666555554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=130.20 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=139.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceecC-------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~d------------- 166 (583)
++||+|||+|.||.++|..|.++ |++|++.++..+ ..+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 47899999999999999999998 999877666533 23322 123421000
Q ss_pred -CCcCCHhhhhccCCeEEEeccchH--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 167 -GTLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 167 -~t~~d~~Eav~~ADIVILavpd~a--~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
....++.+++++||+||+++|++. ...+++++.++++++++|+ .++|+.+..+.. .++..-.+++.||..|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 013577778999999999999865 3568889999999999875 567887666544 333334799999988865
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHH
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d 322 (583)
. +..+ .+..+...+.+..+.+..++..+|.. ++.. .+. .-| +..-.+.+++.-++.
T Consensus 165 ~------------~~~~--~i~~g~~~~~e~~~~~~~l~~~~G~~-~v~~---~~~--~g~----i~nr~l~~~~~Ea~~ 220 (302)
T 1f0y_A 165 V------------MKLV--EVIKTPMTSQKTFESLVDFSKALGKH-PVSC---KDT--PGF----IVNRLLVPYLMEAIR 220 (302)
T ss_dssp T------------CCEE--EEECCTTCCHHHHHHHHHHHHHTTCE-EEEE---CSC--TTT----THHHHHHHHHHHHHH
T ss_pred c------------CceE--EEeCCCCCCHHHHHHHHHHHHHcCCc-eEEe---cCc--ccc----cHHHHHHHHHHHHHH
Confidence 4 1222 35667778999999999999999963 2111 111 111 122333456666667
Q ss_pred HHHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhc
Q 007951 323 RFTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSF 362 (583)
Q Consensus 323 ~~Ve~Gl~~e~A~~~~~q~l---~Glia~li~e~G~~~m~d~v 362 (583)
.+.+.|.++++......... .| -..+.-..|++.+++..
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~G-P~~~~D~~Gld~~~~~~ 262 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMG-PFELLDYVGLDTTKFIV 262 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSC-HHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHHHH
Confidence 77777788877544322211 12 22344444665554443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-12 Score=136.83 Aligned_cols=213 Identities=13% Similarity=0.124 Sum_probs=142.1
Q ss_pred cceeeeccccccccc-----hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-------cHHHH
Q 007951 90 DEYIVRGGRDLFNLL-----PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEA 157 (583)
Q Consensus 90 ~e~v~~~~r~~f~~~-----~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-------s~~~A 157 (583)
.|+.++ +|..+.. ...-..++||+|||+|.||.+||+.|.++ |++|++.+++.++ ..+.+
T Consensus 30 a~~~~~--~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~ 101 (460)
T 3k6j_A 30 AHSLAG--QWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYARE 101 (460)
T ss_dssp TTCCTT--SCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHhhc--cccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHH
Confidence 555555 4766622 11223458999999999999999999998 9998887765442 12344
Q ss_pred HHcCceecC---------CCcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhccccc
Q 007951 158 RAAGFTEEN---------GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLD 225 (583)
Q Consensus 158 ~~~G~~~~d---------~t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~ 225 (583)
.+.|..... ....++ +++++||+||.++|.+.. .+++.+|.+.++++++|+ .++++.+..+.+ .
T Consensus 102 ~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~ 177 (460)
T 3k6j_A 102 KSFKRLNDKRIEKINANLKITSDF-HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---V 177 (460)
T ss_dssp HHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---T
T ss_pred HHcCCCCHHHHHHHhcceEEeCCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---h
Confidence 455542100 013455 478999999999997543 468899999999999985 667888776654 3
Q ss_pred CCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhh
Q 007951 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (583)
Q Consensus 226 ~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfge 305 (583)
.+...+++.+||..|...+ -..-+.++...+.+.++.+..+++.+|...+.- .+ ..-|
T Consensus 178 ~~~p~r~iG~HffnPv~~m--------------~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v----~d--~pGf-- 235 (460)
T 3k6j_A 178 LRDPSNLVGIHFFNPANVI--------------RLVEIIYGSHTSSQAIATAFQACESIKKLPVLV----GN--CKSF-- 235 (460)
T ss_dssp SSSGGGEEEEECCSSTTTC--------------CEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEE----SS--CCHH--
T ss_pred ccCCcceEEEEecchhhhC--------------CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEE----ec--ccHH--
Confidence 3344689999998887651 223356677889999999999999999742211 11 1111
Q ss_pred hhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 007951 306 RGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (583)
Q Consensus 306 qtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~ 338 (583)
+..-.+.+++..+...+.+.|.++++.....
T Consensus 236 --i~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~ 266 (460)
T 3k6j_A 236 --VFNRLLHVYFDQSQKLMYEYGYLPHQIDKII 266 (460)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1222233345555555568999998866643
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=129.17 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=104.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC--------CcCCHhhhhc---cCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~--------t~~d~~Eav~---~AD 180 (583)
|||+|||+|+||.++|.+|.++ |++|++.+++. ...+...+.|+..... ...+..++.+ ++|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 76 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWP-AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD 76 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence 7999999999999999999998 99887766653 3445555557543110 0113344444 899
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEE-ecCchh-hhhhcccccCCCCccEEEeccC------CCchhhHHhHhccc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSMGLDFPKNIGVIAVCPK------GMGPSVRRLYVQGK 252 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~-a~G~~i-~~ie~~~i~~p~dv~VI~v~Pn------gPg~~vR~lf~~G~ 252 (583)
+||+++|+....++++++.++++++++|++ ..|+.. ..+.+ .+++. .|+..+|. +|+...
T Consensus 77 ~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~~-------- 144 (316)
T 2ew2_A 77 LIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRVK-------- 144 (316)
T ss_dssp EEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEEE--------
T ss_pred EEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEEE--------
Confidence 999999999999999999999999997664 467764 34433 33433 56643331 122210
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
..+.|...+ .+....+.+..+.+..++..+|..
T Consensus 145 -~~~~g~~~i-~~~~~~~~~~~~~~~~ll~~~g~~ 177 (316)
T 2ew2_A 145 -LLGDGEIEL-ENIDPSGKKFALEVVDVFQKAGLN 177 (316)
T ss_dssp -ECSCCCEEE-EESSGGGHHHHHHHHHHHHHTTCC
T ss_pred -EecCCcEEE-eecCCCccHHHHHHHHHHHhCCCC
Confidence 014677774 444444677889999999999964
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=131.63 Aligned_cols=202 Identities=14% Similarity=0.032 Sum_probs=125.7
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch-
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~- 189 (583)
++||+|||+|+||.++|++|.+. |++|++++++.+ ..+...+.|+.. ..+..|++++||+||+++|+.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPA-KCAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGG-GGHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 37899999999999999999998 999887776544 445555668775 678999999999999999986
Q ss_pred HHHHHH---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 190 a~~~Vl---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
...+++ +++.+.+++|++|++.+.......+.. ......++.++.. |...+.. .-. .|...+++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~-------~g~l~~~~- 137 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAE-------DGTLIILA- 137 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHH-------HTCEEEEE-
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHh-------cCCEEEEE-
Confidence 666788 778899999999988877643221110 0011235666653 5322221 111 24434333
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007951 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~ 339 (583)
.. +.+..+.++.+++.+|.. ++...-...-..-.+..... .+...+++.-++..+.+.|++++..+...-
T Consensus 138 gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~~~~Kl~~N~~-~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 207 (287)
T 3pdu_A 138 AG--DQSLFTDAGPAFAALGKK-CLHLGEVGQGARMKLVVNMI-MGQMMTALGEGMALGRNCGLDGGQLLEVLD 207 (287)
T ss_dssp EE--CHHHHHHTHHHHHHHEEE-EEECSSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHHHHhCCC-EEEcCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 478899999999999963 22211011000000111111 111122233334567889999987666543
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=131.85 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=126.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
++||||||+|+||.+||+||.++ |++|++++|..+ ..+...+.|... ..++.|+++++|+||+|+|+..
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 48999999999999999999999 999988877644 456666788886 7899999999999999999877
Q ss_pred HH-HHHHH---HHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 191 QA-DNYEK---IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 191 ~~-~Vl~e---I~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
+. +|+.. +.+.+++|++|++.+-.... .+.. ..-..++.++- +|-.-+.. .=+ .|--.++
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~---~A~-------~G~L~im 138 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAA-------AGTLTFM 138 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHH---HHH-------HTCEEEE
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHH---HHH-------hCCEEEE
Confidence 75 57653 78899999999988766422 1211 01134677763 45221211 011 2333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccc-hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTt-f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+.. +.++.+.++-+++.+|.. ++..- .-.=...++. -+.++.+...++.|++ ..+.+.|++++..+.
T Consensus 139 -vGG--~~~~~~~~~p~l~~~g~~-i~~~G~~G~g~~~Kl~-~N~l~~~~~~a~aEa~-~la~~~Gld~~~~~~ 206 (300)
T 3obb_A 139 -VGG--DAEALEKARPLFEAMGRN-IFHAGPDGAGQVAKVC-NNQLLAVLMIGTAEAM-ALGVANGLEAKVLAE 206 (300)
T ss_dssp -EES--CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHTTCCHHHHHH
T ss_pred -EeC--CHHHHHHHHHHHHHhCCC-EEEeCCccHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHH
Confidence 344 578999999999999963 21110 0000111111 1223334444455554 356788999886443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=130.94 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=125.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch-H
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~-a 190 (583)
+||+|||+|+||.++|++|.+. |++|+++++. +...+...+.|... ...+..|++++||+||+++|+. .
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999998 9998877655 34456666667652 0357889999999999999986 4
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
...++ +++.+.+++|++|++.+.......... ......++.++. +|-..+... -. .|...+++ .
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~-g 145 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA-S 145 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE-E
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe-C
Confidence 56676 678899999999998877653221110 011124677776 884333331 11 34545444 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccc--hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATT--LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTt--f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
. +.+..+.++.+++.+|.. ++... ...-.... +.... +.+...+++.-++..+.+.|+++++.+..
T Consensus 146 g--~~~~~~~~~~ll~~~g~~-~~~~~~~~g~a~~~K-l~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~ 213 (303)
T 3g0o_A 146 G--SEAAFTRLKPVLDAVASN-VYRISDTPGAGSTVK-IIHQL-LAGVHIAAAAEAMALAARAGIPLDVMYDV 213 (303)
T ss_dssp C--CHHHHHHHHHHHHHHEEE-EEEEESSTTHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHCCC-EEECCCCCcHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 578899999999999963 22211 11100111 11111 22222222333344677889998866554
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=130.58 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=125.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch-H
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~-a 190 (583)
+||+|||+|+||.++|++|.+. |++|+++++..+ ..+...+.|+.. ..+..|++++||+||+++|+. .
T Consensus 22 ~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 90 (310)
T 3doj_A 22 MEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLS-KCDELVEHGASV----CESPAEVIKKCKYTIAMLSDPCA 90 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHHH
Confidence 8999999999999999999998 999887766544 455556778875 678999999999999999975 5
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl---~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
..+++ +++.+.+++|++|++.++......+.. ......++.++. +|-..+.. . -. .|...+++ .
T Consensus 91 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~--~-a~-------~g~l~i~~-g 158 (310)
T 3doj_A 91 ALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK--P-AE-------DGQLIILA-A 158 (310)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH--H-HH-------HTCEEEEE-E
T ss_pred HHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh--H-Hh-------cCCeEEEE-c
Confidence 56788 678899999999998887653321110 001123566765 67332222 1 11 23444344 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
. +.+..+.++.++..+|.. ++...-...-..-.+-... +.+...+++.-++..+.+.|+++++.+..
T Consensus 159 g--~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~ 225 (310)
T 3doj_A 159 G--DKALFEESIPAFDVLGKR-SFYLGQVGNGAKMKLIVNM-IMGSMMNAFSEGLVLADKSGLSSDTLLDI 225 (310)
T ss_dssp E--CHHHHHHHHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCC-EEEeCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 478899999999999964 2221101100000111111 11111223333444667889998866553
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=129.84 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=127.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc-chH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp-d~a 190 (583)
++|+|||+|.||.++|.+|.+. |++|++.++..+ ..+...+.|+.. ..+..++++++|+||+++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAE-KCDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGG-GGHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999988 888877666544 344555678764 5678889999999999999 677
Q ss_pred HHHHHHHH---HhcCCCCcEEEEecCchh---hhhhcccccC-CCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 191 QADNYEKI---FSCMKPNSILGLSHGFLL---GHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 191 ~~~Vl~eI---~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~-p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
..+++.++ .+.+++|++|++++.... ..+.+ .+ ..++.++.. |. ++... .. +.|...++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~-~g~~~--~~-------~~g~~~~~ 165 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PV-SGNQQ--LS-------NDGMLVIL 165 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CE-ESCHH--HH-------HHTCEEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-Cc-cCChh--HH-------hhCCEEEE
Confidence 77888754 478899998887766542 22222 11 235566643 42 22111 11 13454434
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
... +.+..+.+..++..+|.......... ....+......++|+..+ +.|++.. +.+.|+++++++....++
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~--~~~~~K~~~n~~~~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~~ 238 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKTSFFLGEVG--NAAKMMLIVNMVQGSFMATIAEGLTL-AQVTGQSQQTLLDILNQG 238 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEEECSSTT--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHHS
T ss_pred eCC---CHHHHHHHHHHHHHhcCCEEEeCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHcC
Confidence 333 46888999999999996421111111 011111123455665544 5555554 899999998877665544
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-13 Score=131.63 Aligned_cols=199 Identities=15% Similarity=0.057 Sum_probs=120.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc-hH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd-~a 190 (583)
|||+|||+|+||.+++.+|.+. |++|++.++.. ...+...+.|+.. ..+..++++++|+||+++|+ ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFP-DACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSST-HHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999988 88887766654 3455556668764 56888999999999999975 45
Q ss_pred HHHHHHH---HHhcCCCCcEEEEecCchhhhhhcccccCC-CCccEEEeccCCCchhhHHhHhccccccCCCceEEEeec
Q 007951 191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (583)
Q Consensus 191 ~~~Vl~e---I~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p-~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~ 266 (583)
...++.+ +.+.+++|++|++.+|+.....+...-.++ .++. +|+.|...-..... .|...++ +.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~----~~~~p~~~g~~~a~-------~~~~~~~-~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV----FMDAPVSGGVGAAR-------SGNLTFM-VG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE----EEECCEESHHHHHH-------HTCEEEE-EE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE----EEEcCCCCChhHHh-------cCcEEEE-eC
Confidence 6677775 456789999888888886543321000111 2222 23444332111111 2444433 33
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 267 qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
. +.+..+.+..++..+|.. ++.+........-.+............+.|++. .+.+.|+++++++..
T Consensus 138 ~--~~~~~~~v~~l~~~~g~~-~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~ 204 (296)
T 2gf2_A 138 G--VEDEFAAAQELLGCMGSN-VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKI 204 (296)
T ss_dssp S--CGGGHHHHHHHHTTTEEE-EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHcCC-eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHH
Confidence 3 577889999999999964 221111000000000111111222233566655 888999998866654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=123.53 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=135.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------CceecCCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-------G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
|+|+|||+|.||.+||++|. + |++|++.+++. ...+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~~-~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVSE-KALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECCH-HHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 99988776653 445666665 5553 456665 899999999
Q ss_pred eccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 185 LISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 185 avpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
++|+... ..++.++.+. +|++|+ .++++++..+.. .......++.+||--|... +-..
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 9998875 3466777665 999885 677887765544 2223347999999666533 2344
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
.+.+....+.+.++.+..+++.+|.. ++.. .+. ...-+ ++ .+.+.||+. +++.|+++++.....-..
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~-~v~v---~d~---fi~Nr-ll---~~~~~EA~~--l~~~Gv~~e~id~~~~~g 207 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKE-VVVC---KGQ---SLVNR-FN---AAVLSEASR--MIEEGVRAEDVDRVWKHH 207 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCE-EEEE---ESS---CHHHH-HH---HHHHHHHHH--HHHHTCCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCe-EEEe---ccc---ccHHH-HH---HHHHHHHHH--HHHhCCCHHHHHHHHHhc
Confidence 46677788999999999999999964 2111 121 11111 12 134555554 344499888766543221
Q ss_pred H------HHHHHHHHHHhcHHHHHHh
Q 007951 342 I------TGIISKIISTQGMLAVYNS 361 (583)
Q Consensus 342 l------~Glia~li~e~G~~~m~d~ 361 (583)
. .| --+++-..|++..+..
T Consensus 208 ~g~~~~~~G-P~~l~D~~Gld~~~~~ 232 (293)
T 1zej_A 208 LGLLYTLFG-PLGNLDYIGLDVAYYA 232 (293)
T ss_dssp HHHHHHHHH-HHHHHHHHCHHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHhchHHHHHH
Confidence 1 13 2455556676555443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=125.13 Aligned_cols=200 Identities=15% Similarity=0.052 Sum_probs=126.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
+||+|||+|+||.++|++|.+. |++|++++++. ...+.+.+.|... ..++.|++++||+||+++|+..
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRSP-GKAAALVAAGAHL----CESVKAALSASPATIFVLLDNHA 78 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSH-HHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeCCHHH
Confidence 7899999999999999999998 99988776654 4455566668775 6789999999999999999775
Q ss_pred HHHHHH--HHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYE--KIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~--eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
..+++. .+.+ +++|++|++++.......+.. ......++.++.. |-..++.. . |.+-..+++ ..
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~-----~-----~~~~~~i~~-gg 145 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRN-----V-----GHRESHSIH-TG 145 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGG-----T-----TCTTCEEEE-EE
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCccc-----c-----cCCceEEEE-cC
Confidence 567776 5644 579999998877653211110 0011246777763 53322211 1 122223233 33
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhh-hhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~s-DlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~ 341 (583)
+.++.+.++.+++.+|. +++....-++... .++. .++.+.+.++.|+ +..+.+.|++++..+....+.
T Consensus 146 --~~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k--~~~~~~~~~~~Ea-~~la~~~Gld~~~~~~~~~~~ 214 (306)
T 3l6d_A 146 --DREAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH--AHAFAAMVTFFEA-VGAGDRFGLPVSKTARLLLET 214 (306)
T ss_dssp --CHHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHTTCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH--HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHh
Confidence 47899999999999976 3333200010000 1121 2233333334443 446789999999988766554
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-12 Score=135.25 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=132.8
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceecC---------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~d---------~t~~ 170 (583)
++||+|||+|+||.++|++|.++ |++|++.+++ +...+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 47999999999999999999998 9998776655 333444432 3321000 0134
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+. +++++||+||+++|++.. .+++.++.+.++++++| +.++++++..+.. .++...++++.||..|.+.+
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 45 478999999999998854 47889999999999988 5789998876654 33345689999999988872
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHc
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~ 327 (583)
--..++.+...+.+.++.+..+++.+|... +.. .+.. -| +....+.+++..+...+.+.
T Consensus 151 -----------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~-v~v---~d~~--Gf----i~Nr~l~~~~~Ea~~l~~~g 209 (483)
T 3mog_A 151 -----------KLVEVVSGLATAAEVVEQLCELTLSWGKQP-VRC---HSTP--GF----IVNRVARPYYSEAWRALEEQ 209 (483)
T ss_dssp -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEE---ESCT--TT----THHHHTHHHHHHHHHHHHTT
T ss_pred -----------CeEEEecCCCCCHHHHHHHHHHHHHhCCEE-EEE---eccC--cc----hHHHHHHHHHHHHHHHHHhC
Confidence 223366677889999999999999999642 111 1111 01 12223333555566666677
Q ss_pred CCCHHHHHHH
Q 007951 328 GMNEDLAYKN 337 (583)
Q Consensus 328 Gl~~e~A~~~ 337 (583)
|.++++....
T Consensus 210 ~~~~~~id~a 219 (483)
T 3mog_A 210 VAAPEVIDAA 219 (483)
T ss_dssp CSCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7778766554
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=129.97 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=119.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+||||||+|+||.+||+||.++ |++|++++|+.++ .+...+.|... +.++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 6899999999999999999999 9999887776443 44455678775 67899999999999999998776
Q ss_pred H-HHH-HHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCC
Q 007951 192 A-DNY-EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 192 ~-~Vl-~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
. +++ .++.+.+++|+++++.+-+.....++. ......++.++ -+|-.-+... =. .|...++ +..
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l-dapVsGg~~~---a~-------~g~l~im-~gG- 141 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV-GAPIFARPEA---VR-------AKVGNIC-LSG- 141 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-ECCEECCHHH---HH-------HTCCEEE-EEE-
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee-cCCcCCCccc---cc-------cccceee-ccc-
Confidence 5 444 468899999999998876642211110 01112466666 3452222110 01 2333322 233
Q ss_pred CCHHHHHHHHHHHHHhCCCccccc--chhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 269 VDGRATNVALGWSVALGSPFTFAT--TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~~vieT--tf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.++.+.++.++..+|.. ++.. ..-.=...++. .+..+.+...++.|+ +..+.+.|++++..+..
T Consensus 142 -~~~~~~~~~~~l~~~g~~-i~~~g~~~G~g~~~Kl~-~N~~~~~~~~~~aEa-~~la~~~Gld~~~~~~~ 208 (297)
T 4gbj_A 142 -NAGAKERIKPIVENFVKG-VFDFGDDPGAANVIKLA-GNFMIACSLEMMGEA-FTMAEKNGISRQSIYEM 208 (297)
T ss_dssp -CHHHHHHHHHHHHTTCSE-EEECCSCTTHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHTTCCHHHHHHH
T ss_pred -chhHHHHHHHHHHHhhCC-eEEecCCccHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 568899999999999964 2110 00000011111 122222333333343 34577899999876554
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=122.92 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=123.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-------ceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-------~~~~d~t~~d~~Eav~~ADIVI 183 (583)
|||+||| +|.||.+++..|.+. |++|++.+|..++..+.....| +. ..+..++++++|+||
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999988 8888877765433222222223 22 246778899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEE-EecCch--------------hhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~--------------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+++|+....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +..++.+||+.|+.......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD 144 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence 99999998899998888774 77665 456665 344443 334 47899999999888742111
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHH
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aI-G~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d 322 (583)
+.|-..+++... +.++.+.+..+++.+ |.. ++. .. + .+....+-++.|+++...++
T Consensus 145 -------~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~-~~~---~~----~-~~~a~~~k~~~~~~~~~~~~ 201 (212)
T 1jay_A 145 -------EKFDWDVPVCGD--DDESKKVVMSLISEIDGLR-PLD---AG----P-LSNSRLVESLTPLILNIMRF 201 (212)
T ss_dssp -------CCCCEEEEEEES--CHHHHHHHHHHHHHSTTEE-EEE---EE----S-GGGHHHHHTHHHHHHHHHHH
T ss_pred -------CCCCccEEEECC--cHHHHHHHHHHHHHcCCCC-cee---cc----c-hhHHHHhcchHHHHHHHHHH
Confidence 123333344444 578899999999999 963 111 11 1 34556778888988776663
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-12 Score=126.12 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=123.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch-H
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~-a 190 (583)
+||+|||+|.||.++|++|.+. |++|++++++.+ ..+.+.+.|+.. ..+++|+++ +|+||+++|+. .
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIE-AMTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTT-TSHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999998 999887766544 455666678875 678999999 99999999965 5
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
..++++++.+.+++|++|++.+.......+.. ......++.++. +|-..+.. .-. .|...++. ..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~-------~g~l~~~~-gg-- 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD-APVSGGAA---AAA-------RGELATMV-GA-- 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE-CCEESCHH---HHH-------HTCEEEEE-EC--
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHH---HHh-------cCCccEEe-cC--
Confidence 66789999999999999998877643221110 001123566664 46332222 111 23434333 33
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHH
Q 007951 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A 334 (583)
+.+..+.++.++..+|.. ++...-...-..-.+.... +.+...+++.-++..+.+.|+++++.
T Consensus 150 ~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~E~~~l~~~~G~d~~~~ 212 (296)
T 3qha_A 150 DREVYERIKPAFKHWAAV-VIHAGEPGAGTRMKLARNM-LTFTSYAAACEAMKLAEAAGLDLQAL 212 (296)
T ss_dssp CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHcCC-eEEcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 578899999999999963 2221101100000111111 12222223334445677899998865
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-12 Score=126.12 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=122.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc-hH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd-~a 190 (583)
++|+|||+|.||.+++.+|.+. |++|.+.++. +...+...+.|+.. ..+..++++++|+||+++|+ ..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 6899999999999999999988 8888766554 34455556668764 56788999999999999994 55
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNY---EKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl---~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++ +++.+.+++|++|++.+... ...+.+ .....++.++.. |-.++... ... .+... ++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-pv~~~~~~---~~~------~~~~~-~~ 141 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDA-PVSGGEPK---AID------GTLSV-MV 141 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESHHHH---HHH------TCEEE-EE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEEe-cCCCCHhH---Hhc------CCEEE-Ee
Confidence 56777 67889999999877654432 223322 111235666654 54333221 112 13333 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhh-HhhHHHH-HHHHHHHH---HHHcCCCHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI-LLGAVHG-IVESLFRR---FTENGMNEDLAYKNTV 339 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtv-LsG~~pA-lieAl~d~---~Ve~Gl~~e~A~~~~~ 339 (583)
.. +.+..+.+..++..+|.. ++.. .+..... ..- +.+...+ ++.++.|. +.+.|+++++++....
T Consensus 142 -~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~~---~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 -GG--DKAIFDKYYDLMKAMAGS-VVHT---GDIGAGN---VTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp -ES--CHHHHHHHHHHHHTTEEE-EEEE---ESTTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEEe---CCcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 578889999999999963 1111 1111111 111 1222222 34455554 7899999987766554
Q ss_pred HH
Q 007951 340 EC 341 (583)
Q Consensus 340 q~ 341 (583)
++
T Consensus 212 ~~ 213 (299)
T 1vpd_A 212 GG 213 (299)
T ss_dssp TS
T ss_pred cc
Confidence 43
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=137.08 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=105.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHhhhhcc---CCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~Eav~~---ADIVILa 185 (583)
++|+|||+|+||.++|++|.++ |++|.+++|..++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 7899999999999999999998 999888777654433333332 6764 5688898887 9999999
Q ss_pred ccc-hHHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISD-AAQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd-~a~~~Vl~eI~~~Lk~GaiL~~a~-G~~--i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
||+ +...++++++.+.+++|++|++.+ |.. ...+.+ . ....++.++ .+|...+... .. .|. +
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~-~-l~~~g~~~v-~~pv~gg~~~---a~-------~g~-~ 151 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR-E-LSAEGFNFI-GTGVSGGEEG---AL-------KGP-S 151 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHHH---HH-------HCC-E
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHCCCCee-CCccccCHhH---Hh-------cCC-e
Confidence 999 578889999999999999887664 432 122222 1 112356776 4575444331 11 245 4
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.+.. +.++.+.++.++..+|..
T Consensus 152 -i~~gg--~~~~~~~v~~ll~~~g~~ 174 (480)
T 2zyd_A 152 -IMPGG--QKEAYELVAPILTKIAAV 174 (480)
T ss_dssp -EEEES--CHHHHHHHHHHHHHHSCB
T ss_pred -EEecC--CHHHHHHHHHHHHHHhcc
Confidence 33344 478899999999999963
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=124.63 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=103.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecC-------CCcC--CHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d-------~t~~--d~~Eav~~ADI 181 (583)
|||+|||+|+||.++|.+|.++ |++|++.++. +++..+...+.|..... .... +..++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999998 9988877661 33344555555531100 0123 56778899999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEec-Cc------hhhhhhccc-ccCCC-CccEEEeccCCCchhhHHhHhccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSMG-LDFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~-G~------~i~~ie~~~-i~~p~-dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
||+++|+....++++++.+ ++++++|++.. |+ ....+.+.. -.++. ..-.++.+|+.+...
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~--------- 144 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV--------- 144 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH---------
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH---------
Confidence 9999999999999999999 99999877664 87 222222200 01111 113567778664433
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 145 ---~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~ 175 (335)
T 1txg_A 145 ---AKRMPTTVVFSS-PSESSANKMKEIFETEYFG 175 (335)
T ss_dssp ---HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred ---HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEE
Confidence 235544344443 3577888899999988863
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=136.01 Aligned_cols=148 Identities=17% Similarity=0.062 Sum_probs=105.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----cCceecCCCcCCHhhhhcc---CCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----~G~~~~d~t~~d~~Eav~~---ADIVI 183 (583)
++|||||+|+||.++|++|.++ |++|.+++|..++ .+...+ .|+.. ..++.|++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 6899999999999999999999 9998887776554 444444 46664 5688888877 99999
Q ss_pred Eeccc-hHHHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCc
Q 007951 184 LLISD-AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 184 Lavpd-~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv 259 (583)
++||+ +...++++++.+.+++|++|++.+.... ..+.+ . ....++.++ .+|-..+.. ... .|.
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~-~-l~~~g~~~v-~~pVsgg~~---~a~-------~G~ 146 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE-E-LKKKGILFV-GSGVSGGEE---GAR-------YGP 146 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHH---HHH-------HCC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH-H-HHHcCCcee-CCCcccChh---Hhh-------cCC
Confidence 99999 5778899999999999999887755432 12222 0 112356776 457333322 111 345
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
. +.+.. +.++.+.++.++..+|..
T Consensus 147 -~-im~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 147 -S-LMPGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp -E-EEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred -e-EEecC--CHHHHHHHHHHHHHhcCc
Confidence 3 33344 577899999999999963
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=121.81 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|||+|||+|+||.++|.+|.+. |++|++.++. .+...+...+.|+. .+..++++++|+||+++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999998 9988775432 33344555555664 356788899999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
+.+.+.++.+.+++ +|++.++... ..+.+ .+++. .++. +|-..++. .. +.|.+ +++..+
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~---~~~~~-g~~~-~~v~~~~~---~~-------~~g~~-~~~~g~ 130 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNISPETVRMASS---LIEKG-GFVD-AAIMGSVR---RK-------GADIR-IIASGR 130 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCCHHHHHHHHH---HCSSS-EEEE-EEECSCHH---HH-------GGGCE-EEEEST
T ss_pred HHHHHHHHHHhcCc--EEEEccCCCHHHHHHHHH---HHhhC-Ceee-eeeeCCcc---cc-------ccCCe-EEecCC
Confidence 87777888888877 7777777642 23333 23321 1332 34221211 11 13556 444333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHH---HHHcCCCHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTVE 340 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~---~Ve~Gl~~e~A~~~~~q 340 (583)
+. +.+.. ++.+|.. ++.. .+ + .+....+..+.++ ++.++.|. +++.|++++ ++....+
T Consensus 131 ~~-----~~~~~-l~~~g~~-~~~~---~~---~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~ 195 (264)
T 1i36_A 131 DA-----EEFMK-LNRYGLN-IEVR---GR---E-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEY 195 (264)
T ss_dssp TH-----HHHHG-GGGGTCE-EEEC---SS---S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHT
T ss_pred cH-----HHhhh-HHHcCCe-eEEC---CC---C-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 21 66777 8999863 2221 11 1 2232332222222 34555555 899999986 6655444
Q ss_pred H
Q 007951 341 C 341 (583)
Q Consensus 341 ~ 341 (583)
+
T Consensus 196 ~ 196 (264)
T 1i36_A 196 T 196 (264)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-12 Score=128.09 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=97.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-----------ceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-----------~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||+|+||.++|.+|.++ |++|.+++|..++ .+...+.| +.. ..++.+ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 7999999999999999999998 9998887776443 33334445 232 456777 88999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe-cCchhhhhh---cc-cccCCCCccEEEeccCCCchhhHHhHhcccccc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQ---SM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a-~G~~i~~ie---~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~ 255 (583)
+||++||+....++++++.+ ++++|+.. .|+.....+ +. .-.++ ....++.+|+.+...
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~------------ 146 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV------------ 146 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH------------
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH------------
Confidence 99999999988899888766 77776544 487532111 00 00123 224678999887665
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 256 G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.|.+..+....+ + .+.+..++...|..
T Consensus 147 ~~g~~~~~~~g~~-~---~~~~~~ll~~~g~~ 174 (335)
T 1z82_A 147 AKKLPTAVTLAGE-N---SKELQKRISTEYFR 174 (335)
T ss_dssp HTTCCEEEEEEET-T---HHHHHHHHCCSSEE
T ss_pred hCCCceEEEEEeh-h---HHHHHHHhCCCCEE
Confidence 2455433333322 1 56778888887753
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-11 Score=124.41 Aligned_cols=187 Identities=15% Similarity=0.043 Sum_probs=117.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCc------ccHHHHHHcCceecCCCcC-CHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s------~s~~~A~~~G~~~~d~t~~-d~~Eav~~ADIVI 183 (583)
+||+|||+|+||.++|.+|.+. | ++|+++++... ...+.+.+.|+ . . ++.|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999998 9 89887776531 23445555665 2 4 6788999999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccC-CCchhhHHhHhccccccCCCc
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~Pn-gPg~~vR~lf~~G~e~~G~Gv 259 (583)
+++|+....++++++.+.+++|++|++.+++... .+.+ .....++.++- +|- +|... .. |-
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d-~pv~g~~~a-----~~-------g~ 157 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVE-GAVMARVPP-----YA-------EK 157 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEE-EEECSCSTT-----TG-------GG
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-ccCCCCchh-----hc-------CC
Confidence 9999999999999999999999999988876532 2211 11123455553 241 11111 01 23
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCcccccch-hhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHH
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf-~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e 332 (583)
..+++...+ + +.++.++..+|.. ++.+.- ...-..-.+...+.+ ...-+++.-++..+.+.|++++
T Consensus 158 l~i~vgg~~----~-~~~~~ll~~~g~~-v~~~g~~~g~a~~~Kl~~N~~~-~~~~~~~~E~~~la~~~Gid~~ 224 (317)
T 4ezb_A 158 VPILVAGRR----A-VEVAERLNALGMN-LEAVGETPGQASSLKMIRSVMI-KGVEALLIEALSSAERAGVTER 224 (317)
T ss_dssp SEEEEESTT----H-HHHHHHHHTTTCE-EEEEESSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEEEEeCCh----H-HHHHHHHHHhCCC-eEEeCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 333443332 1 7888999999963 332211 011011112223222 2233344444567788999984
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.1e-12 Score=123.86 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=120.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
++|+|||+|.||.+++.+|.+ |++|++.++..++ .+...+.|+.. .. ..++++++|+||+++|+..
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~~ 68 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTRE 68 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChHH
Confidence 689999999999999999863 5677776665443 44444446653 33 6788899999999999775
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
...+++++.+.+++|++|++.+... ...+.+ .....++.++.. |..+++. ... .|...+++ ..
T Consensus 69 ~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-p~~~~~~---~~~-------~g~~~~~~-~~ 134 (289)
T 2cvz_A 69 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVSGGTS---GAE-------AGTLTVML-GG 134 (289)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEESHHH---HHH-------HTCEEEEE-ES
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEe-cCCCChh---HHh-------hCCeEEEE-CC
Confidence 6678888999999999887765543 222322 111236777775 8655443 122 24544444 32
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH----HHHHHHHH---HHHcCCCHHHHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTVE 340 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA----lieAl~d~---~Ve~Gl~~e~A~~~~~q 340 (583)
+.+..+.+..++ .+|.. ++.. .+. +....+..+.++ ++.++.|. +.+.|+++++++....+
T Consensus 135 --~~~~~~~~~~ll-~~g~~-~~~~---~~~-----~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 202 (289)
T 2cvz_A 135 --PEEAVERVRPFL-AYAKK-VVHV---GPV-----GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINA 202 (289)
T ss_dssp --CHHHHHHHGGGC-TTEEE-EEEE---EST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred --CHHHHHHHHHHH-hhcCC-eEEc---CCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHc
Confidence 578888999999 99863 2111 111 111222222222 34555555 88899999876555433
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=127.10 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=106.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec---C-------CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~---d-------~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.++|..|.++ |++|.++.+.. ...+...+.|.... + ....++.++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~-~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYES-DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCH-HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7899999999999999999998 99888776653 33444444442110 0 013578889999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEE-EecCchhh------hhhcccccCCCCccEEEeccCCCchhhHHhHhccccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i~------~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~ 254 (583)
||+++|++...+++++|.++++++++|+ .+.|+... .+++ .+|...-.+...|+.....
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----------- 168 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----------- 168 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH-----------
Confidence 9999999999999999999999998754 56777542 2322 2333223567778665433
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 255 ~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 169 -~~g~pt~~via~-~~~~~~~~v~~lf~~~~~r 199 (356)
T 3k96_A 169 -AANLPTAVSLAS-NNSQFSKDLIERLHGQRFR 199 (356)
T ss_dssp -HTTCCEEEEEEE-SCHHHHHHHHHHHCCSSEE
T ss_pred -HcCCCeEEEEec-CCHHHHHHHHHHhCCCCee
Confidence 245666454443 3567778888888877753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-11 Score=120.63 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=103.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
+||+|||+|.||.+++.+|.+. |++|++.++. ....+...+.|+.. ..+..++++++|+||+++|+..
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999988 8888766554 33445555557764 5678899999999999997554
Q ss_pred HHHHHH---HHHhcCCCCcEEEEe-cCc--hhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLS-HGF--LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a-~G~--~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++. ++.+.+++|++|++. .|. ....+.+ .....++.++. +|..++.. .... |...+++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~--~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~~ 140 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK--VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIMV 140 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH--HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEEE
Confidence 567775 788899999987654 444 2333322 01113566664 57544432 2222 4434344
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC
Q 007951 265 VHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~ 287 (583)
.. +.+..+.+..++..+|..
T Consensus 141 -~g--~~~~~~~v~~ll~~~g~~ 160 (301)
T 3cky_A 141 -GA--SEAVFEKIQPVLSVIGKD 160 (301)
T ss_dssp -ES--CHHHHHHHHHHHHHHEEE
T ss_pred -CC--CHHHHHHHHHHHHHhcCC
Confidence 33 678889999999999964
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-11 Score=123.33 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=107.7
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-------ceEEEEecCCc----ccHHHHHHcC------
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS----RSFAEARAAG------ 161 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-------~~ViVg~r~~s----~s~~~A~~~G------ 161 (583)
..|...++ .++||+|||+|+||.++|.+|.++ | ++|+++++..+ +..+...+.+
T Consensus 12 ~~~~~~~~---~~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~ 82 (375)
T 1yj8_A 12 NLFDKLKD---GPLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82 (375)
T ss_dssp SHHHHHHH---SCBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTS
T ss_pred HHHhcCcc---CCCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccC
Confidence 44554433 236899999999999999999988 7 88887776543 0233322222
Q ss_pred --------ceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHh----cCCCCcEEEEe-cCchhh---------hh
Q 007951 162 --------FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLS-HGFLLG---------HL 219 (583)
Q Consensus 162 --------~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~----~Lk~GaiL~~a-~G~~i~---------~i 219 (583)
+.. ..++.++++++|+||++||++...+++++|.+ .++++++|+.. .|+... .+
T Consensus 83 ~~~~~~~~i~~----~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l 158 (375)
T 1yj8_A 83 KGVPLPHNIVA----HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYI 158 (375)
T ss_dssp TTCBCCTTEEE----ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHH
T ss_pred CcccCcCCeEE----ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHH
Confidence 222 35677889999999999999999999999999 99999976654 476431 11
Q ss_pred hcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 220 e~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.. .++.+ -.++.+|+.+... +.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 159 ~~---~~~~~-~~v~~gp~~a~~v------------~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~ 209 (375)
T 1yj8_A 159 SD---FLNIP-CSALSGANIAMDV------------AMENFSEATIGG-NDKDSLVIWQRVFDLPYFK 209 (375)
T ss_dssp HH---HSSSC-EEEEECSCCHHHH------------HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred HH---HcCCC-EEEEeCCchHHHH------------HhCCCeEEEEec-CCHHHHHHHHHHhCCCCeE
Confidence 11 12322 3567888776543 245555444333 3567888889999988853
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=122.75 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=122.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch-H
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~-a 190 (583)
+||+|||+|.||.++|++|.+. |++|+++++. ....+...+.|+.. ..+..|++++||+||+++|+. .
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEECCCHHH
Confidence 8999999999999999999998 9998777655 34455666668775 678999999999999999964 5
Q ss_pred HHHHHH--HHHhcCCCCcEEEEecCchhhhhhcc-cccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 191 QADNYE--KIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 191 ~~~Vl~--eI~~~Lk~GaiL~~a~G~~i~~ie~~-~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
...++. ++.+.+++|++|++.+.......+.. ......++.++. +|-..+.. .-.. |...+++ ..
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~i~~-gg 168 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTV---GAEQ-------GTLVIMA-GG 168 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHH---HHHH-------TCEEEEE-ES
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHh---HHhc-------CCeeEEe-CC
Confidence 567777 78889999999998877643221110 001123566765 46333222 1112 3434333 33
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh-hHhhHHH----HHHHHHHHHHHHcCCCHHHHHHH
Q 007951 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVH----GIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 268 d~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt-vLsG~~p----AlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+.++.+.++.+++.+ . .++... +... ++.. .+.+.+- +++.-++..+.+.|+++++.+..
T Consensus 169 --~~~~~~~~~~ll~~~-~-~~~~~g---~~g~---a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~ 233 (320)
T 4dll_A 169 --KPADFERSLPLLKVF-G-RATHVG---PHGS---GQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEA 233 (320)
T ss_dssp --CHHHHHHHHHHHHHH-E-EEEEEE---STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc-C-CEEEeC---CccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 578899999999999 4 332211 1000 1111 1122222 23333445567889998865543
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=119.52 Aligned_cols=193 Identities=11% Similarity=0.053 Sum_probs=120.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH-
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a- 190 (583)
+||+|||+|.||.+++.+|.+. |++|++.+ + ....+...+.|+.. ..+..++++++|+||+++|+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 71 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARA------GHQLHVTT-I-GPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTPQ 71 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-S-SCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-C-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHHH
Confidence 7999999999999999999988 88887665 4 33444555557764 5678899999999999998776
Q ss_pred HHHHHH---HHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 191 QADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 191 ~~~Vl~---eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
...++. ++.+.+++|++|++.+... ...+.+ .....++.++ -+|...+.. ... .|...+++
T Consensus 72 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~-~~p~~~~~~---~a~-------~g~~~~~~ 138 (295)
T 1yb4_A 72 VEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ--RVNEMGADYL-DAPVSGGEI---GAR-------EGTLSIMV 138 (295)
T ss_dssp HHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEE-ECCEESHHH---HHH-------HTCEEEEE
T ss_pred HHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-EccCCCCHH---HHH-------cCCeEEEE
Confidence 467877 7888899999877654442 222322 0112345554 235332221 122 24444343
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh-hHhhHHHH-HHHHHHHH---HHHcCCCHHHHHHHHH
Q 007951 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLFRR---FTENGMNEDLAYKNTV 339 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt-vLsG~~pA-lieAl~d~---~Ve~Gl~~e~A~~~~~ 339 (583)
.. +.+..+.+..++..+|.. ++.. .+.... ... .+.+...+ ++.++.|. +.+.|++++.++....
T Consensus 139 -~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~---~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~ 208 (295)
T 1yb4_A 139 -GG--EQKVFDRVKPLFDILGKN-ITLV---GGNGDG---QTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALM 208 (295)
T ss_dssp -ES--CHHHHHHHHHHHHHHEEE-EEEE---ESTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHhcCC-EEEe---CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 678889999999999963 2111 111111 111 12232222 33444444 8889999876655543
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=124.02 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=102.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------------ceecCCCcCCHhhhhcc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETISG 178 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~d~t~~d~~Eav~~ 178 (583)
||+|||+|+||.++|.+|.++ |++|.++++..+ ..+...+.| +.. ..++.+++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 85 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYNG 85 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHTT
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccccccccccceee----eCCHHHHHcC
Confidence 899999999999999999988 888877766533 344444433 221 3577888999
Q ss_pred CCeEEEeccchHHHHHHHH----HHhcCCC-CcEEEEec-Cchhhhh---hcc-cccCCCCccEEEeccCCCchhhHHhH
Q 007951 179 SDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QSM-GLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~e----I~~~Lk~-GaiL~~a~-G~~i~~i---e~~-~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
+|+||+++|+....+++++ |.+++++ |++|+++. |+..... .+. .-.++.....++.+|+.+...
T Consensus 86 aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~----- 160 (366)
T 1evy_A 86 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV----- 160 (366)
T ss_dssp CSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH-----
T ss_pred CCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH-----
Confidence 9999999999988999998 9999988 88766554 8754211 000 002232223577888776543
Q ss_pred hccccccCCCceEEEeecCCCCHHHHHHHHHHHHHh
Q 007951 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (583)
Q Consensus 249 ~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aI 284 (583)
+.|.+.++.+. ..+.+..+.+..++...
T Consensus 161 -------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 -------ATGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp -------HTTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred -------HhCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 24555534433 33567888899999988
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=125.48 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=104.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHhhhhcc---CCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~Eav~~---ADIVILa 185 (583)
++|+|||+|+||.++|++|.+. |++|.+.+|..++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999998 998887776544433333333 6664 5688888876 9999999
Q ss_pred ccch-HHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 186 vpd~-a~~~Vl~eI~~~Lk~GaiL~~a~-G~~--i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
||+. ...++++++.+.+++|++|++.+ |.. ...+.+ .....++.++ .+|...+... -. .|..
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~-------~g~~- 141 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA--ELADSGINFI-GTGVSGGEKG---AL-------LGPS- 141 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HTTTSSCEEE-EEEECSHHHH---HH-------HCCC-
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCeEE-CCCCCCChhh---hc-------cCCe-
Confidence 9995 67789999999999999887665 432 222322 1222466676 4676544331 11 2443
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~~ 287 (583)
++ +.. +.+..+.++.++..+|..
T Consensus 142 i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 142 MM-PGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp EE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred EE-ecC--CHHHHHHHHHHHHHHhcc
Confidence 23 333 578899999999999964
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=117.63 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=104.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-------ceEEEEecCCcc----cHHHHHHcC--------------ceecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-------~~ViVg~r~~s~----s~~~A~~~G--------------~~~~d 166 (583)
+||+|||+|+||.++|.+|.++ | ++|.+.++.... ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 6999999999999999999988 8 788777765440 233333221 121
Q ss_pred CCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEE-EecCchh---------hhhhcccccCCCCccEEEec
Q 007951 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL---------GHLQSMGLDFPKNIGVIAVC 236 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i---------~~ie~~~i~~p~dv~VI~v~ 236 (583)
..+..++++++|+||+++|++...+++++|.++++++++|+ .+.|+.+ ..+.. .++.+ ..++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGIP-MSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTCC-EEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCCC-EEEEEC
Confidence 35677889999999999999999999999999999998765 4456642 11121 12322 457888
Q ss_pred cCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 237 PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|+.+... +.|.+..+.+. ..+.+..+.+..++...|..
T Consensus 155 p~~a~~v------------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~ 192 (354)
T 1x0v_A 155 ANIASEV------------ADEKFCETTIG-CKDPAQGQLLKELMQTPNFR 192 (354)
T ss_dssp SCCHHHH------------HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEE
T ss_pred CCcHHHH------------HhcCCceEEEE-ECCHHHHHHHHHHhCCCCEE
Confidence 9876544 24555444443 23567888889999988853
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.3e-11 Score=122.98 Aligned_cols=150 Identities=16% Similarity=0.117 Sum_probs=108.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccC---CeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A---DIVIL 184 (583)
+++ +||+|||+|.||.++|++|.+. |++|+++++. ....+.+.+.|+.. ..++.|+++++ |+||+
T Consensus 20 m~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 20 FQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEE
T ss_pred hcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEE
Confidence 445 8999999999999999999998 9998777665 34456666778774 57899999999 99999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~a 261 (583)
++|+....++++++.+.+++|++|++.+..... .+.. .....++.++. +|-.-+.. .-. .|. .
T Consensus 88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vd-apVsGg~~---~a~-------~G~-~ 153 (358)
T 4e21_A 88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVD-VGTSGGIF---GLE-------RGY-C 153 (358)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEE-EEEECGGG---HHH-------HCC-E
T ss_pred eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEe-CCCCCCHH---HHh-------cCC-e
Confidence 999997788999999999999999988766421 1111 12234677764 35222221 111 234 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCC
Q 007951 262 SFAVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 262 liAv~qd~sgeale~a~ala~aIG~ 286 (583)
+.+.. +.++.+.++.++..+|.
T Consensus 154 -im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 154 -LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp -EEEES--CHHHHHHTHHHHHHHSC
T ss_pred -eeecC--CHHHHHHHHHHHHHhcc
Confidence 34444 57899999999999994
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=124.01 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=103.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHH-cCceecC--CC-------cCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~-~G~~~~d--~t-------~~d~~Eav~~AD 180 (583)
|||+|||+|+||.++|.+|.++. ....| ++|++..| +...+...+ .|+...+ +. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~-~~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRA-AATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHH-HHTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCc-cccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 58999999999999999998640 00004 67777766 344555555 6876411 00 013345678999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCC
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i-~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~G 258 (583)
+||+++|+....++++++.++++++++|+ ...|+.. ..+.+ .+|+. .+++.+|+.+.......... ..+.|
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~pg~~~---~~~~g 158 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSAPGLIT---LEADR 158 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEETTEEE---EEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcCCCEEE---EcCCC
Confidence 99999999999999999999999888654 5678764 34443 34443 56667775544431000000 01233
Q ss_pred ceEEEeec-CCCCHHHHHHHHHHHHHhCCC
Q 007951 259 INSSFAVH-QDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 259 v~aliAv~-qd~sgeale~a~ala~aIG~~ 287 (583)
...+++.. ...+.+.. .+..++...|..
T Consensus 159 ~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~ 187 (317)
T 2qyt_A 159 ELFYFGSGLPEQTDDEV-RLAELLTAAGIR 187 (317)
T ss_dssp EEEEEECCSSSCCHHHH-HHHHHHHHTTCC
T ss_pred ceEEEcCCCCCCcCHHH-HHHHHHHHCCCC
Confidence 33324433 33345666 788999999964
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-11 Score=130.68 Aligned_cols=148 Identities=17% Similarity=0.054 Sum_probs=103.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----cCceecCCCcCCHhhhhc---cCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETIS---GSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----~G~~~~d~t~~d~~Eav~---~ADIVI 183 (583)
++|+|||+|.||.++|++|.+. |++|.+.+|..++ .+...+ .|+.. ..+++++++ ++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5899999999999999999998 9998877776544 444444 56654 567888874 899999
Q ss_pred Eeccch-HHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCc
Q 007951 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (583)
Q Consensus 184 Lavpd~-a~~~Vl~eI~~~Lk~GaiL~~a~-G~~--i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv 259 (583)
++||+. ...++++++.+++++|++|++.+ |.. ...+.+ . ....++.++ .+|...+... -. .|.
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~-~-l~~~g~~~v-~~pv~g~~~~---a~-------~g~ 138 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR-D-LKDKGILFV-GSGVSGGEDG---AR-------YGP 138 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHHH---HH-------HCC
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHcCCeEe-CCCCCCChhh---hc-------cCC
Confidence 999996 67889999999999999887664 432 112222 1 112356676 4675443321 11 345
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 260 ~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.+ .+.. +.++.+.+..++..+|..
T Consensus 139 -~i-~~gg--~~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 139 -SL-MPGG--NKEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp -EE-EEEE--CTTTHHHHHHHHHHHSCB
T ss_pred -eE-EeCC--CHHHHHHHHHHHHHhhhh
Confidence 32 3333 357888999999999974
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=125.68 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=102.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-------ceecCCCcCCHhhhhcc---CCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-------~~~~d~t~~d~~Eav~~---ADI 181 (583)
|+|+|||+|+||.++|.+|.+. |++|.+.+|..++..+...+.| +.. ..+++|++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999998 9998877776444334444446 443 5678888874 999
Q ss_pred EEEeccch-HHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCC
Q 007951 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (583)
Q Consensus 182 VILavpd~-a~~~Vl~eI~~~Lk~GaiL~~a~-G~~--i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~ 257 (583)
||++||+. ...++++++.+.+++|++|++.+ |.. ...+.+ . ....++.++. +|...+... -. .
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~-~-l~~~g~~~v~-~pv~gg~~~---a~-------~ 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLG-MGISGGEEG---AR-------K 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEE-EEEESHHHH---HH-------H
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH-H-HHHCCCeEEE-eeccCCHHH---Hh-------c
Confidence 99999995 67889999999999999887654 442 222222 1 1123566663 575444331 11 2
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 258 GINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 258 Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|. .++ +.. +.++.+.+..++..+|..
T Consensus 139 g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 44 333 333 578899999999999974
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=117.74 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=95.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---Cc--eecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~--~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|||+|||+|+||.++|.+|.++ |++|++.+|..++..+ .... |. .. .-.. +..++++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~-~~~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTA-NDPDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEE-SCHHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeee-cCccccCCCCEEEEEe
Confidence 5899999999999999999998 9998887765432211 1111 11 00 0012 2346788999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhcccccCCC---Cc---cEEEeccCCCchhhHHhHhccccccCCC
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPK---NI---GVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~i-~~ie~~~i~~p~---dv---~VI~v~PngPg~~vR~lf~~G~e~~G~G 258 (583)
|+....++++++.++++++++|+ ...|+.. ..+.+ .+++ ++ ...+.+| .+... +.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~~~~g~~~~~~~~~~p-~~~~~------------~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQPLLMGTTTHAARRDGN-VIIHV------------ANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSCEEEEEECCEEEEETT-EEEEE------------ECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCCeEEEEEeEccEEcCC-EEEEe------------ccc
Confidence 99999999999999999998655 5677754 23333 2333 00 1123344 22211 356
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 259 v~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
... +.+.. .+.+..+.+..++..+|..
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~ 162 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPD 162 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSC
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCC
Confidence 644 44432 2345677888999999965
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=129.84 Aligned_cols=192 Identities=9% Similarity=0.049 Sum_probs=126.2
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceec---------CCCc
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTL 169 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~---------d~t~ 169 (583)
.++||+|||+|.||.++|.+|.++ |++|++.+++.+ ..+.+ .+.|.... -...
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 385 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 385 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred cCCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE
Confidence 358999999999999999999998 999887766533 23332 22342100 0013
Q ss_pred CCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.++ +++++||+||+++|++.. ..++.++.++++++++|+ .++++.+..+.. .....-+|+..||..|...
T Consensus 386 ~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~--- 458 (715)
T 1wdk_A 386 LSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM--- 458 (715)
T ss_dssp SSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT---
T ss_pred CCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc---
Confidence 455 778999999999997763 468889999999999875 567777765544 2223347999999777654
Q ss_pred hHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHH
Q 007951 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFT 325 (583)
Q Consensus 247 lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~V 325 (583)
+-...+.++...+.+.++.+..+++.+|...+.- .+. .-| +..-.+.+ +.|+ . .++
T Consensus 459 -----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v----~d~--~Gf----i~Nril~~~~~Ea-~-~l~ 515 (715)
T 1wdk_A 459 -----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV----NDC--PGF----LVNRVLFPYFGGF-A-KLV 515 (715)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE----ESC--TTT----THHHHHHHHHHHH-H-HHH
T ss_pred -----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEE----cCC--CCh----hhhHHHHHHHHHH-H-HHH
Confidence 1223345677789999999999999999642211 111 112 11222223 4444 3 355
Q ss_pred HcCCCHHHHHHHH
Q 007951 326 ENGMNEDLAYKNT 338 (583)
Q Consensus 326 e~Gl~~e~A~~~~ 338 (583)
+.|+++++.....
T Consensus 516 ~~G~~~~~id~~~ 528 (715)
T 1wdk_A 516 SAGVDFVRIDKVM 528 (715)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHH
Confidence 5699998755543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=135.70 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=120.0
Q ss_pred eeecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007951 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (583)
Q Consensus 93 v~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d 171 (583)
-++.|+|.... ....+.| ++|||||+|+||.++|++|+.. |.+|+++++.. +.+.+.+.|+.. .+
T Consensus 124 ~~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~-----~~ 189 (529)
T 1ygy_A 124 SLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL-----LS 189 (529)
T ss_dssp HHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-----CC
T ss_pred HHHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-----cC
Confidence 34567775322 2356889 9999999999999999999987 88887665543 345677788874 37
Q ss_pred HhhhhccCCeEEEeccch-HHHHHHHH-HHhcCCCCcEEEEecCch-h------hhhhcccccCCCCccEEEeccCCCch
Q 007951 172 IYETISGSDLVLLLISDA-AQADNYEK-IFSCMKPNSILGLSHGFL-L------GHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~-a~~~Vl~e-I~~~Lk~GaiL~~a~G~~-i------~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
.++++++||+|++++|+. ....++.+ +.+.||+|++|++++-.. + ..+.+..+. ...++|+..||. +.+
T Consensus 190 l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~-ga~lDv~~~eP~-~~~ 267 (529)
T 1ygy_A 190 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR-AAGLDVFATEPC-TDS 267 (529)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE-EEEESSCSSSSC-SCC
T ss_pred HHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCcc-EEEEeeccCCCC-CCc
Confidence 889999999999999988 66677764 888999999988664221 1 111111110 124678888883 322
Q ss_pred hhHHhHhccccccCCCceEEEeecCC-CCHHHHHH-----HHHHHHHhCCC
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSP 287 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~-----a~ala~aIG~~ 287 (583)
.+|. +-+++++||.. .+.++.+. +..+...++..
T Consensus 268 ---~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 268 ---PLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp ---GGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---hHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 2443 46888999998 77887775 77888888874
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-12 Score=125.85 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=104.5
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
.++ ++|+|||+|+||.+++.+|.+. |++|++..|... .+.....|+. ..+..++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH 82 (201)
Confidence 556 8999999999999999999988 888877666533 2333334554 2377788999999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE-EecCch--------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCC
Q 007951 188 DAAQADNYEKIFSCMKPNSILG-LSHGFL--------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~-~a~G~~--------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~G 258 (583)
++...+++ ++.+ +++|++|+ .+.|+. ..+++. .++. ..+|+++||+|.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~- 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S- 150 (201)
Confidence 98777776 5554 45677654 667774 244443 3343 5899999999988742111111 0
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 259 v~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
...+++ .. +.++++.+..++.++|..
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 123233 33 467889999999999964
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=123.37 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=108.9
Q ss_pred eeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 93 v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
-+|.|+|.. .....+.| ++|||||+|+||.++|+.|+.. |.+|++.++..++ ..+.+.|+.. .+.
T Consensus 126 ~~~~g~w~~-~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~l 190 (313)
T 2ekl_A 126 LAKSGIFKK-IEGLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-----VSL 190 (313)
T ss_dssp HHHTTCCCC-CCCCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----CCH
T ss_pred HHHcCCCCC-CCCCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee-----cCH
Confidence 345677852 23467889 9999999999999999999988 9998776665433 3466778763 478
Q ss_pred hhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEecCchh-------hhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~i-------~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
++++++||+|++++|... ...++ ++..+.||+|++|+.++--.+ ..+++..+. ...+||+..+|. |...
T Consensus 191 ~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~-ga~lDv~~~eP~-~~~~ 268 (313)
T 2ekl_A 191 EELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY-AYATDVFWNEPP-KEEW 268 (313)
T ss_dssp HHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE-EEEESCCSSSSC-CSHH
T ss_pred HHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc-EEEEecCCCCCC-CCcc
Confidence 899999999999999765 34455 457788999999886644321 112221111 124688888884 3332
Q ss_pred hHHhHhccccccCCCceEEEeecCC-CCHHHHHHH
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~a 277 (583)
...+|.. -+.+++||.. .+.++.+.+
T Consensus 269 ~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 269 ELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred cchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 3356653 6788999874 455554433
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=123.55 Aligned_cols=152 Identities=17% Similarity=0.071 Sum_probs=103.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC-CCcCCHhhhhc---cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d-~t~~d~~Eav~---~ADIVILavp 187 (583)
++|||||+|.||.++|++|.+. |++|+++++..++ .+...+.|..... ....+++|+++ ++|+||++||
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 7899999999999999999999 9998887776544 4444444321000 00367888887 5999999999
Q ss_pred ch-HHHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 188 DA-AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 188 d~-a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
+. ...++++++.++|++|++|++.+..... .+.. . ....++.++.. |-.-+.. .-.. |. + +
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~-~-l~~~Gi~fvd~-pVsGg~~---gA~~-------G~-~-i 142 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR-D-LKAKGILFVGS-GVSGGEE---GARY-------GP-S-L 142 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEEEE-EEESHHH---HHHH-------CC-E-E
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH-H-HHhhccccccC-CccCCHH---HHhc-------CC-e-e
Confidence 95 6678999999999999999988665421 1111 1 11346777763 6322221 1122 34 4 3
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 007951 264 AVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~ 287 (583)
.+.. +.++.+.++.+++.+|..
T Consensus 143 m~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 143 MPGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp EEEE--CGGGHHHHHHHHHHHSCB
T ss_pred ecCC--CHHHHHHHHHHHHHhcCc
Confidence 3454 468899999999999964
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=117.25 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=122.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec-------CCCcCCH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-------d~t~~d~ 172 (583)
+++|+|||+|.||.++|..|..+ |++|++.+++ +...+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 48999999999999999999988 9998776554 333333322 221100 0002355
Q ss_pred hhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEEE-ecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHh
Q 007951 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~~-a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~ 249 (583)
+.+++||+||+++|.+.. .+++.++.++++++++|+. ++++.+..+.. .....-.++..||-.|...
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 678899999999998653 5688899999999998764 45565555544 2233457999999766543
Q ss_pred ccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHH-HHHHHHHHHHHHHcC
Q 007951 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTENG 328 (583)
Q Consensus 250 ~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~-pAlieAl~d~~Ve~G 328 (583)
+-...+.++...+.+.++.+..+++.+|...+.- .+ ..-| +++-+ .+++...+ .+++.|
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v----~~--~~gf-----i~Nrll~~~~~ea~-~l~~~G 239 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV----GN--CYGF-----VGNRMLAPYYNQGF-FLLEEG 239 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEB----CC--STTT-----THHHHHHHHHHHHH-HHHHTT
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE----CC--CccH-----HHHHHHHHHHHHHH-HHHHcC
Confidence 1233456677788999999999999999642111 11 1222 22222 22333333 455669
Q ss_pred CCHHHHHHH
Q 007951 329 MNEDLAYKN 337 (583)
Q Consensus 329 l~~e~A~~~ 337 (583)
+++++....
T Consensus 240 ~~~~~id~~ 248 (463)
T 1zcj_A 240 SKPEDVDGV 248 (463)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999876554
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=115.54 Aligned_cols=152 Identities=21% Similarity=0.172 Sum_probs=103.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC--CC--------cCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GT--------LGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d--~t--------~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.++|..|.++ |++|.+..|.. .+...+.|+.... +. +.+. +.++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 6899999999999999999998 88888777753 3555667764311 00 1233 44789999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcE-EEEecCch-hhhhhcccccCCCCccEEEec------cCCCchhhHHhHhcccc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-i~~ie~~~i~~p~dv~VI~v~------PngPg~~vR~lf~~G~e 253 (583)
||++||+....+++++|.++++++++ |+...|+. ...+.+ .+|++ +|+..+ -.+|+... .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE-----E---
Confidence 99999999999999999999999886 55778985 444544 34432 455443 34566652 1
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 254 ~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.|.|... ++.....+.+..+.+.+++...|..
T Consensus 141 -~~~g~~~-ig~~~~~~~~~~~~l~~~l~~~g~~ 172 (312)
T 3hn2_A 141 -LGAGRII-LGEFLPRDTGRIEELAAMFRQAGVD 172 (312)
T ss_dssp -CEEEEEE-EEESSCCCSHHHHHHHHHHHHTTCC
T ss_pred -CCCCeEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 1234333 4444434456667778888888865
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=118.45 Aligned_cols=158 Identities=18% Similarity=0.102 Sum_probs=107.2
Q ss_pred eecccccc-ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f-~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
+|.|+|.- ......+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+ +.+.+.|+. ..+.
T Consensus 125 ~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~l 190 (307)
T 1wwk_A 125 MREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK-----FVDL 190 (307)
T ss_dssp HTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE-----ECCH
T ss_pred HHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc-----ccCH
Confidence 45567752 122357889 9999999999999999999987 9988776665433 456777876 3478
Q ss_pred hhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
++++++||+|++++|... ...++ ++..+.||+|++|+.++--. ...+++..+. ...++|+..+|.-+.+
T Consensus 191 ~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~-ga~lDv~~~eP~~~~~- 268 (307)
T 1wwk_A 191 ETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA-GAGLDVFEEEPLPKDH- 268 (307)
T ss_dssp HHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS-EEEESCCSSSSCCTTC-
T ss_pred HHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc-EEEEecCCCCCCCCCC-
Confidence 899999999999999765 34555 35778899999988664432 2223222111 2356778778842322
Q ss_pred hHHhHhccccccCCCceEEEeecCC-CCHHHHHHH
Q 007951 244 VRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (583)
Q Consensus 244 vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~a 277 (583)
.+|. .-+.+++||.. .+.++.+.+
T Consensus 269 --~L~~--------~~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 269 --PLTK--------FDNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp --GGGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred --hHHh--------CCCEEECCccccCcHHHHHHH
Confidence 2443 36888999874 445554443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=112.84 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=92.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.+ ++|+|||+|+||.++|..|.+. |++|++.++..+ ++++||+||+++
T Consensus 16 ~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~av 65 (209)
T 2raf_A 16 YFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMAV 65 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEECS
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEcC
Confidence 3556 8999999999999999999998 988877655422 346799999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEE-ecCch---------------hhhhhcccccCCCCccEEE-eccCCCchhhHHhHh
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFL---------------LGHLQSMGLDFPKNIGVIA-VCPKGMGPSVRRLYV 249 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~-a~G~~---------------i~~ie~~~i~~p~dv~VI~-v~PngPg~~vR~lf~ 249 (583)
|+....++++++.+.++ +++|++ +.|+. ...+++ .+| +.+|++ ++| ..++.....-.
T Consensus 66 ~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~-~~~p~~~~~~~ 139 (209)
T 2raf_A 66 PYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNT-TFAATLQSGQV 139 (209)
T ss_dssp CHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTT-SCHHHHHHSEE
T ss_pred CcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeec-ccHhhcccccc
Confidence 99999999999998888 887664 46664 233333 334 468888 554 22332211111
Q ss_pred ccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 250 ~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
. |.+...++. .. .+.++.+.+..++..+|..
T Consensus 140 ~-----g~~~~~~~~-~g-~~~~~~~~v~~ll~~~G~~ 170 (209)
T 2raf_A 140 N-----GKEPTTVLV-AG-NDDSAKQRFTRALADSPLE 170 (209)
T ss_dssp T-----TTEECEEEE-EE-SCHHHHHHHHHHTTTSSCE
T ss_pred C-----CCCCceeEE-cC-CCHHHHHHHHHHHHHcCCc
Confidence 1 112333222 22 2568899999999999963
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=7e-11 Score=122.00 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=105.8
Q ss_pred eeeccccc-c---ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec-CCcccHHHHHHcCceecCC
Q 007951 93 IVRGGRDL-F---NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENG 167 (583)
Q Consensus 93 v~~~~r~~-f---~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s~~~A~~~G~~~~d~ 167 (583)
-+|.|+|. + ......+.| ++|||||+|+||.++|+.|+.. |.+|++.++ ...+ ..+.+.|+..
T Consensus 125 ~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~~~--- 192 (320)
T 1gdh_A 125 MIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQATF--- 192 (320)
T ss_dssp HHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTCEE---
T ss_pred HHHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCcEE---
Confidence 34556774 2 122357889 9999999999999999999987 888877666 4333 3566678763
Q ss_pred CcCCHhhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccC
Q 007951 168 TLGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPK 238 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~Pn 238 (583)
..+.++++++||+|++++|... ...++ ++..+.||+|++|+.++.-. ...+++..+. ....+|+..+|
T Consensus 193 -~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~-gA~lDv~~~eP- 269 (320)
T 1gdh_A 193 -HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA-YAGFDVFAGEP- 269 (320)
T ss_dssp -CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTTT-
T ss_pred -cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc-EEEEeCCCCCC-
Confidence 3478899999999999999754 44566 35778999999888654322 1122221111 23456666677
Q ss_pred CCchhhHHhHhccccccCCCceEEEeecCC-CCHHHHHHHH
Q 007951 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (583)
Q Consensus 239 gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale~a~ 278 (583)
.+.+ .+|. .-+.+++||.. .+.++.+.+.
T Consensus 270 ~~~~---~L~~--------~~nviltPH~~~~t~~~~~~~~ 299 (320)
T 1gdh_A 270 NINE---GYYD--------LPNTFLFPHIGSAATQAREDMA 299 (320)
T ss_dssp SCCT---TGGG--------CTTEEECSSCTTCBHHHHHHHH
T ss_pred CCCC---hhhh--------CCCEEECCcCCcCcHHHHHHHH
Confidence 2222 3444 36889999974 4555544443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-09 Score=114.04 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=119.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------------------cC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~d~t~~d 171 (583)
|||+|||+|.||.++|..|.+. |++|++.++. ++..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999998 9987665544 333333333 23 332 457
Q ss_pred HhhhhccCCeEEEeccchH----------HHHHHHHHHhcCCC---CcEEEEecCchhhh----h----hcc-cccCCCC
Q 007951 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH----L----QSM-GLDFPKN 229 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a----------~~~Vl~eI~~~Lk~---GaiL~~a~G~~i~~----i----e~~-~i~~p~d 229 (583)
..+++++||+||+|+|... ..+++++|.+++++ |++|++.+++.... + +.. +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 7788999999999998655 77888999999999 99887765443221 1 110 1111122
Q ss_pred ccEEEeccC--CCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh
Q 007951 230 IGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (583)
Q Consensus 230 v~VI~v~Pn--gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt 307 (583)
.. +...|. .||..+.+.+. .+.++ +..+ ++++.+.+..++..+|.. ++.+.... .+.-.+.+.+
T Consensus 150 ~~-v~~~Pe~~~~G~~~~~~~~---------~~~iv-~G~~-~~~~~~~~~~l~~~~~~~-v~~~~~~~-ae~~Kl~~N~ 215 (436)
T 1mv8_A 150 FG-VGTNPEFLRESTAIKDYDF---------PPMTV-IGEL-DKQTGDLLEEIYRELDAP-IIRKTVEV-AEMIKYTCNV 215 (436)
T ss_dssp BE-EEECCCCCCTTSHHHHHHS---------CSCEE-EEES-SHHHHHHHHHHHTTSSSC-EEEEEHHH-HHHHHHHHHH
T ss_pred EE-EEECcccccccccchhccC---------CCEEE-EEcC-CHHHHHHHHHHHhccCCC-EEcCCHHH-HHHHHHHHHH
Confidence 33 344553 33443332222 11212 2222 578889999999999963 32232221 1111111211
Q ss_pred hHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 308 ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 308 vLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.....-+++..+...+.+.|+++++...
T Consensus 216 -~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 243 (436)
T 1mv8_A 216 -WHAAKVTFANEIGNIAKAVGVDGREVMD 243 (436)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 1112234777788888899999875443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-10 Score=118.76 Aligned_cols=156 Identities=16% Similarity=0.072 Sum_probs=107.5
Q ss_pred eeecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007951 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (583)
Q Consensus 93 v~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d 171 (583)
-+|.|+|.... ....+.| ++|||||+|.||.++|+.|+.. |.+|+++++..++ +.+.+.|+. ..+
T Consensus 147 ~~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~ 212 (335)
T 2g76_A 147 SMKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-----QLP 212 (335)
T ss_dssp HHHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE-----ECC
T ss_pred HHHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce-----eCC
Confidence 34567775321 2356889 9999999999999999999977 8888766655333 456677876 347
Q ss_pred HhhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCCch
Q 007951 172 IYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
.++++++||+|++++|... ...++ +++.+.||+|++|+.++--. ...+++..+. ...++|+..+| .+.
T Consensus 213 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~-gA~lDV~~~EP-~~~- 289 (335)
T 2g76_A 213 LEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA-GAALDVFTEEP-PRD- 289 (335)
T ss_dssp HHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE-EEEESCCSSSS-CSC-
T ss_pred HHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc-EEEEeecCCCC-CCC-
Confidence 8999999999999999775 44566 46888999999988764432 1222221111 12467888888 332
Q ss_pred hhHHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
..+|.. -+.+++||.. .+.++.+
T Consensus 290 --~~L~~~--------~nvilTPH~~~~t~e~~~ 313 (335)
T 2g76_A 290 --RALVDH--------ENVISCPHLGASTKEAQS 313 (335)
T ss_dssp --CHHHHS--------TTEEECSSCTTCBHHHHH
T ss_pred --chHHhC--------CCEEECCcCCCCCHHHHH
Confidence 235543 6888999873 4555544
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-09 Score=119.74 Aligned_cols=191 Identities=12% Similarity=0.054 Sum_probs=122.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceec-------C--CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-------d--~t~~ 170 (583)
++||+|||.|.||.++|.+|.++ |++|++.+++.+ ..+.+.+ .|.... + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHH-HHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 48999999999999999999998 999887766533 3333221 232100 0 0123
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+. +++++||+||+++|++.. ..++.++.++++++++|+ .++++.+..+.. .....-+|+..|+--|...
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 45 678999999999998764 468889999999999875 567777665544 2222236899998555543
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhhHHHH-HHHHHHHHHHH
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTE 326 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG~~pA-lieAl~d~~Ve 326 (583)
+-...+.++...+.+.++.+..+++.+|..- +.. .+. .-| +..-.+.+ +.|+ . .+++
T Consensus 457 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v---~d~--~Gf----i~Nril~~~~~Ea-~-~l~~ 514 (725)
T 2wtb_A 457 ----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTP-VVV---GNC--TGF----AVNRMFFPYTQAA-M-FLVE 514 (725)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEE---ESS--TTT----THHHHHHHHHHHH-H-HHHH
T ss_pred ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEE-EEE---CCC--ccH----HHHHHHHHHHHHH-H-HHHH
Confidence 1223355577788999999999999999642 111 111 112 11112222 4444 3 3455
Q ss_pred cCCCHHHHHHHH
Q 007951 327 NGMNEDLAYKNT 338 (583)
Q Consensus 327 ~Gl~~e~A~~~~ 338 (583)
.|+++++.....
T Consensus 515 ~G~~~e~id~~~ 526 (725)
T 2wtb_A 515 CGADPYLIDRAI 526 (725)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 699998766654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=113.47 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=122.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------------------cC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~d~t~~d 171 (583)
|||+|||+|.||.++|..|.+. |++|++.++. +...+...+ .| +.. ..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 7999999999999999999998 9998766554 333333332 12 222 467
Q ss_pred HhhhhccCCeEEEeccch----------HHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhcccccCC--CCccE
Q 007951 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSMGLDFP--KNIGV 232 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~----------a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~----ie~~~i~~p--~dv~V 232 (583)
..+++++||+||+++|.. ...+++++|.+++++|++|++.+.+... . +++...... .++.
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~- 150 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFD- 150 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEE-
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCccee-
Confidence 888999999999999977 7788999999999999999888765321 1 111000011 2333
Q ss_pred EEeccCC--CchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC--cccccchhhhhhhhhhhhhhh
Q 007951 233 IAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGI 308 (583)
Q Consensus 233 I~v~Png--Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~--~vieTtf~eE~~sDlfgeqtv 308 (583)
+...|.. +|..+.+... .+.++ +.. .+.++.+.+..++..++.. .++.+.. ...+.-.+.+.+
T Consensus 151 v~~~Pe~a~eG~~~~~~~~---------p~~iv-vG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~- 217 (450)
T 3gg2_A 151 IASNPEFLKEGNAIDDFMK---------PDRVV-VGV-DSDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANA- 217 (450)
T ss_dssp EEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHH-
T ss_pred EEechhhhcccchhhhccC---------CCEEE-EEc-CCHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHH-
Confidence 4455643 2222211111 12222 222 1568899999999999862 2222222 222222333332
Q ss_pred HhhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 309 LLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 309 LsG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
+....-+++.-+...+.+.|+++++....
T Consensus 218 ~~a~~ia~~nE~~~l~~~~Gid~~~v~~~ 246 (450)
T 3gg2_A 218 MLATRISFMNDVANLCERVGADVSMVRLG 246 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 23333446677777788889998865543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-10 Score=108.79 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=99.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|+|||+|.||.+++.+|.+. |++|++.+|.. ...+...+.|+.. .+..++++++|+||+++|++..
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNP-KRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSH-HHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999988 88887766653 3334444446653 3778889999999999999876
Q ss_pred HHHHHHHHhcCCCCcEEE-EecCchhhhh----------hcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHL----------QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~i----------e~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
.++++ +.+.+ ++++|+ .+.|..+..+ .. .+| +.+|++.+ |...... +..+-. .|-.
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~---~~~~~~---~g~~ 163 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWT---LQAGPR---DGNR 163 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHH---HHTCSC---SSCC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhH---hccccc---CCce
Confidence 67775 66666 788765 5566654322 12 334 45788877 4433221 111110 1222
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++... .+.++.+.+..+++.+|..
T Consensus 164 ~~~~~g--~~~~~~~~v~~ll~~~G~~ 188 (215)
T 2vns_A 164 QVPICG--DQPEAKRAVSEMALAMGFM 188 (215)
T ss_dssp EEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred eEEEec--CCHHHHHHHHHHHHHcCCc
Confidence 223223 2678999999999999974
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-10 Score=115.57 Aligned_cols=144 Identities=21% Similarity=0.187 Sum_probs=98.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|.||.++|+.|+.. |.+|+++++. ...+.+.+.|+.. +.+.+|++++||+|++
T Consensus 155 ~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~--~~~~~~~~~g~~~----~~~l~ell~~aDiV~l 221 (352)
T 3gg9_A 155 GRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE--NSKERARADGFAV----AESKDALFEQSDVLSV 221 (352)
T ss_dssp BCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH--HHHHHHHHTTCEE----CSSHHHHHHHCSEEEE
T ss_pred CccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC--CCHHHHHhcCceE----eCCHHHHHhhCCEEEE
Confidence 467889 9999999999999999999987 9998766554 2345667788864 4589999999999999
Q ss_pred eccchHH-HHHHH-HHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhcccccc
Q 007951 185 LISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 185 avpd~a~-~~Vl~-eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~ 255 (583)
++|.... ..++. +..+.||+|++|+.++--. +..+++..+. ....||....|--+.+. ++.
T Consensus 222 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~-gA~lDV~~~EPl~~~~p---L~~------ 291 (352)
T 3gg9_A 222 HLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG-MAAIDVFETEPILQGHT---LLR------ 291 (352)
T ss_dssp CCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS-EEEECCCSSSCCCSCCG---GGG------
T ss_pred eccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc-EEEecccCCCCCCCCCh---hhc------
Confidence 9996543 34554 6788999999998775321 2223332221 23455555555322222 232
Q ss_pred CCCceEEEeecCC-CCHHH
Q 007951 256 GAGINSSFAVHQD-VDGRA 273 (583)
Q Consensus 256 G~Gv~aliAv~qd-~sgea 273 (583)
--|.+++||-- .+.++
T Consensus 292 --~~nvilTPHia~~t~e~ 308 (352)
T 3gg9_A 292 --MENCICTPHIGYVERES 308 (352)
T ss_dssp --CTTEEECCSCTTCBHHH
T ss_pred --CCCEEECCCCCCCCHHH
Confidence 24778899873 44444
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-10 Score=115.33 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=100.1
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
++.|+|..... ..+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+. + .+.. ..+.+
T Consensus 107 ~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~-----~~~~----~~~l~ 168 (290)
T 3gvx_A 107 MKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ-N-----VDVI----SESPA 168 (290)
T ss_dssp HHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT-T-----CSEE----CSSHH
T ss_pred hhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc-c-----cccc----cCChH
Confidence 45677765533 56889 9999999999999999999988 99987776653321 1 1332 45899
Q ss_pred hhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
|++++||+|++++|... ...++ .+..+.||+|++|+.++ |-. ...+++..+. ....||....|. +.
T Consensus 169 ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~-ga~lDV~~~EP~---~p- 243 (290)
T 3gvx_A 169 DLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDV-WYLSDVWWNEPE---IT- 243 (290)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC-EEEESCCTTTTS---CC-
T ss_pred HHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccce-EEeeccccCCcc---cc-
Confidence 99999999999999643 34455 46889999999998775 321 2223332221 235666666664 11
Q ss_pred HHhHhccccccCCCceEEEeecC--CCCHHHHHH
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~q--d~sgeale~ 276 (583)
+| .--|.+++||- ..+.++.+.
T Consensus 244 --L~--------~~~nvilTPHiag~~t~e~~~~ 267 (290)
T 3gvx_A 244 --ET--------NLRNAILSPHVAGGMSGEIMDI 267 (290)
T ss_dssp --SC--------CCSSEEECCSCSSCBTTBCCHH
T ss_pred --hh--------hhhhhhcCccccCCccchHHHH
Confidence 22 23578899994 345544443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-09 Score=106.51 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=101.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC---C--------CcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d---~--------t~~d~~Eav~~AD 180 (583)
+||+|||.|+||.++|..|.++ |++|.+..|.. .+...+.|+...+ + .+.+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999998 99988777753 2555556653211 0 1235566666899
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcE-EEEecCch-hhhhhcccccCCCCccEEEecc------CCCchhhHHhHhccc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGK 252 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~-i~~ie~~~i~~p~dv~VI~v~P------ngPg~~vR~lf~~G~ 252 (583)
+||++||+....+++++|.++++++++ |+...|+. ...+.+ .+|.+ .|+.... ..|+.+. .+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence 999999999999999999999999885 56788985 344444 34443 4443222 2334431 11
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 253 e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
|.|... +......+.+..+.+.+++..-|..
T Consensus 144 ---~~~~~~-ig~~~~~~~~~~~~l~~~l~~~~~~ 174 (320)
T 3i83_A 144 ---AYGRLM-LGNYPGGVSERVKTLAAAFEEAGID 174 (320)
T ss_dssp ---EEEEEE-EEESSSCCCHHHHHHHHHHHHTTSC
T ss_pred ---CCCEEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 123222 4332333345566677888888865
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=114.24 Aligned_cols=153 Identities=21% Similarity=0.263 Sum_probs=100.5
Q ss_pred eeecccccccc--chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 93 IVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 93 v~~~~r~~f~~--~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
-+|.|+|.... ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+. .|+.. ..
T Consensus 145 ~~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~----~~ 207 (333)
T 3ba1_A 145 YVRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY----YG 207 (333)
T ss_dssp HHHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE----ES
T ss_pred HHHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee----cC
Confidence 45667775321 2357889 9999999999999999999987 88887766653321 25543 46
Q ss_pred CHhhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEe-cCchh------hhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLS-HGFLL------GHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a-~G~~i------~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.++++++||+|++++|+.. ...++ +++.+.||+|++|+.+ .|..+ ..+++..+. ...++|+..+|. |.
T Consensus 208 ~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~-ga~lDv~~~EP~-~~ 285 (333)
T 3ba1_A 208 SVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG-GAGLDVFEREPE-VP 285 (333)
T ss_dssp CHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSC-EEEESCCTTTTC-CC
T ss_pred CHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCe-EEEEecCCCCCC-Cc
Confidence 78899999999999999864 45666 4577789999988755 44321 122221111 124567766773 32
Q ss_pred hhhHHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
+ .+|. ..+.+++||.. .+.++.+
T Consensus 286 ~---~L~~--------~~nviltPH~~~~t~e~~~ 309 (333)
T 3ba1_A 286 E---KLFG--------LENVVLLPHVGSGTVETRK 309 (333)
T ss_dssp G---GGGG--------CTTEEECSSCTTCSHHHHH
T ss_pred c---hhhc--------CCCEEECCcCCCCCHHHHH
Confidence 2 2343 36788899873 4444443
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=8e-09 Score=111.98 Aligned_cols=206 Identities=12% Similarity=0.056 Sum_probs=118.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------------------CceecCCCcCCH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-------------------G~~~~d~t~~d~ 172 (583)
+||+|||+|.||.++|.+|.+. |.|++|++.++. +...+...+. ++.. ..+.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~~ 80 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMN-TAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSDI 80 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECCH
Confidence 7999999999999999999876 234777665543 3333333221 1221 3466
Q ss_pred hhhhccCCeEEEeccch---------------HHHHHHHHHHhcCCCCcEEEEecCchhh---hhhccccc-CC--CCcc
Q 007951 173 YETISGSDLVLLLISDA---------------AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLD-FP--KNIG 231 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~---------------a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~-~p--~dv~ 231 (583)
.+++++||+||+++|.. ...++++.|.+++++|++|++.+.+... .+....-. .+ .+++
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d 160 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLK 160 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CC
T ss_pred HHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCc
Confidence 78899999999998753 2567888899999999998886554321 11110000 11 1233
Q ss_pred -EEEeccC--CCchhhHHhHhccccccCCCceEEEeecC-CCCHHHHHHHHHHHHHhCC-Ccccccchhhhhhhhhhhhh
Q 007951 232 -VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGER 306 (583)
Q Consensus 232 -VI~v~Pn--gPg~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale~a~ala~aIG~-~~vieTtf~eE~~sDlfgeq 306 (583)
.|..+|. .||..+.+++... ..++.... ..+.++.+.+..++..+|. ..++.+.. ...+.-.+-+.
T Consensus 161 ~~v~~~Pe~~~~G~a~~~~~~~~--------~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~-~~ae~~Kl~~N 231 (481)
T 2o3j_A 161 FQVLSNPEFLAEGTAMKDLANPD--------RVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT-WSSELSKLVAN 231 (481)
T ss_dssp EEEEECCCCCCTTCHHHHHHSCS--------CEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH-HHHHHHHHHHH
T ss_pred eEEEeCcccccccchhhcccCCC--------EEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH-HHHHHHHHHHH
Confidence 3567884 3444433333211 22232221 1113577888999999985 32222222 22222222232
Q ss_pred hhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 307 GILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 307 tvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+ .....-+++.-+...+.+.|+++++...
T Consensus 232 ~-~~a~~ia~~nE~~~la~~~Gid~~~v~~ 260 (481)
T 2o3j_A 232 A-FLAQRISSINSISAVCEATGAEISEVAH 260 (481)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 2 1222334677777778888998886554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-09 Score=108.33 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=99.4
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+|.|+|........+.| ++|||||+|.||.++|+.|+.. |.+|++.++... + .+... ..+.+
T Consensus 108 ~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~----~~~l~ 169 (303)
T 1qp8_A 108 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF----TNSLE 169 (303)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc----CCCHH
Confidence 45567743212236889 9999999999999999999987 998876665432 1 13332 45788
Q ss_pred hhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEEEecCchh-------hhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~~a~G~~i-------~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
+++++||+|++++|... ...++. ++.+.||+|++|+.++--.+ ..+++..+. ....+|. ....|...-
T Consensus 170 ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~-gA~lDv~--~~~ep~~~~ 246 (303)
T 1qp8_A 170 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF-IFASDVW--WGRNDFAKD 246 (303)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC-EEEESCC--TTTTCCGGG
T ss_pred HHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCce-EEEeccC--CCCCCCCCC
Confidence 99999999999999874 455664 68889999999987754321 122221111 1122332 033444433
Q ss_pred HHhHhccccccCCCceEEEeecCCC---CHHHHH
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQDV---DGRATN 275 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd~---sgeale 275 (583)
..+|.. -+.+++||... +.+..+
T Consensus 247 ~~L~~~--------~nviltPH~~~~~~t~e~~~ 272 (303)
T 1qp8_A 247 AEFFSL--------PNVVATPWVAGGYGNERVWR 272 (303)
T ss_dssp HHHHTS--------TTEEECCSCSSSSSCHHHHH
T ss_pred ChhhcC--------CCEEECCCcCCCCCCHHHHH
Confidence 446653 68889999753 566543
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=113.02 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=99.2
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|.||.++|+.++.. |.+|+++++.. ..+.+.+.|+. ..+.+|++++||+|++
T Consensus 171 ~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~-----~~~l~ell~~aDvV~l 236 (365)
T 4hy3_A 171 ARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE-----PASLEDVLTKSDFIFV 236 (365)
T ss_dssp CCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE-----ECCHHHHHHSCSEEEE
T ss_pred ccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee-----eCCHHHHHhcCCEEEE
Confidence 467889 9999999999999999999876 88987766542 34566677876 3589999999999999
Q ss_pred eccchHH-HHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhcccccc
Q 007951 185 LISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (583)
Q Consensus 185 avpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~ 255 (583)
++|.... ..++ .+....||+|++|+.++ |-. +..+++..+. ..+||....|--+.+. ++.
T Consensus 237 ~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLDV~~~EPl~~~~p---L~~------ 305 (365)
T 4hy3_A 237 VAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASDVYPEEPLPLDHP---VRS------ 305 (365)
T ss_dssp CSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEESCCSSSSCCTTCG---GGT------
T ss_pred cCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEeeCCCCCCCCCCCh---hhc------
Confidence 9996543 4455 46888999999988664 321 2234443333 3456655555322222 222
Q ss_pred CCCceEEEeecC-CCCHHHHHH
Q 007951 256 GAGINSSFAVHQ-DVDGRATNV 276 (583)
Q Consensus 256 G~Gv~aliAv~q-d~sgeale~ 276 (583)
--|.+++||- ..+.++.+.
T Consensus 306 --~~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 306 --LKGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp --CTTEEECCSCSSCCHHHHHH
T ss_pred --CCCEEECCccccCHHHHHHH
Confidence 2478889987 455555443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-09 Score=105.18 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=75.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~---------t~~d~~Eav~~ADIV 182 (583)
+||+|||.|+||.++|..|.++ |++|.+. ++ ++..+...+.|+..... ...+. +.++++|+|
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 90 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV 90 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence 8999999999999999999998 9988776 44 44455666667543100 02334 446899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
|++||+....+++++|.++++++++ |+...|+..
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 9999999999999999999999986 458899875
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=112.78 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=94.0
Q ss_pred eeeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc
Q 007951 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (583)
Q Consensus 93 v~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~ 169 (583)
-+|.|+|... .....+.| |+|||||+|+||.++|+.|+.. |.+|+++++...+ ..++.. .
T Consensus 151 ~~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~----~ 213 (340)
T 4dgs_A 151 LVREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA----H 213 (340)
T ss_dssp HHHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE----C
T ss_pred HHhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee----c
Confidence 4566777542 12367899 9999999999999999999987 9998777665332 234443 5
Q ss_pred CCHhhhhccCCeEEEeccchHH-HHHH-HHHHhcCCCCcEEEEecCchh-------hhhhcccccCCCCccEEEeccCCC
Q 007951 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~G~~i-------~~ie~~~i~~p~dv~VI~v~PngP 240 (583)
.+.+|++++||+|++++|.... ..++ +++.+.||+|++|+.++--.+ ..+++..+. ....||..-.|..+
T Consensus 214 ~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~-gA~LDVf~~EP~~~ 292 (340)
T 4dgs_A 214 QSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIA-GAGLDVFVNEPAIR 292 (340)
T ss_dssp SSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSS-EEEESCCSSSSSCC
T ss_pred CCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCce-EEEeCCcCCCCCCc
Confidence 6899999999999999995544 4566 468889999999886642221 112221111 22456666667432
Q ss_pred chhhHHhHhccccccCCCceEEEeecC-CCCHHHHHH
Q 007951 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (583)
Q Consensus 241 g~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale~ 276 (583)
. .++.- -|.+++||- ..|.++.+.
T Consensus 293 ~----~L~~~--------~nvilTPHia~~t~e~~~~ 317 (340)
T 4dgs_A 293 S----EFHTT--------PNTVLMPHQGSATVETRMA 317 (340)
T ss_dssp S----HHHHS--------SSEEECSSCSSCCHHHHHH
T ss_pred c----chhhC--------CCEEEcCcCCcCCHHHHHH
Confidence 2 24432 577889987 445554443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.3e-10 Score=113.66 Aligned_cols=150 Identities=21% Similarity=0.194 Sum_probs=99.3
Q ss_pred eeccccc-cc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc
Q 007951 94 VRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (583)
Q Consensus 94 ~~~~r~~-f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~ 169 (583)
+|.|+|. +. .....+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+. . +. .
T Consensus 124 ~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~-~------~~-----~ 184 (311)
T 2cuk_A 124 ARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPL-P------YP-----F 184 (311)
T ss_dssp HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS-S------SC-----B
T ss_pred HHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCccc-c------cc-----c
Confidence 4566774 11 12356889 9999999999999999999987 88887766654332 1 22 4
Q ss_pred CCHhhhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEEEecCchhh-------hhhcccccCCCCccEEEeccCCC
Q 007951 170 GDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~-------~ie~~~i~~p~dv~VI~v~PngP 240 (583)
.+.++++++||+|++++|+.. ...++. +..+.||+|++|+.++--.+. .++ ..+ ....++|+..+|..+
T Consensus 185 ~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i-~ga~lDv~~~eP~~~ 262 (311)
T 2cuk_A 185 LSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHL-FGAGLDVTDPEPLPP 262 (311)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS-SEEEESSCSSSSCCT
T ss_pred CCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC-CEEEEeeCCCCCCCC
Confidence 578899999999999999874 455664 577889999998866543311 111 111 112456776677322
Q ss_pred chhhHHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 241 GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 241 g~~vR~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
.+ .+|. .-+.+++||.. .+.++.+
T Consensus 263 ~~---~L~~--------~~nviltPh~~~~t~~~~~ 287 (311)
T 2cuk_A 263 GH---PLYA--------LPNAVITPHIGSAGRTTRE 287 (311)
T ss_dssp TS---GGGG--------CTTEEECCSCTTCBHHHHH
T ss_pred CC---hhhh--------CCCEEECCcCCCCCHHHHH
Confidence 22 2443 36889999874 4444433
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=109.61 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=121.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-------------------cC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~d~t~~d 171 (583)
-+|+|||+|.||.++|.+|.+. |++|++++++.++ .+...+ .| +.. +.+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----ttd 77 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLSF----TTD 77 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEEE----ECC
Confidence 5899999999999999999999 9998776665443 333222 12 222 467
Q ss_pred HhhhhccCCeEEEeccch-----------HHHHHHHHHHhcCCCCcEEEEecCchhh-------hhhcccccCCCCccEE
Q 007951 172 IYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVI 233 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-------~ie~~~i~~p~dv~VI 233 (583)
..+++++||+||+|+|.. ...++++.|.+++++|++|++.+++... .+.+. .+..++. +
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~~-v 154 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGAK-V 154 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCCE-E
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCce-E
Confidence 889999999999997643 4678889999999999999888776422 11110 1112443 4
Q ss_pred EeccCCC--chhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCc--ccccchhhhhhhhhhhhhhhH
Q 007951 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGIL 309 (583)
Q Consensus 234 ~v~PngP--g~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~--vieTtf~eE~~sDlfgeqtvL 309 (583)
...|... |..+++... .+. +.+.. .+.++.+.+..++..++... ++..+-....+.-.+.+.+ +
T Consensus 155 ~~~Pe~a~eG~a~~d~~~---------p~~-ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~-~ 222 (446)
T 4a7p_A 155 VSNPEFLREGAAIEDFKR---------PDR-VVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANA-F 222 (446)
T ss_dssp EECCCCCCTTSHHHHHHS---------CSC-EEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHH-H
T ss_pred EeCcccccccchhhhccC---------CCE-EEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHH-H
Confidence 4566432 221111110 123 22232 14678889999998887531 1222212222333333443 2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 007951 310 LGAVHGIVESLFRRFTENGMNEDLAYKN 337 (583)
Q Consensus 310 sG~~pAlieAl~d~~Ve~Gl~~e~A~~~ 337 (583)
...--+++.-+...+.+.|+++++....
T Consensus 223 ~a~~ia~~nE~~~l~~~~GiD~~~v~~~ 250 (446)
T 4a7p_A 223 LAVKITFINEIADLCEQVGADVQEVSRG 250 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3334446777778888999998865543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-08 Score=106.03 Aligned_cols=196 Identities=11% Similarity=0.081 Sum_probs=113.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc------------------CceecCCCcCCHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------------GFTEENGTLGDIY 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~------------------G~~~~d~t~~d~~ 173 (583)
|||+|||+|.||.++|..|. . |++|++.++. +...+...+. ++.. +.+..
T Consensus 37 mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~----ttd~~ 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIV-QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA----TTDKH 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE----ESCHH
T ss_pred CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecC-HHHhhHHhccCCccccccHHHHHhhccCCeEE----EcCHH
Confidence 89999999999999999876 3 7887665544 4333333321 2332 46788
Q ss_pred hhhccCCeEEEeccch-----------HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccC--CC
Q 007951 174 ETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK--GM 240 (583)
Q Consensus 174 Eav~~ADIVILavpd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~Pn--gP 240 (583)
+++++||+||+++|.. ...++++.|.+ +++|++|++.+.+.....+.....+... . +...|- .|
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~-~-v~~sPe~~~~ 181 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID-N-VIFSPEFLRE 181 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC-C-EEECCCCCCT
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc-c-EeecCccCCc
Confidence 9999999999999975 45678888999 9999999888766533221111122222 3 345773 23
Q ss_pred chhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHH--hCCC-cccccchhhhhhhhhhhhhhhHhhHHHHHH
Q 007951 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (583)
Q Consensus 241 g~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~a--IG~~-~vieTtf~eE~~sDlfgeqtvLsG~~pAli 317 (583)
|..+.+... .+. |.+.. +.+..+.+..++.. ++.. .++.+... +-+.-.+-+.+ +...--+++
T Consensus 182 G~A~~~~l~---------p~r-IvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~-~AE~~Kl~~N~-~~a~~Ia~~ 247 (432)
T 3pid_A 182 GRALYDNLH---------PSR-IVIGE--RSARAERFADLLKEGAIKQDIPTLFTDST-EAEAIKLFANT-YLALRVAYF 247 (432)
T ss_dssp TSHHHHHHS---------CSC-EEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHH-HHHHHHHHHHH-HHHHHHHHH
T ss_pred chhhhcccC---------Cce-EEecC--CHHHHHHHHHHHHhhhccCCCeEEecCcc-HHHHHHHHHHH-HHHHHHHHH
Confidence 333322211 112 22333 23455667777765 4432 23333322 22222222333 223333466
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 007951 318 ESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 318 eAl~d~~Ve~Gl~~e~A~~ 336 (583)
.-+...+.+.|+++++...
T Consensus 248 nEl~~lae~~GiD~~~v~~ 266 (432)
T 3pid_A 248 NELDSYAESQGLNSKQIIE 266 (432)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6666777788888765443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=115.65 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=104.9
Q ss_pred eeecccccccc---chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc
Q 007951 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (583)
Q Consensus 93 v~~~~r~~f~~---~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~ 169 (583)
-+|.|+|.... ....+.| ++|||||+|.||.++|+.|+.. |.+|++.++.. ...+.+.+.|+.. .
T Consensus 171 ~~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-~~~~~~~~~G~~~----~ 238 (393)
T 2nac_A 171 WARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW----H 238 (393)
T ss_dssp HHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----C
T ss_pred HHHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCc-cchhhHhhcCcee----c
Confidence 45667885321 1246889 9999999999999999999987 88887666543 3345666778764 4
Q ss_pred CCHhhhhccCCeEEEeccch-HHHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCC
Q 007951 170 GDIYETISGSDLVLLLISDA-AQADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~-a~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngP 240 (583)
.+.++++++||+|++++|.. ....++ ++..+.||+|++|+.++--. ...+++..+. ...+||+...|..+
T Consensus 239 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-gA~lDV~~~EP~~~ 317 (393)
T 2nac_A 239 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA-GYAGDVWFPQPAPK 317 (393)
T ss_dssp SSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE-EEEESCCSSSSCCT
T ss_pred CCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee-EEEEEecCCCCCCC
Confidence 57899999999999999964 334566 46788999999988553322 1122221111 23466777777433
Q ss_pred chhhHHhHhccccccCCCceEEEeecC-CCCHHHHH
Q 007951 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (583)
Q Consensus 241 g~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale 275 (583)
.+. +|. .-|.+++||. ..+.++.+
T Consensus 318 ~~p---L~~--------~~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 318 DHP---WRT--------MPYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp TCG---GGT--------STTBCCCCSCTTCSHHHHH
T ss_pred CCh---hHc--------CCCEEECCCCCcCcHHHHH
Confidence 333 332 2467789987 34444443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=108.33 Aligned_cols=204 Identities=13% Similarity=0.080 Sum_probs=118.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH---------------HH----cCceecCCCcCC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD 171 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A---------------~~----~G~~~~d~t~~d 171 (583)
++||+|||+|.||.++|.+|.+. |.|++|++.++. ++..+.. .+ .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~-~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVN-ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999876 335787666554 3223221 11 23432 457
Q ss_pred HhhhhccCCeEEEeccchH---------------HHHHHHHHHhcCCCCcEEEEecCchhh-------hhhcccccCCCC
Q 007951 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKN 229 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a---------------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-------~ie~~~i~~p~d 229 (583)
..+++++||+||+++|... ..+++++|.+++++|++|++.+.+... .++. .....
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~---~~~~~ 152 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA---NTKPN 152 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH---TCCTT
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH---hCCCC
Confidence 7889999999999997543 356778899999999988876544321 1111 10112
Q ss_pred cc-EEEeccCC--CchhhHHhHhccccccCCCceEEEee-cCCCCHHHHHHHHHHHHHh-CCCcccccchhhhhhhhhhh
Q 007951 230 IG-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFG 304 (583)
Q Consensus 230 v~-VI~v~Png--Pg~~vR~lf~~G~e~~G~Gv~aliAv-~qd~sgeale~a~ala~aI-G~~~vieTtf~eE~~sDlfg 304 (583)
++ .|...|.. ||..+.+.+... ..++.. ....+.+..+.+..++..+ |...++.+... .-+.-.+.
T Consensus 153 ~d~~V~~~Pe~~~~G~~~~d~~~~~--------rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~-~ae~~Kl~ 223 (467)
T 2q3e_A 153 LNLQVLSNPEFLAEGTAIKDLKNPD--------RVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTW-SSELSKLA 223 (467)
T ss_dssp CEEEEEECCCCCCTTSHHHHHHSCS--------CEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHH-HHHHHHHH
T ss_pred CCeEEEeCHHHhhcccchhhccCCC--------EEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHH-HHHHHHHH
Confidence 33 34455632 444433333221 122331 1113567889999999998 64322222221 11112222
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 305 eqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+.+ +....-+++.-+...+.+.|+++++...
T Consensus 224 ~N~-~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 254 (467)
T 2q3e_A 224 ANA-FLAQRISSINSISALCEATGADVEEVAT 254 (467)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 222 2222334666677778888999886544
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=105.17 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=74.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~---------t~~d~~Eav~~ADIV 182 (583)
+||+|||+|+||.++|..|.++ |++|.+..|. +..+...+.|+..... ...+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999998 8888877763 3456666777753110 0235554 6899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGF 214 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~ 214 (583)
|++||+....+++++|.++++++++| +...|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 99999999999999999999999865 567885
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=110.60 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
...+.| ++|||||+|.||.++|+.|+ .. |.+|++.++.. ...+.+.+.|+.. +.+.++++++||+|+
T Consensus 158 ~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~~~~~~g~~~----~~~l~ell~~aDvVi 225 (348)
T 2w2k_A 158 AHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAETEKALGAER----VDSLEELARRSDCVS 225 (348)
T ss_dssp CCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHHHHHHHTCEE----CSSHHHHHHHCSEEE
T ss_pred CcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchhhHhhcCcEE----eCCHHHHhccCCEEE
Confidence 356889 99999999999999999998 77 88887665543 3445556667764 347889999999999
Q ss_pred EeccchH-HHHHH-HHHHhcCCCCcEEEEecCc
Q 007951 184 LLISDAA-QADNY-EKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 184 Lavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++|+.. ...++ .++.+.||+|++|+.++..
T Consensus 226 l~vp~~~~t~~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 226 VSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp ECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred EeCCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 9999865 44555 3677889999988866443
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=113.22 Aligned_cols=156 Identities=20% Similarity=0.207 Sum_probs=101.4
Q ss_pred eecccccc----ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc
Q 007951 94 VRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (583)
Q Consensus 94 ~~~~r~~f----~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~ 169 (583)
+|.|+|.- ......+.| ++|||||+|.||.++|+.|+.. |.+|+++++... ..+.+ .|+.. +
T Consensus 153 ~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~-~~~~~--~g~~~----~ 218 (345)
T 4g2n_A 153 VRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRL-SHALE--EGAIY----H 218 (345)
T ss_dssp HHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCC-CHHHH--TTCEE----C
T ss_pred HHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCc-chhhh--cCCeE----e
Confidence 45677752 123467899 9999999999999999999977 999877666532 22322 26653 4
Q ss_pred CCHhhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCC
Q 007951 170 GDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngP 240 (583)
.+.+|++++||+|++++|... ...++ ++..+.||+|++|+.++ |-. +..+++..+. ...+||.-..| .+
T Consensus 219 ~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-gA~LDVf~~EP-~~ 296 (345)
T 4g2n_A 219 DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLF-AAGLDVFANEP-AI 296 (345)
T ss_dssp SSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTTT-SC
T ss_pred CCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCce-EEEecCCCCCC-CC
Confidence 589999999999999999543 34455 46788899999998664 321 2233332222 23456665566 22
Q ss_pred chhhHHhHhccccccCCCceEEEeecC-CCCHHHHHH
Q 007951 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (583)
Q Consensus 241 g~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale~ 276 (583)
.+. ++.- -|.+++||- ..+.++.+.
T Consensus 297 ~~p---L~~~--------~nvilTPHia~~t~e~~~~ 322 (345)
T 4g2n_A 297 DPR---YRSL--------DNIFLTPHIGSATHETRDA 322 (345)
T ss_dssp CTT---GGGC--------TTEEECCSCTTCBHHHHHH
T ss_pred Cch---HHhC--------CCEEEcCccCcCCHHHHHH
Confidence 222 2221 468899987 344554433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-09 Score=112.18 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=74.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+ +.+.+.|+. ..+..+++++||+|+++
T Consensus 146 ~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~l~~~l~~aDvVil~ 211 (334)
T 2dbq_A 146 YDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERELNAE-----FKPLEDLLRESDFVVLA 211 (334)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHHCCE-----ECCHHHHHHHCSEEEEC
T ss_pred cCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhhcCcc-----cCCHHHHHhhCCEEEEC
Confidence 56888 9999999999999999999987 9998776665433 555566775 35788999999999999
Q ss_pred ccchHH-HHHH-HHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
+|+... ..++ +++.+.|++|++|+.++
T Consensus 212 vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 212 VPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp CCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred CCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 998763 4566 46788899999887553
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-09 Score=112.83 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=104.4
Q ss_pred eecccccccc---chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~f~~---~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
++.|+|.... ....+.| ++|||||+|.||.++|+.|+.. |.+|+++++. ....+.+.+.|+.. +.
T Consensus 145 ~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~ 212 (351)
T 3jtm_A 145 VVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRL-QMAPELEKETGAKF----VE 212 (351)
T ss_dssp HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSS-CCCHHHHHHHCCEE----CS
T ss_pred HHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCC-ccCHHHHHhCCCeE----cC
Confidence 4567776432 2346889 9999999999999999999987 9997766654 33456667778864 56
Q ss_pred CHhhhhccCCeEEEeccch-HHHHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCc
Q 007951 171 DIYETISGSDLVLLLISDA-AQADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~-a~~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
+.+|++++||+|++++|.. ....++ .+..+.||+|++|+.++ |-. +..+++..+. ....||....|.-+.
T Consensus 213 ~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-ga~lDV~~~EP~~~~ 291 (351)
T 3jtm_A 213 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG-GYSGDVWDPQPAPKD 291 (351)
T ss_dssp CHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCCTT
T ss_pred CHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc-EEEeCCCCCCCCCCC
Confidence 8999999999999999954 334455 46788899999988664 321 2223332221 234556555563333
Q ss_pred hhhHHhHhccccccCCCceEEEeecC-CCCHHHHHH
Q 007951 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (583)
Q Consensus 242 ~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeale~ 276 (583)
+. ++.- -|.+++||- ..|.++.+.
T Consensus 292 ~p---L~~~--------~nvilTPHia~~t~ea~~~ 316 (351)
T 3jtm_A 292 HP---WRYM--------PNQAMTPHTSGTTIDAQLR 316 (351)
T ss_dssp CG---GGTS--------TTBCCCCSCGGGSHHHHHH
T ss_pred Ch---hhcC--------CCEEECCcCCCCCHHHHHH
Confidence 22 2221 356788884 445555443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-09 Score=112.11 Aligned_cols=144 Identities=18% Similarity=0.118 Sum_probs=97.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+ ..+.+.|+.. +.+.+|++++||+|+++
T Consensus 164 ~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~----~~~l~ell~~aDvV~l~ 230 (347)
T 1mx3_A 164 ARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQR----VSTLQDLLFHSDCVTLH 230 (347)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCEE----CSSHHHHHHHCSEEEEC
T ss_pred cCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHhhcCCee----cCCHHHHHhcCCEEEEc
Confidence 36889 9999999999999999999987 9998777665433 2345567753 45789999999999999
Q ss_pred ccchH-HHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCC-chhhHHhHhcccccc
Q 007951 186 ISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGM-GPSVRRLYVQGKEIN 255 (583)
Q Consensus 186 vpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngP-g~~vR~lf~~G~e~~ 255 (583)
+|+.. ...++ ++..+.||+|++|+.++--. ...+++..+. ....+|....|-.+ .+. ++
T Consensus 231 ~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~-gA~lDV~~~EP~~~~~~~---L~------- 299 (347)
T 1mx3_A 231 CGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR-GAALDVHESEPFSFSQGP---LK------- 299 (347)
T ss_dssp CCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE-EEEESCCSSSSCCTTSST---TT-------
T ss_pred CCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc-EEEEeecccCCCCCCCch---HH-------
Confidence 99754 45566 46778999999988664322 2222332222 23467777777321 121 11
Q ss_pred CCCceEEEeecCC-CCHHHH
Q 007951 256 GAGINSSFAVHQD-VDGRAT 274 (583)
Q Consensus 256 G~Gv~aliAv~qd-~sgeal 274 (583)
.--|.+++||-. .+.+..
T Consensus 300 -~~~nvi~tPHia~~t~~~~ 318 (347)
T 1mx3_A 300 -DAPNLICTPHAAWYSEQAS 318 (347)
T ss_dssp -TCSSEEECSSCTTCCHHHH
T ss_pred -hCCCEEEEchHHHHHHHHH
Confidence 135788899874 344443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-09 Score=111.57 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=80.2
Q ss_pred eeccccc-c--ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC
Q 007951 94 VRGGRDL-F--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (583)
Q Consensus 94 ~~~~r~~-f--~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~ 170 (583)
+|.|+|. + ......+.| ++|||||+|+||.++|+.|+.. |.+|+++++.. ...+.+.+.|+. ..
T Consensus 126 ~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~-----~~ 192 (330)
T 4e5n_A 126 VRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGLR-----QV 192 (330)
T ss_dssp HHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTEE-----EC
T ss_pred HHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCce-----eC
Confidence 4555554 2 122456889 9999999999999999999877 99887666543 345566667876 35
Q ss_pred CHhhhhccCCeEEEeccchH-HHHHHH-HHHhcCCCCcEEEEec
Q 007951 171 DIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a-~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
+.++++++||+|++++|... ...++. +..+.||+|++|+.++
T Consensus 193 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 236 (330)
T 4e5n_A 193 ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236 (330)
T ss_dssp CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 89999999999999999643 344554 6889999999988764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-08 Score=105.31 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=118.9
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------------------ceecCCCc
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------------FTEENGTL 169 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--------------------~~~~d~t~ 169 (583)
|-+||+|||+|.||.++|..|.+. |++|++.++. ++..+...+.+ +.. .
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~----t 75 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF----S 75 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----E
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE----E
Confidence 448999999999999999999998 9987665543 43344443321 111 3
Q ss_pred CCHhhhhccCCeEEEeccc----------hHHHHHHHHHHhcCCCCcEEEEecCchhh-------hhhcccccCC---CC
Q 007951 170 GDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFP---KN 229 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd----------~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-------~ie~~~i~~p---~d 229 (583)
.+..+++++||+||+|||. ....+++++|.+++++|++|+..+++... .+.+. +..+ .+
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~-~~~g~~~~~ 154 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEE-LAKRGGDQM 154 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHH-HHHTTCCCC
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHH-hcCCCCCcc
Confidence 5677889999999999997 78888999999999999998887776321 11110 0001 22
Q ss_pred ccEEEeccCC--CchhhHHhHhccccccCCCceEEEeecCCCCH----HHHHHHHHHHHHhCC--Ccccccchhhhhhhh
Q 007951 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDG----RATNVALGWSVALGS--PFTFATTLEQEYRSD 301 (583)
Q Consensus 230 v~VI~v~Png--Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg----eale~a~ala~aIG~--~~vieTtf~eE~~sD 301 (583)
.. +...|.. ||..+.+... .+. +.+..+ ++ +..+.+..++..++. ..++.+.. ...+.-
T Consensus 155 ~~-v~~~Pe~~~eG~~~~~~~~---------p~~-iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di-~~ae~~ 221 (478)
T 2y0c_A 155 FS-VVSNPEFLKEGAAVDDFTR---------PDR-IVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDV-RSAEFT 221 (478)
T ss_dssp EE-EEECCCCCCTTCHHHHHHS---------CSC-EEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECH-HHHHHH
T ss_pred EE-EEEChhhhcccceeeccCC---------CCE-EEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCH-HHHHHH
Confidence 22 4455532 2322211111 122 222322 23 678888888888763 11222221 222222
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHH
Q 007951 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (583)
Q Consensus 302 lfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~ 335 (583)
.+.+.+ +....-+++.-+...+.+.|+++++..
T Consensus 222 Kl~~N~-~~a~~ia~~nE~~~la~~~Gid~~~v~ 254 (478)
T 2y0c_A 222 KYAANA-MLATRISFMNELANLADRFGADIEAVR 254 (478)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 222222 222223467777888889999986544
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-09 Score=112.15 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=97.0
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
.+.|+|........+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+. +.+ ..... ..+.+
T Consensus 121 ~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~~l~ 186 (324)
T 3evt_A 121 RGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FTATA 186 (324)
T ss_dssp TTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GGGCH
T ss_pred HhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cCCHH
Confidence 45667765434567899 9999999999999999999987 99987776653321 111 11111 35778
Q ss_pred hhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
+++++||+|++++|... ...++ .+....||+|++|+.++ |-. +..+++..+. ....||....|.-+.+.
T Consensus 187 ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~-gA~lDV~~~EPl~~~~p- 264 (324)
T 3evt_A 187 DALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS-MAALDVTEPEPLPTDHP- 264 (324)
T ss_dssp HHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCS-EEEESSCSSSSCCTTCG-
T ss_pred HHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCce-EEEeCCCCCCCCCCCCh-
Confidence 99999999999999644 34455 46788899999998764 321 2233332221 23456666666333322
Q ss_pred HHhHhccccccCCCceEEEeecC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~q 267 (583)
++.. -+.+++||-
T Consensus 265 --L~~~--------~nvilTPHi 277 (324)
T 3evt_A 265 --LWQR--------DDVLITPHI 277 (324)
T ss_dssp --GGGC--------SSEEECCSC
T ss_pred --hhcC--------CCEEEcCcc
Confidence 3332 477889986
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=103.44 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=74.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecC----------CCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d----------~t~~d~~Eav~~AD 180 (583)
+||+|||+|.||..+|..|.+. |++|.+.++..+ ..+...+. |+...+ ....+..++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQ-RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7999999999999999999988 888876655433 34444443 431100 01357778889999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+||+++|+..+.++++++.++++++++|++..|+
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999999999999999999987777773
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-09 Score=110.43 Aligned_cols=163 Identities=15% Similarity=0.045 Sum_probs=104.9
Q ss_pred eeeccccccc---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCC
Q 007951 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGT 168 (583)
Q Consensus 93 v~~~~r~~f~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t 168 (583)
-++.|+|.+. .....+.| ++|||||+|+||.++|+.|+.. |.+ |++.++.. ...+.+.+.|+..
T Consensus 144 ~~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~-~~~~~~~~~g~~~---- 211 (364)
T 2j6i_A 144 QIINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQA-LPKDAEEKVGARR---- 211 (364)
T ss_dssp HHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSC-CCHHHHHHTTEEE----
T ss_pred HHHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCc-cchhHHHhcCcEe----
Confidence 3456777542 12356899 9999999999999999999987 886 87666543 3355667778764
Q ss_pred cCCHhhhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cCch------hhhhhcccccCCCCccEEEeccCC
Q 007951 169 LGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (583)
Q Consensus 169 ~~d~~Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G~~------i~~ie~~~i~~p~dv~VI~v~Png 239 (583)
+.+.++++++||+|++++|.... ..++. +..+.||+|++|+.+ .|-. +..+++..+. ...+||.-..|.-
T Consensus 212 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~-gA~LDVf~~EP~~ 290 (364)
T 2j6i_A 212 VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR-GYGGDVWFPQPAP 290 (364)
T ss_dssp CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCC
T ss_pred cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc-EEEEecCCCCCCC
Confidence 45789999999999999998643 44553 577899999988755 3321 2233332222 2345666666643
Q ss_pred CchhhHHhHhccccccCCCceEEEeecC-CCCHHHH
Q 007951 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRAT 274 (583)
Q Consensus 240 Pg~~vR~lf~~G~e~~G~Gv~aliAv~q-d~sgeal 274 (583)
+.+.. +.-... .+-|.+++||- ..|.++.
T Consensus 291 ~~~pL---~~~~~~---~~~nvilTPHia~~t~e~~ 320 (364)
T 2j6i_A 291 KDHPW---RDMRNK---YGAGNAMTPHYSGTTLDAQ 320 (364)
T ss_dssp TTCHH---HHCCCT---TSCCEEECCSCGGGSHHHH
T ss_pred CCChH---HhccCC---ccCcEEECCccCcCCHHHH
Confidence 33332 221000 01278899987 3444544
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-09 Score=110.28 Aligned_cols=157 Identities=19% Similarity=0.129 Sum_probs=94.3
Q ss_pred eecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
++.|+|.... ....+.| |+|||||+|+||..+|+.++.. |.+|+++++..... ..++.. ..+.
T Consensus 128 ~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~-----~~~~~~----~~~l 191 (404)
T 1sc6_A 128 AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ----VQHL 191 (404)
T ss_dssp HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE----CSCH
T ss_pred HHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc-----cCCcee----cCCH
Confidence 4556775332 2356899 9999999999999999999987 99987776643221 112332 4589
Q ss_pred hhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEecCch-------hhhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~G~~-------i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+|++++||+|++++|... ...++ ++....||+|++|+.++--. ...+++..+. ...+||...+|..+...
T Consensus 192 ~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~-gA~lDVf~~EP~~~~~~ 270 (404)
T 1sc6_A 192 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA-GAAIDVFPTEPATNSDP 270 (404)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE-EEEEEC---------CT
T ss_pred HHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc-EEEEeecCCCCCCcccc
Confidence 999999999999999764 34455 45778899999988664322 1222221111 12467787788432211
Q ss_pred h-HHhHhccccccCCCceEEEeecCC-CCHHHHH
Q 007951 244 V-RRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (583)
Q Consensus 244 v-R~lf~~G~e~~G~Gv~aliAv~qd-~sgeale 275 (583)
. ..++. --+.+++||-. .|.++.+
T Consensus 271 ~~~pL~~--------~~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 271 FTSPLAE--------FDNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp TTGGGTT--------CTTEEEECCCSCCSHHHHH
T ss_pred ccchhhc--------CCCEEECCCCCCCcHHHHH
Confidence 0 11222 25788999874 4455443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-09 Score=107.97 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=79.7
Q ss_pred eecccccc-c---cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc
Q 007951 94 VRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (583)
Q Consensus 94 ~~~~r~~f-~---~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~ 169 (583)
+|.|+|.- . .....+.| ++|||||+|.||.++|+.|+.. |++|++.++..+ ..+.+.+.|+.. .
T Consensus 135 ~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~----~ 202 (330)
T 2gcg_A 135 VKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEFQAEF----V 202 (330)
T ss_dssp HHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTTTCEE----C
T ss_pred HHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhcCcee----C
Confidence 45566642 1 12356889 9999999999999999999987 888877666533 345556667763 3
Q ss_pred CCHhhhhccCCeEEEeccchHH-HHHH-HHHHhcCCCCcEEEEecC
Q 007951 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~G 213 (583)
+..+++++||+|++++|+... ..++ +++.+.|++|++|+.++-
T Consensus 203 -~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~sr 247 (330)
T 2gcg_A 203 -STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISR 247 (330)
T ss_dssp -CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSC
T ss_pred -CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence 788999999999999998644 4555 467788999998875543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-07 Score=98.81 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=66.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec------------C--CCcCCHhhhhc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------N--GTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~------------d--~t~~d~~Eav~ 177 (583)
|||+|||+|.||.++|..|.+ |++|++.++. +...+...+.|.... . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDIL-PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECC-HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999863 6777655544 433444444443100 0 01346778889
Q ss_pred cCCeEEEeccch-----------HHHHHHHHHHhcCCCCcEEEEec
Q 007951 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 178 ~ADIVILavpd~-----------a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++|+||+++|+. ...+++++|.+ +++|++|++.+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S 117 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS 117 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC
Confidence 999999999987 47788999999 99999888743
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-08 Score=100.84 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=113.9
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----------cHHHHHHcCceecC----------CCcC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN----------GTLG 170 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----------s~~~A~~~G~~~~d----------~t~~ 170 (583)
+.||+|||.|.||..+|..+..+ |++|++.+...+. .++...+.|..... ..+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~ 79 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCT 79 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEEC
T ss_pred CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccccc
Confidence 37899999999999999999998 9998877654221 11222233322100 0145
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
++.|++++||+|+=++|-..- .+++.+|-++.++++||. -++++.+..+.+ .....-+|+..||=-|.+.+
T Consensus 80 ~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m--- 153 (319)
T 3ado_A 80 NLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYI--- 153 (319)
T ss_dssp CHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTC---
T ss_pred chHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCcccc---
Confidence 778899999999999996555 469999999999999884 778888887765 22333589999998888773
Q ss_pred HhccccccCCCceE-EEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 248 YVQGKEINGAGINS-SFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 248 f~~G~e~~G~Gv~a-liAv~qd~sgeale~a~ala~aIG~~ 287 (583)
+. =+.++...+++.++.+.+++..+|..
T Consensus 154 ------------~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 154 ------------PLVELVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp ------------CEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred ------------chHHhcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 22 14568889999999999999999964
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-09 Score=110.11 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=73.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+ +.+.+.|+.. .+.++++++||+|+++
T Consensus 142 ~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~l~e~l~~aDiVil~ 207 (333)
T 2d0i_A 142 ESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKELKARY-----MDIDELLEKSDIVILA 207 (333)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHHHTEEE-----CCHHHHHHHCSEEEEC
T ss_pred CCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCcee-----cCHHHHHhhCCEEEEc
Confidence 46889 9999999999999999999987 8888776665433 5556667763 4788999999999999
Q ss_pred ccch-HHHHHHH-HHHhcCCCCcEEEEec
Q 007951 186 ISDA-AQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~-a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
+|.. ....++. ++.+.|++| +|+.++
T Consensus 208 vp~~~~t~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 208 LPLTRDTYHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp CCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred CCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence 9987 4455664 567889999 877553
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-09 Score=110.15 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=96.8
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
++.|+|... ....+.| ++|||||+|.||.++|+.|+.. |.+|+++++..... .++... ....+.+
T Consensus 124 ~~~g~W~~~-~~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~-~~~~~l~ 188 (315)
T 3pp8_A 124 KNQALWKPL-PEYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY-VGREELR 188 (315)
T ss_dssp HHTTCCCCC-CCCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE-ESHHHHH
T ss_pred HHhcccCCC-CCCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh-cccCCHH
Confidence 355677654 3467889 9999999999999999999987 99987776654321 233210 0124688
Q ss_pred hhhccCCeEEEeccch-HHHHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDA-AQADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~-a~~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
|++++||+|++++|.. ....++ .+..+.||+|++|+.++ |-. +..+++..+. ...+||....|--+.+.
T Consensus 189 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~-gA~lDV~~~EPl~~~~p- 266 (315)
T 3pp8_A 189 AFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK-GAMLDVFSQEPLPQESP- 266 (315)
T ss_dssp HHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCCTTCG-
T ss_pred HHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc-EEEcCCCCCCCCCCCCh-
Confidence 9999999999999955 444566 46888999999988664 321 2223332222 23456666666333332
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++.. -+.+++||--
T Consensus 267 --L~~~--------~nvilTPHia 280 (315)
T 3pp8_A 267 --LWRH--------PRVAMTPHIA 280 (315)
T ss_dssp --GGGC--------TTEEECSSCS
T ss_pred --hhcC--------CCEEECCCCC
Confidence 2322 4678899863
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8e-09 Score=108.07 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=71.7
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
....+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+ ..+.++. ..+.+|++++||+|+
T Consensus 142 ~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~-----~~~l~ell~~aDvV~ 205 (343)
T 2yq5_A 142 ISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT-----YTDFDTVLKEADIVS 205 (343)
T ss_dssp CBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-----ECCHHHHHHHCSEEE
T ss_pred CccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-----ccCHHHHHhcCCEEE
Confidence 3567889 9999999999999999999987 9998776665432 1223333 348999999999999
Q ss_pred EeccchHH-HHHH-HHHHhcCCCCcEEEEec
Q 007951 184 LLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 184 Lavpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
+++|.... ..++ .+..+.||+|++|+.++
T Consensus 206 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 236 (343)
T 2yq5_A 206 LHTPLFPSTENMIGEKQLKEMKKSAYLINCA 236 (343)
T ss_dssp ECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred EcCCCCHHHHHHhhHHHHhhCCCCcEEEECC
Confidence 99995433 3444 36778899999998764
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=107.78 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=98.6
Q ss_pred eecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
++.|+|.... ....+.| |+|||||+|+||.++|+.++.. |.+|+++++..... ..+... ..+.
T Consensus 139 ~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~sl 202 (416)
T 3k5p_A 139 AHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AASL 202 (416)
T ss_dssp HHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CSSH
T ss_pred hhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cCCH
Confidence 4567775432 2456899 9999999999999999999987 99987766542211 123332 5689
Q ss_pred hhhhccCCeEEEeccchHHH-HHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchh
Q 007951 173 YETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~-~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+|++++||+|++++|..... .++ .+....||+|++|+.++ |-. ...+++..+. ...+||.-..|..+...
T Consensus 203 ~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~-gAalDVf~~EP~~~~~~ 281 (416)
T 3k5p_A 203 DELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLA-GAAIDVFPVEPASNGER 281 (416)
T ss_dssp HHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE-EEEECCCSSCCSSTTSC
T ss_pred HHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCcc-EEEeCCCCCCCCCcccc
Confidence 99999999999999976543 455 36778899999988663 321 2223332221 23455655556443311
Q ss_pred h-HHhHhccccccCCCceEEEeecC-CCCHHHHHH
Q 007951 244 V-RRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (583)
Q Consensus 244 v-R~lf~~G~e~~G~Gv~aliAv~q-d~sgeale~ 276 (583)
. ..++. --+.+++||- ..|.++.+.
T Consensus 282 ~~~pL~~--------~~nvilTPHig~~T~ea~~~ 308 (416)
T 3k5p_A 282 FSTPLQG--------LENVILTPHIGGSTEEAQER 308 (416)
T ss_dssp CCCTTTT--------CTTEEECCSCTTCCHHHHHH
T ss_pred cchhHhc--------CCCEEECCCCCCCCHHHHHH
Confidence 0 01111 2468899995 566665443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.2e-07 Score=96.73 Aligned_cols=203 Identities=19% Similarity=0.179 Sum_probs=121.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcc---cHHHHHH---------------------cC-c
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AG-F 162 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~---s~~~A~~---------------------~G-~ 162 (583)
+-++||+|||+|.||.++|..|.+. .|+ +|++.++..++ ..+...+ .| +
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l 90 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKF 90 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCe
Confidence 3348999999999999999999864 168 88776665441 2222111 22 2
Q ss_pred eecCCCcCCHhhhhccCCeEEEeccchH------------HHHHHHHHHhcCCCCcEEEEecCchhhh--------h-hc
Q 007951 163 TEENGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGH--------L-QS 221 (583)
Q Consensus 163 ~~~d~t~~d~~Eav~~ADIVILavpd~a------------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~--------i-e~ 221 (583)
.. ..+ .+++++||+||+++|... ...+.+.|.+++++|++|++.+++.... + +.
T Consensus 91 ~~----ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~ 165 (478)
T 3g79_A 91 EC----TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEE 165 (478)
T ss_dssp EE----ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHH
T ss_pred EE----eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHh
Confidence 21 234 688999999999998653 3456678999999999998887764221 1 11
Q ss_pred ccccCCCCccEEEeccC--CCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCcccccchhhhh
Q 007951 222 MGLDFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEY 298 (583)
Q Consensus 222 ~~i~~p~dv~VI~v~Pn--gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aI-G~~~vieTtf~eE~ 298 (583)
.+.....++. +...|. .||..+.+... .+.++ ... +.+..+.+..++..+ +...+..++ ...-
T Consensus 166 ~g~~~~~d~~-v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~a 231 (478)
T 3g79_A 166 SGLKAGEDFA-LAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMS-ATAA 231 (478)
T ss_dssp HCCCBTTTBE-EEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEE-HHHH
T ss_pred cCCCcCCcee-EEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCC-HHHH
Confidence 1111122333 456773 34544332221 22333 233 567789999999999 664232222 2222
Q ss_pred hhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 299 ~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
+.-.+-+.+ +...--+++.-+...+.+.|+++++...
T Consensus 232 E~~Kl~~N~-~~a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 232 EVTKTAENT-FRDLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 222222333 2233344677777788889999886554
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-09 Score=108.98 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=96.4
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
++.|+|.-. ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++..... ..+ .+.. ...+.+
T Consensus 125 ~~~g~W~~~-~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~----~~~~l~ 189 (324)
T 3hg7_A 125 QKQRLWQSH-PYQGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVY----QLPALN 189 (324)
T ss_dssp HHTTCCCCC-CCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEE----CGGGHH
T ss_pred HhhCCCcCC-CCccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hccc----ccCCHH
Confidence 456778643 3467899 9999999999999999999987 99987766653221 111 1111 145789
Q ss_pred hhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
|++++||+|++++|.... ..++. +....||+|++|+.++ |-. +..+++..+. ...+||.-..|--+.+.
T Consensus 190 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-ga~lDV~~~EPl~~~~p- 267 (324)
T 3hg7_A 190 KMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG-MAVLDVFEQEPLPADSP- 267 (324)
T ss_dssp HHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSS-EEEESCCSSSSCCTTCT-
T ss_pred HHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCce-EEEeccCCCCCCCCCCh-
Confidence 999999999999995533 44554 5778899999998764 321 2233332221 23466666666333322
Q ss_pred HHhHhccccccCCCceEEEeecCC
Q 007951 245 RRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 245 R~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
++. --|.+++||--
T Consensus 268 --L~~--------~~nvilTPHia 281 (324)
T 3hg7_A 268 --LWG--------QPNLIITPHNS 281 (324)
T ss_dssp --TTT--------CTTEEECCSCS
T ss_pred --hhc--------CCCEEEeCCCc
Confidence 222 24778899863
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=104.30 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=75.4
Q ss_pred eeccccccc-cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH
Q 007951 94 VRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (583)
Q Consensus 94 ~~~~r~~f~-~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~ 172 (583)
+|.|+|... .....+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+. +.+ ++.. ..+.
T Consensus 129 ~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~----~~~l 193 (333)
T 1j4a_A 129 VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY----VDSL 193 (333)
T ss_dssp HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB----CSCH
T ss_pred HHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee----cCCH
Confidence 355666422 12456889 9999999999999999999987 99987766654332 222 3332 3378
Q ss_pred hhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEec
Q 007951 173 YETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
++++++||+|++++|... ...++ ++..+.||+|++|+.++
T Consensus 194 ~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~a 235 (333)
T 1j4a_A 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235 (333)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred HHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECC
Confidence 899999999999999654 34455 35778899999887553
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-06 Score=93.60 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=118.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh--------------
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-------------- 174 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-------------- 174 (583)
.| .|..|||+|.||.++|.+|.+. |++|++++++ ++..+... .|...-. ....+|
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L~-~g~~pi~--epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKLQ-NGQISIE--EPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHH-TTCCSSC--CTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHH-CCCCCcC--CCCHHHHHHhhcccCceEEe
Confidence 35 7899999999999999999999 9998766554 33333332 2321100 000111
Q ss_pred -hhccCCeEEEeccchH------------HHHHHHHHHhcCCCCcEEEEecCchhhhh--------hcccccCCCCccEE
Q 007951 175 -TISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGHL--------QSMGLDFPKNIGVI 233 (583)
Q Consensus 175 -av~~ADIVILavpd~a------------~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~i--------e~~~i~~p~dv~VI 233 (583)
-+++||+||+|||... ...+.+.|.+++++|++|++.+++..... +..+.....++. +
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~-v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIY-L 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEE-E
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeE-E
Confidence 0458999999999654 44566789999999999988877642211 111222222333 4
Q ss_pred Eecc--CCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhhhHhh
Q 007951 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311 (583)
Q Consensus 234 ~v~P--ngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqtvLsG 311 (583)
...| -.||..+.+... .+.++ ... +.++.+.+..++..++...++.++. ..-+.-.+-+.+. ..
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~AE~~Kl~~N~~-~a 223 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDA-RTAEMSKLMENTY-RD 223 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEH-HHHHHHHHHHHHH-HH
T ss_pred EECCCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCH-HHHHHHHHHHHHH-HH
Confidence 5667 334444322221 23433 333 5788999999999998643333332 2222222334332 23
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Q 007951 312 AVHGIVESLFRRFTENGMNEDLAYK 336 (583)
Q Consensus 312 ~~pAlieAl~d~~Ve~Gl~~e~A~~ 336 (583)
.--+++.-+...+.+.|+++++...
T Consensus 224 ~~Ia~~nE~~~l~e~~GiD~~~v~~ 248 (431)
T 3ojo_A 224 VNIALANELTKICNNLNINVLDVIE 248 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3334677777778888998875544
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-08 Score=104.34 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=75.7
Q ss_pred eecccccc--ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007951 94 VRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (583)
Q Consensus 94 ~~~~r~~f--~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d 171 (583)
+|.|+|.. ......+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+. + +.++. ..+
T Consensus 127 ~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~~~ 190 (333)
T 1dxy_A 127 LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD-----YVS 190 (333)
T ss_dssp HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-----ECC
T ss_pred HHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-----cCC
Confidence 35566642 123457889 9999999999999999999987 99987766654332 1 12232 347
Q ss_pred HhhhhccCCeEEEeccchHH-HHHH-HHHHhcCCCCcEEEEec
Q 007951 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a~-~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
.++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 88999999999999997653 4455 45778899999988653
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-08 Score=103.74 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=75.8
Q ss_pred eecccccc--ccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC
Q 007951 94 VRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (583)
Q Consensus 94 ~~~~r~~f--~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d 171 (583)
+|.|+|.. ......+.| ++|||||+|.||.++|+.|+.. |.+|++.++...+. + +.++. ..+
T Consensus 128 ~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~~~ 191 (331)
T 1xdw_A 128 TAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT-----QVS 191 (331)
T ss_dssp HTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-----ECC
T ss_pred HHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-----cCC
Confidence 45566643 122456889 9999999999999999999987 99987776654332 1 12332 357
Q ss_pred HhhhhccCCeEEEeccchH-HHHHH-HHHHhcCCCCcEEEEec
Q 007951 172 IYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd~a-~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
.++++++||+|++++|... ...++ ++..+.||+|++|+.++
T Consensus 192 l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 192 LDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp HHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECC
Confidence 8899999999999999754 33455 36778899999988664
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=8e-08 Score=87.91 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=80.7
Q ss_pred hhhcCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCe
Q 007951 106 DAFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 106 ~~l~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
..++- ++|+|||. |+||..++++|++. |++|+..++...+ -.|... ..++.|+.+..|+
T Consensus 10 ~l~~p-~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDl 72 (138)
T 1y81_A 10 NSKEF-RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDV 72 (138)
T ss_dssp ----C-CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCE
T ss_pred cccCC-CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCE
Confidence 33445 89999999 99999999999998 9985544443221 157664 5688898889999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+++++|++...++++++.. ...+.+|.+.+++.-...+. .-..++.+| -||++|-.
T Consensus 73 vii~vp~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~ 128 (138)
T 1y81_A 73 IVFVVPPKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEYS--FGRCIMVE 128 (138)
T ss_dssp EEECSCHHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEEE--CSCCHHHH
T ss_pred EEEEeCHHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEEE--cCCcceEE
Confidence 9999999999999998765 45566777777764222211 112355654 59998876
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-08 Score=101.37 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=70.0
Q ss_pred CEEEEEccchhHHHHHHHHHH-hhhhhcCCceEEEEec--CCcccHHHH-HHcCcee----cCC-----------CcCCH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR--KGSRSFAEA-RAAGFTE----ENG-----------TLGDI 172 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrd-sl~~~g~G~~ViVg~r--~~s~s~~~A-~~~G~~~----~d~-----------t~~d~ 172 (583)
|||+|||.|+||.++|..|.+ + |++|.+..+ .+++..+.+ .+.|+.. .++ ...++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP 76 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred ceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence 699999999999999999976 6 888877661 222334442 2333110 000 13467
Q ss_pred hhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++++++|+||++||+....+++++|.++++++++|+..
T Consensus 77 ~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 788999999999999999999999999999999887764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=96.37 Aligned_cols=119 Identities=20% Similarity=0.128 Sum_probs=82.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC------cCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t------~~d~~Eav~~ADIVILa 185 (583)
|||+|||+|+||.++|..|. + |.+|.+..|.. ...+...+.|+...... .....+.+..+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 88887776653 33445556687541100 00013456789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCchhh-hhhcccccCCCCccEEEec------cCCCchh
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAVC------PKGMGPS 243 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~-~ie~~~i~~p~dv~VI~v~------PngPg~~ 243 (583)
||+....++++++.+. .++++|++..|+... .+.+ .+|.+ .|+... ..+|+.+
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v 134 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYVGIVEHGAVRKSDTAV 134 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEEEEECCEEEECSSSEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEEEEEeeceEECCCCEE
Confidence 9999999999999875 566677788999754 4444 34443 444333 3456655
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-08 Score=106.42 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHH---HHHH
Q 007951 450 TAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL---TQQA 526 (583)
Q Consensus 450 ~~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~---~~~~ 526 (583)
..|...+++.|.+|.|.+.|+++..|++|.+.|.++.+.++|.+.|++||+++||+||+..--+|......-. ++++
T Consensus 252 LsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~~ 331 (525)
T 3fr7_A 252 LLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYEC 331 (525)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHHH
Confidence 4677888899999999999999999999999999999999999999999999999996532112211222222 5899
Q ss_pred HhhhccCCccchhhHH----------------hhhcChHHHHHHHHhccCCccee
Q 007951 527 LVAVDNDAPINGDLIS----------------NFLSDPVHGAIEVCAQLRPTVDI 565 (583)
Q Consensus 527 ~~~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 565 (583)
|..|.+|+++++-+.+ ++++|.+.++=+.-.+|||.-+|
T Consensus 332 ~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vr~~r~~~~~ 386 (525)
T 3fr7_A 332 YEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDL 386 (525)
T ss_dssp HHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSTTSHHHHHHHHHHHHCCTTCC
T ss_pred HHHHhCCHHHHHHHHhcCccchhccccccchhhhcccHHHHHHHHHHhcCCcccC
Confidence 9999999876555544 45678899999999999999887
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-06 Score=86.92 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=129.4
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCch---hh-hhhcccccCCCCccEE
Q 007951 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (583)
Q Consensus 159 ~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~-~ie~~~i~~p~dv~VI 233 (583)
..|+.. +.|..|+++++|++|+-+|-.. +.+++++|.++|++|++|....-++ +. .++. .. ++|+.|.
T Consensus 126 daGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIs 198 (358)
T 2b0j_A 126 DVGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNIT 198 (358)
T ss_dssp GGTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEE
T ss_pred HcCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCee
Confidence 368876 6788999999999999999665 8899999999999999999886664 22 2222 23 6899999
Q ss_pred EeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-cccccchhhhhhhhhhhhhhhHhhH
Q 007951 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (583)
Q Consensus 234 ~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~-~vieTtf~eE~~sDlfgeqtvLsG~ 312 (583)
..||-+ .+.. .|-.. +. ..-++.++++....|++..|.. +++. .|+.+..+-++-.
T Consensus 199 S~HPaa-VPgt------------~Gq~~-~g-~~yAtEEqIeklveLaksa~k~ay~vP--------Adl~SpV~DMgs~ 255 (358)
T 2b0j_A 199 SYHPGC-VPEM------------KGQVY-IA-EGYASEEAVNKLYEIGKIARGKAFKMP--------ANLIGPVCDMCSA 255 (358)
T ss_dssp ECBCSS-CTTT------------CCCEE-EE-ESSSCHHHHHHHHHHHHHHHSCEEEEE--------HHHHHHHHSTTHH
T ss_pred ccCCCC-CCCC------------CCccc-cc-cccCCHHHHHHHHHHHHHhCCCeEecc--------hhhccchhhhHHH
Confidence 999932 2221 13333 33 5567999999999999999975 2333 2455454444444
Q ss_pred HHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCc
Q 007951 313 VHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (583)
Q Consensus 313 ~pA----lieAl~d~~Ve-~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~ 364 (583)
+.+ .+-.-++...+ .|-|.+++-..+.++|.. ++.|+...|+..|.+.+..
T Consensus 256 vTAv~~AGiL~Y~~~vtkIlgAP~~mie~q~~esL~t-iasLve~~GI~gm~k~LnP 311 (358)
T 2b0j_A 256 VTATVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMKEKGIANMEEALDP 311 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHHHHHHCGGGHHHHSCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH
Confidence 444 34444555544 599999999999999875 9999999999999999876
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-08 Score=98.82 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=71.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+++ ++|+|||+|.||.+++..|.+. |.+|.+.+|..++..+.+.+.|+.. ..+..++++++|+||++|
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 3677 9999999999999999999998 8888877776544444555556553 347788899999999999
Q ss_pred cchHHHHHHHHH-HhcCCCCcEEEEecC
Q 007951 187 SDAAQADNYEKI-FSCMKPNSILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI-~~~Lk~GaiL~~a~G 213 (583)
|+....++...+ .+.+++|++|+++..
T Consensus 195 p~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 988753211112 356788998887655
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=86.02 Aligned_cols=116 Identities=9% Similarity=-0.005 Sum_probs=81.2
Q ss_pred hhhc-CCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCC--cccHHHHHHcCceecCCCcCCHhhhhcc
Q 007951 106 DAFN-GINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 106 ~~l~-gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~--s~s~~~A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
..|. - ++|+|||+ |+||..++++|++. |++|+..++.. .+ -.|... ..++.|+...
T Consensus 8 ~ll~~p-~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~------i~G~~~----~~sl~el~~~ 70 (145)
T 2duw_A 8 GILTST-RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT------LLGQQG----YATLADVPEK 70 (145)
T ss_dssp HHHHHC-CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE------ETTEEC----CSSTTTCSSC
T ss_pred HHHhCC-CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc------cCCeec----cCCHHHcCCC
Confidence 4454 4 88999999 89999999999998 88865444432 21 147764 4578888888
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
.|++++++|+....++++++.. ...+.+|.+.+.+.-...+. .-..++.++ .||++|-..
T Consensus 71 ~Dlvii~vp~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~~ 130 (145)
T 2duw_A 71 VDMVDVFRNSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSVV--MDRCPAIEL 130 (145)
T ss_dssp CSEEECCSCSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEEE--CSCCHHHHS
T ss_pred CCEEEEEeCHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEEE--cCCeeeEEc
Confidence 9999999999999999988765 45566666665553221111 112455554 599988773
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-08 Score=103.35 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=90.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|+||.++|+.|+.. |.+|++.++.. .. ...|.. ..+.++++++||+|+++
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~----~~-~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPR----QA-REPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----HH-HSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCh----hh-hccCcc-----cCCHHHHHHhCCEEEEe
Confidence 35788 9999999999999999999987 99887655421 11 123432 46889999999999999
Q ss_pred ccchHH-----HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 186 vpd~a~-----~~Vl~-eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+|.... ..++. ++.+.||+|++|+.++ |-. ...+++..+. ...+||....|. |... ++.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~-~A~LDV~~~EP~-~~~~---l~~--- 246 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADL-EVALDVWEGEPQ-ADPE---LAA--- 246 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCE-EEEESCCTTTTS-CCHH---HHT---
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc-eEEeeeeccCCC-Cchh---hcc---
Confidence 997663 34553 6788999999988654 321 1122222211 234566666673 2222 231
Q ss_pred cccCCCceEEEeecC-CCCHHH
Q 007951 253 EINGAGINSSFAVHQ-DVDGRA 273 (583)
Q Consensus 253 e~~G~Gv~aliAv~q-d~sgea 273 (583)
.+.+++||- ..+.++
T Consensus 247 ------~nvi~TPHiag~t~e~ 262 (380)
T 2o4c_A 247 ------RCLIATPHIAGYSLEG 262 (380)
T ss_dssp ------TCSEECSSCTTCCHHH
T ss_pred ------CCEEEccccCcCCHHH
Confidence 356789986 445554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=76.25 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=65.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCCHh----hhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIY----ETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~~----Eav~~ADIVILav 186 (583)
|+|+|||+|.+|..+++.|.+. |++|++.++..+ ..+... ..|+....+...+.. ..++++|+||+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKD-ICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7899999999999999999998 888877666433 333333 346531111112222 2267899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+......+..+.+.++++.+|..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9886665565666667777777655543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-08 Score=102.26 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=95.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|||||+|+||.++|+.|+.. |.+|+++++. ... ...+.. ..+.+|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~----~~~-~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPP----RAA-RGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHH----HHH-TTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCC----hHH-hccCcc-----cCCHHHHHhhCCEEEEc
Confidence 35778 9999999999999999999987 9998766542 111 112222 56899999999999999
Q ss_pred ccchHH-----HHHH-HHHHhcCCCCcEEEEec-Cch------hhhhhcccccCCCCccEEEeccCCCchhhHHhHhccc
Q 007951 186 ISDAAQ-----ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (583)
Q Consensus 186 vpd~a~-----~~Vl-~eI~~~Lk~GaiL~~a~-G~~------i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~ 252 (583)
+|.... ..++ .+....||+|++|+.++ |-. +..+++..+. ...+||.--.|. |.. .++.
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~-gA~LDV~e~EP~-~~~---~L~~--- 249 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPL-SVVLDVWEGEPD-LNV---ALLE--- 249 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCE-EEEESCCTTTTS-CCH---HHHH---
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCe-EEEeeccccCCC-Ccc---hhhh---
Confidence 996543 3344 35778899999988664 321 2223332221 234566666663 222 2332
Q ss_pred cccCCCceEEEeecC-CCCHHHHHH-----HHHHHHHhCC
Q 007951 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (583)
Q Consensus 253 e~~G~Gv~aliAv~q-d~sgeale~-----a~ala~aIG~ 286 (583)
.+.+++||- ..|.++... +..+..-++.
T Consensus 250 ------~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~ 283 (381)
T 3oet_A 250 ------AVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGR 283 (381)
T ss_dssp ------HSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 234688887 445555433 3445555654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.1e-07 Score=91.27 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=70.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|+|||+|.||.++++.|+.. |.+|++.++... ..+.+.+.|+... ...+..++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESD-LLARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 35778 9999999999999999999987 888877776543 2344456676520 023677889999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+|+..+.+ +....||+|++|++++
T Consensus 221 ~p~~~i~~---~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVTA---NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBCH---HHHHHSCTTCEEEECS
T ss_pred CChHHhCH---HHHHhcCCCCEEEEec
Confidence 99854422 3455789999988775
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.8e-08 Score=100.22 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=71.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
|||+|||.|+||.++|..|.++ |++|.+..|..+. .+.....|... .....+..+.+ +.+|+||++||+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPA-QDIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCC-EEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeec-cceecCchHhcCCCCCEEEEeCCccC
Confidence 7899999999999999999998 8888777776332 11112234211 00012344554 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcE-EEEecCchh
Q 007951 191 QADNYEKIFSCMKPNSI-LGLSHGFLL 216 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Gai-L~~a~G~~i 216 (583)
..++++++.++++++++ |+...|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 99999999999988875 567888864
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-07 Score=93.74 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=68.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC--ceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G--~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++|+|||+|.||.+++.+|.+. .|+ +|.++++..++..+.+.+.| +.. +.+.+++++++|+|+++||.
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~atp~ 206 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITVTLA 206 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEECCCC
T ss_pred cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEEeCC
Confidence 8999999999999999999864 155 77777776555555555556 553 56888999999999999995
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
. ..++.. +.+++|++|++.+++.
T Consensus 207 ~--~~v~~~--~~l~~g~~vi~~g~~~ 229 (312)
T 2i99_A 207 T--EPILFG--EWVKPGAHINAVGASR 229 (312)
T ss_dssp S--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred C--CcccCH--HHcCCCcEEEeCCCCC
Confidence 2 223322 5789999888775553
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-07 Score=84.96 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+ ++|+|||+|.||.++++.|+.. |++|++..+..++..+.+.+.|.... ...+..++++++|+||.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCCC
Confidence 7 9999999999999999999887 88877777765555566777775421 1457888999999999999976
Q ss_pred HHHHHHHHHHhcCCCCcEEEEe
Q 007951 190 AQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. ++. ...+++|.++++.
T Consensus 92 ~~--~~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDL 109 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEEC
T ss_pred Cc--Eee--HHHcCCCCEEEEc
Confidence 22 111 2567888887765
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-07 Score=90.69 Aligned_cols=94 Identities=21% Similarity=0.344 Sum_probs=70.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|+|||+|.||.++++.|+.. |.+|++.++... ..+.+.+.|+... ...+..++++++|+|+++
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSA-HLARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 45788 9999999999999999999987 888887776543 2333445665420 024678899999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+|+..+. ++....||+|++|++++
T Consensus 223 ~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CChhhhC---HHHHHhCCCCCEEEEEe
Confidence 9985432 24557799999888764
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=91.87 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=111.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceecC------CCcC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------GTLG 170 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~d------~t~~ 170 (583)
-+.|+||+|||.|.||..+|..+... |++|++.+... +..+.+.+ .+-.... -+..
T Consensus 313 ~~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~~-~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 385 (742)
T 3zwc_A 313 AQPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESDP-KQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS 385 (742)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSH-HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE
T ss_pred cccccEEEEEcccHHHHHHHHHHHhC------CCchhcccchH-hhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc
Confidence 34569999999999999999999988 99988765543 22222211 1100000 0012
Q ss_pred CHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCchhhHHh
Q 007951 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~l 247 (583)
+..+.+++||+||=+++-+.- .+++.+|-+++++++||. -++++.+..+.+ .....-+|+..|+=-|.+.++
T Consensus 386 ~~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m~-- 460 (742)
T 3zwc_A 386 SSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVMR-- 460 (742)
T ss_dssp SCGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTCC--
T ss_pred CcHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCCc--
Confidence 233567899999999996555 369999999999999874 678888887765 223335799999977877731
Q ss_pred HhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 248 f~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.-= |.++...+++.++.+.++.+.+|..
T Consensus 461 -----------LVE-vi~g~~Ts~e~~~~~~~~~~~lgK~ 488 (742)
T 3zwc_A 461 -----------LLE-VIPSRYSSPTTIATVMSLSKKIGKI 488 (742)
T ss_dssp -----------EEE-EEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred -----------eEE-EecCCCCCHHHHHHHHHHHHHhCCC
Confidence 112 4568889999999999999999975
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=89.76 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=70.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--------eEEEEecCCc---ccHHHHHH-c--------CceecC--CCc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEARA-A--------GFTEEN--GTL 169 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--------~ViVg~r~~s---~s~~~A~~-~--------G~~~~d--~t~ 169 (583)
.||+|||.|+.|.|+|.-|.++ |. +|.++.|+.+ +....... . |+...+ ...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999887 43 4777766532 11112111 1 111000 014
Q ss_pred CCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEE-EEecCc
Q 007951 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGF 214 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~ 214 (583)
.|+.+++++||+||+++|.+...++++++.++++++..| +.+.|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 578899999999999999999999999999999998864 566776
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-07 Score=90.78 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=67.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++| +|+|||+|.||.+++.+|.+. |.+|.+.+|+.++..+.+.+.|.. ..+..++ +++|+|++++|
T Consensus 115 l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~tp 180 (263)
T 2d5c_A 115 LKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNATR 180 (263)
T ss_dssp CCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECSS
T ss_pred CCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEccC
Confidence 455 799999999999999999988 888888777655545556566654 3467778 99999999999
Q ss_pred chHHHH---HHHHHHhcCCCCcEEEEec
Q 007951 188 DAAQAD---NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 188 d~a~~~---Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+..+.. ++. .+.+++|++|+++.
T Consensus 181 ~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 181 VGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp TTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 986532 222 46688898887653
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-07 Score=96.99 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=72.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.||.++|+.|+.. |.+|++.++. ......+...|+. ..++++++++||+|++++
T Consensus 254 ~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~-----~~~l~ell~~aDiVi~~~ 320 (479)
T 1v8b_A 254 LISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITCT 320 (479)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEECC
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE-----ecCHHHHHhcCCEEEECC
Confidence 5788 9999999999999999999988 9988776654 3323356677886 468999999999999997
Q ss_pred cchHHHHHH-HHHHhcCCCCcEEEEecCchh
Q 007951 187 SDAAQADNY-EKIFSCMKPNSILGLSHGFLL 216 (583)
Q Consensus 187 pd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~i 216 (583)
... .++ .+....||+|++|+.++-+.+
T Consensus 321 ~t~---~lI~~~~l~~MK~gailiNvgrg~~ 348 (479)
T 1v8b_A 321 GNV---DVIKLEHLLKMKNNAVVGNIGHFDD 348 (479)
T ss_dssp SSS---SSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred Chh---hhcCHHHHhhcCCCcEEEEeCCCCc
Confidence 332 334 356778999999997755443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-07 Score=92.69 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=71.8
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|.+|..+|+.++.- |.+|+++++... +...+.|+. ..+.+|++++||+|++
T Consensus 136 ~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~-----~~~l~ell~~sDivsl 200 (334)
T 3kb6_A 136 ARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV-----YTSLDELLKESDVISL 200 (334)
T ss_dssp BCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE-----ECCHHHHHHHCSEEEE
T ss_pred cceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce-----ecCHHHHHhhCCEEEE
Confidence 467889 9999999999999999999877 989876655422 233455665 4689999999999999
Q ss_pred eccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 185 LISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 185 avpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
++|-... ..++. +....||+|++|+ .+-|
T Consensus 201 h~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG 232 (334)
T 3kb6_A 201 HVPYTKETHHMINEERISLMKDGVYLINTARG 232 (334)
T ss_dssp CCCCCTTTTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred cCCCChhhccCcCHHHHhhcCCCeEEEecCcc
Confidence 9995443 34554 5677899999887 4444
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=94.35 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=72.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. +.....|...|+. ..+++|++++||+|+++
T Consensus 207 ~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVilt 273 (436)
T 3h9u_A 207 VMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred CcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEEC
Confidence 45678 9999999999999999999988 9887765543 4444566778887 46899999999999987
Q ss_pred ccchHHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
+..... +. +....||+|++|+.++-+
T Consensus 274 ~gt~~i---I~~e~l~~MK~gAIVINvgRg 300 (436)
T 3h9u_A 274 TGNDDI---ITSEHFPRMRDDAIVCNIGHF 300 (436)
T ss_dssp SSCSCS---BCTTTGGGCCTTEEEEECSSS
T ss_pred CCCcCc---cCHHHHhhcCCCcEEEEeCCC
Confidence 654332 33 567789999998866543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.3e-07 Score=98.03 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=72.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++... ....+...|+. ..++++++++||+|+++
T Consensus 273 ~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~~-~~~~a~~~G~~-----~~~l~ell~~aDiVi~~ 339 (494)
T 3d64_A 273 VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDPI-CALQAAMEGYR-----VVTMEYAADKADIFVTA 339 (494)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCHH-HHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCChH-hHHHHHHcCCE-----eCCHHHHHhcCCEEEEC
Confidence 35788 9999999999999999999977 889877665432 23345566876 45899999999999999
Q ss_pred ccchHHHHHH-HHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+... .++ .+..+.||+|++|+.++-..
T Consensus 340 ~~t~---~lI~~~~l~~MK~gAilINvgrg~ 367 (494)
T 3d64_A 340 TGNY---HVINHDHMKAMRHNAIVCNIGHFD 367 (494)
T ss_dssp SSSS---CSBCHHHHHHCCTTEEEEECSSSS
T ss_pred CCcc---cccCHHHHhhCCCCcEEEEcCCCc
Confidence 8422 234 35777899999998665443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-06 Score=82.49 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=58.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
+||||||+|.||..++++|.+. |++++...+.+.+. .+ . ..+.++++ .++|+|++++|+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRGEH----EK---M-----VRGIDEFLQREMDVAVEAASQQA 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCCC----TT---E-----ESSHHHHTTSCCSEEEECSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCcch----hh---h-----cCCHHHHhcCCCCEEEECCCHHH
Confidence 5899999999999999999876 88864333332221 11 2 46888888 69999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 007951 191 QADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.+++.. .++.|+.|++.
T Consensus 63 ~~~~~~~---~l~~G~~vv~~ 80 (236)
T 2dc1_A 63 VKDYAEK---ILKAGIDLIVL 80 (236)
T ss_dssp HHHHHHH---HHHTTCEEEES
T ss_pred HHHHHHH---HHHCCCcEEEE
Confidence 8877754 35578766554
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.1e-06 Score=89.36 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=73.0
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++++|||+|.+|..+|+.++.. |.+|++..+. +.....+...|+. +.+.+|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cchhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 35788 9999999999999999999987 8888776554 3334556677886 45889999999999998
Q ss_pred ccchHHHHHH-HHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+... .++ .+....||+|++|+.++-+.
T Consensus 310 tgt~---~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 310 TGNK---DVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CSSS---SSBCHHHHHHSCTTEEEEECSSST
T ss_pred CCCc---cccCHHHHhcCCCCeEEEEcCCCC
Confidence 7532 244 35677899999988765554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=90.31 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=70.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC---------CC----------
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT---------- 168 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d---------~t---------- 168 (583)
+.+ .||+|||+|.+|...++.++.. |.+|++.++.. ...+.+.+.|....+ +.
T Consensus 182 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~-~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 182 VKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVRP-EVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp ECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSG-GGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred cCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence 356 8999999999999999999988 88887766654 456667777764210 00
Q ss_pred --cCCHhhhhccCCeEEEec--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 169 --LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 169 --~~d~~Eav~~ADIVILav--pd~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
..++.++++++|+||.++ |......++ ++....||||++|++++
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 113568899999999875 433333333 57788899999999885
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.9e-06 Score=83.51 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC--ceEEEEecCCcccHHHHHHcC---------ceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G--~~ViVg~r~~s~s~~~A~~~G---------~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|+||.++|..|..+ | .+|++.++..++....+...+ +.. ...+. +++++||
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~aD 71 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADAD 71 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCCC
Confidence 7999999999999999999988 7 577766665433333332211 111 02455 7889999
Q ss_pred eEEEeccchHH--------------------HHHHHHHHhcCCCCcE-EEEecCch
Q 007951 181 LVLLLISDAAQ--------------------ADNYEKIFSCMKPNSI-LGLSHGFL 215 (583)
Q Consensus 181 IVILavpd~a~--------------------~~Vl~eI~~~Lk~Gai-L~~a~G~~ 215 (583)
+||+++|+... .++++++.++. ++.+ |..+-+..
T Consensus 72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVD 126 (309)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHH
T ss_pred EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHH
Confidence 99999997653 46666777665 4444 44444443
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=4.1e-06 Score=86.20 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=86.2
Q ss_pred hcCCCEEEEE-cc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEE
Q 007951 108 FNGINQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (583)
Q Consensus 108 l~gikkIgII-G~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVI 183 (583)
+.. ++|+|| |+ |++|..++++|++. |+++++..+..... ..-.|+.. ..++.|+.+ ..|+++
T Consensus 11 ~~~-~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~av 76 (305)
T 2fp4_A 11 VDK-NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASV 76 (305)
T ss_dssp CCT-TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEE
T ss_pred hCC-CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEE
Confidence 444 889999 99 99999999999998 99865555543211 01257765 567889888 899999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCc-cEEEeccCCCchhhH
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI-GVIAVCPKGMGPSVR 245 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv-~VI~v~PngPg~~vR 245 (583)
+++|+..+.+++++.... .-..+|.+++|+..+...+ .....+.. .+..+.||+||...+
T Consensus 77 I~vP~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~-l~~~a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 77 IYVPPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVR-VKHRLLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHTTCSSCEEECSSSCEEEET
T ss_pred EecCHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHH-HHHHHHhcCCcEEEeCCCCeEecc
Confidence 999999999999985442 2345788999997543111 11222333 455678999998854
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.7e-06 Score=84.18 Aligned_cols=118 Identities=14% Similarity=0.207 Sum_probs=80.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||+|||+ |.||..++++|++. |++++...+..... ....|+.. ..+++|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999988 88865555442110 01357664 568888887 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
..+.+++.+.... ....+|.++.|+.....++ ....-+...+..+.||++|...
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~~~~-l~~~A~~~gv~liGPNc~Gi~~ 128 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLDMLT-VKVKLDEAGVRMIGPNTPGVIT 128 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSCCEEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEecCCcceec
Confidence 9999999875542 2233567889997543211 1111122334457799988763
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=5.8e-06 Score=84.27 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=82.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
++|+|+|+ |.||..+++++++. |++++......... ....|+.. ..++.|+.+ .+|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 88865555443210 01357765 567888888 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
..+.+++++.... .-..+|.++.||.....++ .....+...+..+.||++|...
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~a~~~gi~vigPNc~Gii~ 128 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTLDMVR-AVEEIKALGSRLIGGNCPGIIS 128 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEeCCCCeEEc
Confidence 9999999985542 2234677899997543211 1111122344456699998774
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=72.66 Aligned_cols=121 Identities=9% Similarity=0.046 Sum_probs=80.8
Q ss_pred hhhhc-CCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 105 PDAFN-GINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 105 ~~~l~-gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
...|+ - ++|+|||. |.+|..++++|++. |++|+ ....... .-.|... ..++.|+....
T Consensus 16 ~~ll~~p-~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v~-~Vnp~~~-----~i~G~~~----y~sl~~l~~~v 78 (144)
T 2d59_A 16 REILTRY-KKIALVGASPKPERDANIVMKYLLEH------GYDVY-PVNPKYE-----EVLGRKC----YPSVLDIPDKI 78 (144)
T ss_dssp HHHHHHC-CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEE-EECTTCS-----EETTEEC----BSSGGGCSSCC
T ss_pred HHHHcCC-CEEEEEccCCCCCchHHHHHHHHHHC------CCEEE-EECCCCC-----eECCeec----cCCHHHcCCCC
Confidence 34564 5 89999999 79999999999998 88743 3332211 1146664 56788888889
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
|++++++|+..+.++++++...- .+.+ ++..|+.-..+.+ ..-..++.++ .||++|-...+++
T Consensus 79 Dlvvi~vp~~~~~~vv~~~~~~g-i~~i-~~~~g~~~~~l~~--~a~~~Gi~vv--Gpnc~gv~~~~~~ 141 (144)
T 2d59_A 79 EVVDLFVKPKLTMEYVEQAIKKG-AKVV-WFQYNTYNREASK--KADEAGLIIV--ANRCMMREHERLL 141 (144)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHT-CSEE-EECTTCCCHHHHH--HHHHTTCEEE--ESCCHHHHHHHHH
T ss_pred CEEEEEeCHHHHHHHHHHHHHcC-CCEE-EECCCchHHHHHH--HHHHcCCEEE--cCCchhhcchhhc
Confidence 99999999999999998865532 2234 4556653111111 0112466655 4999998866654
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.06 E-value=7e-06 Score=82.71 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=64.1
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+||||||+|.||.. ++.+|++. .+++++ +.++..++..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888763 156665 44444444455666778764 678999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE
Q 007951 190 AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.+.++..... +.|+-|.
T Consensus 78 ~h~~~~~~al---~~gk~vl 94 (308)
T 3uuw_A 78 THYEIIKILL---NLGVHVY 94 (308)
T ss_dssp GHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHH---HCCCcEE
Confidence 9988877543 4555433
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-06 Score=89.73 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=73.1
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++.++ ++...+.|.+.|+. +.+..++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~-~~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEI-DPINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 5678 9999999999999999999987 888766554 44455678888986 357788999999999999
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~ 215 (583)
+.... +. +..+.||+|.+|+.++-+.
T Consensus 338 gt~~~---i~~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 338 GNKDI---IMLEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp SSSCS---BCHHHHHHSCTTCEEEECSSSG
T ss_pred CCHHH---HHHHHHHhcCCCcEEEEeCCCC
Confidence 86542 33 5667799999988765443
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-06 Score=88.78 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=67.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHc----CceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|.||.+++.+|... .+ .+|.+++|..++..+.+.+. |+.. ..+.+.+++++++|+|++||
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~-----~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~aT 202 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKH-----LGIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 202 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH-----SCCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred CeEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEEec
Confidence 8999999999999999998753 03 36777777755555555553 5321 01568889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|......++. .+.+++|+.|...+.+.
T Consensus 203 ps~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 203 ADKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred cCCCCCceec--HHHcCCCCEEEECCCCC
Confidence 9863222332 25688999888776553
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.05 E-value=9.1e-06 Score=83.13 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=60.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999999999999875 1566653 3443334445566677654 678999998 89999999999
Q ss_pred hHHHHHHHHHH
Q 007951 189 AAQADNYEKIF 199 (583)
Q Consensus 189 ~a~~~Vl~eI~ 199 (583)
..+.++.....
T Consensus 76 ~~h~~~~~~al 86 (344)
T 3euw_A 76 STHVDLITRAV 86 (344)
T ss_dssp GGHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 99988877543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-06 Score=90.28 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=71.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. +.....|...|+. +.+++++++++|+|+++
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 35678 9999999999999999999987 9888776554 3334566778876 46899999999999997
Q ss_pred ccchHHHHHHH-HHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~ 214 (583)
+-. ..++. +....||+|++|+.++-+
T Consensus 283 tgt---~~lI~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 283 TGN---KNVVTREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp SSC---SCSBCHHHHHHSCTTEEEEECSST
T ss_pred CCC---cccCCHHHHHhcCCCcEEEEecCC
Confidence 331 22444 567789999988866433
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=81.92 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=60.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.||..++.+|++. .+++++ +.++..++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999874 156655 33444445556667777731 1578999987 79999999999
Q ss_pred hHHHHHHHHH
Q 007951 189 AAQADNYEKI 198 (583)
Q Consensus 189 ~a~~~Vl~eI 198 (583)
..+.++....
T Consensus 78 ~~h~~~~~~a 87 (330)
T 3e9m_A 78 QGHYSAAKLA 87 (330)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877654
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=82.42 Aligned_cols=87 Identities=9% Similarity=0.058 Sum_probs=63.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||||||+|.||..++.+|++. ..+++++.. ++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999874 115666533 444344445566778764 678999987 79999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++..... +.|+-|.
T Consensus 86 ~~h~~~~~~al---~~gk~v~ 103 (354)
T 3q2i_A 86 GLHPTQSIECS---EAGFHVM 103 (354)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCCEE
Confidence 99988776543 3455443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=81.16 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=62.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
+||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999999999999874 1566653 344434444556667765 468899987 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++..... +.|+-|.
T Consensus 74 ~~h~~~~~~al---~~gk~v~ 91 (331)
T 4hkt_A 74 DTHADLIERFA---RAGKAIF 91 (331)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred hhHHHHHHHHH---HcCCcEE
Confidence 99988777543 3455433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.8e-05 Score=70.67 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=64.3
Q ss_pred cchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCC---Hhhh-hc
Q 007951 103 LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-IS 177 (583)
Q Consensus 103 ~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d---~~Ea-v~ 177 (583)
..++...+ ++|.|||+|.+|..+++.|+.. |++|++..+..+ ..+.+. ..|...-.+...+ ..++ +.
T Consensus 12 ~~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~-~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~ 83 (155)
T 2g1u_A 12 HMSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEY-AFHRLNSEFSGFTVVGDAAEFETLKECGME 83 (155)
T ss_dssp -----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGG-GGGGSCTTCCSEEEESCTTSHHHHHTTTGG
T ss_pred hhhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHhcCCCcEEEecCCCHHHHHHcCcc
Confidence 34677888 9999999999999999999998 888877766543 334443 4564321111122 2223 67
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCc-EEEEecC
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
++|+||+++++......+..+...+.+.. ++..+.+
T Consensus 84 ~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 84 KADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 89999999998777665555555443333 4444443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.98 E-value=8e-06 Score=87.37 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC-------------CCc-----
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL----- 169 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d-------------~t~----- 169 (583)
+.+ .||+|||+|.+|...++.++.. |.+|++.++... ..+.+.+.|..... +..
T Consensus 188 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 188 VPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPA-AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp ECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTT-HHHHHHHTTCEECCCCC-----------------C
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCceeecccccccccccccchhhhcch
Confidence 456 8999999999999999999987 988877666544 45666667764200 001
Q ss_pred -------CCHhhhhccCCeEEEec--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 170 -------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 170 -------~d~~Eav~~ADIVILav--pd~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
.++.+++++||+||.++ |....+.++ ++....||||++|++++
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14578899999999885 543333333 47888899999999885
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.2e-05 Score=71.76 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=79.1
Q ss_pred hhh-cCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCC
Q 007951 106 DAF-NGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 106 ~~l-~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
..| +- ++|+|||. |++|..++++|++. |++|+ ..... +..+ .-.|... ..++.|+-...|
T Consensus 8 ~ll~~p-~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp~-~~~~--~i~G~~~----~~sl~el~~~vD 72 (140)
T 1iuk_A 8 AYLSQA-KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNPR-FQGE--ELFGEEA----VASLLDLKEPVD 72 (140)
T ss_dssp HHHHHC-CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECGG-GTTS--EETTEEC----BSSGGGCCSCCS
T ss_pred HHHcCC-CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCCC-cccC--cCCCEEe----cCCHHHCCCCCC
Confidence 445 44 89999999 89999999999998 98743 22221 1000 1146654 457888888899
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhH
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf 248 (583)
++++++|+....++++++...- .+.+|...+.+.-...+. .-..++.+| .||++|-...+..
T Consensus 73 lavi~vp~~~~~~v~~~~~~~g-i~~i~~~~g~~~~~~~~~---a~~~Gir~v--gpnc~g~~~~~~~ 134 (140)
T 1iuk_A 73 ILDVFRPPSALMDHLPEVLALR-PGLVWLQSGIRHPEFEKA---LKEAGIPVV--ADRCLMVEHKRLF 134 (140)
T ss_dssp EEEECSCHHHHTTTHHHHHHHC-CSCEEECTTCCCHHHHHH---HHHTTCCEE--ESCCHHHHHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHcC-CCEEEEcCCcCHHHHHHH---HHHcCCEEE--cCCccceEChhhc
Confidence 9999999999999998865532 234554443333211111 112466665 4999998765544
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=81.19 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=62.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCc--eecCCCcCCHhhhhcc--CCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGF--TEENGTLGDIYETISG--SDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~--~~~d~t~~d~~Eav~~--ADIVILav 186 (583)
.+|||||+|.||..++.+|++.+ .+++++. .++..++..+.+.+.|+ .. ..+.++++++ .|+|++++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVTS 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEECS
T ss_pred EEEEEECccHHHHHHHHHHHhhC----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEECC
Confidence 58999999999999999998321 1566553 34443444556677783 33 6789999876 89999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++.... ++.|+-|.
T Consensus 75 p~~~h~~~~~~a---l~~Gk~vl 94 (344)
T 3mz0_A 75 WGPAHESSVLKA---IKAQKYVF 94 (344)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred CchhHHHHHHHH---HHCCCcEE
Confidence 999998877754 34565443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=83.32 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=66.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++|+|||+|.||.+++++|+.. .++ +|.+++|. +..+.+.+ .|+... .+ +.++++++||+|++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~-----~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSAR-----FALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----SCCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHh-----CCCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 8999999999999999999874 033 67777777 55555543 465321 14 8999999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|... .++. .+.++||++|+++..+.
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~ 216 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSL 216 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSS
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCC
Confidence 9752 2332 35689999998887664
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=79.51 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=62.0
Q ss_pred CEEEEEccchhHHHH-HHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
++|||||+|.||..+ +.+|++. +++++. .++..++..+.+.+.|+.. ...+.+++++ +.|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999999998 8888765 777653 3444334445566677641 1568888886 5999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.+++... |+.|+.|.
T Consensus 72 ~~~h~~~~~~a---l~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAA---IRAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hhHhHHHHHHH---HHCCCeEE
Confidence 99998877654 34576443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-05 Score=81.77 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=62.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999874 1566653 3444344445566677631 1578999988 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++..... +.|+-|.
T Consensus 75 ~~h~~~~~~al---~~gk~v~ 92 (344)
T 3ezy_A 75 NTHSELVIACA---KAKKHVF 92 (344)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred cchHHHHHHHH---hcCCeEE
Confidence 99988776543 4455433
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=81.81 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=63.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhh--ccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav--~~ADIVILavpd 188 (583)
.||||||+|.||..++.+|++. .+++++.. ++..++..+.+.+.|+.. ..+.++++ ++.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999864 15665533 444344445566678764 67899999 679999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++.... ++.|+-|.
T Consensus 77 ~~h~~~~~~a---l~~gk~vl 94 (354)
T 3db2_A 77 DKHAEVIEQC---ARSGKHIY 94 (354)
T ss_dssp TSHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHcCCEEE
Confidence 9998877654 34565443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.6e-05 Score=66.22 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=61.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh---h-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---T-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E---a-v~~ADIVILavp 187 (583)
++|.|+|+|.+|.++++.|.+. |++|++.++. +...+.+.+.|+....+...+.+. + +.++|+||+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999998 9988766554 445566666776421111223221 1 468999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEec
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+......+-..+..+....++..+.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEc
Confidence 7665444444443344445555444
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=80.16 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=64.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~ 189 (583)
.+|||||+|.||..++.+|++. .+++++...+.+....+.+.+.|+.. ..|.++++. +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5799999999999999999875 15666544455554556677778764 678999987 789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE
Q 007951 190 AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.+.++.... |+.|+-|.
T Consensus 77 ~h~~~~~~a---l~aGkhVl 93 (359)
T 3e18_A 77 SHKELAISA---LEAGKHVV 93 (359)
T ss_dssp GHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHH---HHCCCCEE
Confidence 998877654 34566443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=79.81 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=58.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcC------ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG------FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G------~~~~d~t~~d~~Eav~~ADI 181 (583)
|||+|||.|+||.+++..|... |+ +|++.++..++....+. ..+ ... ...+ .+++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI---YAGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEE---EECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEE---EeCC-HHHhCCCCE
Confidence 6899999999999999999988 87 87766654332222221 111 111 0234 467899999
Q ss_pred EEEeccchH----------------HHHHHHHHHhcCCCCcEE-EEecCc
Q 007951 182 VLLLISDAA----------------QADNYEKIFSCMKPNSIL-GLSHGF 214 (583)
Q Consensus 182 VILavpd~a----------------~~~Vl~eI~~~Lk~GaiL-~~a~G~ 214 (583)
||+++|... ..+++++|.++. |+++| ..+-+.
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 999999633 345666676664 55544 444343
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00054 Score=74.09 Aligned_cols=190 Identities=13% Similarity=0.147 Sum_probs=111.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-------------------HHHcC-ceecCCCcCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-------------------ARAAG-FTEENGTLGD 171 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-------------------A~~~G-~~~~d~t~~d 171 (583)
.+|+|||+|-+|..+|..|.+. |++| +|.+.+++..+. +.+.| +.. ..+
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~------G~~V-~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~----tt~ 90 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALL------GHRV-VGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF----AES 90 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCEE-EEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----CSS
T ss_pred CEEEEEccCHHHHHHHHHHHhC------CCcE-EEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE----EcC
Confidence 7999999999999999999988 9987 466665433322 22233 221 457
Q ss_pred HhhhhccCCeEEEeccc----------hHHHHHHHHHHhcCC---CCcEEEEe----cCchh----hhhhcccccCCCCc
Q 007951 172 IYETISGSDLVLLLISD----------AAQADNYEKIFSCMK---PNSILGLS----HGFLL----GHLQSMGLDFPKNI 230 (583)
Q Consensus 172 ~~Eav~~ADIVILavpd----------~a~~~Vl~eI~~~Lk---~GaiL~~a----~G~~i----~~ie~~~i~~p~dv 230 (583)
..+++++||++|+|||. .....+.+.|.++|+ +|++|++- -|..- ..+++ . ..+.
T Consensus 91 ~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~~ 166 (444)
T 3vtf_A 91 AEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGGV 166 (444)
T ss_dssp HHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTTC
T ss_pred HHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCCC
Confidence 88899999999999872 134456677888886 46777654 34431 11221 1 1233
Q ss_pred cE-EEeccC--CCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccchhhhhhhhhhhhhh
Q 007951 231 GV-IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (583)
Q Consensus 231 ~V-I~v~Pn--gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTtf~eE~~sDlfgeqt 307 (583)
++ |...|- -||..+++....-+ .++. ..+.++.+.+..+...+... ++.|+.. +-+.-.+
T Consensus 167 ~f~v~~~PErl~eG~a~~d~~~~~r--------iViG---~~~~~a~~~~~~ly~~~~~~-~~~~~~~-~AE~~Kl---- 229 (444)
T 3vtf_A 167 KFSVASNPEFLREGSALEDFFKPDR--------IVIG---AGDERAASFLLDVYKAVDAP-KLVMKPR-EAELVKY---- 229 (444)
T ss_dssp CCEEEECCCCCCTTSHHHHHHSCSC--------EEEE---ESSHHHHHHHHHHTTTSCSC-EEEECHH-HHHHHHH----
T ss_pred CceeecCcccccCCccccccccCCc--------EEEc---CCCHHHHHHHHHHHhccCCC-EEEechh-HHHHHHH----
Confidence 32 445562 45666655554322 1122 12467778888888877654 2333332 1122222
Q ss_pred hHhhHHHH----HHHHHHHHHHHcCCCHHHH
Q 007951 308 ILLGAVHG----IVESLFRRFTENGMNEDLA 334 (583)
Q Consensus 308 vLsG~~pA----lieAl~d~~Ve~Gl~~e~A 334 (583)
+.++.-+ |+..+....-+.|++..+.
T Consensus 230 -~eN~~ravnIa~~NEla~ice~~GiDv~eV 259 (444)
T 3vtf_A 230 -ASNVFLALKISFANEVGLLAKRLGVDTYRV 259 (444)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2333333 6777777777777775543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.9e-05 Score=79.39 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=63.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCc--eecCCCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~--~~~d~t~~d~~Eav~--~ADIVILav 186 (583)
.+|||||+|.||..++.+|+..+ .+++++ +.++..++..+.+.+.|+ .. ..+.+++++ +.|+|++++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~t 95 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIITA 95 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEECS
T ss_pred eeEEEECCcHHHHHHHHHHHhhC----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEcC
Confidence 58999999999999999998321 156655 344444555566777783 33 678999887 589999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++..... +.|+-|.
T Consensus 96 p~~~h~~~~~~al---~aGk~Vl 115 (357)
T 3ec7_A 96 SNEAHADVAVAAL---NANKYVF 115 (357)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred CcHHHHHHHHHHH---HCCCCEE
Confidence 9999988776543 4565443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.7e-05 Score=66.49 Aligned_cols=94 Identities=20% Similarity=0.270 Sum_probs=60.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~---E-av~~ADIVILavp 187 (583)
++|.|||+|.+|..+++.|++. |++|++.+++ +...+.+.+.|+..-.+...+.+ + -+.++|+||+++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5799999999999999999998 9987766554 45566777778753111122221 1 2578999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEec
Q 007951 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~G-aiL~~a~ 212 (583)
+......+-.....+.++ .+|.-+.
T Consensus 81 ~~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 876654333223333333 3444443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.8e-05 Score=76.93 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=61.3
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|||||+|.||.. ++..|++. .+++++ +.++..++..+.+.+.|+.. ..+.+++.++.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 58999999999996 88888763 156665 44555445455666677653 456766667899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 007951 190 AQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL 208 (583)
.+.++.... ++.|+-|
T Consensus 77 ~h~~~~~~a---l~~G~~v 92 (319)
T 1tlt_A 77 SHFDVVSTL---LNAGVHV 92 (319)
T ss_dssp HHHHHHHHH---HHTTCEE
T ss_pred hHHHHHHHH---HHcCCeE
Confidence 998877654 3456643
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=76.95 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=61.5
Q ss_pred CEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCc-ccHHHHHHcCc-eecCCCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~-~~~d~t~~d~~Eav~--~ADIVILav 186 (583)
.+|||||+|.||..++..|+ .. .+++++...+.+. +..+.+.+.|+ .. ..+.+++++ +.|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999998 42 1566544444433 33345566676 33 568888886 699999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++.... |+.|+.|.
T Consensus 80 p~~~h~~~~~~a---l~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYA---MNAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred ChHhHHHHHHHH---HHCCCEEE
Confidence 999998877654 34576444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.80 E-value=7.5e-05 Score=76.21 Aligned_cols=88 Identities=22% Similarity=0.138 Sum_probs=58.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH----H---c--CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---A--GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~----~---~--G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+||.++|..|... |+ +|++.++..++....+. . . .... ....+. +++++||+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i--~~t~d~-~a~~~aDi 75 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKV--IGTDDY-ADISGSDV 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 87766655432222111 1 0 1111 002455 78899999
Q ss_pred EEEec--------------cch--HHHHHHHHHHhcCCCCcEEE
Q 007951 182 VLLLI--------------SDA--AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 182 VILav--------------pd~--a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
||+++ +.. ...+++++|.++. |+++|+
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii 118 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVI 118 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEE
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEE
Confidence 99999 322 2356777787775 566554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4e-05 Score=79.10 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=63.6
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.||||||+|.||. .++.+|++. .+++++ +.++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 799999875 155654 44454445556667778875 578899886 5899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEE
Q 007951 188 DAAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL 208 (583)
+..+.++..... +.|+-|
T Consensus 99 ~~~h~~~~~~al---~aGk~V 116 (350)
T 3rc1_A 99 AVLHAEWIDRAL---RAGKHV 116 (350)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HCCCcE
Confidence 999988877543 456543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7e-05 Score=65.36 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=58.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh---hh-hccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~---Ea-v~~ADIVI 183 (583)
+++ ++|.|+|+|.+|..+++.|++. |++|++..+. +...+.+.+.|.....+...+.+ ++ +.++|+|+
T Consensus 4 ~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 455 7899999999999999999988 8887766554 33333333445421111122322 22 67899999
Q ss_pred Eeccch-HHHHHHHHHHhcCCCCcEEEEecC
Q 007951 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 184 Lavpd~-a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
+++++. .....+......+.+..++..+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred ECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999975 332233333444555555555544
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.2e-05 Score=76.55 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=61.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcCceec-CCC--cCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NGT--LGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G~~~~-d~t--~~d~~Eav~~ADIVIL 184 (583)
+||+|||.|.||.++|..|... |+ +|++.++...+....+. ..+.... +.. ..+..++++++|+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 7999999999999999999988 87 87766554322221122 2333100 000 1112467889999999
Q ss_pred eccchH----------------HHHHHHHHHhcCCCCcEE-EEecCchh
Q 007951 185 LISDAA----------------QADNYEKIFSCMKPNSIL-GLSHGFLL 216 (583)
Q Consensus 185 avpd~a----------------~~~Vl~eI~~~Lk~GaiL-~~a~G~~i 216 (583)
+++... ..+++++|.++ .++++| ...-|+..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 995322 22566777775 566654 56667653
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.76 E-value=4.4e-05 Score=77.48 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=59.3
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~ 189 (583)
++|||||+|.||. .++.+|+.. .++++++.++..++..+.+.+.|+.. ...+..+++ +++|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676655554444445666777641 023445555 7899999999999
Q ss_pred HHHHHHHHHHhcCCCCcE
Q 007951 190 AQADNYEKIFSCMKPNSI 207 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~Gai 207 (583)
.+.+++... |+.|+-
T Consensus 75 ~h~~~~~~a---l~~Gk~ 89 (323)
T 1xea_A 75 VHSTLAAFF---LHLGIP 89 (323)
T ss_dssp GHHHHHHHH---HHTTCC
T ss_pred hHHHHHHHH---HHCCCe
Confidence 998887654 335653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=70.35 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=62.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---Hhhh-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Ea-v~~ADIVILavp 187 (583)
|+|.|||+|.+|..+++.|.+. |++|++.+++.++..+.+...|+..-.+...+ ..++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999998 99887766654433333445565321111222 2233 678999999999
Q ss_pred chHHHHHHHHHHhcC-CCCcEEEEe
Q 007951 188 DAAQADNYEKIFSCM-KPNSILGLS 211 (583)
Q Consensus 188 d~a~~~Vl~eI~~~L-k~GaiL~~a 211 (583)
+.....++..++..+ ....+|.-+
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~ 99 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLV 99 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 988766666555443 333455444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.74 E-value=7.2e-05 Score=63.21 Aligned_cols=92 Identities=16% Similarity=0.042 Sum_probs=61.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcC---CHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIVILavp 187 (583)
++|+|||.|.+|.++++.|.+. | ++|++..+.. ...+.....|+........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDL-AALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCH-HHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCH-HHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 7999999999999999999998 8 7877766653 3344444455432111122 24467789999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
......+++... +.|....+..+
T Consensus 79 ~~~~~~~~~~~~---~~g~~~~~~~~ 101 (118)
T 3ic5_A 79 FFLTPIIAKAAK---AAGAHYFDLTE 101 (118)
T ss_dssp GGGHHHHHHHHH---HTTCEEECCCS
T ss_pred chhhHHHHHHHH---HhCCCEEEecC
Confidence 887766665443 34554554443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.5e-05 Score=80.43 Aligned_cols=92 Identities=13% Similarity=0.014 Sum_probs=64.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---ceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G---~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
++|+|||+|.||.+++.+|+.. ....+|.+++|..++..+.+.+.+ +.. . +.+.++++ ++|+|+++||.
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~----~~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRV----FDIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----SCCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHh----CCccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeCC
Confidence 8999999999999999999874 002367777776555555554432 211 1 45788999 99999999997
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
.. .++. .+.+++|+.|.+...+.
T Consensus 198 ~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 198 RK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp SS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred CC--ceec--HHHcCCCeEEEECCCCC
Confidence 53 2222 25688999888775553
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.5e-05 Score=77.73 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=61.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||||||+|.||..++.+|+.. .+.+++ +.++..++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999875 134544 34444444455666667641 1578999987 79999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++.... |+.|+-|.
T Consensus 78 ~~h~~~~~~a---l~aGk~Vl 95 (329)
T 3evn_A 78 QDHYKVAKAA---LLAGKHVL 95 (329)
T ss_dssp GGHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 34565443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=67.47 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---Hhhh--hccCCe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Ea--v~~ADI 181 (583)
.+.+ ++|.|||+|.+|..+++.|++. .|++|++.+++ +...+.+.+.|+....+...+ ..++ +.++|+
T Consensus 36 ~~~~-~~v~IiG~G~~G~~~a~~L~~~-----~g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~ 108 (183)
T 3c85_A 36 NPGH-AQVLILGMGRIGTGAYDELRAR-----YGKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKL 108 (183)
T ss_dssp CCTT-CSEEEECCSHHHHHHHHHHHHH-----HCSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred CCCC-CcEEEECCCHHHHHHHHHHHhc-----cCCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCE
Confidence 3556 7899999999999999999863 05677766554 444566667776421111222 2344 678999
Q ss_pred EEEeccchHHHHHHHHHHhcCCC
Q 007951 182 VLLLISDAAQADNYEKIFSCMKP 204 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~ 204 (583)
||+++|+......+-.....+.+
T Consensus 109 vi~~~~~~~~~~~~~~~~~~~~~ 131 (183)
T 3c85_A 109 VLLAMPHHQGNQTALEQLQRRNY 131 (183)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCChHHHHHHHHHHHHHCC
Confidence 99999976654333333333443
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.71 E-value=6.7e-05 Score=76.60 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred hcCCCEEEEEccchhHHHH-HHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~-A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVI 183 (583)
++.+.||||||+|.||... +..+++. .+.+++ |.+++.++..+.|.+.|+.. ...|.+|+++ +.|+|+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEEE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEEE
Confidence 4455799999999999865 5566654 145654 33444455567778888742 1578999885 579999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++||+..+.++..... +.|+-|.
T Consensus 92 I~tP~~~H~~~~~~al---~aGkhVl 114 (350)
T 4had_A 92 IPLPTSQHIEWSIKAA---DAGKHVV 114 (350)
T ss_dssp ECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred EeCCCchhHHHHHHHH---hcCCEEE
Confidence 9999999988876543 3465443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-06 Score=83.28 Aligned_cols=94 Identities=15% Similarity=0.010 Sum_probs=63.3
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+|+|||.|.||.+++..|.+. |. +|++.+|+.++..+.+.+.+... ..+..++++++|+||.+||....
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVInatp~gm~ 179 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNTTSVGMK 179 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEECSSTTTT
T ss_pred eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEECCCCCCC
Confidence 799999999999999999998 88 88888886444333333333222 45677888999999999986432
Q ss_pred HH--HHHHHHhcCCCCcEEEEe-cCchhhhh
Q 007951 192 AD--NYEKIFSCMKPNSILGLS-HGFLLGHL 219 (583)
Q Consensus 192 ~~--Vl~eI~~~Lk~GaiL~~a-~G~~i~~i 219 (583)
.+ .+. .+.++++++|++. .+ ...++
T Consensus 180 p~~~~i~--~~~l~~~~~V~Divy~-~T~ll 207 (253)
T 3u62_A 180 GEELPVS--DDSLKNLSLVYDVIYF-DTPLV 207 (253)
T ss_dssp SCCCSCC--HHHHTTCSEEEECSSS-CCHHH
T ss_pred CCCCCCC--HHHhCcCCEEEEeeCC-CcHHH
Confidence 21 111 2335678877654 44 44444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00016 Score=72.20 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=88.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
+||+|+|+|.||..+++.+.+. +.+++...+.+.. ...|+.. ..++++++ ++|+||-.+.|...
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a~ 67 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNLL 67 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHHH
Confidence 7999999999999999999887 5555443444332 1367664 56777877 99999977777666
Q ss_pred HHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhH--HhHhc-cccccCCCceEEEeecC
Q 007951 192 ADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQ-GKEINGAGINSSFAVHQ 267 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR--~lf~~-G~e~~G~Gv~aliAv~q 267 (583)
.+.++ ++.|. +|+-..|++-..++. ....-+.+.+ ...||..--+.- .+-+. .+-..+.-+-. +-.|.
T Consensus 68 ~~~~~-----l~~g~~vVigTTG~s~e~~~~-l~~aa~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI-~E~HH 139 (243)
T 3qy9_A 68 FPLLD-----EDFHLPLVVATTGEKEKLLNK-LDELSQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDIEL-TEAHH 139 (243)
T ss_dssp HHHHT-----SCCCCCEEECCCSSHHHHHHH-HHHHTTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEEEE-EEEEC
T ss_pred HHHHH-----HhcCCceEeCCCCCCHHHHHH-HHHHHhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCEEE-EEcCC
Confidence 55543 66665 455667886432221 1122345555 588988755410 00000 00000011222 22233
Q ss_pred ----C-CCHHHHHHHHHHHHHhCC
Q 007951 268 ----D-VDGRATNVALGWSVALGS 286 (583)
Q Consensus 268 ----d-~sgeale~a~ala~aIG~ 286 (583)
| +||.++.+++.+ ++.|.
T Consensus 140 ~~K~DaPSGTA~~la~~i-~~~~~ 162 (243)
T 3qy9_A 140 NKKVDAPSGTLEKLYDVI-VSLKE 162 (243)
T ss_dssp TTCCSSSCHHHHHHHHHH-HHHST
T ss_pred CCCCCCCCHHHHHHHHHH-HhcCc
Confidence 2 678888888888 77764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.2e-05 Score=80.29 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=66.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCcee--cCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~--~d~t~~d~~Eav~~ADIVI 183 (583)
-+.| ++|+|||+|.+|.+.++.++.. |.+|++.++.. ...+.+.+ .|... ......+..+.++++|+||
T Consensus 165 ~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~~-~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 165 GVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDINI-DKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEE
Confidence 4778 9999999999999999999987 88877666543 33444444 45421 0000124567888999999
Q ss_pred EeccchH--HHHH-HHHHHhcCCCCcEEEEec
Q 007951 184 LLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 184 Lavpd~a--~~~V-l~eI~~~Lk~GaiL~~a~ 212 (583)
.+++... ...+ .++..+.|++|.+|++.+
T Consensus 237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred ECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 9885222 1112 345667899999888775
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=75.03 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=62.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|||||+|.||..++..|... .+++++. .++..++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999999874 1456543 34443444456667775100011568888886 59999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++.... |+.|+-|.
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 45676544
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.5e-05 Score=79.63 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=65.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCc---eecCCCcCCHhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~---~~~d~t~~d~~Eav~~ADIVI 183 (583)
+++ ++|.|||.|.||.+++..|.+. |. +|++.+|..++..+.+.+.+. ... ...+..+.+.++|+||
T Consensus 139 l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDivI 209 (297)
T 2egg_A 139 LDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDIII 209 (297)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEEE
T ss_pred CCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEEE
Confidence 567 9999999999999999999988 87 888888876665666666543 110 0124567788999999
Q ss_pred EeccchHHHHHHH-HH-HhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~-eI-~~~Lk~GaiL~~a 211 (583)
.++|......+-. .+ ...+++|.+|+|+
T Consensus 210 n~t~~~~~~~~~~~~i~~~~l~~~~~v~D~ 239 (297)
T 2egg_A 210 NTTSVGMHPRVEVQPLSLERLRPGVIVSDI 239 (297)
T ss_dssp ECSCTTCSSCCSCCSSCCTTCCTTCEEEEC
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEc
Confidence 9999765421000 01 1235566666554
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.4e-05 Score=78.04 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=57.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~ 189 (583)
.+|||||+|.||..++.+|++. .+++++...+.+....+.+.+. +.. ..+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999875 1456543333333222211111 322 467888885 799999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 007951 190 AQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL 208 (583)
.+.+++.+. ++.|+.|
T Consensus 81 ~h~~~~~~a---l~~Gk~v 96 (315)
T 3c1a_A 81 THAEITLAA---IASGKAV 96 (315)
T ss_dssp GHHHHHHHH---HHTTCEE
T ss_pred HHHHHHHHH---HHCCCcE
Confidence 998877754 3456543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=74.02 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=55.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc--Ccee-cCC--CcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--TLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~--G~~~-~d~--t~~d~~Eav~~ADIVIL 184 (583)
+||+|||.|++|.++|..|... |+ +|++.++..++....+... +... .+. +..+ .+++++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi 73 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVIL 73 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEE
Confidence 5899999999999999999887 87 7766555433222223321 1100 000 0123 467899999999
Q ss_pred eccchH----------------HHHHHHHHHhcCCCCcEEEE
Q 007951 185 LISDAA----------------QADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 185 avpd~a----------------~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+++... ..+++++|.++ .|+++|+.
T Consensus 74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~ 114 (304)
T 2v6b_A 74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV 114 (304)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 995332 14555666666 57766544
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.1e-05 Score=82.11 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=61.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|-+|.+++..|.+. |. +|++.+|+.++..+.+. ++.. ....+..++++++|+||.+
T Consensus 114 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~--~~~~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINK--INLSHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEE--ECHHHHHHTGGGCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hccc--ccHhhHHHHhcCCCEEEEC
Confidence 3678 9999999999999999999988 88 78888887655433332 2221 0133456778899999999
Q ss_pred ccchHHHHHHHHH-HhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKI-FSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI-~~~Lk~GaiL~~a 211 (583)
||......+-..+ ...++++.+|+|.
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~ 209 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDI 209 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEES
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEe
Confidence 9976543321001 2346777777766
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.60 E-value=9.7e-05 Score=75.29 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=62.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||||||+|.||..++.+|+.. . +.+++++. .++..++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999864 1 01234443 3444345556677778731 1578999987 69999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++.... |+.|+-|.
T Consensus 77 ~~H~~~~~~a---l~~GkhVl 94 (334)
T 3ohs_X 77 PQHKAAVMLC---LAAGKAVL 94 (334)
T ss_dssp GGHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HhcCCEEE
Confidence 9998877654 34565443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00013 Score=77.25 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=58.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+.| ++|+|||+|.||.++++.|+.. |. +|++.+|..++..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 165 l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 165 LHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSAT 235 (404)
T ss_dssp CTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEECC
T ss_pred ccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEcc
Confidence 678 9999999999999999999988 88 888877765544466777776421 1245677889999999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
|...
T Consensus 236 ~~~~ 239 (404)
T 1gpj_A 236 AAPH 239 (404)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7.6e-05 Score=79.28 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=67.8
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCc-----------------
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~----------------- 169 (583)
-+.+ ++|+|||+|.+|...++.++.. |.+|++.++.. ...+.+.+.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCG-GGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 3678 9999999999999999999987 88877666554 345566777765210000
Q ss_pred ------CCHhhhhccCCeEEEe--ccchHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 170 ------~d~~Eav~~ADIVILa--vpd~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
.+..+.++++|+||.+ +|......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256778899999999 5422222333 45566799999998775
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.2e-05 Score=77.16 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=57.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||+|||+|+||..++.+|.+. .+++++...+.+... +.+ .|+.. ..++++++.++|+|++++|+..+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence 5899999999999999999875 145554333333222 222 45543 45677777889999999999877
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 007951 192 ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.+.+. ..++.|..|++.
T Consensus 72 ~~~~~---~al~aG~~Vv~e 88 (320)
T 1f06_A 72 IPEQA---PKFAQFACTVDT 88 (320)
T ss_dssp HHHHH---HHHTTTSEEECC
T ss_pred HHHHH---HHHHCCCEEEEC
Confidence 55443 345567765544
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.8e-05 Score=77.09 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=63.2
Q ss_pred CEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEecc
Q 007951 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavp 187 (583)
.||||||+| .||..++.+|+.. .+++++...+.+ ++..+.+.+.|+.. ..|.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 589999999 9999999999875 155655444433 34445666778764 6789999874 999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++..... +.|+-|.
T Consensus 74 ~~~H~~~~~~al---~aGk~Vl 92 (387)
T 3moi_A 74 HQFHCEHVVQAS---EQGLHII 92 (387)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HCCCcee
Confidence 999988776543 3455443
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=72.55 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=56.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||||||+|+||..++..|++. .+++++...+.++.+. ++.|+.. ....++.+. .++|+|++|+|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653344333322 2256531 113444444 789999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 007951 192 ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.++.... ++.|+.|++.
T Consensus 79 ~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHH---HTTTCEEEEC
T ss_pred HHHHHHH---HHcCCeEEEC
Confidence 8777654 4557766554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00042 Score=70.72 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=45.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH--HcCc-------eecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGF-------TEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~--~~G~-------~~~d~t~~d~~Eav~~ADIV 182 (583)
|||+|||.|.+|.++|..|... +.|.+|++.++..++....+. ..+. .. ....+.++ +++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i--~~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKV--TGSNDYAD-TANSDIV 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEE--EEESCGGG-GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEE--EECCCHHH-HCCCCEE
Confidence 5899999999999999998875 225677766655433222221 1211 10 01245655 8999999
Q ss_pred EEeccc
Q 007951 183 LLLISD 188 (583)
Q Consensus 183 ILavpd 188 (583)
|+++|.
T Consensus 74 iiav~~ 79 (310)
T 1guz_A 74 IITAGL 79 (310)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999963
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=75.51 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=64.2
Q ss_pred CEEEEEccch---hHHHHHHHHHHhhhhhcCCceEEE--EecCCcccHHHHHHcCceecCCCcCCHhhhhcc-------C
Q 007951 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG-------S 179 (583)
Q Consensus 112 kkIgIIG~G~---mG~A~A~nLrdsl~~~g~G~~ViV--g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~-------A 179 (583)
.+|||||+|. ||..++.+++.. .+++++. .++..++..+.+.+.|+.. .....|.+|++++ .
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~-----~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD-----NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG-----GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTCC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC-----CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCCC
Confidence 5899999999 999999998875 0356653 3444455566677888831 1126789998865 8
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+|++++|+..+.++..... +.|+-|.
T Consensus 87 D~V~i~tp~~~H~~~~~~al---~aGkhVl 113 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAAL---EAGLHVV 113 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHH---HTTCEEE
T ss_pred CEEEECCCcHHHHHHHHHHH---HCCCeEE
Confidence 99999999999988776543 3565443
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=75.72 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=67.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC-------------cCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGD 171 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t-------------~~d 171 (583)
.+.| ++|+|||+|.+|.+.++.++.. |.+|++.++.. ...+.+.+.|.... +.. ..+
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~-~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s 240 (384)
T 1l7d_A 169 TVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRA-ATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 240 (384)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCS-TTHHHHHHTTCEECCC-------------------
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeecccccccccccccchhhcC
Confidence 4578 9999999999999999999987 88877666554 34566666776420 000 000
Q ss_pred ----------HhhhhccCCeEEEec--cchHHHHHH-HHHHhcCCCCcEEEEec
Q 007951 172 ----------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (583)
Q Consensus 172 ----------~~Eav~~ADIVILav--pd~a~~~Vl-~eI~~~Lk~GaiL~~a~ 212 (583)
..+.++++|+||.++ |......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 241 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 567788999999988 422122233 45667799999988775
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=70.66 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=61.6
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcC-ceecCCCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G-~~~~d~t~~d~~Eav~--~ADIVILav 186 (583)
.+|||||+|.+|. .++.+|+.. +++++ +.++..++..+.+.+.| ... ..|.+++++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 6899999999995 677888655 77754 44555556666677774 332 578899886 689999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL 208 (583)
|+..+.++.... |+.|+-|
T Consensus 75 p~~~h~~~~~~a---l~aGkhV 93 (336)
T 2p2s_A 75 IPCDRAELALRT---LDAGKDF 93 (336)
T ss_dssp CGGGHHHHHHHH---HHTTCEE
T ss_pred ChhhHHHHHHHH---HHCCCcE
Confidence 999998777653 3456643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00057 Score=70.52 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=56.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH--c-------C--ceecCCCcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-------G--FTEENGTLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~--~-------G--~~~~d~t~~d~~Eav~~A 179 (583)
+||+|||.|.||.++|..|... |+ +|++.+...++....+.. . . +.. ..+. +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~----t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG----ENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE----CCCH-HHHCCC
Confidence 6999999999999999999988 87 866555543322211110 0 1 111 2466 789999
Q ss_pred CeEEEec--cc--------------hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 180 DLVLLLI--SD--------------AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 180 DIVILav--pd--------------~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+||+++ |. ....+++++|.++. |+++|+++
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 9999998 42 11344556666654 66665443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00025 Score=77.48 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=70.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.|.| ++++|+|+|.+|.++|+.|+.. |.+|++.++. +.....+...|+. +.+.+++++.+|+|+.++
T Consensus 262 ~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~at 328 (488)
T 3ond_A 262 MIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTTT 328 (488)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEECS
T ss_pred cccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeCC
Confidence 3788 9999999999999999999988 9988776554 3345566677875 467889999999999887
Q ss_pred cchHHHHHH-HHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~ 214 (583)
.... ++ .+....|++|.+|..++.+
T Consensus 329 G~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 329 GNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 5332 23 2456778999988876544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00094 Score=60.27 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=60.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHHHcCceecCCCcCC---Hhhh-hccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~~~G~~~~d~t~~d---~~Ea-v~~ADIVIL 184 (583)
++|.|+|+|.+|..+++.|.+. |++|++..+..+... ......|+..-.+...+ ..++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999988 888877766433222 22223354321111222 2333 789999999
Q ss_pred eccchHHHHHHHHHHhcC-CCCcEEEEecC
Q 007951 185 LISDAAQADNYEKIFSCM-KPNSILGLSHG 213 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~L-k~GaiL~~a~G 213 (583)
++++......+..+...+ ....++..+.+
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 999887655555544444 33345555544
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=5.2e-05 Score=77.03 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=62.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCc---eecCCCcCCHhhhhccCCeE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~---~~~d~t~~d~~Eav~~ADIV 182 (583)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|..++..+.+.+.+- .. ..+.+++..++|+|
T Consensus 123 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDiI 191 (281)
T 3o8q_A 123 LLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDVI 191 (281)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEEE
T ss_pred CccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCEE
Confidence 3577 9999999999999999999988 86 888888876665566655432 11 23455555789999
Q ss_pred EEeccchHHHHHHHHH-HhcCCCCcEEEEe
Q 007951 183 LLLISDAAQADNYEKI-FSCMKPNSILGLS 211 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI-~~~Lk~GaiL~~a 211 (583)
|.+||.....+.. .+ ...++++.+|.|.
T Consensus 192 InaTp~gm~~~~~-~l~~~~l~~~~~V~Dl 220 (281)
T 3o8q_A 192 INSTSASLDGELP-AIDPVIFSSRSVCYDM 220 (281)
T ss_dssp EECSCCCC----C-SCCGGGEEEEEEEEES
T ss_pred EEcCcCCCCCCCC-CCCHHHhCcCCEEEEe
Confidence 9999987653210 01 1234556555554
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00028 Score=71.98 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhh---cCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEec
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~---g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILav 186 (583)
+|||||+|.||..++.+++.. ... ..+.+++. .++..++..+.+.+.|+.. ...|.+|+++ +.|+|+++|
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence 789999999999999988764 110 00124433 3444445556777788742 1578999885 579999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++.... |+.|+-|.
T Consensus 84 P~~~H~~~~~~a---l~aGkhVl 103 (390)
T 4h3v_A 84 PGDSHAEIAIAA---LEAGKHVL 103 (390)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred ChHHHHHHHHHH---HHcCCCce
Confidence 999998877654 34566544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00072 Score=69.87 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=46.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH--H-----cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--A-----AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~--~-----~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+||+|||.|.+|.++|..|... |+ +|++.++..++....+. . .+....-....|.++++++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999988 87 86665554332221111 1 111100000257777899999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
+++
T Consensus 84 ~a~ 86 (331)
T 1pzg_A 84 VTA 86 (331)
T ss_dssp ECC
T ss_pred Ecc
Confidence 998
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00029 Score=75.07 Aligned_cols=89 Identities=9% Similarity=0.112 Sum_probs=60.9
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecC-CCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d-~t~~d~~Eav~--~ADIVILav 186 (583)
.+|||||+|.||. .++.+|+.. .+++++ +.++..++..+.+.+.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899998764 145654 3344333444556667763100 01567888886 799999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL 208 (583)
|+..+.++.... |+.|+-|
T Consensus 159 p~~~h~~~~~~a---l~aGk~V 177 (433)
T 1h6d_A 159 PNSLHAEFAIRA---FKAGKHV 177 (433)
T ss_dssp CGGGHHHHHHHH---HHTTCEE
T ss_pred CchhHHHHHHHH---HHCCCcE
Confidence 999998877754 3456543
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00028 Score=74.61 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=63.1
Q ss_pred CEEEEEccch---hHHHHHHHHHHhhhhhcCC-ceEEE--EecCCcccHHHHHHcCceecCCCcCCHhhhhcc-------
Q 007951 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (583)
Q Consensus 112 kkIgIIG~G~---mG~A~A~nLrdsl~~~g~G-~~ViV--g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~------- 178 (583)
.+|||||+|. ||..++..++.. + ++++. .++..++..+.+.+.|+.. .....+.++++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56553 3444445556677788741 1126789998876
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.|+|++++|+..+.++.... |+.|+-|.
T Consensus 111 vD~V~I~tp~~~H~~~~~~a---l~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEF---LKRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHH---HTTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHH---HhCCCeEE
Confidence 89999999999998777654 45676544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00022 Score=74.48 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=66.1
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCcee--cCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~--~d~t~~d~~Eav~~ADIVI 183 (583)
-+++ ++|+|||.|.+|.+.++.++.. |.+|++.++... ..+.+.+ .|... ......+..++++++|+||
T Consensus 163 ~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 163 GVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHK-RLQYLDDVFGGRVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp BBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEE
Confidence 4778 9999999999999999999988 988877666533 3344433 44321 0001224567888999999
Q ss_pred EeccchH--HHH-HHHHHHhcCCCCcEEEEec
Q 007951 184 LLISDAA--QAD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 184 Lavpd~a--~~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
.+++... ... +.++..+.|++|.+|++.+
T Consensus 235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred ECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 9998542 112 2356678889998887665
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00034 Score=71.43 Aligned_cols=117 Identities=13% Similarity=0.247 Sum_probs=77.6
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.+|+|+|. |.||..++++|++. |++++......... + .-.|+.. ..+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g-~--~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGG-Q--NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTT-C--EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCC-c--eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 45788898 99999999999988 88755454432110 0 1257665 568888888 89999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
..+.+++++.... ....+|.++.||.....++ ....-+...+..+.||++|-.
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~A~~~gi~viGPNc~Gii 133 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPVHDTME-FVNYAEDVGVKIIGPNTPGIA 133 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEcCCCceee
Confidence 9999999886542 2233667889996432111 001111223445569988766
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0004 Score=70.91 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred hhhcCCC--EEEEEccchhHHHHHHHHHHhhhhh--cCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhc--c
Q 007951 106 DAFNGIN--QIGVIGWGSQGPAQAQNLRDSLAEA--KSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G 178 (583)
Q Consensus 106 ~~l~gik--kIgIIG~G~mG~A~A~nLrdsl~~~--g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ 178 (583)
..++.+| +|||||+|.||..++.+++....-. -.+.+++ |.++..++..+.+.+.|+.. ...|.+|+++ +
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~ 94 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPE 94 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTT
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCC
Confidence 3455533 7999999999999988876420000 0133544 33444556667788888742 1578999885 5
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.|+|++|||+..+.++....+ +.|+-|.
T Consensus 95 iDaV~IatP~~~H~~~a~~al---~aGkhVl 122 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAAL---EAGKHVW 122 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CcEEEECCChHHHHHHHHHHH---hcCCeEE
Confidence 799999999999988876543 3566544
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=9.9e-05 Score=73.91 Aligned_cols=77 Identities=14% Similarity=-0.003 Sum_probs=52.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILav 186 (583)
+++ +++.|||.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+... .-...+.+++.+ ++|+||.++
T Consensus 117 ~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn~t 188 (272)
T 1p77_A 117 RPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYG-NIQAVSMDSIPLQTYDLVINAT 188 (272)
T ss_dssp CTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGGGCCCSCCSEEEECC
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccC-CeEEeeHHHhccCCCCEEEECC
Confidence 567 9999999999999999999988 8889888887655555555432100 000123334434 899999999
Q ss_pred cchHHH
Q 007951 187 SDAAQA 192 (583)
Q Consensus 187 pd~a~~ 192 (583)
|.....
T Consensus 189 ~~~~~~ 194 (272)
T 1p77_A 189 SAGLSG 194 (272)
T ss_dssp CC----
T ss_pred CCCCCC
Confidence 987654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00046 Score=70.75 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=44.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCceecCCC-------cCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~~~d~t-------~~d~~Eav~~ADIV 182 (583)
+||+|||.|+||.+++..|+.. |+ ++++. +.++. ..++...++...... ..+..+++++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~-Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLI-DANES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEE-CSSHH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEE-eCCcc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 64 55544 44332 222222222110000 02345789999999
Q ss_pred EEeccch
Q 007951 183 LLLISDA 189 (583)
Q Consensus 183 ILavpd~ 189 (583)
|++++..
T Consensus 79 iia~~~~ 85 (316)
T 1ldn_A 79 VICAGAN 85 (316)
T ss_dssp EECCSCC
T ss_pred EEcCCCC
Confidence 9997643
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00044 Score=70.66 Aligned_cols=117 Identities=13% Similarity=0.248 Sum_probs=76.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--c-CCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~-ADIVILavp 187 (583)
.+|.|+|. |.||..++++|++. |++++........- + .-.|+.. ..+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g-~--~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGG-S--EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT-C--EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCC-c--eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46777798 99999999999988 88855455432100 0 1257765 567888876 5 999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
+....+++++.... ....+|+++.||.....++ ....-+...+..+.||++|-.
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~A~~~gi~viGPNc~Gii 134 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPVHDTMR-FVNYARQKGATIIGPNCPGAI 134 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEcCCCCeeE
Confidence 99999999986543 2233677889996432111 000011223444569988766
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00045 Score=72.35 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=62.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhh---hhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~---~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILa 185 (583)
.||||||+|.||..++.++++.-. +...+.+++.. ++..++..+.|.+.|+.. ...|.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 479999999999999999987400 00012354433 344445556677788742 1578999885 57999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+|+..+.++..... +.|+-|.
T Consensus 104 tp~~~H~~~~~~al---~aGkhVl 124 (412)
T 4gqa_A 104 SPNHLHYTMAMAAI---AAGKHVY 124 (412)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEE
T ss_pred CCcHHHHHHHHHHH---HcCCCeE
Confidence 99999988776543 4566544
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00053 Score=70.31 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=62.1
Q ss_pred CEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCc-eecCCCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~-~~~d~t~~d~~Eav~--~ADIVILav 186 (583)
.+|||||+| .+|..++..|++. +.+++++.. ++..++..+.+.+.|+ .. ..|.+|+++ +.|+|++++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPAV----FDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCEE----ESCHHHHHHSSCCSEEEECC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 589999999 8999999999864 114565433 4443444456667776 33 678999886 589999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++.... |+.|+-|.
T Consensus 91 p~~~H~~~~~~a---l~aGkhVl 110 (340)
T 1zh8_A 91 PVELNLPFIEKA---LRKGVHVI 110 (340)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred CchHHHHHHHHH---HHCCCcEE
Confidence 999998777654 34566443
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00022 Score=72.04 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=63.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCc---eecCCCcCCHhhhh-ccCCe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~---~~~d~t~~d~~Eav-~~ADI 181 (583)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+. . ..+.+++. .++|+
T Consensus 117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCSE
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCCE
Confidence 3567 9999999999999999999998 86 888888876666666666542 2 12333332 78999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||.+||.....+.-.--...++++.+|.|.
T Consensus 185 vInaTp~gm~~~~~~i~~~~l~~~~~V~Dl 214 (272)
T 3pwz_A 185 VVNATSASLTADLPPLPADVLGEAALAYEL 214 (272)
T ss_dssp EEECSSGGGGTCCCCCCGGGGTTCSEEEES
T ss_pred EEECCCCCCCCCCCCCCHHHhCcCCEEEEe
Confidence 999999765421100001235666666655
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00077 Score=64.92 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=61.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh---hh-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~---Ea-v~~ADIVILavp 187 (583)
++|.|+|+|.+|..+++.|.+. |+ |++. +.++...+.+. .|+..-.+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vi-d~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEE-SCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEE-ECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999887 87 6554 44444455555 66532111122322 33 789999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEecC
Q 007951 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~G-aiL~~a~G 213 (583)
+......+...+..+.++ .++..+..
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 886655544555556665 56666544
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00037 Score=72.08 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=58.0
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEecc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavp 187 (583)
.+|||||+|.||.. ++.+|++. .+++++...+.+. +..+.+.+.+... ...+.++++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 88988764 1566653334333 2223333333221 25789999875 499999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 78 ~~~H~~~~~~a---l~aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLA---MSKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHH---HHTTCEEE
T ss_pred cHHHHHHHHHH---HHCCCeEE
Confidence 99998877654 34565443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00028 Score=70.50 Aligned_cols=76 Identities=22% Similarity=0.104 Sum_probs=53.9
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILav 186 (583)
++| +++.|+|.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+... .-...+.+++. .++|+||.++
T Consensus 117 l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~-~~~~~~~~~~~~~~~DivVn~t 188 (271)
T 1nyt_A 117 RPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIINAT 188 (271)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEECC
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccC-CeeEecHHHhccCCCCEEEECC
Confidence 567 9999999999999999999998 8888888877555455555543200 00022333333 5899999999
Q ss_pred cchHH
Q 007951 187 SDAAQ 191 (583)
Q Consensus 187 pd~a~ 191 (583)
|....
T Consensus 189 ~~~~~ 193 (271)
T 1nyt_A 189 SSGIS 193 (271)
T ss_dssp SCGGG
T ss_pred CCCCC
Confidence 97654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00064 Score=69.21 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=59.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhh----------ccC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SGS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav----------~~A 179 (583)
.+|||||+ |.+|..++..|++. +.+++...+.+......+... +... ..+.++++ ++.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~v 73 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEGV 73 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCCC
T ss_pred eEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCCC
Confidence 78999999 78999999999987 776554444443332222232 2222 56777776 679
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+|++++|+..+.++..... +.|+-|.
T Consensus 74 D~V~I~tP~~~H~~~~~~al---~aGkhVl 100 (312)
T 3o9z_A 74 DYLSIASPNHLHYPQIRMAL---RLGANAL 100 (312)
T ss_dssp SEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred cEEEECCCchhhHHHHHHHH---HCCCeEE
Confidence 99999999999988776543 4566544
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00049 Score=72.54 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=51.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILa 185 (583)
.|+| ++|+|+|+|+||..+|+.|.+. |.+|++.++..++..+.+.+.|... .+..++.. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~~-----v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EChHHHhccCCcEeecc
Confidence 5889 9999999999999999999998 9998866655444344555556542 34455544 89999977
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
..
T Consensus 238 a~ 239 (364)
T 1leh_A 238 AL 239 (364)
T ss_dssp SC
T ss_pred ch
Confidence 53
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00076 Score=68.85 Aligned_cols=85 Identities=8% Similarity=0.028 Sum_probs=58.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhh-----------cc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------SG 178 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav-----------~~ 178 (583)
.+|||||+ |.+|..++.+|++. +.+++...+.+......+... +... ..+.++++ ++
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~~ 73 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSATA 73 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTTS
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCCC
Confidence 78999999 79999999999987 776554444433322223332 2232 46777776 57
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.|+|++++|+..+.++..... +.|+-|.
T Consensus 74 vD~V~I~tP~~~H~~~~~~al---~aGkhVl 101 (318)
T 3oa2_A 74 LDYVSICSPNYLHYPHIAAGL---RLGCDVI 101 (318)
T ss_dssp CCEEEECSCGGGHHHHHHHHH---HTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHHH---HCCCeEE
Confidence 899999999999988776543 3565443
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0008 Score=69.12 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=59.3
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH---cCceecCCCcCCHhhhhcc--CCeEEEe
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~---~G~~~~d~t~~d~~Eav~~--ADIVILa 185 (583)
.+|||||+|.||. .++..|+.. .+++++...+.+ +..+.+.+ .|+.. ..+.++++.+ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 567667653 156665334433 44555555 45553 5788998875 8999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEE
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+|+..+.++.... |+.|+-|.
T Consensus 73 tp~~~h~~~~~~a---l~aGk~Vl 93 (349)
T 3i23_A 73 TPAHTHYDLAKQA---ILAGKSVI 93 (349)
T ss_dssp SCGGGHHHHHHHH---HHTTCEEE
T ss_pred CCcHHHHHHHHHH---HHcCCEEE
Confidence 9999998877654 34565444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=67.23 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=43.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH--Hc-------CceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-------GFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~--~~-------G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|.||.++|..|... |+ +|++.+...++....+. +. .... ....+. +++++||+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD~ 75 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGADV 75 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 75544433322211111 11 1111 012466 88999999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||+++
T Consensus 76 Vi~a~ 80 (322)
T 1t2d_A 76 VIVTA 80 (322)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99998
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=68.59 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=57.6
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|.||.. ++..|+.. .+++++...+.+.... +.+. +... ..+.+++++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777654 1566654444433222 2233 4443 578999987 7899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 77 ~~~H~~~~~~a---l~aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLA---LNAGKHVV 95 (364)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hHHHHHHHHHH---HHCCCcEE
Confidence 99998877653 34566544
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0012 Score=70.15 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=59.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HH---HcCc---eecCCCcC----CHhhhhc--c
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR---AAGF---TEENGTLG----DIYETIS--G 178 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~---~~G~---~~~d~t~~----d~~Eav~--~ 178 (583)
.+|||||+|.||..++.+|+.. .+++++...+.+....+. +. +.|+ .. .. +.+++++ +
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKV----FGNGNDDYKNMLKDKN 91 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEE----ECSSTTTHHHHTTCTT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCce----eccCCCCHHHHhcCCC
Confidence 5899999999999999998864 156665444444333332 22 3453 22 44 8889887 5
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.|+|++++|+..+.++.... |+.|+-|.
T Consensus 92 vD~V~i~tp~~~h~~~~~~a---l~aGkhV~ 119 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAA---MKAGKIVG 119 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHH---HHTTCEEE
T ss_pred CCEEEEcCCcHHHHHHHHHH---HHCCCeEE
Confidence 89999999999998777653 44566443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00098 Score=69.06 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=60.8
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEecc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavp 187 (583)
.+|||||+|.+|. .++..++.. +++++...+. .++..+.+.+.|... ...+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999984 567777655 7776544444 344456667777431 15789999875 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 98 ~~~H~~~~~~a---l~aGkhVl 116 (361)
T 3u3x_A 98 SSERAELAIRA---MQHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHH---HHTTCEEE
T ss_pred hHHHHHHHHHH---HHCCCeEE
Confidence 99998877654 34566444
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=68.31 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=62.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecC--------------CCcCCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d--------------~t~~d~~Eav 176 (583)
.||||||+|.||..+++.|... .+++++...+.+. .....+..+|+...+ ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 4899999999999999999865 1455544333333 333455566643100 0124677888
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
.+.|+|++|+|...+.+.... +++.|+.|++.++
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~---~l~aGk~Vi~sap 111 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPL---YEKAGVKAIFQGG 111 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHH---HHHHTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHH---HHHcCCceEeecc
Confidence 899999999999988776653 3455766665544
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00043 Score=70.87 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=55.8
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHH-cCceecCCCcCCHhhhhcc--CCeEEEec
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~-~G~~~~d~t~~d~~Eav~~--ADIVILav 186 (583)
.+|||||+|.||.. ++.++.... .+++++ +.++..++. +.+.+ .|... ..|.++++.+ .|+|++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~----~~~~l~av~d~~~~~~-~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPE-EQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT 73 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT----TTEEEEEEECSSCCGG-GGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC----CCeEEEEEEcCCHhHH-HHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence 58999999999986 454242221 156665 334433333 33333 34443 5788998876 89999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEE
Q 007951 187 SDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
|+..+.++.... ++.|+.|.
T Consensus 74 p~~~h~~~~~~a---l~aGk~Vl 93 (345)
T 3f4l_A 74 HADSHFEYAKRA---LEAGKNVL 93 (345)
T ss_dssp CGGGHHHHHHHH---HHTTCEEE
T ss_pred ChHHHHHHHHHH---HHcCCcEE
Confidence 999998877654 34566554
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00091 Score=68.68 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=56.6
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavpd 188 (583)
.+|||||+|.||.. ++..|++. .+++++...+.+....+ +...+... ..|.++++.+ .|+|++++|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~-~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH-ADWPAIPV----VSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH-TTCSSCCE----ESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH-hhCCCCce----ECCHHHHhcCCCCCEEEEeCCh
Confidence 58999999999997 78888764 15565533444332221 11113332 5789999875 8999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++.... |+.|+-|.
T Consensus 78 ~~H~~~~~~a---l~aGkhV~ 95 (352)
T 3kux_A 78 DTHFPLAQSA---LAAGKHVV 95 (352)
T ss_dssp TTHHHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHH---HHCCCcEE
Confidence 9998877653 34566443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00073 Score=68.47 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=62.6
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
+ +++.|||.|-+|.+++..|.+. |.+|.+.+|..++..+.+ +.|+.. .+.+++ .++|+||.+||..
T Consensus 118 ~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp~G 183 (269)
T 3phh_A 118 Y-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATSAS 183 (269)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCTTC
T ss_pred C-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEcccCC
Confidence 7 9999999999999999999998 888999999877777777 777553 233343 3899999999965
Q ss_pred HHHH-HHH-H-HHhcCCCCcEEEEe
Q 007951 190 AQAD-NYE-K-IFSCMKPNSILGLS 211 (583)
Q Consensus 190 a~~~-Vl~-e-I~~~Lk~GaiL~~a 211 (583)
...+ .+. + +...++++.+|+|.
T Consensus 184 m~~~~~l~~~~l~~~l~~~~~v~D~ 208 (269)
T 3phh_A 184 LHNELPLNKEVLKGYFKEGKLAYDL 208 (269)
T ss_dssp CCCSCSSCHHHHHHHHHHCSEEEES
T ss_pred CCCCCCCChHHHHhhCCCCCEEEEe
Confidence 4321 111 1 22234566666655
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=68.31 Aligned_cols=84 Identities=11% Similarity=0.192 Sum_probs=58.2
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.+|||||+|.||.. ++..|+.. .+++++...+.+.. +.+.+. +... ..+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 67777654 15666544444332 234445 4443 578899887 7899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 75 ~~~H~~~~~~a---l~aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMAC---IQAGKHVV 93 (358)
T ss_dssp TTTHHHHHHHH---HHTTCEEE
T ss_pred cHHHHHHHHHH---HHcCCeEE
Confidence 99998877654 34566444
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=71.85 Aligned_cols=82 Identities=7% Similarity=0.092 Sum_probs=58.5
Q ss_pred CEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.+|||||+ |.||..++.+|+.. ..+++++. .++..++..+.+.+.|+.. .....+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999863 01566543 3443334445666777630 011578999885 6899999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
++|+..+.++....
T Consensus 115 ~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 115 SVKVPEHYEVVKNI 128 (479)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 99999998877653
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0022 Score=65.99 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-c-cHHHHHHcCceecCCCcCCHhhhh-----ccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-R-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~-s~~~A~~~G~~~~d~t~~d~~Eav-----~~ADIVIL 184 (583)
.||||||+|.+|..++..|.+.+ .+.+++...+.+. + ..+.+.+.|+... ..+.++++ ++.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999985521 1555544444433 3 3566778887520 23455664 45899999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
++|+..+.++....... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99998888777664332 34887776544
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0035 Score=64.18 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=44.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc---ccHHHHHHc--CceecCCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s---~s~~~A~~~--G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+||+|||.|+||.+++..|... |+ ++++.+...+ ...+..... .+.. ..+. +++++||+||+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi~ 83 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVIF 83 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEEE
Confidence 7999999999999999999887 76 7766655432 222332211 1221 2566 77899999999
Q ss_pred ec
Q 007951 185 LI 186 (583)
Q Consensus 185 av 186 (583)
+.
T Consensus 84 aa 85 (303)
T 2i6t_A 84 TV 85 (303)
T ss_dssp CC
T ss_pred cC
Confidence 97
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0028 Score=64.70 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=44.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccH----HHHHH---cCc--eecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF----AEARA---AGF--TEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~----~~A~~---~G~--~~~d~t~~d~~Eav~~AD 180 (583)
|||+|||.|.+|.++|..|... |+ ++.+.++..++.. +.... .+. .. ....+ .+++++||
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI--VGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEE--EEESC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEE--EEeCC-HHHhCCCC
Confidence 6899999999999999999988 76 7766655433221 11111 111 11 00235 78999999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+||++..
T Consensus 72 iVViaag 78 (294)
T 1oju_A 72 IIVVTAG 78 (294)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999864
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00097 Score=68.81 Aligned_cols=84 Identities=10% Similarity=0.116 Sum_probs=57.7
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHhhhhcc--CCeEEEecc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~Eav~~--ADIVILavp 187 (583)
.+|||||+|.||.. ++..|+.. .+++++...+.+... .+.+. +... ..|.++++++ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777664 156655444433332 33344 3443 5788999876 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 75 ~~~H~~~~~~a---l~aGkhVl 93 (362)
T 3fhl_A 75 DNTHYEYAGMA---LEAGKNVV 93 (362)
T ss_dssp GGGHHHHHHHH---HHTTCEEE
T ss_pred hHHHHHHHHHH---HHCCCeEE
Confidence 99998877654 34566443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=68.65 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=63.6
Q ss_pred CEEEEEc-cchhHHH-HH----HHHHHhhhhhcCC-ce----------EEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 112 kkIgIIG-~G~mG~A-~A----~nLrdsl~~~g~G-~~----------ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
.+||||| +|.||.. ++ ..+++. + .. +.+..+..++..+.+.+.|+.. ...|.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 77 777765 3 22 1256666666677788888842 1578999
Q ss_pred hhcc--CCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 175 av~~--ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++++ .|+|++++|+..+.++.... |+.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE
Confidence 8865 89999999999998776654 45676544
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0041 Score=63.46 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH--HcC-------ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~--~~G-------~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|.||.+++..|... |+ ++++.+...++....+. ..+ ... ....+. +++++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCCE
Confidence 6999999999999999999887 76 75444433322222111 111 110 002455 78999999
Q ss_pred EEEecc
Q 007951 182 VLLLIS 187 (583)
Q Consensus 182 VILavp 187 (583)
||+++.
T Consensus 74 Vi~a~g 79 (309)
T 1ur5_A 74 IVVTSG 79 (309)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999973
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=68.01 Aligned_cols=80 Identities=14% Similarity=0.298 Sum_probs=52.4
Q ss_pred CEEEEEccchhHHHHHHH--HHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~n--Lrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|+|||+|++|.++++. .... |++++...+.++..... ...|+...+ ..++++.+++.|+|++++|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~~--~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVYN--LDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEEE--GGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeeec--hhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 2233 77766666655433221 113433211 456788887679999999998
Q ss_pred HHHHHHHHHHh
Q 007951 190 AQADNYEKIFS 200 (583)
Q Consensus 190 a~~~Vl~eI~~ 200 (583)
.+.++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88888877654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00098 Score=71.00 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=58.0
Q ss_pred CEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.+|||||+ |.||..++.+|++. ..+++++...+. .++..+.+.+.|+.. .....+.+++++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999863 015665433343 334445566677630 001578899886 6899999
Q ss_pred eccchHHHHHHHHH
Q 007951 185 LISDAAQADNYEKI 198 (583)
Q Consensus 185 avpd~a~~~Vl~eI 198 (583)
++|+..+.++....
T Consensus 96 ~tp~~~H~~~~~~a 109 (438)
T 3btv_A 96 AIQVASHYEVVMPL 109 (438)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 99999998877653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=71.62 Aligned_cols=89 Identities=9% Similarity=0.055 Sum_probs=61.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEE-EEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
.||+|||+| +|...+..+++. ..+++++ |..+..+++.+.|.+.|+.. ..|.++++.+.|+|+++||+..
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 589999999 799888887754 1145654 34555667778899999875 6789999999999999999887
Q ss_pred HHHH-HHHHHhcCCCCcEEE
Q 007951 191 QADN-YEKIFSCMKPNSILG 209 (583)
Q Consensus 191 ~~~V-l~eI~~~Lk~GaiL~ 209 (583)
+... ++-....|+.|+-|.
T Consensus 79 h~~~~~~~a~~al~aGkhVl 98 (372)
T 4gmf_A 79 AGGAGTQLARHFLARGVHVI 98 (372)
T ss_dssp TTSHHHHHHHHHHHTTCEEE
T ss_pred cchhHHHHHHHHHHcCCcEE
Confidence 7322 222233455676544
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=65.02 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=54.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCceec-CC-CcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE-NG-TLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~~-d~-t~~d~~Eav~~ADIVILa 185 (583)
+||+|||.|.+|.+++..|... ++ ++++.+....+....+.. .+.... +- ...+..+++++||+||++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 81 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 81 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 6899999999999999999887 65 666555443322222222 221000 00 011236779999999998
Q ss_pred ccchH----------------HHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a----------------~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++... +.++.+.|.++ .|+++|+..
T Consensus 82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 87432 23344455555 577766554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=66.28 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=63.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH---hhh-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~---~Ea-v~~ADIVILavp 187 (583)
++|.|||+|.+|..+++.|++. |++|++.+ .++...+.+++.|+..--+...+. .++ +.+||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId-~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLD-HDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEE-CCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 5799999999999999999998 99876654 445567777788874311112222 223 688999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
+......+-..+..+.|. .+|.-+
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 876654444444445454 344444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0061 Score=63.11 Aligned_cols=72 Identities=19% Similarity=0.166 Sum_probs=46.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH----HHHHH---c--CceecCCCcCCHhhh
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF----AEARA---A--GFTEENGTLGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~----~~A~~---~--G~~~~d~t~~d~~Ea 175 (583)
..++. +||+|||.|.+|.++|..|... |+ ++++.+...++.. +.... . ..... ...+. ++
T Consensus 3 ~~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~a 72 (324)
T 3gvi_A 3 GSMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-AA 72 (324)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-GG
T ss_pred CCCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-HH
Confidence 44556 8999999999999999999988 76 7776665544322 11111 0 11110 02344 89
Q ss_pred hccCCeEEEecc
Q 007951 176 ISGSDLVLLLIS 187 (583)
Q Consensus 176 v~~ADIVILavp 187 (583)
+++||+||++..
T Consensus 73 ~~~aDiVIiaag 84 (324)
T 3gvi_A 73 IEGADVVIVTAG 84 (324)
T ss_dssp GTTCSEEEECCS
T ss_pred HCCCCEEEEccC
Confidence 999999999864
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0004 Score=72.19 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=65.3
Q ss_pred hhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCC----c--CCHhhhhccC
Q 007951 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t----~--~d~~Eav~~A 179 (583)
.++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ + .++.+.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 5788 99999999976 99999999987 88888887764444444433332110000 1 3578899999
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
|+||.+|+-... ++. ...+|+|++|+|++
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVg 275 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFA 275 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcC
Confidence 999999985321 111 23468998888875
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0059 Score=63.03 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=46.0
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHH--HcC-------ceecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~--~~G-------~~~~d~t~~d~~Eav~ 177 (583)
++. +||+|||.|.+|.++|..|... |+ ++++.+...++....+. ++. ... ...+..++++
T Consensus 3 m~~-~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~ 72 (321)
T 3p7m_A 3 MAR-KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLE 72 (321)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGT
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHC
Confidence 344 8999999999999999999987 66 77666554433222221 111 111 0112357899
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
+||+||++..
T Consensus 73 ~aDvVIi~ag 82 (321)
T 3p7m_A 73 NSDVVIVTAG 82 (321)
T ss_dssp TCSEEEECCS
T ss_pred CCCEEEEcCC
Confidence 9999999863
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00089 Score=65.78 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=70.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
++++|||+|++|.+++..+... ..|++++...+.++. ....+.-.|+...+ ..++++.++ +.|++++|+|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHD----RNKMQISMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCT----TSSEEEEEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcc----cCCeEEEEEEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCc
Confidence 6899999999999998874311 127777666666554 33221124665421 356777776 49999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEecc
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCP 237 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~P 237 (583)
....++.+.+.+.= =..++-|++- .+..|+++.|--++.
T Consensus 159 ~~aq~v~d~lv~~G-Ik~I~nFap~---------~l~vp~~v~v~~vdl 197 (212)
T 3keo_A 159 TEAQEVADILVKAG-IKGILSFSPV---------HLTLPKDIIVQYVDL 197 (212)
T ss_dssp GGHHHHHHHHHHHT-CCEEEECSSS---------CCCCCTTSEEEECCH
T ss_pred hhHHHHHHHHHHcC-CCEEEEcCCc---------ccCCCCCcEEEEeCc
Confidence 88777887655421 1225556542 235577877766654
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0031 Score=64.59 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=57.9
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEecc
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~---ADIVILavp 187 (583)
.+|||||+|.||. .++..|+.. .+++++...+.+.+ +.|+.. ..+.++++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 789998875 15665444443332 247664 6788998865 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEE
Q 007951 188 DAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+..+.++.... |+.|+-|.
T Consensus 91 ~~~H~~~~~~a---l~aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKA---LVAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHH---HHTTCEEE
T ss_pred cHHHHHHHHHH---HHcCCcEE
Confidence 99998877654 34566544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0067 Score=62.19 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=42.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcc-cHHHHHH--cCceec--C-CCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR-SFAEARA--AGFTEE--N-GTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~-s~~~A~~--~G~~~~--d-~t~~d~~Eav~~ADIVI 183 (583)
+||+|||.|++|.+++..|... |+ ++.+ .+.++. ....+.. .+.... + ....+..+++++||+||
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L-~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVv 79 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVI-IDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVV 79 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEE-ECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEE-EeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEE
Confidence 6999999999999999999877 64 5544 443332 2111221 111000 0 00124567899999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++++
T Consensus 80 i~ag 83 (317)
T 3d0o_A 80 ICAG 83 (317)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=66.52 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=55.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~ 189 (583)
.+|||||+|.||..++.+|.... ...+++++...+.+. .+.+.|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 58999999999999999887520 011455443233221 12234544 368889886 689999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEE
Q 007951 190 AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
.+.++.... |+.|+-|.
T Consensus 77 ~H~~~~~~a---l~aGkhVl 93 (294)
T 1lc0_A 77 SHEDYIRQF---LQAGKHVL 93 (294)
T ss_dssp GHHHHHHHH---HHTTCEEE
T ss_pred hHHHHHHHH---HHCCCcEE
Confidence 997777653 44566443
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0036 Score=64.76 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=58.8
Q ss_pred hhcCC-CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCC---HhhhhccCCe
Q 007951 107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD---IYETISGSDL 181 (583)
Q Consensus 107 ~l~gi-kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d---~~Eav~~ADI 181 (583)
-++|- |||.|||+|.+|..++..|.+ .++|.++.+.. +..+.+.+..-.. .| +.+ +.++++++|+
T Consensus 11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~~-~~~~~~~~~~~~~~~d--~~d~~~l~~~~~~~Dv 80 (365)
T 3abi_A 11 HIEGRHMKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVNN-ENLEKVKEFATPLKVD--ASNFDKLVEVMKEFEL 80 (365)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCH-HHHHHHTTTSEEEECC--TTCHHHHHHHHTTCSE
T ss_pred cccCCccEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcCH-HHHHHHhccCCcEEEe--cCCHHHHHHHHhCCCE
Confidence 34442 689999999999999999865 35777776653 3344443321110 01 223 4567899999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
||.++|+.....+.+.. ++.|.-+++.++
T Consensus 81 Vi~~~p~~~~~~v~~~~---~~~g~~yvD~s~ 109 (365)
T 3abi_A 81 VIGALPGFLGFKSIKAA---IKSKVDMVDVSF 109 (365)
T ss_dssp EEECCCGGGHHHHHHHH---HHHTCEEEECCC
T ss_pred EEEecCCcccchHHHHH---HhcCcceEeeec
Confidence 99999999877776642 334555555544
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=65.33 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=55.8
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcC-----ceecCCCcCCHhhhhccCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G-----~~~~d~t~~d~~Eav~~AD 180 (583)
.++| +++.|+|.|-+|.+++..|.+. |. +|++.+|..++..+.+.+.+ +........+..+.++++|
T Consensus 124 ~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~D 196 (283)
T 3jyo_A 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_dssp TCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSS
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCC
Confidence 4678 9999999999999999999988 88 68888887655554544332 1100000236677888999
Q ss_pred eEEEeccchH
Q 007951 181 LVLLLISDAA 190 (583)
Q Consensus 181 IVILavpd~a 190 (583)
+||.+||...
T Consensus 197 iVInaTp~Gm 206 (283)
T 3jyo_A 197 GVVNATPMGM 206 (283)
T ss_dssp EEEECSSTTS
T ss_pred EEEECCCCCC
Confidence 9999999654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0043 Score=64.28 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHH--HHcCceec--CCC-cCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--NGT-LGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A--~~~G~~~~--d~t-~~d~~Eav~~ADIVIL 184 (583)
+||+|||.|.+|.++|..|... |+ ++++.+...++....+ ...++... +-. ..+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999988 76 6665554332222212 22222100 000 1223568899999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 874
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0019 Score=65.84 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=57.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccH---HHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSF---AEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~---~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.||||||+|.+|..++..| .. +++++...+.+. +.. +.+.+.|+.. ....|.+|+++ +.|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 5899999999999888777 44 677654444332 222 2223346521 12578999886 4899999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
++|+..+.++.... |+.|+-|.
T Consensus 74 ~tp~~~H~~~~~~a---l~aGkhVl 95 (337)
T 3ip3_A 74 NTVFSLNGKILLEA---LERKIHAF 95 (337)
T ss_dssp CSSHHHHHHHHHHH---HHTTCEEE
T ss_pred eCCcchHHHHHHHH---HHCCCcEE
Confidence 99999998877654 34565443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0052 Score=63.37 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=45.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--c-------CceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~-------G~~~~d~t~~d~~Eav~~AD 180 (583)
|||+|||.|.||.++|..|... |+ ++++.+....+....+.+ + .... ...+..+++++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 6899999999999999999988 65 666655544332211111 1 1111 0124568899999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+||++..
T Consensus 72 vVii~ag 78 (314)
T 3nep_X 72 VCIITAG 78 (314)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999875
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0025 Score=68.94 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred CEEEEEccchh--HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---------CceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~m--G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---------G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|+| |.+++..|... +.-.| +|++.+.. +...+..... .+.. +.|.++++++||
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~--~~~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I~~----TtD~~eAl~dAD 77 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSID--ERMSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRYEA----VSTLKKALSAAD 77 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHC--SSCCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEEEE----ESSHHHHHTTCS
T ss_pred CEEEEECCChhHhHHHHHHHHHhc--cccCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeEEE----ECCHHHHhcCCC
Confidence 79999999998 68888888763 00015 76665544 3222222211 1222 468889999999
Q ss_pred eEEEeccchHHHHHHH
Q 007951 181 LVLLLISDAAQADNYE 196 (583)
Q Consensus 181 IVILavpd~a~~~Vl~ 196 (583)
+||+++++........
T Consensus 78 fVI~airvG~~~~~~~ 93 (450)
T 3fef_A 78 IVIISILPGSLDDMEV 93 (450)
T ss_dssp EEEECCCSSCHHHHHH
T ss_pred EEEeccccCCcccchh
Confidence 9999999876654333
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.005 Score=64.10 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=42.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcC--ceecC--CCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G--~~~~d--~t~~d~~Eav~~ADIVI 183 (583)
+||+|||.|.||.++|..|... |+ ++++.+...++....+. .++ +.... ....+.++ +++||+||
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVI 94 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVV 94 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEE
Confidence 8999999999999999999988 76 66555443322222211 111 10000 00235554 89999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 95 ita 97 (330)
T 3ldh_A 95 ITA 97 (330)
T ss_dssp ECC
T ss_pred EeC
Confidence 974
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0033 Score=64.15 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.0
Q ss_pred hcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++| +++.|||.|. +|..+|+.|... |..|.+..+. ..++.+.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999988 8888776532 246788999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+-.. ++. ...+|+|++|+|++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8532 222 25579999998874
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=66.97 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=50.8
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
++| +++.|||.|-+|.+++..|.+. |. +|.+.+|..++..+.+.+.+... ..+..+ + ++|+||.+|
T Consensus 120 ~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivInaT 186 (282)
T 3fbt_A 120 IKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIINCT 186 (282)
T ss_dssp CTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEECS
T ss_pred ccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEECC
Confidence 567 9999999999999999999998 88 88888887555444443322221 223334 4 899999999
Q ss_pred cchH
Q 007951 187 SDAA 190 (583)
Q Consensus 187 pd~a 190 (583)
|...
T Consensus 187 p~Gm 190 (282)
T 3fbt_A 187 PKGM 190 (282)
T ss_dssp STTS
T ss_pred ccCc
Confidence 8643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0073 Score=62.37 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=44.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCcee-cCC-CcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTE-ENG-TLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~-~d~-t~~d~~Eav~~ADIVILa 185 (583)
+||+|||.|++|.+++..|... ++ ++++.+...++....+.+ +.... .+- ...+..+++++||+||++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ 83 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence 7999999999999999999877 54 565554432222222221 22100 000 012446789999999998
Q ss_pred ccc
Q 007951 186 ISD 188 (583)
Q Consensus 186 vpd 188 (583)
.+.
T Consensus 84 ag~ 86 (326)
T 2zqz_A 84 AGA 86 (326)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0072 Score=62.16 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=44.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G------~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|++|.+++..|... ++ ++++.+...++....+.. +. +.. ..+..+++++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 64 665554432222222222 11 111 1244678999999
Q ss_pred EEEeccch
Q 007951 182 VLLLISDA 189 (583)
Q Consensus 182 VILavpd~ 189 (583)
||++.+..
T Consensus 76 Vii~ag~~ 83 (318)
T 1ez4_A 76 VVITAGAP 83 (318)
T ss_dssp EEECCCC-
T ss_pred EEECCCCC
Confidence 99998643
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0021 Score=66.42 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC---CcccHHHHHHc----CceecCCCcCC---Hhhh
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGD---IYET 175 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~---~s~s~~~A~~~----G~~~~d~t~~d---~~Ea 175 (583)
.++| +++.|+|.|-+|.+++..|.+. |. +|++..|. .++..+.+.+. |....-....+ ..+.
T Consensus 151 ~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 151 DIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh
Confidence 3678 9999999999999999999988 88 88888887 34434444332 21110000222 3456
Q ss_pred hccCCeEEEeccchHHHH----HHHHHHhcCCCCcEEEEe
Q 007951 176 ISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~----Vl~eI~~~Lk~GaiL~~a 211 (583)
+.++|+||.+||-..... .+. ....++++.+|.|.
T Consensus 224 l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dl 262 (315)
T 3tnl_A 224 IAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDV 262 (315)
T ss_dssp HHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEES
T ss_pred hcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEe
Confidence 789999999999654321 010 12335666666655
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0056 Score=62.67 Aligned_cols=67 Identities=24% Similarity=0.205 Sum_probs=43.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc---------CceecCCCcCCHhhhhccCCeE
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~---------G~~~~d~t~~d~~Eav~~ADIV 182 (583)
||+|||.|+||.+++..|... ++ ++++.+...++....+.+. ..... ...+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 699999999999999999877 66 5666555433222212211 21110 02455 789999999
Q ss_pred EEeccc
Q 007951 183 LLLISD 188 (583)
Q Consensus 183 ILavpd 188 (583)
|++.+.
T Consensus 72 i~~ag~ 77 (308)
T 2d4a_B 72 LVTAGI 77 (308)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999653
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0035 Score=63.52 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=92.1
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HHHHH----cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARA----AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~A~~----~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+||+|+| +|.||..+++.+.+. .+++++...+...... +...- .|+.. ..++++++.++|+||
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI 78 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI 78 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence 7899999 999999999998865 1567655444432110 00011 13332 467888899999999
Q ss_pred EeccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhH--HhHhc-cccc-cCCC
Q 007951 184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQ-GKEI-NGAG 258 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR--~lf~~-G~e~-~G~G 258 (583)
-+++|....+.+.... +.|. +|+=..|++-..++. ....-+.+.+ ...||..--+.- .+-+. .+.+ .++-
T Consensus 79 DfT~p~a~~~~~~~al---~~G~~vVigTTG~s~~~~~~-L~~aa~~~~v-v~a~N~s~Gv~l~~~~~~~aa~~l~~~~d 153 (272)
T 4f3y_A 79 DFTLPEGTLVHLDAAL---RHDVKLVIGTTGFSEPQKAQ-LRAAGEKIAL-VFSANMSVGVNVTMKLLEFAAKQFAQGYD 153 (272)
T ss_dssp ECSCHHHHHHHHHHHH---HHTCEEEECCCCCCHHHHHH-HHHHTTTSEE-EECSCCCHHHHHHHHHHHHHHHHTSSSCE
T ss_pred EcCCHHHHHHHHHHHH---HcCCCEEEECCCCCHHHHHH-HHHHhccCCE-EEECCCCHHHHHHHHHHHHHHHhcCcCCC
Confidence 9999988877776543 3344 444467876432211 1112234554 578887654410 00000 0000 0112
Q ss_pred ceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 007951 259 INSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (583)
Q Consensus 259 v~aliAv~q----d-~sgeale~a~ala~aIG~ 286 (583)
+-. +-.|. | +||.++.+++.+.++.|.
T Consensus 154 iei-~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (272)
T 4f3y_A 154 IEI-IEAHHRHKVDAPSGTALMMGETIAAATGR 185 (272)
T ss_dssp EEE-EEEECTTCCSSSCHHHHHHHHHHHHTTTC
T ss_pred EEE-EEecCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 222 33333 2 578888888888887764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0021 Score=66.84 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=65.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee---cCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~---~d~t~~d~~Eav~~ADIVIL 184 (583)
+++ ++|.|||.|.+|.+.++.++.. |.+|++.+++.++ .+.+.+.|... .+....+..+.++++|+||.
T Consensus 165 l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 165 VKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVER-LSYLETLFGSRVELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp BCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEE
Confidence 677 8999999999999999999988 8888777765433 44444443210 00001234567789999999
Q ss_pred eccchHH--HH-HHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQ--AD-NYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~--~~-Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++.... .. +.++..+.|++|.+|++.+
T Consensus 237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 9974331 11 1344567789999888764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.004 Score=67.45 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=60.3
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC---CHhhhhccCCeE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~---d~~Eav~~ADIV 182 (583)
..+++ ++|.|||.|.+|.+++..|.+. .|++|++..|..++..+.+...++......+. +..++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 44667 8999999999999999999875 14688888886554444443334321000022 344677899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|.++|+.....+... .+++|..+.+.
T Consensus 93 In~tp~~~~~~v~~a---~l~~g~~vvd~ 118 (467)
T 2axq_A 93 ISLIPYTFHPNVVKS---AIRTKTDVVTS 118 (467)
T ss_dssp EECSCGGGHHHHHHH---HHHHTCEEEEC
T ss_pred EECCchhhhHHHHHH---HHhcCCEEEEe
Confidence 999998866554432 23345554444
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0038 Score=62.92 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
.+ +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 45 8899999999999999999988 87 78888988666667776666432 11222 468999999999
Q ss_pred chHH
Q 007951 188 DAAQ 191 (583)
Q Consensus 188 d~a~ 191 (583)
....
T Consensus 185 ~gm~ 188 (271)
T 1npy_A 185 IGMK 188 (271)
T ss_dssp TTCT
T ss_pred CCcc
Confidence 7653
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0061 Score=64.10 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=49.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILa 185 (583)
.++| |+|+|+|+|++|...|+.|+.. |.+|++.+.. ....+.+.+.|... .+..++.. +||+++.|
T Consensus 172 ~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~-~~~~~~a~~~ga~~-----v~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 172 SLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTD-TERVAHAVALGHTA-----VALEDVLSTPCDVFAPC 238 (355)
T ss_dssp CSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEEC
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-ccHHHHHHhcCCEE-----eChHHhhcCccceecHh
Confidence 5889 9999999999999999999987 9888755443 32244556667652 35667766 89999743
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0037 Score=64.48 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=58.6
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh--hhhccCCeE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~--Eav~~ADIV 182 (583)
..++| +++.|||.|. +|.++|+.|... |..|.+..+.. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 45789 9999999987 799999999988 88888776521 1334 788999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
|.+++-.. ++. ...+|+|++|+|++
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999532 222 24579999998874
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.006 Score=62.46 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=59.3
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| +++.|||.|. +|..+|+.|... |..|.+..+. ..++.+.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 35789 9999999987 699999999988 8888776432 2367788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-.. ++. .+.+|+|++|+|++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998422 222 25679999998874
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0063 Score=62.32 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=59.5
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..++| +++.|||.|. .|..+|+.|... |..|.+..+. ..++.+.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 45789 9999999987 699999999988 8888776532 2367788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-... +. .+.+|+|++|+|++
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVNL---LR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTTC---BC--GGGSCTTEEEEECC
T ss_pred CCCCCCc---CC--HHHcCCCeEEEEec
Confidence 9984222 22 35679999998874
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0065 Score=63.11 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=59.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecC-----------C--Cc-CCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEEN-----------G--TL-GDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d-----------~--t~-~d~~Eav 176 (583)
.||||||+|.+|.-+++.|.+. .+++++...+.. ..+...+...|+.... . .+ .+.++..
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~ 76 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML 76 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH
T ss_pred eEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHh
Confidence 5899999999999999998763 145654333322 2233344443321000 0 01 2455666
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++|+||.|+|.....+..+... +.|+.|++.++-
T Consensus 77 ~~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 77 DEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp HTCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTTS
T ss_pred cCCCEEEECCCchhhHHHHHHHH---HcCCEEEEecCC
Confidence 79999999999998887776543 446667776654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0076 Score=61.73 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=43.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G------~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|++|.+++..|... +. ++++.+...++....+.+ +. +.. ..+..+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v----~~~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV----WAGSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEE----EECCHHHhCCCCE
Confidence 6899999999999999999876 53 565554443222222222 11 111 1133678999999
Q ss_pred EEEecc
Q 007951 182 VLLLIS 187 (583)
Q Consensus 182 VILavp 187 (583)
||++.+
T Consensus 71 Vii~ag 76 (310)
T 2xxj_A 71 VVLAAG 76 (310)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.013 Score=60.78 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcCcee-cCC-CcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTE-ENG-TLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G~~~-~d~-t~~d~~Eav~~ADIVILa 185 (583)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+. .+.... .+- ...+..+++++||+||++
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ 83 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVIT 83 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEEC
Confidence 7999999999999999999988 76 66655543322222221 111100 000 022345789999999998
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
..
T Consensus 84 ag 85 (326)
T 3vku_A 84 AG 85 (326)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0084 Score=61.43 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=59.0
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| +++.|||.|. .|.++|+-|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 34788 9999999886 899999999988 8888776431 2367788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-.. ++. .+.+|||++|+|++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998422 222 35679999999874
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.019 Score=58.80 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=44.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCC--ceEEEEecCCcccHHHHHH--cCceec--CCC--cCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTEE--NGT--LGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G--~~ViVg~r~~s~s~~~A~~--~G~~~~--d~t--~~d~~Eav~~ADIV 182 (583)
+||+|||. |.+|.+++..|... | .++++.+... ....+.+ .+.... ..+ ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999999876 6 4666555543 2222222 221100 000 13577889999999
Q ss_pred EEecc
Q 007951 183 LLLIS 187 (583)
Q Consensus 183 ILavp 187 (583)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99863
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0099 Score=61.27 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=43.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-c-ccHHHHH----Hc-----CceecCCCcCCHhhhhccC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-S-RSFAEAR----AA-----GFTEENGTLGDIYETISGS 179 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-s-~s~~~A~----~~-----G~~~~d~t~~d~~Eav~~A 179 (583)
+||+|||.|.||.++|..|... |+ ++++.++.. + +....+. .. .... ...+..+++++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999988 88 776665541 1 1111111 10 1111 012235788999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999986
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0079 Score=62.02 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=53.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC---CcccHHHHHHc----CceecCCCcCCH---hhhh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YETI 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~---~s~s~~~A~~~----G~~~~d~t~~d~---~Eav 176 (583)
++| +++.|+|.|-+|.+++..|.+. |. +|.+..|. .++..+.+.+. +....-....+. .+.+
T Consensus 146 l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l 218 (312)
T 3t4e_A 146 MRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEAL 218 (312)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH
T ss_pred cCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhc
Confidence 567 9999999999999999999988 88 78888887 44444444332 211000002233 4567
Q ss_pred ccCCeEEEeccchH
Q 007951 177 SGSDLVLLLISDAA 190 (583)
Q Consensus 177 ~~ADIVILavpd~a 190 (583)
.++|+||.+||...
T Consensus 219 ~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 219 ASADILTNGTKVGM 232 (312)
T ss_dssp HHCSEEEECSSTTS
T ss_pred cCceEEEECCcCCC
Confidence 88999999999764
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.026 Score=58.64 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCC-------------CcCCHhhhhc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~-------------t~~d~~Eav~ 177 (583)
.||||||+|.||..+++.|.+. .+++++...+. .......+...|+....+ ...+.+++.+
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 4899999999999999998764 14565443333 233345566656542100 0113345556
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
++|+|+.|+|.....+..+.. ++.|..+++.++
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~---~~aG~kvV~~sa 109 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIY---LQLQRNAIFQGG 109 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHH---HHTTCEEEECTT
T ss_pred CCCEEEECCCCchhHHHHHHH---HHcCCeEEEeCC
Confidence 899999999999887777654 345665665544
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0094 Score=64.08 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=51.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcC---CHhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~---d~~Eav~~ADIVIL 184 (583)
++ ++|.|||.|.+|.+++..|.+. |.+|++..|..++..+.+...+ +......+. +..++++++|+||.
T Consensus 2 ~~-k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 AT-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CC-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 35 8999999999999999999987 8888887775433222222222 210000122 23467789999999
Q ss_pred eccchHHHHHH
Q 007951 185 LISDAAQADNY 195 (583)
Q Consensus 185 avpd~a~~~Vl 195 (583)
++|...+..+.
T Consensus 75 ~a~~~~~~~i~ 85 (450)
T 1ff9_A 75 LIPYTFHATVI 85 (450)
T ss_dssp CCC--CHHHHH
T ss_pred CCccccchHHH
Confidence 99987665443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.05 E-value=0.018 Score=59.77 Aligned_cols=71 Identities=23% Similarity=0.226 Sum_probs=44.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcC--ceecC--CCcCCHhhhhccC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISGS 179 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G--~~~~d--~t~~d~~Eav~~A 179 (583)
... +||+|||.|.||.++|..|... |+ ++++.+....+....+. .++ +.... ....+. +.+++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 344 8999999999999999999887 66 66665544322222222 111 11000 002344 468999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+||++.
T Consensus 89 DiVvi~a 95 (331)
T 4aj2_A 89 KLVIITA 95 (331)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999975
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.015 Score=62.94 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=55.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHc-C----------------------ceecCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAA-G----------------------FTEENG 167 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~-G----------------------~~~~d~ 167 (583)
.+|||||+|.||..++..+... .+++++...+.+ ++..+.+.+. | ...
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v--- 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAV--- 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEE---
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceE---
Confidence 5799999999999999888753 156654444443 3333333333 5 111
Q ss_pred CcCCHhhhhc--cCCeEEEeccch-HHHHHHHHHHhcCCCCcEEE
Q 007951 168 TLGDIYETIS--GSDLVLLLISDA-AQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 168 t~~d~~Eav~--~ADIVILavpd~-a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+.|.+++++ +.|+|+++||+. .+.++.. ..|+.|+-|.
T Consensus 96 -~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~---~AL~AGKHVv 136 (446)
T 3upl_A 96 -TDDNDLILSNPLIDVIIDATGIPEVGAETGI---AAIRNGKHLV 136 (446)
T ss_dssp -ESCHHHHHTCTTCCEEEECSCCHHHHHHHHH---HHHHTTCEEE
T ss_pred -ECCHHHHhcCCCCCEEEEcCCChHHHHHHHH---HHHHcCCcEE
Confidence 468888886 589999999864 4444443 3456677655
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.034 Score=57.95 Aligned_cols=92 Identities=21% Similarity=0.137 Sum_probs=58.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHH--------------------HcCceecCCCcC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEAR--------------------AAGFTEENGTLG 170 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~--------------------~~G~~~~d~t~~ 170 (583)
.||||+|+|.+|..+++.|... .+++++...+...... ..++ ..++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 4899999999999999998764 1356543333221111 1111 222222 12
Q ss_pred CHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 171 d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+..+...++|+|+.|+|.....+..+ ..+++.|+.|+++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34455578999999999877665554 4678889887776653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0023 Score=62.55 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=54.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILavpd~a 190 (583)
++|+|||+|.+|.+++..+... . |++++...+.++..... ...|+...+ ..++.+.++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~~--~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIEH--VDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEEE--GGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeeec--HHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999864322 2 67766555554432221 112433211 456777776 5899999999998
Q ss_pred HHHHHHHHHh
Q 007951 191 QADNYEKIFS 200 (583)
Q Consensus 191 ~~~Vl~eI~~ 200 (583)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0098 Score=60.98 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=59.0
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
..++| +++.|||.|. .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 35788 9999999996 599999999987 8888776422 2467888999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++-... +. ...+|+|++|+|++
T Consensus 209 Avg~p~l---I~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPGF---IP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred CCCCcCc---CC--HHHcCCCcEEEEcc
Confidence 9994432 22 23479999999885
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.022 Score=56.27 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=56.7
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~~---- 160 (583)
.+.|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....+...
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 466788 9999999999999999999998 87 666665543 3332222221
Q ss_pred -Ccee--cCCCcC--CHhhhhccCCeEEEeccchHHHHHHHHH
Q 007951 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (583)
Q Consensus 161 -G~~~--~d~t~~--d~~Eav~~ADIVILavpd~a~~~Vl~eI 198 (583)
++.. ...... +..+.++++|+||.++++......+.+.
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 2211 000111 2346788999999999876655555554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.014 Score=60.22 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=59.0
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|+ .|..+|+-|... |..|.+..+. ..++.+.+++||+||.+
T Consensus 162 ~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~A 215 (301)
T 1a4i_A 162 PIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVVA 215 (301)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEEC
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEEC
Confidence 5788 9999999996 699999999987 8887776421 24678899999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-... +. ...+|+|++|+|++
T Consensus 216 vg~p~~---I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 216 TGQPEM---VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp CCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCccc---CC--HHHcCCCcEEEEcc
Confidence 996432 22 24578999999885
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.009 Score=61.15 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=90.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s---~~~A~-----~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
.||+|+| +|.||..+++.+.+. .+++++...+..... .+... ..|+.. ..|+++++.++|+|
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI 92 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence 5899999 999999999998864 166765555543211 01111 134443 46889999999999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhH--HhHhcccccc--CC
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR--~lf~~G~e~~--G~ 257 (583)
|-.++|....+.+.... +.|. +|+=+.|++-...+. ....-+.+.+ ...||..--+.- .+-+.-.... ++
T Consensus 93 IDFT~p~a~~~~~~~~l---~~Gv~vViGTTG~~~e~~~~-L~~aa~~~~~-~~a~N~SiGv~ll~~l~~~aa~~l~~~~ 167 (288)
T 3ijp_A 93 LDFSQPQASVLYANYAA---QKSLIHIIGTTGFSKTEEAQ-IADFAKYTTI-VKSGNMSLGVNLLANLVKRAAKALDDDF 167 (288)
T ss_dssp EECSCHHHHHHHHHHHH---HHTCEEEECCCCCCHHHHHH-HHHHHTTSEE-EECSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred EEcCCHHHHHHHHHHHH---HcCCCEEEECCCCCHHHHHH-HHHHhCcCCE-EEECCCcHHHHHHHHHHHHHHHhcCCCC
Confidence 99999988766665433 3454 444467875322211 0011234555 578887655411 0000000000 11
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 007951 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (583)
Q Consensus 258 Gv~aliAv~q----d-~sgeale~a~ala~aIG~ 286 (583)
-+-. +-.|. | +||.++.+++.+.++.|.
T Consensus 168 dieI-iE~HH~~K~DaPSGTA~~la~~i~~~~~~ 200 (288)
T 3ijp_A 168 DIEI-YEMHHANKVDSPSGTALLLGQAAAEGRNI 200 (288)
T ss_dssp EEEE-EEEECTTCCCSSCHHHHHHHHHHHHHTTS
T ss_pred CEEE-EEccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 1222 22233 2 678888888888777764
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.018 Score=59.75 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCEEEEEccchhHHHHHHHHHHh---hhhhcCCceEEEEecCCccc-----HH--HHHHcCceecCCCc--CCHhhhhc-
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARAAGFTEENGTL--GDIYETIS- 177 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrds---l~~~g~G~~ViVg~r~~s~s-----~~--~A~~~G~~~~d~t~--~d~~Eav~- 177 (583)
+.+|||||+|.+|..++..|.+. |+..|.+++++...+.+... .. .+...+... .. .|.+++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~---~~~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGM---LRDDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSS---CSBCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcc---ccCCCCHHHHhcC
Confidence 36899999999999999998764 22223366654333332211 11 111111110 02 27888875
Q ss_pred -cCCeEEEeccchHH-HHHHHHHHhcCCCCcEEEEe
Q 007951 178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 -~ADIVILavpd~a~-~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.|+|+.++|+..+ .+.++-+...|+.|+-|+..
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999999875 22333455667788866544
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0062 Score=61.13 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=51.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc--------eecCCCcCCHhhhhccC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISGS 179 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~--------~~~d~t~~d~~Eav~~A 179 (583)
++| +++.|+|.|-+|.+++..|.+. | +|++.+|+.++..+.+.+.+. .. + +.+..+.+.++
T Consensus 126 l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-d--~~~~~~~~~~~ 194 (287)
T 1nvt_A 126 VKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV-K--FSGLDVDLDGV 194 (287)
T ss_dssp CCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE-E--EECTTCCCTTC
T ss_pred cCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE-E--EeeHHHhhCCC
Confidence 578 9999999999999999999988 8 988887765443344333211 10 0 22335667789
Q ss_pred CeEEEeccchHH
Q 007951 180 DLVLLLISDAAQ 191 (583)
Q Consensus 180 DIVILavpd~a~ 191 (583)
|+||.+++....
T Consensus 195 DilVn~ag~~~~ 206 (287)
T 1nvt_A 195 DIIINATPIGMY 206 (287)
T ss_dssp CEEEECSCTTCT
T ss_pred CEEEECCCCCCC
Confidence 999999986543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.013 Score=61.83 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=61.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCC---ceEEEEecCCcccHHHHHHcC------ce--ecCCC-cCCHhhhhcc
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FT--EENGT-LGDIYETISG 178 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G---~~ViVg~r~~s~s~~~A~~~G------~~--~~d~t-~~d~~Eav~~ 178 (583)
+++|+|||.|.+|.+++..|.+. | .+|++..|..++..+.+.+.+ +. ..|-+ ..+..+++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 37899999999999999999887 6 277777776555444444321 21 10100 1234566776
Q ss_pred --CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 179 --SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 179 --ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|+||.++++.....+.+.. ++.|..+++.++.
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a~---l~~g~~vvD~a~~ 109 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEAC---LRTGVPYLDTANY 109 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHHH---HHHTCCEEESSCC
T ss_pred hCCCEEEECCCcccChHHHHHH---HHhCCCEEEecCC
Confidence 89999999998776666543 2345556665543
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0078 Score=64.92 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=66.1
Q ss_pred hhcCCCEEEEEccc----hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 007951 107 AFNGINQIGVIGWG----SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 107 ~l~gikkIgIIG~G----~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
.|+- ++|+|||.+ ..|..+.++|++. | +..| +........ -.|... ..++.|+-...|++
T Consensus 5 l~~p-~siAVvGas~~~~~~g~~v~~~l~~~----g-~~~v-~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dla 68 (457)
T 2csu_A 5 FFNP-KGIAVIGASNDPKKLGYEVFKNLKEY----K-KGKV-YPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLA 68 (457)
T ss_dssp TTSC-SEEEEETCCSCTTSHHHHHHHHHTTC----C-SSEE-EEECSSCSE-----ETTEEC----BSSTTSCSSCCSEE
T ss_pred hcCC-CeEEEECcCCCCCchHHHHHHHHHHc----C-CCEE-EEECCCCCe-----ECCEec----cCCHHHcCCCCCEE
Confidence 3454 899999998 7899999999876 2 2444 333332221 147664 56777777789999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++++|+....+++++.... .-..+|.++.||.
T Consensus 69 vi~vp~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 69 IIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp EECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred EEecCHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 9999999999999986543 2344778898984
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.029 Score=50.25 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=72.4
Q ss_pred CEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|+|||. +..|..+.++|++. |++|+-.+.+... -.|... ..++.|+=. -|++++++|
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~p 67 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYIN 67 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECSC
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEeC
Confidence 68999997 56899999999998 8876554443221 146553 445555545 899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhh
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~v 244 (583)
++...+++++.... ... .|++..|+.-..+.+ +.-..+++++ ||+.+-..
T Consensus 68 ~~~v~~~v~e~~~~-g~k-~v~~~~G~~~~e~~~--~a~~~Girvv---~nC~gv~l 117 (122)
T 3ff4_A 68 PQNQLSEYNYILSL-KPK-RVIFNPGTENEELEE--ILSENGIEPV---IGCTLVML 117 (122)
T ss_dssp HHHHGGGHHHHHHH-CCS-EEEECTTCCCHHHHH--HHHHTTCEEE---ESCHHHHH
T ss_pred HHHHHHHHHHHHhc-CCC-EEEECCCCChHHHHH--HHHHcCCeEE---CCcCeEEe
Confidence 99999999986543 223 367899984221111 0112467776 37776553
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.018 Score=57.97 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=53.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
++|++||+|+||..+++. + +++++..++ ++.. +.|+.. +.|.++++.++|+|+-|.++.+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999887 2 444433333 2211 115543 56788888899999999987755
Q ss_pred HHHHHHHHhcCCCCcEEE-EecC
Q 007951 192 ADNYEKIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~-~a~G 213 (583)
.+.+ .+.|+.|.-|+ .+-|
T Consensus 74 ~e~~---~~iL~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYS---LQILKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---HHHTTSSSEEEECCGG
T ss_pred HHHH---HHHHHCCCCEEEcChh
Confidence 5544 45577887544 4443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.036 Score=60.41 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=43.3
Q ss_pred CEEEEEccchhH--HHHHHHHHHhhhhhcC-CceEEEEecCCcccHHHH----H----HcCceecCCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEA----R----AAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG--~A~A~nLrdsl~~~g~-G~~ViVg~r~~s~s~~~A----~----~~G~~~~d~t~~d~~Eav~~AD 180 (583)
+||+|||.|+|| .+++..|... .+. +.+|++.++..++ .+.+ . ..+....-....|..+++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 799999999985 5556677532 112 5577766654332 1111 1 1111100001357778999999
Q ss_pred eEEEeccc
Q 007951 181 LVLLLISD 188 (583)
Q Consensus 181 IVILavpd 188 (583)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=60.15 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccch-----hHHHHHH
Q 007951 451 AGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRF-----DYILTQQ 525 (583)
Q Consensus 451 ~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f-----~~~~~~~ 525 (583)
.|.+-.++-+.+|.|.+.|.++.+++.|++.|. ..+.++|...|+..|...+|.++.++.+-+.|+. ... .++
T Consensus 199 ~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~-~~~~~~~~~gg~~~~r~a~s~p~~~~d~~~~~~~~~~~~~~~-l~~ 276 (338)
T 1np3_A 199 CGGCVELVKAGFETLVEAGYAPEMAYFECLHEL-KLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAA-MRN 276 (338)
T ss_dssp THHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCHHHHHH-HHH
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH-HHHHHHHHhcCHHHHHHhcCCHHHHhhhhcCCccccHHHHHH-HHH
Confidence 355566666778999999999999998888663 5667888888988888999999999999988762 222 367
Q ss_pred HHhhhccCCc-------------cchhhHHhhhcChHHHHHHHHhccCCcce
Q 007951 526 ALVAVDNDAP-------------INGDLISNFLSDPVHGAIEVCAQLRPTVD 564 (583)
Q Consensus 526 ~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (583)
++..+++|.. ....+..+.++||+++.=+.-..++|-.+
T Consensus 277 ~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~r~~~~~~~ 328 (338)
T 1np3_A 277 ALKRIQDGEYAKMFITEGAANYPSMTAYRRNNAAHPIEQIGEKLRAMMPWIA 328 (338)
T ss_dssp HHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHSHHHHHHHHHHTTCTTC-
T ss_pred HHHHHhCCHHHHHHHHHHhcccHHHHHHHHHHhCCcHHHHHHHHHHhCcccc
Confidence 7777777632 23456667789999998888888888764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.034 Score=58.05 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=46.1
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcC-ceecC-CCcCCHhhhhcc
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG-FTEEN-GTLGDIYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G-~~~~d-~t~~d~~Eav~~ 178 (583)
+++.+ +||+|||. |.+|.++|..+... |+ ++++.+....+....+. ..+ +.... ....+..+++++
T Consensus 4 ~~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d 76 (343)
T 3fi9_A 4 SYLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD 76 (343)
T ss_dssp CCSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC
Confidence 44556 89999998 99999999988877 64 66554443222121111 111 11000 002467788999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
||+||++.
T Consensus 77 ADvVvita 84 (343)
T 3fi9_A 77 AKYIVSSG 84 (343)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999985
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.043 Score=58.41 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=63.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC----Cccc--------HHHHHHcCceecCCCcCCHh
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~----~s~s--------~~~A~~~G~~~~d~t~~d~~ 173 (583)
-++. .||.|+|.|.+|.+.|+.|... |. +|++.+++ ..+. ...|.+... .....++.
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~---~~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc---cCchhhHH
Confidence 4566 8999999999999999999987 87 78888776 3321 344444321 11246799
Q ss_pred hhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+++++|++|=++.|..+ -+++...|+++.+|...
T Consensus 259 eav~~ADVlIG~Sap~l~---t~emVk~Ma~~pIIfal 293 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNIL---KPEWIKKMSRKPVIFAL 293 (388)
T ss_dssp HHHTTCSEEEECSCSSCS---CHHHHTTSCSSCEEEEC
T ss_pred HHHccCCEEEEeCCCCcc---CHHHHHhcCCCCEEEEc
Confidence 999999999988765322 13444557788866433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0091 Score=60.24 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=86.6
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHHHc-----CceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAA-----GFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s---~~~A~~~-----G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|+|+ |.||..++..+... .+++++...+.+... .+..... |+.. ..+.++++.++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999999 99999999988754 166665444432211 0111111 2221 34567788899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhH--HhHhcccccc--CC
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR--~lf~~G~e~~--G~ 257 (583)
|-+++|....+++.... +.|.-+ +=..|++....+. .....+.+.+ ...||+.-...- .+.+.--... ++
T Consensus 77 IDft~p~~~~~~~~~a~---~~G~~vVigTtG~~~e~~~~-L~~~a~~~~v-v~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCR---QHGKGMVIGTTGFDEAGKQA-IRDAAADIAI-VFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHH---HTTCEEEECCCCCCHHHHHH-HHHHTTTSCE-EECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHH---hCCCCEEEECCCCCHHHHHH-HHHhcCCCCE-EEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 98888887766665433 345534 3355776432211 1111234554 467876543310 0000000000 11
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 007951 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (583)
Q Consensus 258 Gv~aliAv~q----d-~sgeale~a~ala~aIG~ 286 (583)
-+-. +-.|. | ++|.++.+++.++...|.
T Consensus 152 diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2222 22232 3 688888888888887774
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.026 Score=60.79 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=51.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCceecCCCcCC---Hhh-hhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYE-TISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d---~~E-av~~ADIVILav 186 (583)
|+|-|+|+|..|..+|+.|... |++|++-+.. +...+. ..+.++..-.+...+ +.+ -+++||+++.+|
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKD-GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESC-HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999887 9988776554 444444 445565321111222 223 278999999999
Q ss_pred cchHHH
Q 007951 187 SDAAQA 192 (583)
Q Consensus 187 pd~a~~ 192 (583)
+++..-
T Consensus 77 ~~De~N 82 (461)
T 4g65_A 77 NTDETN 82 (461)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 887553
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.044 Score=56.96 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecC---CcccHHHHHHcCcee--------cCCCc--CCHhhhhc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK---GSRSFAEARAAGFTE--------ENGTL--GDIYETIS 177 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~---~s~s~~~A~~~G~~~--------~d~t~--~d~~Eav~ 177 (583)
+||+||| .|.+|..+++.|.+. .+++++...++ ..+... ...++.. .+-.+ .+.++..+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYK--DACYWFQDRDIPENIKDMVVIPTDPKHEEF 81 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHH--HHSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHH--HhcccccccccccCceeeEEEeCCHHHHhc
Confidence 5899999 899999999988765 13565444332 112222 2222110 00001 14455556
Q ss_pred -cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 178 -~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|+||+|+|.....++.+.+. +.|..|++.+|.
T Consensus 82 ~~~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 82 EDVDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCCCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 8999999999988887777654 467778888764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.05 Score=53.58 Aligned_cols=91 Identities=10% Similarity=0.131 Sum_probs=60.5
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCCHhhhhc
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.-|+.. -.++| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+.++....+. .. .+-+.
T Consensus 21 ~~~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~-~~-~~dL~ 90 (223)
T 3dfz_A 21 HMYTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKK-VG-EEDLL 90 (223)
T ss_dssp -CCEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSC-CC-GGGSS
T ss_pred CccccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECC-CC-HhHhC
Confidence 346654 45889 9999999999999999999998 888877665433323 33333334321111 22 34578
Q ss_pred cCCeEEEeccchHHHHHHHHHH
Q 007951 178 GSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~ 199 (583)
++|+||.+|.+......+.+.+
T Consensus 91 ~adLVIaAT~d~~~N~~I~~~a 112 (223)
T 3dfz_A 91 NVFFIVVATNDQAVNKFVKQHI 112 (223)
T ss_dssp SCSEEEECCCCTHHHHHHHHHS
T ss_pred CCCEEEECCCCHHHHHHHHHHH
Confidence 8999999998876655554443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.044 Score=56.72 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=56.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhh-hhhcCCceEEEEecCCcc---------cH-HHHHHcCceecCCCcCCHhhhhc--c
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR---------SF-AEARAAGFTEENGTLGDIYETIS--G 178 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl-~~~g~G~~ViVg~r~~s~---------s~-~~A~~~G~~~~d~t~~d~~Eav~--~ 178 (583)
.+|+|||+|.+|..+++.|.+.- ...|.+++++...+.+.. .+ +.+.+.|... +... +..+.+. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence 47999999999999999998630 111224454333333221 12 2333445221 1012 5566664 5
Q ss_pred CCeEEEeccchHH-HHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~-~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+|+.|+|+..+ ...++.+...|+.|+-|+.+
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 8999999998755 33344455667778866543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.055 Score=51.30 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=51.4
Q ss_pred hhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCc-e--ecCCCcCCHhhhhccCC
Q 007951 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-T--EENGTLGDIYETISGSD 180 (583)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~-~--~~d~t~~d~~Eav~~AD 180 (583)
...|+| |+|.|+|. |-+|.++++.|.+. |++|++..|..++ .+.....++ . ..|-+ .+..+++.+.|
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D 86 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID 86 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence 456889 99999997 99999999999998 9998887776544 333334455 2 11212 45567888999
Q ss_pred eEEEeccc
Q 007951 181 LVLLLISD 188 (583)
Q Consensus 181 IVILavpd 188 (583)
+||.+...
T Consensus 87 ~vi~~ag~ 94 (236)
T 3e8x_A 87 AVVFAAGS 94 (236)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99988764
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.03 Score=57.17 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccchh-HHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~m-G~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| +++.|||.|.+ |..+|+.|... |.|..|.+..+. ..++.+.+++||+||.+
T Consensus 155 ~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~A 210 (281)
T 2c2x_A 155 SIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVAA 210 (281)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEEC
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEEC
Confidence 5788 99999999976 99999988754 113466665432 24678899999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++-... +. .+.+|+|++|+|++
T Consensus 211 vg~p~~---I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 211 VGVAHL---LT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp SCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCcc---cC--HHHcCCCcEEEEcc
Confidence 984332 22 24578999988874
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.047 Score=55.44 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=58.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCH---hhh-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~---~Ea-v~~ADIVILavp 187 (583)
++|.|+|+|..|..+++.|.+. |+ +++. +.+++..+ +.+.|+..-.+...+. .++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999887 87 6554 45455555 6666764321222232 234 788999999999
Q ss_pred chHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
++...-..-..+..+.+. .++.-+
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 875433333444445454 344433
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.04 Score=57.64 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=57.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee----cCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~----~d~t~~d~~Eav~~ADIVILav 186 (583)
+||+|+| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+ ++..+++|+||+|+
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~at 90 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-----PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCL 90 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-----SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-----CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcC
Confidence 6899999 899999999999875 13465544443222222222222110 0001122 44556899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|.....+.... + +.|..|++.++
T Consensus 91 p~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 91 PHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CchhHHHHHHH---H-hCCCEEEECCc
Confidence 98887665543 3 67888888776
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.16 Score=49.24 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=48.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
|+|.|+|.|.+|..++..|.+. |++|++..|..++ .......++........+.+ ++++|+||.+..+
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred CcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 8999999999999999999998 9998777776443 33444455542111133333 7889999998754
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.086 Score=56.94 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=55.7
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hh-hhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~-~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILa 185 (583)
.+|||||+|.+|..++..|.+. +. ..|.+++++...+.+....+.. ..+... ..|.++++. +.|+|+.+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~ 85 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVEL 85 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEEC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEc
Confidence 3799999999999999887642 11 1233556544344332222111 123332 467888886 57999999
Q ss_pred ccc-hHHHHHHHHHHhcCCCCcEEEE
Q 007951 186 ISD-AAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 186 vpd-~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+|+ ..+.+++.+ .|+.|+-|+.
T Consensus 86 tp~~~~h~~~~~~---AL~aGKhVvt 108 (444)
T 3mtj_A 86 IGGLEPARELVMQ---AIANGKHVVT 108 (444)
T ss_dssp CCSSTTHHHHHHH---HHHTTCEEEE
T ss_pred CCCchHHHHHHHH---HHHcCCEEEE
Confidence 996 677666543 3456765543
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.057 Score=56.13 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=56.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~--~d~t~~d~~Eav~~ADIVILavpd 188 (583)
+||+||| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+.++ +.++|+||+|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999998865 13465544443221111111111100 0111233333 4789999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
....++.+.. ++.|..|++.++
T Consensus 79 ~~s~~~a~~~---~~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRY---SALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHH---HTTCSEEEECSS
T ss_pred HHHHHHHHHH---HHCCCEEEEcCc
Confidence 8887776654 356887887766
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=53.34 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=43.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCC--ceEEEEecCCcccHHHH--HHcC-c--eecCC-CcCCHhhhhccCCeE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEA--RAAG-F--TEENG-TLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G--~~ViVg~r~~s~s~~~A--~~~G-~--~~~d~-t~~d~~Eav~~ADIV 182 (583)
+||+||| .|.+|.+++..|.+. | .+|++.+...+ ...+ .... . ....- ...+..+++++||+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999877 6 46655443332 2222 1111 1 11000 012457889999999
Q ss_pred EEecc
Q 007951 183 LLLIS 187 (583)
Q Consensus 183 ILavp 187 (583)
|++.+
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99875
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.035 Score=56.75 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc----CceecCC--CcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG--TLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~----G~~~~d~--t~~d~~Eav~~ADIVI 183 (583)
|||+|||.|.+|.++|..|..+ ++ ++++.+....+..-.|... -+..... ...+..+.+++||+|+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv 74 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV 74 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence 7999999999999999999887 65 5555444332222222211 1110000 0122246789999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 75 itA 77 (294)
T 2x0j_A 75 VTA 77 (294)
T ss_dssp ECC
T ss_pred Eec
Confidence 964
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.12 Score=47.69 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=46.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC-HhhhhccCCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~~Eav~~ADIVILavpd 188 (583)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..... .++..-...+.+ ..+++.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 6899999 599999999999998 999888777644322211 343311000111 11678899999998754
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.065 Score=57.83 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=63.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEe----cC----Cccc---HH-----HHHHcCceecCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEENG 167 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~----r~----~s~s---~~-----~A~~~G~~~~d~ 167 (583)
.+++ ++|.|+|.|..|.+++..|.+. |. +|++.+ |+ .... .. .+...+.. .
T Consensus 183 ~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~---~ 252 (439)
T 2dvm_A 183 KISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE---N 252 (439)
T ss_dssp CTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---C
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---c
Confidence 4677 8999999999999999999988 87 788888 65 2111 10 11111110 0
Q ss_pred CcCCHhhhhccCCeEEEeccc--hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 168 TLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 168 t~~d~~Eav~~ADIVILavpd--~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
...+..|+++++|+||-++|. ....+ +....|+++.+|.+.
T Consensus 253 ~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 253 IEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred ccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 134678899999999999997 55432 334457788888777
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.12 Score=53.89 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=57.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCC---c--ccHHHHH--HcCceecCCCcC---CHhhhhccCC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~---s--~s~~~A~--~~G~~~~d~t~~---d~~Eav~~AD 180 (583)
+||+||| .|.+|..+.+.|.+. ..+++....... + +.....- -.|.. +-.+. +.++.++++|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~--~~~v~~~~~~~~~~~~~D 77 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIV--ELPLQPMSDISEFSPGVD 77 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTC--CCBEEEESSGGGTCTTCS
T ss_pred eEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCcc--ceeEeccCCHHHHhcCCC
Confidence 6899999 599999999988874 145554433222 1 2222110 01221 00111 3444448999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
+||+|+|...-.++.+++. +.|..|+|.++
T Consensus 78 vvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 78 VVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp EEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred EEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 9999999988877777653 46888887766
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.038 Score=57.91 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.1
Q ss_pred CEEEEEccchhHHHHHHHHHHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (583)
.+|||||+|.+|..++..|++.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHHhc
Confidence 4799999999999999999875
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.12 Score=55.68 Aligned_cols=75 Identities=21% Similarity=0.108 Sum_probs=44.5
Q ss_pred CEEEEEccchh-HHHHHHHHHH--hhhhhcC-CceEEEEecCC--cccH---HHHH----HcCceecCCCcCCHhhhhcc
Q 007951 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSF---AEAR----AAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 112 kkIgIIG~G~m-G~A~A~nLrd--sl~~~g~-G~~ViVg~r~~--s~s~---~~A~----~~G~~~~d~t~~d~~Eav~~ 178 (583)
+||+|||.|+. |.+++..|.. . +. +.+|++.++.. ++.. +.+. ..+....-....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 7787777765 3 11 22565555543 2211 1111 12221000013577789999
Q ss_pred CCeEEEeccchH
Q 007951 179 SDLVLLLISDAA 190 (583)
Q Consensus 179 ADIVILavpd~a 190 (583)
||+||++++...
T Consensus 84 AD~VVitagv~~ 95 (450)
T 1s6y_A 84 ADFVTTQFRVGG 95 (450)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEEcCCCCC
Confidence 999999999643
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.14 Score=52.33 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=49.4
Q ss_pred CCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEe--
Q 007951 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL-- 185 (583)
Q Consensus 111 ikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILa-- 185 (583)
+|+|.|||.|-+|.+ +|+.|++. |++|.+.++... ...+..++.|+....+ .+.++.. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence 389999999999996 99999998 999888776542 2344556678764211 2344444 479999984
Q ss_pred ccc
Q 007951 186 ISD 188 (583)
Q Consensus 186 vpd 188 (583)
+|+
T Consensus 76 i~~ 78 (326)
T 3eag_A 76 AKR 78 (326)
T ss_dssp CCT
T ss_pred cCC
Confidence 554
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.16 Score=50.12 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=54.7
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHc----
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~~A~~~---- 160 (583)
.+.|++ ++|.|||+|-+|..++++|..+ |+ ++.+.++.. .+....+...
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 555543321 1222111111
Q ss_pred -Cceec--CCCc--CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~~--d~t~--~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
++... .... .+..+.++++|+||.++........+.+..
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 22110 0001 123467788999999998766555665543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.095 Score=55.85 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=51.6
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC---cccHHHHHHcCceecCCCcCCHhhhhcc-CCeE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~---s~s~~~A~~~G~~~~d~t~~d~~Eav~~-ADIV 182 (583)
.++| ++|.|||.|..|.+.|+-|++. |++|.+.++.. +...+..++.|+...-+ .+..+.+.+ +|+|
T Consensus 6 ~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~v 76 (451)
T 3lk7_A 6 TFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCYM 76 (451)
T ss_dssp TTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEEE
T ss_pred hcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCEE
Confidence 3678 9999999999999999999998 99988777643 22334555678764211 123345566 8999
Q ss_pred EEe--ccc
Q 007951 183 LLL--ISD 188 (583)
Q Consensus 183 ILa--vpd 188 (583)
|+. +|+
T Consensus 77 v~spgi~~ 84 (451)
T 3lk7_A 77 IKNPGIPY 84 (451)
T ss_dssp EECTTSCT
T ss_pred EECCcCCC
Confidence 985 554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.16 Score=51.62 Aligned_cols=66 Identities=24% Similarity=0.262 Sum_probs=40.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--eEEEEecC-CcccH-HHHHH--c------CceecCCCcCCHhhhhcc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSF-AEARA--A------GFTEENGTLGDIYETISG 178 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~-~s~s~-~~A~~--~------G~~~~d~t~~d~~Eav~~ 178 (583)
+||+||| .|.+|.+++..|... ++ ++.+.+.. +.... ..+.. + .+.. ..+..+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v----~~~~~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV----RQGGYEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE----EECCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEE----EeCCHHHhCC
Confidence 5899999 999999999999876 54 45544441 22111 11111 0 1111 0123678999
Q ss_pred CCeEEEecc
Q 007951 179 SDLVLLLIS 187 (583)
Q Consensus 179 ADIVILavp 187 (583)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999865
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.12 Score=53.59 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEec-CCcccHHHHHHcCce--------ecCCCcC--CHhhhhccC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTLG--DIYETISGS 179 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~~s~s~~~A~~~G~~--------~~d~t~~--d~~Eav~~A 179 (583)
.||+||| .|.+|.-+.+.|.+. ..++++...+ ..+........+++. ..+-.+. +.++ +.++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988764 1346544432 111111122222211 0000011 3333 4789
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|+||+|+|.....++.+... +.|..|++.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 99999999988877776543 45777777765
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.32 Score=50.69 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=52.1
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.|+| .||++||=| +++.|++..+..- |.++.+..... +.-.+ .|.+.|.... .+.+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence 5788 899999986 9999999999887 88887765432 11222 3346773210 157899999
Q ss_pred ccCCeEEEecc
Q 007951 177 SGSDLVLLLIS 187 (583)
Q Consensus 177 ~~ADIVILavp 187 (583)
++||+|+..+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999998544
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.24 Score=49.24 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=53.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeccch
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILavpd~ 189 (583)
+||+|+|+ |.||..++..+.+. .+++++...+.+ .++++++. ++|+||=+++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998754 167766555432 12334443 789999888888
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecCchhh
Q 007951 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~ 217 (583)
...+.+.... +.|. +|+-+.|++-.
T Consensus 57 a~~~~~~~a~---~~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 57 VVMGNLEFLI---DNGIHAVVGTTGFTAE 82 (245)
T ss_dssp THHHHHHHHH---HTTCEEEECCCCCCHH
T ss_pred HHHHHHHHHH---HcCCCEEEcCCCCCHH
Confidence 8777666533 3344 44446677643
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.33 Score=50.62 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=51.9
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.|+| .||++||=| +++.|++..+..- |.++.+..... +.-.+ .|.+.|.... .+.+++|++
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAV 222 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHT
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHh
Confidence 5788 899999986 9999999999887 88887765432 11222 3336673210 157899999
Q ss_pred ccCCeEEEecc
Q 007951 177 SGSDLVLLLIS 187 (583)
Q Consensus 177 ~~ADIVILavp 187 (583)
+++|+|+..+=
T Consensus 223 ~~aDvvytd~w 233 (335)
T 1dxh_A 223 KGVDFVHTDVW 233 (335)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEeCCc
Confidence 99999998543
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.23 Score=51.47 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=55.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHHHc----C------------ceecCC------
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAA----G------------FTEENG------ 167 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~~~----G------------~~~~d~------ 167 (583)
.||||+|+|.+|.-+++.|.+. .+++++...+. +........++ | +.. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 4899999999999999998765 15676544442 32222222221 1 000 00
Q ss_pred CcCCHhhhh---ccCCeEEEeccchHHHHHHHHHHhcCCCCc-EEEEecC
Q 007951 168 TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (583)
Q Consensus 168 t~~d~~Eav---~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G 213 (583)
...+++++- .++|+||.|+|.....+... .+++.|+ .|.+++.
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSap 124 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISAP 124 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESSC
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEeccC
Confidence 012444431 47899999999888876554 4567785 4555543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.19 Score=54.67 Aligned_cols=77 Identities=21% Similarity=0.099 Sum_probs=43.7
Q ss_pred CEEEEEccchh-HHHHHHHHHHhhhhhcC-CceEEEEecCCcccH---HHHH----HcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~m-G~A~A~nLrdsl~~~g~-G~~ViVg~r~~s~s~---~~A~----~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|||.|+. |.+++..|.... .+. +.+|++.++..++.. +.+. ..+....-....|..+++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 69999999998 665665665430 012 335666555432211 1111 111110000135778899999999
Q ss_pred EEeccchH
Q 007951 183 LLLISDAA 190 (583)
Q Consensus 183 ILavpd~a 190 (583)
|+++|...
T Consensus 107 Viaag~~~ 114 (472)
T 1u8x_X 107 MAHIRVGK 114 (472)
T ss_dssp EECCCTTH
T ss_pred EEcCCCcc
Confidence 99998744
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.41 Score=49.48 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhhc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.|+| .||++||= +++..|++..+..- |.++.+..... +.-.+ .|.+.|.... .+.+++|+++
T Consensus 152 ~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav~ 222 (315)
T 1pvv_A 152 TIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE--LLHDPVKAVK 222 (315)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHTT
T ss_pred CcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEeCHHHHhC
Confidence 4788 89999997 79999999999887 88887765542 11222 3336673210 1578999999
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+|+..+
T Consensus 223 ~aDvvy~~~ 231 (315)
T 1pvv_A 223 DADVIYTDV 231 (315)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEEcc
Confidence 999999854
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.09 Score=54.59 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=52.0
Q ss_pred CEEEEEccchhHHHHHHHHHHh---hhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds---l~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
.+|||||+|.+|..++..|.+. +.+.|.+++++...+.+.. ++ .++.. .....|.++++ +.|+|+.|+|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 4799999999999999998875 1111123444333332211 11 12211 11145677778 99999999997
Q ss_pred hHH-HHHHHHHHhcCCCCcEEEE
Q 007951 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 189 ~a~-~~Vl~eI~~~Lk~GaiL~~ 210 (583)
..+ .+... ..|+.|+-|+.
T Consensus 77 ~~~a~~~~~---~AL~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVL---PALEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHH---HHHHTTCCEEE
T ss_pred cHHHHHHHH---HHHHcCCeEEE
Confidence 643 33333 34556775544
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.15 Score=54.55 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=48.4
Q ss_pred cCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+++|.|||+|-.|.+ +|+-|++. |++|.+.+...+...+...+.|+....+ .+. +.++++|+||+.
T Consensus 16 ~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 16 RRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIG--HAE-EHIEGASVVVVS 84 (475)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEES--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 44589999999999997 99999988 9998776665444334455678764211 122 456789999884
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.18 Score=51.66 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=43.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC----cc-cHHHH--HHcC---ceecCCCcCCHh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEA--RAAG---FTEENGTLGDIY 173 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~----s~-s~~~A--~~~G---~~~~d~t~~d~~ 173 (583)
+||+|||. |.+|.+++..|... |+ ++++ .+.+ +. ....+ ...+ +...-....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 69999997 99999999999876 54 5555 4443 21 11111 1222 110000025678
Q ss_pred hhhccCCeEEEecc
Q 007951 174 ETISGSDLVLLLIS 187 (583)
Q Consensus 174 Eav~~ADIVILavp 187 (583)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 89999999998753
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.097 Score=52.15 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=49.4
Q ss_pred hcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cc--eecCCCcCC---Hhhhhc
Q 007951 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEENGTLGD---IYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~--~~~d~t~~d---~~Eav~ 177 (583)
++| +++.|+| .|-+|.+++..|.+. |.+|++..|..++..+.+.+. ++ ...| +.+ ..++++
T Consensus 117 l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D--~~~~~~~~~~~~ 187 (287)
T 1lu9_A 117 VKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE--TADDASRAEAVK 187 (287)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE--CCSHHHHHHHTT
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec--CCCHHHHHHHHH
Confidence 578 9999999 999999999999998 988888777644433333221 21 1101 222 345677
Q ss_pred cCCeEEEeccc
Q 007951 178 GSDLVLLLISD 188 (583)
Q Consensus 178 ~ADIVILavpd 188 (583)
+.|+||.+++.
T Consensus 188 ~~DvlVn~ag~ 198 (287)
T 1lu9_A 188 GAHFVFTAGAI 198 (287)
T ss_dssp TCSEEEECCCT
T ss_pred hCCEEEECCCc
Confidence 78888888864
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.31 Score=50.01 Aligned_cols=72 Identities=21% Similarity=0.134 Sum_probs=41.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cC-c--eecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G-~--~~~d~t~~d~~Eav~~ADIVILa 185 (583)
|||+||| .|.+|.+++..|.... +...++++.+.. ++....+.+ +. . ....-...+..+++++||+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~-~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSS-TTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecC-CCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6899999 8999999999987530 112355544443 222222221 11 1 11000002456789999999998
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
..
T Consensus 77 ag 78 (312)
T 3hhp_A 77 AG 78 (312)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.19 Score=54.36 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe--c
Q 007951 110 GINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--I 186 (583)
Q Consensus 110 gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa--v 186 (583)
.+++|.|||.|-.|.+ +|+-|++. |++|.+.+...+...+..++.|+... .....+.+.++|+||+. +
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTS
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCC
Confidence 3489999999999996 89999998 99988777655554556667788652 22334457789999984 5
Q ss_pred cc
Q 007951 187 SD 188 (583)
Q Consensus 187 pd 188 (583)
|+
T Consensus 92 ~~ 93 (494)
T 4hv4_A 92 SA 93 (494)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.048 Score=52.02 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=55.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILav 186 (583)
|+|.|+| .|-+|.++++.|.+. | ++|++..|..++..+ ....++......+.+ ..++++++|+||.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 7899999 699999999999988 8 788777776433211 111122110011233 446788999999887
Q ss_pred cchHHHHHHHHHHhcCC---CCcEEEEec
Q 007951 187 SDAAQADNYEKIFSCMK---PNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk---~GaiL~~a~ 212 (583)
.........+.+.+.++ .+.+|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 75443333334444432 234554443
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.58 Score=47.94 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIG-VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-ECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 45 8999999999999999988887 87 5554 4444566788888887420 1000 12333332 58
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
|+||-++... +.++.....++++ -.++..
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEE
Confidence 9999998752 2345555677776 554433
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.34 Score=45.25 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=46.9
Q ss_pred CEEEEEc-cchhHHHHHHHHH-HhhhhhcCCceEEEEecCCc-ccHHHH-HHcCceecCCCcCC---HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s-~s~~~A-~~~G~~~~d~t~~d---~~Eav~~ADIVIL 184 (583)
|+|.|+| .|.+|.++++.|. +. |++|++..|..+ +..+.+ ...++......+.+ ..++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 5999999999999 77 999887777643 222221 11222210011233 3467889999999
Q ss_pred eccch
Q 007951 185 LISDA 189 (583)
Q Consensus 185 avpd~ 189 (583)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88753
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.17 Score=52.19 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=52.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhh--hhcCCceEE-EEecCCcccHH--------HHH-HcCceecCCCcC---CHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGSRSFA--------EAR-AAGFTEENGTLG---DIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~--~~g~G~~Vi-Vg~r~~s~s~~--------~A~-~~G~~~~d~t~~---d~~Eav 176 (583)
.+|||||+|.+|..++..|.+.-+ ..|.+++++ +.+++..+..+ ... ..++.. ... |.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 479999999999999999877510 011124443 33333222111 111 123210 023 677776
Q ss_pred -ccCCeEEEeccch----HHHHHHHHHHhcCCCCcEEEE
Q 007951 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 177 -~~ADIVILavpd~----a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
.+.|+|+.|+|+. .+.+++. ..|+.|+-|+.
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~---~AL~aGkhVvt 119 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYK---ETFENGKDVVT 119 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHH---HHHHTTCEEEE
T ss_pred CCCCCEEEECCCCCCccchHHHHHH---HHHHCCCeEEe
Confidence 4689999999985 4444444 34566776554
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.22 Score=51.32 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=58.8
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
-.++| |++.|||-+ ..|..+|.-|... +..|.+.... +.++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 35788 999999976 6799999999887 7777665321 2467788999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++.-... +. .+.+|+|++|+|+ |++
T Consensus 229 A~G~p~~---i~--~d~vk~GavVIDV-Gin 253 (303)
T 4b4u_A 229 AVGKAEL---IQ--KDWIKQGAVVVDA-GFH 253 (303)
T ss_dssp CSCSTTC---BC--GGGSCTTCEEEEC-CCB
T ss_pred ccCCCCc---cc--cccccCCCEEEEe-cee
Confidence 9874322 22 3568999999987 454
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.75 Score=47.88 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=60.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~AD 180 (583)
.| .+|.|+|.|.+|...++-++.. |. +|+ +.+.+++..+.+++.|...- +....+..+.+ ...|
T Consensus 213 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 213 PG-DNVVILGGGPIGLAAVAILKHA------GASKVI-LSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 45 7999999999999999998887 88 554 45555566788888886420 11112333322 2589
Q ss_pred eEEEeccch--HHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDA--AQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~--a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... .....++-+...++++-.++..
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 999999876 2222333332334776665544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.57 Score=43.46 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=46.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC-HhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~~Eav~~ADIVILavpd 188 (583)
|||.|+|. |.+|.++++.|.+. |++|++..|..++ .......++..-...+.+ ..+++.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 67999997 99999999999998 9998877775332 222222343211000111 11678899999998754
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.34 Score=45.21 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.0
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC----HhhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d----~~Eav~~ADIVILav 186 (583)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..+. .++......+.+ ..+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5899999 899999999999988 99988877764432111 222211111233 446778899999987
Q ss_pred cch
Q 007951 187 SDA 189 (583)
Q Consensus 187 pd~ 189 (583)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 643
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.21 Score=54.32 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=56.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC-H-hhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~-~Eav~~ADIVILavpd~ 189 (583)
++|.|||+|..|..+|+.|.+. |+++++.+.+.++ .+.+. -+...|.+-.+ . +.-+++||.++++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 9888776654433 22221 23332322122 1 23478999999999987
Q ss_pred HHHHHHHHHHhcCCCC-cEEE
Q 007951 190 AQADNYEKIFSCMKPN-SILG 209 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~G-aiL~ 209 (583)
...-+.-.++..+.+. .+|.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEE
Confidence 5433333444445554 3444
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.73 Score=47.24 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=59.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIA-IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 45 7999999999999999988887 87 5554 4444556788888887420 1000 12333332 58
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~ 210 (583)
|+||-++... +.++.....++++ -.++.
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEE
Confidence 9999998752 2345555667776 55443
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.36 Score=47.10 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=48.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc--HHHH------HHcCceecCCCcCC---HhhhhccC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISGS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s--~~~A------~~~G~~~~d~t~~d---~~Eav~~A 179 (583)
++|.|+|. |.+|.+++..|.+. |++|++..|..+.. .+++ ...|+......+.+ +.++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence 78999996 99999999999998 88887777753221 1111 23455321111233 44677889
Q ss_pred CeEEEeccch
Q 007951 180 DLVLLLISDA 189 (583)
Q Consensus 180 DIVILavpd~ 189 (583)
|+||.+....
T Consensus 79 d~vi~~a~~~ 88 (308)
T 1qyc_A 79 DVVISTVGSL 88 (308)
T ss_dssp SEEEECCCGG
T ss_pred CEEEECCcch
Confidence 9999988753
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=92.34 E-value=0.31 Score=50.29 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=51.3
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcC--ceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~d~t~~d~~E 174 (583)
.|+| .||++||=| ++..|++..+..- |.++.+..... +.-.+ .|.+.| +.. +.+++|
T Consensus 145 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 213 (307)
T 2i6u_A 145 ALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAHA 213 (307)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 4788 899999986 9999999999887 98887765542 11222 233667 333 578999
Q ss_pred hhccCCeEEEec
Q 007951 175 TISGSDLVLLLI 186 (583)
Q Consensus 175 av~~ADIVILav 186 (583)
+++++|+|+..+
T Consensus 214 av~~aDvvy~~~ 225 (307)
T 2i6u_A 214 AAAGADVLVTDT 225 (307)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEecc
Confidence 999999999854
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.54 Score=46.26 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=48.5
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH------cCce---ecCCC-cCCHhh
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFT---EENGT-LGDIYE 174 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~------~G~~---~~d~t-~~d~~E 174 (583)
..+++ |+|.|.|. |-+|.+++..|.+. |++|++..|..++....... .++. ..|-+ ..+..+
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 45678 99999997 99999999999998 99887777653322111111 1221 11101 123456
Q ss_pred hhccCCeEEEecc
Q 007951 175 TISGSDLVLLLIS 187 (583)
Q Consensus 175 av~~ADIVILavp 187 (583)
++++.|+||.+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 6778999998764
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=92.26 E-value=0.31 Score=50.71 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=51.6
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G~~~~d~t~~d~~Eav 176 (583)
.|+| .||++||=| ++..|++..+..- |.++.+..... +.-.+ .|.+.|.... .+.+++|++
T Consensus 164 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 234 (325)
T 1vlv_A 164 RLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEAL 234 (325)
T ss_dssp CSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHH
T ss_pred CcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHH
Confidence 4788 899999986 9999999999887 98887765432 11222 3336673210 157899999
Q ss_pred ccCCeEEEecc
Q 007951 177 SGSDLVLLLIS 187 (583)
Q Consensus 177 ~~ADIVILavp 187 (583)
++||+|+..+=
T Consensus 235 ~~aDvvyt~~w 245 (325)
T 1vlv_A 235 AGADVVYTDVW 245 (325)
T ss_dssp TTCSEEEECCC
T ss_pred ccCCEEEeccc
Confidence 99999998543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.24 E-value=0.74 Score=47.15 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=59.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...++...+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIG-VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 45 8999999999999999998887 87 5554 4444556788888886420 1000 12333332 47
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
|+||-++... +.++.....++++ -.++..
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEe
Confidence 9999998753 2344555567776 554433
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.83 Score=46.80 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=59.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|...- +..- .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIA-VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-EcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 45 8999999999999999998887 87 5554 4444566788888886420 1000 12333332 47
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~ 210 (583)
|+||-++... ..++.....++++ -.++.
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEE
Confidence 9999998752 2345556677776 54443
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.45 Score=46.40 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=47.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC-------cccHH--HHHHcCceecCCCcCC---Hhhhhcc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-------SRSFA--EARAAGFTEENGTLGD---IYETISG 178 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-------s~s~~--~A~~~G~~~~d~t~~d---~~Eav~~ 178 (583)
++|.|+|. |.+|.++++.|.+. |++|++..|.. ++... .....|+......+.+ +.+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 78999996 99999999999998 88888777764 11111 1123454321111233 4567888
Q ss_pred CCeEEEeccc
Q 007951 179 SDLVLLLISD 188 (583)
Q Consensus 179 ADIVILavpd 188 (583)
+|+||.+...
T Consensus 77 ~d~vi~~a~~ 86 (307)
T 2gas_A 77 VDIVICAAGR 86 (307)
T ss_dssp CSEEEECSSS
T ss_pred CCEEEECCcc
Confidence 9999998874
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.16 Score=53.09 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=54.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCC------ceEEEEecCC--cccHHHH----HH-cCceecCCCcCCHhhhhc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD------IVVKVGLRKG--SRSFAEA----RA-AGFTEENGTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G------~~ViVg~r~~--s~s~~~A----~~-~G~~~~d~t~~d~~Eav~ 177 (583)
+||+||| .|.+|..+.+.|.+. + ++++...+.. .+..... .. ...... -.+ .+.+.
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~-~~~~~ 79 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTE-AAVLG 79 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECC-HHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCC-HHHhc
Confidence 6999999 999999999999876 4 3544433221 1211110 00 011110 113 24456
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|+||+|+|.....++.+.+ +.|..|+|.++-
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~ 112 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD 112 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred CCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence 899999999988776666554 467778877653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.8 Score=46.81 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=59.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~--~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +..- .+..+.+. ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIG-VDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEE-ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 45 7999999999999999998887 87 5554 4444556788888886420 1000 12333332 48
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
|+||-++... ..++.....++++ -.++..
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEE
Confidence 9999998752 2345556677776 554433
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.27 Score=50.44 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=61.1
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhh----ccCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav----~~AD 180 (583)
.++| ++|.|+|.|.+|...++.++.. |.+|++..+..+ +..+.+++.|....+ .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 3458 9999999999999999999988 888776665540 345777778875311 11 222222 3589
Q ss_pred eEEEeccchHHHHHH-HHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl-~eI~~~Lk~GaiL~~a 211 (583)
+||-++.... .+ +...+.|+++-.++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9999887532 23 5556667766554433
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.46 Score=48.96 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=61.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc--------c
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------G 178 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~--------~ 178 (583)
.| .+|.|+|.|.+|...++-++.. |. .|+ ..+.+++..+.+++.|.... +....+..+.+. .
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVI-LSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 56 8999999999999999988887 88 554 45555566788888887421 111234444443 3
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+||-++... +.++.....+++|-.++..
T Consensus 254 ~Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 254 VDVVIECAGVA---ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EEEEEECSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 79999998743 2344445556666655544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.32 Score=52.36 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=48.1
Q ss_pred cCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+++|.|||+|-.|.+ +|+-|++. |++|.+.+...+...+...+.|+....+ .+. +.++++|+||+.
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 34589999999999997 99999988 9998776655443334455678764221 122 456789999884
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.76 Score=47.97 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=42.4
Q ss_pred hhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCC--ceEEEEecCCccc--HHHHH--HcC-ce--ecCCCcCCHhh
Q 007951 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEAR--AAG-FT--EENGTLGDIYE 174 (583)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G--~~ViVg~r~~s~s--~~~A~--~~G-~~--~~d~t~~d~~E 174 (583)
+..... -||+|||. |.+|.+++..|... +=.|.+ .++.+.+...... .-.+. .+. +. .......+..+
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~ 96 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRV 96 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHH
Confidence 344555 69999996 99999999998875 001111 1444433322111 11111 111 10 00001346778
Q ss_pred hhccCCeEEEec
Q 007951 175 TISGSDLVLLLI 186 (583)
Q Consensus 175 av~~ADIVILav 186 (583)
++++||+||++-
T Consensus 97 a~~~advVvi~a 108 (345)
T 4h7p_A 97 AFDGVAIAIMCG 108 (345)
T ss_dssp HTTTCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 899999999954
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.49 Score=46.66 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=49.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH---HHHcCceecCCCcCC---HhhhhccCCeEEE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~---A~~~G~~~~d~t~~d---~~Eav~~ADIVIL 184 (583)
++|.|+|. |.+|.+++..|.+. |++|++..|..+...+. ....|+......+.+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 58999995 99999999999998 88888777764322221 123455321111233 4567889999999
Q ss_pred eccch
Q 007951 185 LISDA 189 (583)
Q Consensus 185 avpd~ 189 (583)
+....
T Consensus 86 ~a~~~ 90 (318)
T 2r6j_A 86 ALAFP 90 (318)
T ss_dssp CCCGG
T ss_pred CCchh
Confidence 88753
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.39 Score=49.87 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCc--eecCCCcCCHhhh
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGTLGDIYET 175 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~--~~~d~t~~d~~Ea 175 (583)
.|+| .||++||= +++..|++..+..- |.++.+..... +...+. +.+.|. .. +.+++|+
T Consensus 154 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~ea 222 (323)
T 3gd5_A 154 RLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFEA 222 (323)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 4788 99999995 68899999988776 88877765432 222232 334453 33 5789999
Q ss_pred hccCCeEEEec
Q 007951 176 ISGSDLVLLLI 186 (583)
Q Consensus 176 v~~ADIVILav 186 (583)
+++||+|+..+
T Consensus 223 v~~aDvvyt~~ 233 (323)
T 3gd5_A 223 ARGAHILYTDV 233 (323)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEEec
Confidence 99999999865
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.46 Score=47.65 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=49.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH------HHcCceecCCCcCC---Hhhhhc--cC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA------RAAGFTEENGTLGD---IYETIS--GS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A------~~~G~~~~d~t~~d---~~Eav~--~A 179 (583)
++|.|+|. |.+|.+++..|.+. |++|++..|..+...+++ ...|+....+.+.+ ..++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999998 99999999999998 888888777642222111 23455321111333 345777 99
Q ss_pred CeEEEeccch
Q 007951 180 DLVLLLISDA 189 (583)
Q Consensus 180 DIVILavpd~ 189 (583)
|+||.+....
T Consensus 85 d~Vi~~a~~~ 94 (346)
T 3i6i_A 85 DIVVSTVGGE 94 (346)
T ss_dssp CEEEECCCGG
T ss_pred CEEEECCchh
Confidence 9999988764
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.57 Score=42.52 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=46.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavp 187 (583)
|+|.|+|. |.+|.++++.|.+. |++|++..|..++.... ...++......+.+ ..++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999997 99999999999998 99888777754322110 01222210011223 4467788999999876
Q ss_pred c
Q 007951 188 D 188 (583)
Q Consensus 188 d 188 (583)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.36 Score=49.01 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=60.5
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhhc------cCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS------GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav~------~AD 180 (583)
.| ++|.|+|.|.+|...++-++.. |. +|++..+. ++..+.+++.|... -+....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 67 8999999999999999999987 88 77655443 45567788888631 0111123333332 589
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... +.++...+.++++-.++..
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEE
Confidence 999999852 2344555566666555544
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.65 Score=47.86 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=49.8
Q ss_pred hhc-CCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHH----HHcCceecCCCcCCHhhhh
Q 007951 107 AFN-GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~-gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A----~~~G~~~~d~t~~d~~Eav 176 (583)
.++ | .||++||= +++..|++..+..- |.++.+..... +...+.+ .+.|.... ...+++|++
T Consensus 142 ~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 212 (307)
T 3tpf_A 142 MQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEAL 212 (307)
T ss_dssp CGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHH
T ss_pred CCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 467 8 99999995 58889999888877 88877765432 2222323 35554310 157899999
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
+++|+|+..+
T Consensus 213 ~~aDvvyt~~ 222 (307)
T 3tpf_A 213 KDKDVVITDT 222 (307)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 9999999876
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.88 Score=45.76 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=61.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~AD 180 (583)
..| ++|.|+|.|.+|...++-++.. |..+++..+.+++..+.+++.|.... +..-.+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 356 8999999999999999988887 87666666655666889999996421 11112233322 3468
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+-++... ..++.....+++|-.++..
T Consensus 232 ~v~d~~G~~---~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 232 LILETAGVP---QTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp EEEECSCSH---HHHHHHHHHCCTTCEEEEC
T ss_pred ccccccccc---chhhhhhheecCCeEEEEE
Confidence 888877632 2344444566777665544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.31 Score=49.51 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=62.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|...- ..+.++..+..|+||-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFAR-NEHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECS-SSTTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 56 8999999999999999999887 888765444 4456788889887531 22333333478999999886
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 189 AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.. .++.....++++-.++..
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEEC
T ss_pred HH---HHHHHHHHHhcCCEEEEE
Confidence 52 244445567776665544
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.25 Score=51.06 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=47.5
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcC--ceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG--FTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G--~~~~d~t~~d~~Eav~~A 179 (583)
.|+| .||++||= +++..|++..+..- |.++.+....+ +... +++.| +.. ..+++|+++++
T Consensus 151 ~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~--~~~~g~~v~~----~~d~~eav~~a 217 (309)
T 4f2g_A 151 PIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLV--DAESAPFYQV----FDDPNEACKGA 217 (309)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGS--CGGGGGGEEE----CSSHHHHTTTC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHH--HHHcCCeEEE----EcCHHHHhcCC
Confidence 4788 89999995 58899999888877 88877764431 1111 22333 332 56899999999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+|+..+
T Consensus 218 Dvvyt~~ 224 (309)
T 4f2g_A 218 DLVTTDV 224 (309)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9999854
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=91.53 E-value=0.44 Score=49.42 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=47.3
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcC--ceecCCCcCCHhhh
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYET 175 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G--~~~~d~t~~d~~Ea 175 (583)
.|+| .||++||=|+ +..|++..+..- |.++.+..... +.-.+. |.+.| +.. +.+++|+
T Consensus 152 ~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ea 220 (321)
T 1oth_A 152 SLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLEA 220 (321)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHHH
Confidence 4788 8999999864 777776666655 88887765542 111222 22455 332 5789999
Q ss_pred hccCCeEEEec
Q 007951 176 ISGSDLVLLLI 186 (583)
Q Consensus 176 v~~ADIVILav 186 (583)
++++|+|+..+
T Consensus 221 v~~aDvvy~d~ 231 (321)
T 1oth_A 221 AHGGNVLITDT 231 (321)
T ss_dssp HTTCSEEEECC
T ss_pred hccCCEEEEec
Confidence 99999999955
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.25 Score=51.30 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=60.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCH-hhhhc------cCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~-~Eav~------~AD 180 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +++..+.+++.|...-+....+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQ-NPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEES-CHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988887 87 6655444 44557888888873211111222 23222 589
Q ss_pred eEEEeccchH-----------HHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a-----------~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++.... -...+++....+++|-.++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 9999987542 112455556667776655433
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.43 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHH----HHHHcC--ceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~d~t~~d~~E 174 (583)
.|+| .||++||=| +++.|++..+..- |.++.+..... +...+ .|.+.| +.. +.+++|
T Consensus 173 ~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 241 (359)
T 2w37_A 173 KLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLDE 241 (359)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 4788 899999986 9999999999887 88887765432 12222 233566 333 578999
Q ss_pred hhccCCeEEEecc
Q 007951 175 TISGSDLVLLLIS 187 (583)
Q Consensus 175 av~~ADIVILavp 187 (583)
++++||+|+..+=
T Consensus 242 av~~aDvvytd~w 254 (359)
T 2w37_A 242 GLKGSNVVYTDVW 254 (359)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhcCCCEEEEccc
Confidence 9999999998553
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.27 E-value=0.43 Score=48.87 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=59.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~ADI 181 (583)
.| ++|.|+|.|.+|...++-++.. |. +|+ +...+++..+.+++.|...- +....+..+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIII-AVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEE-EEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 45 7999999999999999988877 87 454 44444556788888886310 111123333332 4799
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++... ..++.....++++-.++..
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEe
Confidence 99998753 2345555667776655544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.69 Score=49.71 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=64.3
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC-ceecCCCcCC----HhhhhccCCeEEEe
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGD----IYETISGSDLVLLL 185 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G-~~~~d~t~~d----~~Eav~~ADIVILa 185 (583)
.++|.|+|.|++|..+|+.|.+ +++|.+-.....+....|.+.. ...-.+...+ .++-+.++|+++.+
T Consensus 235 ~~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~ 307 (461)
T 4g65_A 235 YRRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIAL 307 (461)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred ccEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEc
Confidence 4899999999999999999854 5677777666566566666542 2111111223 23467899999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|.++..-=+..-++..+...+++..+.-
T Consensus 308 T~~De~Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 308 TNEDETNIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred ccCcHHHHHHHHHHHHcCCccccccccc
Confidence 9987654444456666666667776643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.73 Score=47.36 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=60.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCC--cCCHhhhhc-----cC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t--~~d~~Eav~-----~A 179 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.++...+.+++.|.... +.. ..+..+.+. ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIG-IDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEE-ECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 46 8999999999999999999887 87 5654 4444556788999887420 100 122333332 48
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCC-cEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~G-aiL~~a 211 (583)
|+||-++... +.++.....+++| -.++..
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEE
Confidence 9999998863 2355555677774 444433
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.89 Score=48.75 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=53.8
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHH-HHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~-A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|..|.+-++.|.+. |.+|+|.........+. +.+.++....+. .+ .+-+.++|+||.+
T Consensus 9 ~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~-~~-~~~l~~~~lVi~a 79 (457)
T 1pjq_A 9 QLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSCWLAIAA 79 (457)
T ss_dssp CCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTCSEEEEC
T ss_pred ECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECC-CC-ccccCCccEEEEc
Confidence 4788 9999999999999999999998 98887776543332222 222334321111 12 2346789999999
Q ss_pred ccchHH-HHHHHH
Q 007951 186 ISDAAQ-ADNYEK 197 (583)
Q Consensus 186 vpd~a~-~~Vl~e 197 (583)
+.+... ..++..
T Consensus 80 t~~~~~n~~i~~~ 92 (457)
T 1pjq_A 80 TDDDTVNQRVSDA 92 (457)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 887754 334443
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.5 Score=49.43 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=49.7
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCc--eecCCCcCCHhhh
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGTLGDIYET 175 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~--~~~d~t~~d~~Ea 175 (583)
.++| .||++||= +++..|++..+..- |.++.+..... +...+. |.+.|. .. +.+++|+
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~----~~d~~ea 244 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI----LHNPELA 244 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 3788 99999996 57889999888877 88877765432 222222 345663 32 5689999
Q ss_pred hccCCeEEEec
Q 007951 176 ISGSDLVLLLI 186 (583)
Q Consensus 176 v~~ADIVILav 186 (583)
+++||+|+..+
T Consensus 245 v~~aDVvyt~~ 255 (340)
T 4ep1_A 245 VNEADFIYTDV 255 (340)
T ss_dssp HTTCSEEEECC
T ss_pred hCCCCEEEecC
Confidence 99999999865
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.02 E-value=0.45 Score=49.23 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=60.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC-Hhhhh------ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d-~~Eav------~~ADI 181 (583)
.| .+|.|+|.|.+|...++-++.. |...+++.+.++...+.+++.|...-+....+ ..+.+ ...|+
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988877 87333444444556788888887421111111 22222 24799
Q ss_pred EEEeccchH------------HHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a------------~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++.... ....+++....+++|-.++..
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 999987542 112455555667776555443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.95 Score=46.17 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=30.2
Q ss_pred cccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
|.|....+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 25 ~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~ 68 (292)
T 3h8v_A 25 MGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDY 68 (292)
T ss_dssp -------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECC
T ss_pred cChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 555334567888 9999999999999999999988 76 5555543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.99 E-value=1 Score=45.79 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=59.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCc-CCH-h---hhh-----c
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDI-Y---ETI-----S 177 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~-~d~-~---Eav-----~ 177 (583)
.| ++|.|+|.|.+|...++-++.. |.+|++ .+.+++..+.+++.|...- +... .+. + +.. .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~-~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVC-TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEE-EcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 56 8999999999999999988877 888544 4444556778888886310 1110 121 1 222 2
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
..|+||-++.... .++.....++++-.++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5899999997542 344455567776655443
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=0.35 Score=49.92 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.|+| .||++||=| ++..|++..+..- |.++.+.... ++...+.+++.|.... .+.+++|++++|
T Consensus 152 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (308)
T 1ml4_A 152 RIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKL 222 (308)
T ss_dssp CSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTC
T ss_pred CCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 4678 899999984 8999999998876 8888776543 2223456666675310 146889999999
Q ss_pred CeEEEecc
Q 007951 180 DLVLLLIS 187 (583)
Q Consensus 180 DIVILavp 187 (583)
|+|+...=
T Consensus 223 Dvvyt~~~ 230 (308)
T 1ml4_A 223 DVLYVTRI 230 (308)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.69 Score=49.64 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=64.0
Q ss_pred hhcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--ceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--~~~~d~t~~d~~E 174 (583)
.++| +||+|.|+- +-...++..|.+. |.+|.+.+..-.. +.....| +.. +.+..+
T Consensus 315 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~----~~~~~~ 381 (450)
T 3gg2_A 315 NVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAMK--EAQKRLGDKVEY----TTDMYD 381 (450)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCHH--HHHHHHGGGSEE----CSSHHH
T ss_pred cCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCcH--HHHHhcCcccee----cCCHHH
Confidence 4688 999999973 3466778888877 9898876654321 1112233 442 467889
Q ss_pred hhccCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEecCc
Q 007951 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++++|.|+++|.-....+ -++.+...++ +.+|.|.-++
T Consensus 382 ~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 382 AVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 9999999999999776643 2455666665 4577887654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.84 Score=45.44 Aligned_cols=75 Identities=19% Similarity=0.106 Sum_probs=49.8
Q ss_pred hhhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH---H-------cCceecCCCcCC---
Q 007951 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-------AGFTEENGTLGD--- 171 (583)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~---~-------~G~~~~d~t~~d--- 171 (583)
..+++ |+|.|+| .|-+|.+++..|.+. |++|++..|.......... . .++......+.+
T Consensus 21 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 21 LIFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 34567 9999999 599999999999998 9998877775433222221 1 233211111233
Q ss_pred HhhhhccCCeEEEecc
Q 007951 172 IYETISGSDLVLLLIS 187 (583)
Q Consensus 172 ~~Eav~~ADIVILavp 187 (583)
..++++++|+||.+..
T Consensus 94 ~~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHHTTTCSEEEECCC
T ss_pred HHHHhcCCCEEEECCc
Confidence 3467789999998865
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.81 Score=46.63 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=58.7
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCC---cCCHhhhh-----cc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t---~~d~~Eav-----~~ 178 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++.. .++...+.+++.|...- +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEC-CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 46 8999999999999999988877 88 665544 44555788888886310 100 00111122 35
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+||-++.... .++.....+++|-.++..
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 899999987532 344445567776655443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.66 Score=42.82 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=58.5
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav------~~AD 180 (583)
+| ++|.|+| .|.+|.+.++.++.. |.+|++..+. +...+.+++.|... .+....+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 46 8999999 699999999999988 8887665554 34455666666521 011111222222 2479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+||.++.+ +.++...+.+++|-.++...
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECS
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEc
Confidence 99988864 34556666777766655443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.77 Score=47.09 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=58.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cc---eecCCCcCCHhhhh-c
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYETI-S 177 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~---~~~d~t~~d~~Eav-~ 177 (583)
..-.| ++|..||+|..|.+...-.+.. |.+| ++.+.++...+.|++. |. ... ..+..+.- .
T Consensus 119 ~l~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~ 187 (298)
T 3fpf_A 119 RFRRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVI---TGDETVIDGL 187 (298)
T ss_dssp TCCTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGC
T ss_pred CCCCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCC
Confidence 44567 9999999998765432222223 5564 6777766666666653 53 110 12333321 4
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEE
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..|+|++..-.....++++++...||||-.|+
T Consensus 188 ~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 188 EFDVLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp CCSEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred CcCEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 67999987554455679999999999988654
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=90.53 E-value=0.91 Score=44.30 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccH-HHHHHcCceecCCCcCC---HhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILa 185 (583)
|+|.|+|. |.+|.++++.|.+. | ++|++..|..++.. +.....|+......+.+ +.++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999997 99999999999988 8 88887777644321 12223454321111233 44678899999998
Q ss_pred ccc
Q 007951 186 ISD 188 (583)
Q Consensus 186 vpd 188 (583)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.7 Score=46.62 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=60.8
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc----cCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~----~ADIVI 183 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|.... +....+..+.+. ..|+||
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDI-DDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 56 8999999999999999999987 888765544 4556788888886320 111123333333 579999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.++... +.++.....++++-.++..
T Consensus 238 d~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 238 VTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 887632 2445555667776655543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.36 Score=49.47 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=59.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCCe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~ADI 181 (583)
.| ++|.|+|.|.+|...++-++.. |.+|++..+. +...+.+++.|.... +....+..+.+ ...|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSS-REKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecC-chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 35 7999999999999999999887 8887665543 455677888886420 11112333322 16899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++..... +.....++++-.++..
T Consensus 261 vid~~g~~~~----~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 261 ILEIAGGAGL----GQSLKAVAPDGRISVI 286 (363)
T ss_dssp EEEETTSSCH----HHHHHHEEEEEEEEEE
T ss_pred EEECCChHHH----HHHHHHhhcCCEEEEE
Confidence 9999885443 3344456666555444
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.76 Score=48.11 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=54.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHH-----------HcCceecCCCcCCHhhhhc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR-----------AAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~-----------~~G~~~~d~t~~d~~Eav~ 177 (583)
.|||||| .|..|.-+.+-|.+. + .+++...... ..+.....- ....... ..+. +.+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~---~~~~-~~~~ 78 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK---PTDP-KLMD 78 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE---ECCG-GGCT
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE---eCCH-HHhc
Confidence 5899999 699999999866543 1 2344332222 123332210 0011110 1122 3457
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|+||+|+|.....++.+.+. +.|..++|.++-
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpl_A 79 DVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 8999999999988887777654 468888877653
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.76 Score=48.11 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=54.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHH-----------HcCceecCCCcCCHhhhhc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR-----------AAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~-----------~~G~~~~d~t~~d~~Eav~ 177 (583)
.|||||| .|..|.-+.+-|.+. + .+++...... ..+.....- ....... ..+. +.+.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~---~~~~-~~~~ 78 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK---PTDP-KLMD 78 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE---ECCG-GGCT
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE---eCCH-HHhc
Confidence 5899999 699999999866543 1 2344332222 123332210 0011110 1122 3457
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
++|+||+|+|.....++.+.+. +.|..++|.++-
T Consensus 79 ~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpk_A 79 DVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp TCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 8999999999988887777654 468888877653
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=90.35 E-value=0.74 Score=47.80 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=54.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHH----HcCc-----ee--cCC-------C---
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAGF-----TE--ENG-------T--- 168 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~----~~G~-----~~--~d~-------t--- 168 (583)
.||||+|+|.+|.-+++.|.+. .+++++...+. +........ ..|- .. ++. .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998764 14565544442 222221221 1121 00 000 0
Q ss_pred c--CCHhhh---hccCCeEEEeccchHHHHHHHHHHhcCCCCc--EEEEec
Q 007951 169 L--GDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSH 212 (583)
Q Consensus 169 ~--~d~~Ea---v~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga--iL~~a~ 212 (583)
. .+++++ -.++|+||.|+|.....+..... ++.|+ +|+...
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~---l~aGak~VVIs~p 126 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH---LKGGAKKVVISAP 126 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH---HHcCCCEEEEecC
Confidence 1 144443 14799999999998887766543 44566 555444
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=90.28 E-value=0.56 Score=47.51 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=52.7
Q ss_pred ccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc
Q 007951 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 98 r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.+.|..+.+..+| +||++||+ | +.+...+ .. +.++.|.++... .|... ....+++++
T Consensus 129 ~d~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~ 185 (270)
T 2h1q_A 129 NDPFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILP 185 (270)
T ss_dssp CCHHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred ccHHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhh
Confidence 4678776678899 99999999 4 5666544 44 678888877643 24332 234566899
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCC
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPN 205 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~G 205 (583)
+||+|++.= -...-..++.|..+.+++
T Consensus 186 ~aD~viiTG-sTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 186 ECDYVYITC-ASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp GCSEEEEET-HHHHHTCHHHHHHHTTTS
T ss_pred cCCEEEEEe-eeeecCCHHHHHHhCccC
Confidence 999988642 222233444444444433
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.41 Score=50.15 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=55.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecC--CcccHHHHH---HcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~--~s~s~~~A~---~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|||||| .|..|.-+.+-|.+. + ..++...... ..+.....- ....... ..+.++...++|+||+|
T Consensus 14 ~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~a 85 (351)
T 1vkn_A 14 IRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFTA 85 (351)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEEC
Confidence 6899998 699999999988865 1 2354332222 122332110 0122210 12445555789999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
+|.....++.+++ .|..|+|.++
T Consensus 86 lp~~~s~~~~~~~-----~g~~VIDlSs 108 (351)
T 1vkn_A 86 LPAGASYDLVREL-----KGVKIIDLGA 108 (351)
T ss_dssp CSTTHHHHHHTTC-----CSCEEEESSS
T ss_pred CCcHHHHHHHHHh-----CCCEEEECCh
Confidence 9988776665544 6888888877
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.8 Score=45.09 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=47.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC-c----ccHHH---HHHcCceecCCCcCC---HhhhhccC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISGS 179 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s----~s~~~---A~~~G~~~~d~t~~d---~~Eav~~A 179 (583)
|+|.|+|. |.+|.+++..|.+. |++|++..|.. + ...+. ....|+......+.+ +.++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~ 78 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQV 78 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred cEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence 78999995 99999999999998 88888777764 1 11111 123454321111233 45678899
Q ss_pred CeEEEeccc
Q 007951 180 DLVLLLISD 188 (583)
Q Consensus 180 DIVILavpd 188 (583)
|+||.+...
T Consensus 79 d~vi~~a~~ 87 (321)
T 3c1o_A 79 DIVISALPF 87 (321)
T ss_dssp SEEEECCCG
T ss_pred CEEEECCCc
Confidence 999998764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.71 Score=46.89 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=60.0
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh------ccCCe
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav------~~ADI 181 (583)
.| ++|.|+| .|.+|.+.++-++.. |.+|++. +. +...+.+++.|...-+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 46 8999999 799999999999987 8887665 43 4457788888875312 122333332 25899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
||-++... .+......++++-.++...
T Consensus 220 vid~~g~~----~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 220 VYDTLGGP----VLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEESSCTH----HHHHHHHHEEEEEEEEESC
T ss_pred EEECCCcH----HHHHHHHHHhcCCeEEEEc
Confidence 99988853 4444455666665555443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.54 Score=50.61 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=66.4
Q ss_pred hhcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-c-CceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~-G~~~~d~t~~d~~E 174 (583)
.++| ++|+|.|+- +-...++..|.+. |.+|.+.+..- .+.+.+ . ++.. +.+..+
T Consensus 319 ~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~~----~~~~~~ 384 (446)
T 4a7p_A 319 DVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVEF----VENPYA 384 (446)
T ss_dssp CCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCCB----CSCHHH
T ss_pred cCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCceE----ecChhH
Confidence 4678 999999997 7788889999988 99888766542 223322 2 4432 467889
Q ss_pred hhccCCeEEEeccchHHHH-HHHHHHhcCCCCcEEEEecCc
Q 007951 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~-Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+++++|+|+++|.-+...+ -++.+...|+. .+|.|.-++
T Consensus 385 ~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 385 AADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 9999999999998766543 24567666653 577777664
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=90.10 E-value=0.67 Score=48.91 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=49.1
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC------cccHH----HHHHcCceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~------s~s~~----~A~~~G~~~~d~t~~d~~E 174 (583)
.|+| .||++||=| +++.|++..+..- |.++.+.-... +...+ .+.+.|.... .+.+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 3788 999999987 7888888888776 88877764432 11122 2445563210 1578999
Q ss_pred hhccCCeEEEe
Q 007951 175 TISGSDLVLLL 185 (583)
Q Consensus 175 av~~ADIVILa 185 (583)
++++||+|+.-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.71 Score=47.99 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=49.1
Q ss_pred hhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCCcc------cHHHHH----H--cCceecCCCcCCH
Q 007951 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEAR----A--AGFTEENGTLGDI 172 (583)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~------s~~~A~----~--~G~~~~d~t~~d~ 172 (583)
.++| .||++||=| ++..|++..+..- |.++.+.....-. ..+.++ + .|.... .+.++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence 5889 999999976 8889999888877 8888776543211 222333 3 463210 15789
Q ss_pred hhhhccCCeEEEe
Q 007951 173 YETISGSDLVLLL 185 (583)
Q Consensus 173 ~Eav~~ADIVILa 185 (583)
+|+++++|+|+.-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999863
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.33 Score=49.72 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=51.6
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| .||++||= +++..|++..+..- |.++.+.....-.... ..+.|+.. ..+++|++++||+|+
T Consensus 143 ~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 143 EVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVVI 210 (291)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEEE
Confidence 4788 89999997 89999999999887 8888776543210001 12457554 578999999999999
Q ss_pred Eeccch
Q 007951 184 LLISDA 189 (583)
Q Consensus 184 Lavpd~ 189 (583)
. +-.+
T Consensus 211 ~-~~~q 215 (291)
T 3d6n_B 211 W-LRLQ 215 (291)
T ss_dssp E-CCCC
T ss_pred E-eCcc
Confidence 8 6543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=90.01 E-value=1.4 Score=40.63 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=58.1
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCc---eecCCCcCCHhh---hhc
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYE---TIS 177 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~---~~~d~t~~d~~E---av~ 177 (583)
-.+ .+|.-||+|. | .++..|.+. +.+.++ ++.+.++...+.|++ .|+ ... ..+..+ ...
T Consensus 39 ~~~-~~vLDiG~G~-G-~~~~~la~~----~~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~ 107 (204)
T 3e05_A 39 QDD-LVMWDIGAGS-A-SVSIEASNL----MPNGRI-FALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLP 107 (204)
T ss_dssp CTT-CEEEEETCTT-C-HHHHHHHHH----CTTSEE-EEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSC
T ss_pred CCC-CEEEEECCCC-C-HHHHHHHHH----CCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCC
Confidence 356 8999999997 3 344455544 112454 566666655655554 232 110 122222 225
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
..|+|++..+......+++++...|+||-.+++.
T Consensus 108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 6899999877667778999999999998876544
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.38 Score=44.83 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEec
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILav 186 (583)
+|+|.|+| .|-+|.++++.|.+. |++|++..|..++.... ..++......+.+ ..++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 37999999 599999999999998 99888777764332111 0222211111223 446788999999987
Q ss_pred cch
Q 007951 187 SDA 189 (583)
Q Consensus 187 pd~ 189 (583)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=1.6 Score=43.15 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=57.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cc----eecCCCcCCHhhhhccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF----TEENGTLGDIYETISGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~----~~~d~t~~d~~Eav~~AD 180 (583)
.+ .+|.-||||. |. ++..|.+.. |.+| ++.+.++...+.|++. |. ... ..+..+.-...|
T Consensus 90 ~~-~~vLDiGcG~-G~-~~~~la~~~-----~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~fD 157 (318)
T 2fk8_A 90 PG-MTLLDIGCGW-GT-TMRRAVERF-----DVNV-IGLTLSKNQHARCEQVLASIDTNRSRQVL---LQGWEDFAEPVD 157 (318)
T ss_dssp TT-CEEEEESCTT-SH-HHHHHHHHH-----CCEE-EEEESCHHHHHHHHHHHHTSCCSSCEEEE---ESCGGGCCCCCS
T ss_pred Cc-CEEEEEcccc-hH-HHHHHHHHC-----CCEE-EEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChHHCCCCcC
Confidence 45 7999999998 33 333333321 5554 5667666555555543 32 110 234444335689
Q ss_pred eEEEe-----ccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 181 IVILa-----vpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
+|+.. +++.....+++++...|+||-.+++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99987 6666778899999999999886553
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=1.1 Score=44.73 Aligned_cols=73 Identities=16% Similarity=0.061 Sum_probs=48.2
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----------HcCceecCCCcCC---Hh
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----------AAGFTEENGTLGD---IY 173 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----------~~G~~~~d~t~~d---~~ 173 (583)
+++ |+|.|.|. |-+|.+++..|.+. |++|++..|......+... ..++......+.+ ..
T Consensus 25 ~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 97 (352)
T 1sb8_A 25 AQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCN 97 (352)
T ss_dssp HSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHH
T ss_pred ccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHH
Confidence 667 89999997 99999999999998 9988877765432211111 1233211111223 34
Q ss_pred hhhccCCeEEEecc
Q 007951 174 ETISGSDLVLLLIS 187 (583)
Q Consensus 174 Eav~~ADIVILavp 187 (583)
+++++.|+||.+..
T Consensus 98 ~~~~~~d~vih~A~ 111 (352)
T 1sb8_A 98 NACAGVDYVLHQAA 111 (352)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEECCc
Confidence 67788999999765
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.43 Score=46.31 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=44.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---Hhhhhcc-CCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISG-SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~-ADIVILavp 187 (583)
|+|.|+|.|.+|..++..|.+. |++|++..|..++. ..++......+.+ ..+++++ +|+||.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 7899999999999999999998 99888777764431 1222210001222 3345666 999998765
Q ss_pred c
Q 007951 188 D 188 (583)
Q Consensus 188 d 188 (583)
+
T Consensus 73 ~ 73 (286)
T 3gpi_A 73 A 73 (286)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.37 Score=52.48 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=33.7
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G 161 (583)
++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+
T Consensus 362 l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~ 408 (523)
T 2o7s_A 362 LAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIG 408 (523)
T ss_dssp -----CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTT
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC
Confidence 567 8899999999999999999998 8888888887555445555443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=89.55 E-value=0.4 Score=47.58 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=58.9
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCc-CCHhhhhccCCeEEEe
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~-~d~~Eav~~ADIVILa 185 (583)
.| ++|.|+|. |.+|...++-++.. |.+|++..++ ++..+.+++.|.... +... .+..+.+...|+||-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 46 89999998 99999999999887 8887665554 444567777886420 0000 112233467899998
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+... .++.....++++-.++..
T Consensus 196 ~g~~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT----THHHHHTTEEEEEEEEEC
T ss_pred CCHH----HHHHHHHhhccCCEEEEE
Confidence 7763 455556667776555443
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.69 Score=40.45 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=55.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~ 189 (583)
+++.|||.|..|..++..|++. .|++++...+.++..... .-.|+...+ ..+..+.++ +.|.|++++|..
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~-----~g~~vvg~~d~~~~~~g~-~i~g~pV~g--~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG-----KEFHPIAFIDDDRKKHKT-TMQGITIYR--PKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEECSCGGGTTC-EETTEEEEC--GGGHHHHHHHHTCCEEEECCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCcEEEEEEECCcccCCC-EecCeEEEC--HHHHHHHHHHCCCCEEEEeCCCC
Confidence 7899999999999999999875 167776555554321110 113554311 234555544 578999999864
Q ss_pred HHHHHHHHHHhc-CCCCcEEEEecCc
Q 007951 190 AQADNYEKIFSC-MKPNSILGLSHGF 214 (583)
Q Consensus 190 a~~~Vl~eI~~~-Lk~GaiL~~a~G~ 214 (583)
.. +...++... .+.|.-+.+...+
T Consensus 77 ~~-~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQ-VQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp CH-HHHHHHHHHHHTTTCEEEECCCH
T ss_pred CH-HHHHHHHHHHHHcCCeEEECCCH
Confidence 43 223333322 2345556555544
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.46 E-value=0.8 Score=44.72 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=47.0
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc----cHHH---HHHcCceecCCCcCC---HhhhhccCC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGSD 180 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~----s~~~---A~~~G~~~~d~t~~d---~~Eav~~AD 180 (583)
|+|.|+| .|.+|.+++..|.+. |++|++..|..+. ..+. ....|+......+.+ +.++++++|
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence 7899999 599999999999998 8888777775321 1111 112354321111233 446778899
Q ss_pred eEEEeccc
Q 007951 181 LVLLLISD 188 (583)
Q Consensus 181 IVILavpd 188 (583)
+||.+...
T Consensus 79 ~vi~~a~~ 86 (313)
T 1qyd_A 79 VVISALAG 86 (313)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99988764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.42 E-value=0.75 Score=46.55 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=59.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh----ccCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav----~~ADIVI 183 (583)
.| ++|.|+|.|.+|...++-++.. |.+|++..+ ++...+.+++.|.... +....+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDI-GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 46 8999999999999999999987 887765444 4555677888886320 11112222222 4689999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-++... ..++.....++++-.++..
T Consensus 236 d~~g~~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 236 VTAVSK---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 998752 2344445566666554433
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=89.31 E-value=0.58 Score=51.08 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=57.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHcCceecCCCc--CC----HhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~G~~~~d~t~--~d----~~Eav~~ADIV 182 (583)
+||.|||+|.||.+++.-|.++ .++ .|++.+..... .+.....|+......+ .+ +.+++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~-----~dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEK-----FDIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH-----BCCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CCCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 6799999999999999998876 134 56666544322 2333444643211111 22 23466667999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
|.+.++.....+++.. +..|...++.+
T Consensus 88 IN~s~~~~~l~Im~ac---leaGv~YlDTa 114 (480)
T 2ph5_A 88 IDVSIGISSLALIILC---NQKGALYINAA 114 (480)
T ss_dssp EECCSSSCHHHHHHHH---HHHTCEEEESS
T ss_pred EECCccccCHHHHHHH---HHcCCCEEECC
Confidence 9999888776666643 23465556654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.96 E-value=0.47 Score=48.95 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=58.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d---~~Eav~~ADIVIL 184 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|.... + ..+ ..++....|+||-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~-~~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTT-SEAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES-SGGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 46 8999999999999999988887 888655444 4456778888886320 1 111 1222346899999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.... .++.....++++-.++..
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEe
Confidence 987532 233445566666554443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=88.95 E-value=0.46 Score=48.28 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=59.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc------cCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~------~AD 180 (583)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|...- +....+..+.+. ..|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFA-VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEE-ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEE-ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 46 8999999999999999998877 87 5654 4555556788888887420 111122222221 489
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++.... .++.....+++|-.++..
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEe
Confidence 9999887632 344444556666555544
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=88.93 E-value=0.87 Score=42.81 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=47.9
Q ss_pred hcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCc--eecCCC-cCCHhhhhccCCe
Q 007951 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGF--TEENGT-LGDIYETISGSDL 181 (583)
Q Consensus 108 l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~--~~~d~t-~~d~~Eav~~ADI 181 (583)
+++ |+|.|.| .|-+|.++++.|.+. |+ +|++..|..++....+ ..++ ...|-+ ..+..+++++.|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 567 8999999 699999999999998 98 8887777543221111 1122 111100 1234567788999
Q ss_pred EEEeccc
Q 007951 182 VLLLISD 188 (583)
Q Consensus 182 VILavpd 188 (583)
||.+...
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998754
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=88.88 E-value=0.74 Score=47.43 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=47.0
Q ss_pred hhcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.++| .||++||=| ++..|++..+..- |.++.+.....-.. +. .+.|. ..+++|++++||+|+
T Consensus 144 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~~-~~~g~------~~d~~eav~~aDvvy 208 (304)
T 3r7f_A 144 TFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-EE-NTFGT------YVSMDEAVESSDVVM 208 (304)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-TT-CSSCE------ECCHHHHHHHCSEEE
T ss_pred CCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-ch-hhcCc------cCCHHHHhCCCCEEE
Confidence 4788 999999975 6999999999887 88877765432111 10 12232 468999999999998
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
...
T Consensus 209 t~~ 211 (304)
T 3r7f_A 209 LLR 211 (304)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.53 Score=46.26 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=44.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~--~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|.|+| .|.+|.+++..|.+. |++|++..|. +...+ .. ++.. .|-+..+..++++++|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 7999999 699999999999998 9998877776 22222 11 3321 11111224567789999998754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=88.85 E-value=1.4 Score=46.19 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=37.6
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~ 163 (583)
.| ++|.|+|. |.+|.+.++-++.. |.++++..+ ++...+.+++.|..
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~-~~~~~~~~~~lGa~ 267 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVS-SAQKEAAVRALGCD 267 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCC
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCC
Confidence 45 89999998 99999999999987 888776654 44557788888864
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=0.38 Score=49.73 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=31.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
..+.| +||+|||.|..|..+++.+++. |+++++.+..
T Consensus 10 ~~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~ 46 (389)
T 3q2o_A 10 IILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPT 46 (389)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 34677 9999999999999999999988 9998776543
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.71 E-value=1.2 Score=45.86 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=50.2
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.|+| .||++||= +++..|++..+..- |.++.+.....- ...+.....++.. ..+++|+++++|+|+.
T Consensus 151 ~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 151 GLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALYT 219 (301)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEEE
T ss_pred CcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEEe
Confidence 4788 89999997 79999999999887 888877655421 1111111123554 5789999999999998
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
.+=
T Consensus 220 ~~~ 222 (301)
T 2ef0_A 220 DVW 222 (301)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.85 Score=45.84 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=61.0
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-HHcCcee-cCCCcCCHhhhhc-----cCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTE-ENGTLGDIYETIS-----GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-~~~G~~~-~d~t~~d~~Eav~-----~AD 180 (583)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..++ +...+.+ ++.|... -+....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 45 89999999 99999999999988 8887665554 3445666 6777631 0111123333332 479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+||-++.. +.++.....++++-.++...
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence 99998874 35666667788776655543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.84 Score=45.82 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=60.1
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav------~~AD 180 (583)
.| ++|.|+| .|.+|.+.++-++.. |.+|++..+. +...+.+++.|... -+....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 46 8999999 899999999999988 8887665554 44567777877531 011112232322 2578
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... .+....+.++++-.++..
T Consensus 212 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 212 VVYDGVGQD----TWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp EEEESSCGG----GHHHHHTTEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHHhcCCCEEEEE
Confidence 999888863 344555667776655544
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=88.62 E-value=0.56 Score=47.49 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.++| ++|.|||.|..|..-+..|.+. |.+|+|....
T Consensus 10 ~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap~ 45 (274)
T 1kyq_A 10 QLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSPD 45 (274)
T ss_dssp CCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEEE
T ss_pred EcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 4688 9999999999999999999998 8887776543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=1.5 Score=46.39 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=40.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc-----eEEEEecCCccc----HHHHH--HcCcee--cC-CCcCCHhhhh
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFTE--EN-GTLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~-----~ViVg~r~~s~s----~~~A~--~~G~~~--~d-~t~~d~~Eav 176 (583)
.||+||| .|.+|.+++..|... ++ .+++.+-..... .-.+. .++... .+ ....+..+++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7899999 799999999999876 43 244432211121 11222 222210 00 0023457889
Q ss_pred ccCCeEEEec
Q 007951 177 SGSDLVLLLI 186 (583)
Q Consensus 177 ~~ADIVILav 186 (583)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999963
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.60 E-value=0.68 Score=44.71 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=53.6
Q ss_pred hhhcCCCEEEEEcc-ch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
..++| |++.|.|. |. +|.++++.|.+. |.+|++..|..++..+...+. . + ....++.+
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~l--~----------~-~~~~~~~~ 77 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHERRLGETRDQL--A----------D-LGLGRVEA 77 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------T-TCSSCEEE
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHH--H----------h-cCCCceEE
Confidence 34778 99999998 85 999999999998 999887776543322222111 1 0 00112222
Q ss_pred Ee---ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 184 La---vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+. ..++...++++++...+.+=.+|+..+|+
T Consensus 78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 22 23444556777776555333467777775
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.59 E-value=1.6 Score=44.22 Aligned_cols=92 Identities=17% Similarity=0.056 Sum_probs=59.8
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCC-cCCHhhhhc-----cCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGT-LGDIYETIS-----GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t-~~d~~Eav~-----~AD 180 (583)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+.. ...+.+++.|... -|-. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGE-GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECST-THHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCH-HHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 46 89999999 89999999999987 88877666544 3456777777531 0111 123333333 479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||.++... ..++...+.|+++-.|+..
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 999888742 3455666677776554433
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=0.72 Score=46.42 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~AD 180 (583)
.| ++|.|+| .|.+|.+.++-++.. |.+|++..+. ++..+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 56 8999999 899999999999988 8887665553 455678888886320 11112332322 2479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... .++.....++++-.++..
T Consensus 220 ~vid~~g~~----~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 220 ASFDSVGKD----TFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEEECCGGG----GHHHHHHHEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHHhccCCEEEEE
Confidence 999998864 344445566776655544
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.48 E-value=1 Score=47.22 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=47.8
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHc--------CceecCCCcCCHhh
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA--------GFTEENGTLGDIYE 174 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~--------G~~~~d~t~~d~~E 174 (583)
|+| .||++||=+ ++..|++..+..- |.++.+.-.. ++...+.+++. ++.. +.+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 588 999999976 6788888888776 8887776543 22223334332 2332 568999
Q ss_pred hhccCCeEEEec
Q 007951 175 TISGSDLVLLLI 186 (583)
Q Consensus 175 av~~ADIVILav 186 (583)
++++||+|+.-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.76 Score=46.05 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=62.9
Q ss_pred hcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCC-HhhhhccCCeEEE
Q 007951 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD-IYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d-~~Eav~~ADIVIL 184 (583)
-.| .+|.|+| .|.+|...++-++.. |.+|++.. .. +..+.+++.|... -+....+ ..+.+...|+||-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~-~~-~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTA-SK-RNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEE-CH-HHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEe-cc-chHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 356 8999997 999999999999987 88776554 32 3478888888742 0111223 5566678999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++..... ......++++-.++..
T Consensus 222 ~~g~~~~----~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 222 LVGGDVG----IQSIDCLKETGCIVSV 244 (321)
T ss_dssp SSCHHHH----HHHGGGEEEEEEEEEC
T ss_pred CCCcHHH----HHHHHhccCCCEEEEe
Confidence 9886433 4555677776655544
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=88.45 E-value=1.1 Score=48.85 Aligned_cols=75 Identities=21% Similarity=0.101 Sum_probs=49.3
Q ss_pred hhhcCCCEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
-+|++ ++|-|||.|-.|.+ +|+-|++. |++|.+.+... +...+..++.|+...-+ .+.++...++|+||
T Consensus 15 ~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV 85 (524)
T 3hn7_A 15 LYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVV 85 (524)
T ss_dssp ----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEE
T ss_pred eeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEE
Confidence 46777 99999999999996 78888888 99988776653 23344556678764211 23344446799999
Q ss_pred Ee--ccch
Q 007951 184 LL--ISDA 189 (583)
Q Consensus 184 La--vpd~ 189 (583)
+. +|+.
T Consensus 86 ~Spgi~~~ 93 (524)
T 3hn7_A 86 VGNAMKRG 93 (524)
T ss_dssp ECTTCCTT
T ss_pred ECCCcCCC
Confidence 84 5543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.45 E-value=1.2 Score=45.02 Aligned_cols=92 Identities=17% Similarity=0.134 Sum_probs=59.2
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccC
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~A 179 (583)
-+| ++|.|+|.| .+|.+.++-++.. |.+|++..+.. +..+.+++.|.... +....+..+.+ ...
T Consensus 143 ~~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 143 QRN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNN-KHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 356 899999998 8999999999887 88876665543 45677888776320 11112333322 257
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+||-++........ ...++++-.++..
T Consensus 215 Dvvid~~g~~~~~~~----~~~l~~~G~iv~~ 242 (340)
T 3gms_A 215 DAAIDSIGGPDGNEL----AFSLRPNGHFLTI 242 (340)
T ss_dssp EEEEESSCHHHHHHH----HHTEEEEEEEEEC
T ss_pred cEEEECCCChhHHHH----HHHhcCCCEEEEE
Confidence 999988886544332 3566676655544
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=88.41 E-value=0.37 Score=49.93 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=52.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcC-CceEEEEecCCc--ccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~-G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILav 186 (583)
+||+|+| .|.+|..+.+.|.++ +. .++++...+..+ +... -.|... .+.+. .+..+++|+||+|+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~----~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~a~ 76 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER----DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFFAA 76 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT----TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEEcC
Confidence 6899999 899999999988754 11 234443332211 1100 011110 01111 12357899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|.....++.+... +.|..+++.++
T Consensus 77 g~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 77 AAEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp CHHHHHHHHHHHH---HTTCEEEETTC
T ss_pred CcHHHHHHHHHHH---HCCCEEEEeCC
Confidence 9887777666543 45777776655
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=1 Score=45.83 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=57.9
Q ss_pred cCCCEEEEEccchhHHHH-HHHH-HHhhhhhcCCce-EEEEecCCcc---cHHHHHHcCceecCCCcCCHhhhhc----c
Q 007951 109 NGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETIS----G 178 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~-A~nL-rdsl~~~g~G~~-ViVg~r~~s~---s~~~A~~~G~~~~d~t~~d~~Eav~----~ 178 (583)
++ .+|.|+|.|.+|... ++-+ +.. |.+ |++..+. +. ..+.+++.|...-+....+..+ +. .
T Consensus 172 ~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg 242 (357)
T 2b5w_A 172 DP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRR-DRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQ 242 (357)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECC-CSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCC-cccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCC
Confidence 45 789999999999999 8887 666 876 6655544 33 5678888897531111122333 32 4
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+||-++.... .+++....++++-.++..
T Consensus 243 ~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 243 MDFIYEATGFPK---HAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 799999987542 344445556665555443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=0.56 Score=48.17 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=56.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceec-CCCcCC---HhhhhccCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~-d~t~~d---~~Eav~~ADIVI 183 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..+.. ...+.+. +.|.... + ..+ ..++....|+||
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~-~~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSP-SKKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCG-GGHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 67 8999999999999999999887 88876655543 4455655 6775310 1 112 223334689999
Q ss_pred Eeccch-HHHHHHHHHHhcCCCCcEEEE
Q 007951 184 LLISDA-AQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 184 Lavpd~-a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
-++... ..... .+.++++-.++.
T Consensus 257 d~~g~~~~~~~~----~~~l~~~G~iv~ 280 (366)
T 1yqd_A 257 DTVSAVHPLLPL----FGLLKSHGKLIL 280 (366)
T ss_dssp ECCSSCCCSHHH----HHHEEEEEEEEE
T ss_pred ECCCcHHHHHHH----HHHHhcCCEEEE
Confidence 998743 33333 344555544443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=1.1 Score=45.87 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~ADI 181 (583)
.| ++|.|+| .|.+|...++-++.. |.+|++..+. +...+.+++.|.... +....+..+.+. ..|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 46 8999999 799999999999987 8887655543 445677778886320 111123333332 4799
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
||-++... .++...+.++++-.++...
T Consensus 235 vid~~g~~----~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 235 VYESVGGA----MFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEECSCTH----HHHHHHHHEEEEEEEEECC
T ss_pred EEECCCHH----HHHHHHHHHhcCCEEEEEe
Confidence 99998863 4555556666665555443
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.79 Score=46.53 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=59.0
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc------cCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~------~AD 180 (583)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. ++..+.+++.|...- +.. .+..+.+. ..|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 46 89999998 99999999999988 8887665554 445678888776420 111 23333221 589
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... .+......++++-.++..
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 999988864 344555667776655443
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=88.17 E-value=0.95 Score=48.59 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=49.3
Q ss_pred hcCCCEEEEEc-----cc---hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCc--eecCCCc
Q 007951 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGTL 169 (583)
Q Consensus 108 l~gikkIgIIG-----~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~--~~~d~t~ 169 (583)
|+| .||+||| +| ++..|++..+..- |.+|.+....+ +...+. +.+.|. .. +
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~----~ 254 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTK----T 254 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEE----E
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEE----E
Confidence 788 8999997 24 4999999998877 88887776542 222222 345664 32 5
Q ss_pred CCHhhhhccCCeEEEec
Q 007951 170 GDIYETISGSDLVLLLI 186 (583)
Q Consensus 170 ~d~~Eav~~ADIVILav 186 (583)
.+++|++++||+|+.-+
T Consensus 255 ~d~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 255 NSMAEAFKDADVVYPKS 271 (418)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhcCCCEEEEcc
Confidence 78999999999999865
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=0.84 Score=47.89 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=51.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEe-cCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~-r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+||||+| .|.+|.-+.+.|.... ++ .+.... ++..+.........+...+ ..+.++ .+++|+||.|+
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~-----~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~--~~~~~~-~~~~DvVf~a~ 73 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEER-----DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQD--AFDLEA-LKALDIIVTCQ 73 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-----GGGGSEEEEEESSSTTSBCCGGGTCCCBCEE--TTCHHH-HHTCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhcC-----CCCeEEEEEEEeCCCCCCccccCCCceEEEe--cCChHH-hcCCCEEEECC
Confidence 6899999 9999999999444320 32 332222 2111111000001111100 112333 57899999999
Q ss_pred cchHHHHHHHHHHhcCCCCc--EEEEecC
Q 007951 187 SDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~Ga--iL~~a~G 213 (583)
|.....++.+.+. +.|. +|++.++
T Consensus 74 g~~~s~~~a~~~~---~~G~k~vVID~ss 99 (367)
T 1t4b_A 74 GGDYTNEIYPKLR---ESGWQGYWIDAAS 99 (367)
T ss_dssp CHHHHHHHHHHHH---HTTCCCEEEECSS
T ss_pred CchhHHHHHHHHH---HCCCCEEEEcCCh
Confidence 9888877777654 3464 7777765
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.59 Score=47.38 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=42.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc-------eEEEEecCC--cccHHHHH--Hc---CceecCCC-cCCHhhh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEAR--AA---GFTEENGT-LGDIYET 175 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~-------~ViVg~r~~--s~s~~~A~--~~---G~~~~d~t-~~d~~Ea 175 (583)
+||.|+|. |.+|.+++..|... |+ +|++.++.. .+....+. .. .+.. +-. ..+..++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~-di~~~~~~~~a 77 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA-GLEATDDPKVA 77 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE-EEEEESCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC-CeEeccChHHH
Confidence 68999996 99999999999887 64 665544432 11111111 11 1110 000 2456788
Q ss_pred hccCCeEEEec
Q 007951 176 ISGSDLVLLLI 186 (583)
Q Consensus 176 v~~ADIVILav 186 (583)
++++|+||.+.
T Consensus 78 ~~~~D~Vih~A 88 (327)
T 1y7t_A 78 FKDADYALLVG 88 (327)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 89999999863
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=88.04 E-value=1.2 Score=45.91 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=51.3
Q ss_pred hhcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHcCceecCCCcCCHhhhhccC
Q 007951 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~G~~~~d~t~~d~~Eav~~A 179 (583)
.|+| .||++||= |++..|++..+..- .|.++.+.... ++...+.+++.|.... .+.+++|++++|
T Consensus 151 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (310)
T 3csu_A 151 RLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 222 (310)
T ss_dssp CSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTTC
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 4788 89999998 58999999888642 17787776543 2223356667775310 146899999999
Q ss_pred CeEEEec
Q 007951 180 DLVLLLI 186 (583)
Q Consensus 180 DIVILav 186 (583)
|+|+...
T Consensus 223 Dvvyt~~ 229 (310)
T 3csu_A 223 DILYMTR 229 (310)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999865
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=88.01 E-value=1.3 Score=43.11 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=52.9
Q ss_pred hcCCCEEEEEccc---hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+... .+.+.+. +.. .....-..-.+|+
T Consensus 4 l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~~-~~~~~~~-~~~----~~~~~~~~~~~Dv--- 67 (256)
T 4fs3_A 4 LEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKERS-RKELEKL-LEQ----LNQPEAHLYQIDV--- 67 (256)
T ss_dssp CTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHH-HGG----GTCSSCEEEECCT---
T ss_pred CCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCcEEEEEccC---
Confidence 788 999999975 3999999999998 9998888776433 3332221 010 0000000112332
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 68 -~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 68 -QSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp -TCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 34555567777776655333356666775
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=87.97 E-value=1.7 Score=46.58 Aligned_cols=95 Identities=18% Similarity=0.137 Sum_probs=64.6
Q ss_pred hcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-------------Ccee
Q 007951 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GFTE 164 (583)
Q Consensus 108 l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-------------G~~~ 164 (583)
++| ++|+|.|+- +-...++..|.+. |.+|.+.+..-.. .+..... ++..
T Consensus 327 ~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 398 (467)
T 2q3e_A 327 VTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLVTI 398 (467)
T ss_dssp CTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHEEE
T ss_pred cCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCceee
Confidence 678 999999985 3667778888877 8888876654221 1110111 2332
Q ss_pred cCCCcCCHhhhhccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 165 ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 165 ~d~t~~d~~Eav~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.+..|++++||+|+++|.-.....+ ++++...|+...+|.|.-++
T Consensus 399 ----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 399 ----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp ----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred ----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 34678899999999999998777543 45677777765557777654
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=87.96 E-value=1.3 Score=46.70 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=54.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEE-E-ec-CCcccHHHH-------------HHcCceecCCCcCCHhh
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-G-LR-KGSRSFAEA-------------RAAGFTEENGTLGDIYE 174 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViV-g-~r-~~s~s~~~A-------------~~~G~~~~d~t~~d~~E 174 (583)
.|||||| .|..|.-+.+-|.+. . ..++.. . .+ ...+..... ...-+.. .+..+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h-p----~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~~ 89 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH-P----EFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPEG 89 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-S----SEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSCT
T ss_pred cEEEEECCCChHHHHHHHHHHcC-C----CceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchhh
Confidence 6899999 699999998876654 1 235432 2 22 222333222 1111111 12221
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
.++++|+||+|+|.....++.+++. +.|..|+|.++
T Consensus 90 ~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 90 NFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp TGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred hcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 4678999999999988888887764 46888887765
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=87.95 E-value=1.1 Score=48.76 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=64.6
Q ss_pred hhcCCCEEEEEccc----------hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh
Q 007951 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav 176 (583)
.++| ++|+|.|+- +-...++..|.+. |.+|.+.+..-.. . .++.. ..+..+++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 4578 999999973 3466778888887 8888877654321 0 11221 35788999
Q ss_pred ccCCeEEEeccchHHHHH-HHHHHhcCC-CCcEEEEecCc
Q 007951 177 SGSDLVLLLISDAAQADN-YEKIFSCMK-PNSILGLSHGF 214 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~V-l~eI~~~Lk-~GaiL~~a~G~ 214 (583)
++||+|+++|.-....++ ++.+...|+ ++.+|.|.-++
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~ 452 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNV 452 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSC
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCC
Confidence 999999999997776542 456777777 36788888765
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=87.89 E-value=1.4 Score=42.88 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCc--eecCCCcCCHhhhh--ccCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF--TEENGTLGDIYETI--SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~--~~~d~t~~d~~Eav--~~AD 180 (583)
.+ ++|.-||+|.- .++..+.+. |.+ +++.+.++...+.|++ .|+ .. ...+..+.+ ...|
T Consensus 120 ~~-~~VLDiGcG~G--~l~~~la~~------g~~-v~gvDi~~~~v~~a~~n~~~~~~~v~~---~~~d~~~~~~~~~fD 186 (254)
T 2nxc_A 120 PG-DKVLDLGTGSG--VLAIAAEKL------GGK-ALGVDIDPMVLPQAEANAKRNGVRPRF---LEGSLEAALPFGPFD 186 (254)
T ss_dssp TT-CEEEEETCTTS--HHHHHHHHT------TCE-EEEEESCGGGHHHHHHHHHHTTCCCEE---EESCHHHHGGGCCEE
T ss_pred CC-CEEEEecCCCc--HHHHHHHHh------CCe-EEEEECCHHHHHHHHHHHHHcCCcEEE---EECChhhcCcCCCCC
Confidence 45 89999999993 344455555 665 5677776666666554 342 21 023444433 3579
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+...+......+++++...|+||..++++
T Consensus 187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998777666778889999999998876654
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=87.82 E-value=0.66 Score=47.91 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=54.1
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhc-CCceEEEEecCCc--ccHHHHHHcCceecCCCcCCH-hhhhccCCeEEEec
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g-~G~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVILav 186 (583)
+||+|+| .|.+|.-+.+.|.+. + ..++++...+..+ +... -.|... .+.+. .+..+++|+||+|+
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a~ 73 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFSA 73 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEECC
Confidence 6899999 999999999988765 1 0235544442211 1110 001110 01111 12346899999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.....+..+.. ++.|..+++.++-
T Consensus 74 g~~~s~~~a~~~---~~~G~~vId~s~~ 98 (336)
T 2r00_A 74 GGELSAKWAPIA---AEAGVVVIDNTSH 98 (336)
T ss_dssp CHHHHHHHHHHH---HHTTCEEEECSST
T ss_pred CchHHHHHHHHH---HHcCCEEEEcCCc
Confidence 998877776654 3568877777653
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.71 Score=46.92 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=47.9
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHH-HcCceecCCCcCC---HhhhhccC
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d---~~Eav~~A 179 (583)
..+++ |+|.|.|. |.+|.+++..|.+. | ++|++..|......+... ..++......+.+ ..++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 35778 99999995 99999999999998 9 888776665332211110 1122210111223 34567789
Q ss_pred CeEEEecc
Q 007951 180 DLVLLLIS 187 (583)
Q Consensus 180 DIVILavp 187 (583)
|+||.+..
T Consensus 101 d~Vih~A~ 108 (377)
T 2q1s_A 101 DYVFHLAT 108 (377)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 99998765
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=87.67 E-value=0.18 Score=50.32 Aligned_cols=69 Identities=29% Similarity=0.220 Sum_probs=43.7
Q ss_pred hhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCC
Q 007951 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (583)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~AD 180 (583)
.+.+++ |+|.|.|. |-+|.+++..|.+. |++|++..|..+. .++......+.+ ..++++++|
T Consensus 14 ~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 14 LVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVS 79 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCS
T ss_pred ccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCC
Confidence 356677 99999997 99999999999998 9988777765433 222110011223 446788999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+||.+..
T Consensus 80 ~vih~A~ 86 (347)
T 4id9_A 80 AVLHLGA 86 (347)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998653
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=1.2 Score=46.08 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=54.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHH---HHHHc-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~---~A~~~- 160 (583)
.+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.+... .+... ...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 467888 9999999999999999999988 76 555553210 11111 11111
Q ss_pred -Cceec--CCCc-CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~~~~--d~t~-~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
++... .... ....+.+++.|+||.++-+......+.+..
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 22110 0001 123567889999999987766666666543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.7 Score=46.54 Aligned_cols=81 Identities=14% Similarity=0.143 Sum_probs=46.1
Q ss_pred ccccchhhhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcC-C---Hhh
Q 007951 100 LFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYE 174 (583)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~-d---~~E 174 (583)
.++.....+++ |+|.|+| .|.+|..++..|.+. .|++|++..|..++........++......+. + ..+
T Consensus 14 ~~~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~ 87 (372)
T 3slg_A 14 AQTQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEY 87 (372)
T ss_dssp ---------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHH
T ss_pred hhhcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHH
Confidence 35555666777 9999999 699999999999875 16788777775443222211123321111122 2 345
Q ss_pred hhccCCeEEEec
Q 007951 175 TISGSDLVLLLI 186 (583)
Q Consensus 175 av~~ADIVILav 186 (583)
+++++|+||.+.
T Consensus 88 ~~~~~d~Vih~A 99 (372)
T 3slg_A 88 HVKKCDVILPLV 99 (372)
T ss_dssp HHHHCSEEEECB
T ss_pred HhccCCEEEEcC
Confidence 778899999754
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=0.74 Score=49.95 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=39.9
Q ss_pred CEEEEEccchhHHHH--HHHHHHhhhhhcCCceEEEEecCCcccHH--------HHHHcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQ--AQNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~--A~nLrdsl~~~g~G~~ViVg~r~~s~s~~--------~A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+.|.+. ...|....+=.+.+.+++. .+.++...+ .+...|....-..+.|..|++++||+
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L-~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~ 79 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYL-MDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADF 79 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEE-ECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEE-ECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCE
Confidence 589999999988553 3333332100111235544 444432221 12223321101124688999999999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||+.+
T Consensus 80 Vi~~~ 84 (477)
T 3u95_A 80 IINTA 84 (477)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 99986
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.36 E-value=2.9 Score=44.92 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=45.6
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 110 gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
+ |+|.|.| .|.+|.+++..|.+. |++|++..|...+. ..+.. |- .....++++++|+||.+..
T Consensus 147 ~-m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d~-~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 P-LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-DP-LNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp C-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-CT-TSCCTTTTTTCSEEEECCC
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-cc-cchhHHhcCCCCEEEECCC
Confidence 5 8999999 699999999999998 99988777764431 11221 11 1234567889999998754
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=87.32 E-value=1.2 Score=45.13 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred eeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 94 ~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
.+...+.|.......+| +||++||+- .....+++. +.++.|..++.. .|..+ ....+
T Consensus 125 ~~~~~d~~~~~~~~~~g-~kV~vIG~f----P~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~ 181 (270)
T 3l5o_A 125 EDRMNDPFIMSQNEVKG-KKVGVVGHF----PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASE 181 (270)
T ss_dssp ----CCHHHHTTTTTTT-SEEEEESCC----TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHH
T ss_pred cccccCchhhhhcccCC-CEEEEECCc----hhHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHH
Confidence 33445677777788899 999999984 345566766 678888776532 23332 23456
Q ss_pred hhhccCCeEEEeccchHHHHHHHHHHhcCCCCc
Q 007951 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNS 206 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga 206 (583)
+++++||+||+.-. ..+-..++.|..+.++..
T Consensus 182 ~~lp~~D~viiTgs-tlvN~Tl~~lL~~~~~a~ 213 (270)
T 3l5o_A 182 FILPECDYVYITCA-SVVDKTLPRLLELSRNAR 213 (270)
T ss_dssp HHGGGCSEEEEETH-HHHHTCHHHHHHHTTTSS
T ss_pred HhhccCCEEEEEee-hhhcCCHHHHHhhCCCCC
Confidence 78999999887532 222234444544444443
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.25 E-value=0.64 Score=47.48 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=59.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcC-CHhhhh-ccCCeEEEe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~-d~~Eav-~~ADIVILa 185 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|...- +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 46 8999999999999999998887 8886655544 445778888886420 10011 222333 368999999
Q ss_pred ccc--hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 ISD--AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 vpd--~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+.. .. .++...+.+++|-.++..
T Consensus 251 ~g~~~~~---~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLTDI---DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCSTTC---CTTTGGGGEEEEEEEEEC
T ss_pred CCCCcHH---HHHHHHHHhcCCCEEEEe
Confidence 875 21 233445566766555433
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.20 E-value=1.3 Score=46.35 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=48.1
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.|+| .||++||= +++..|++..+..- |.++.+..... +...+. +.+.|.... .+.+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5788 99999995 58889998888876 88877765432 222222 344564210 146788 999
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+|+.-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999633
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=0.67 Score=46.13 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=49.0
Q ss_pred chhhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-cCceecCCCcCC---Hhhhhc-
Q 007951 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS- 177 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-~G~~~~d~t~~d---~~Eav~- 177 (583)
.++.+++ |+|.|.|. |-+|.++++.|.+. |++|++..|......+.... .++......+.+ ..++++
T Consensus 14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 4678889 99999997 99999999999988 99888777643321110000 122110011233 345666
Q ss_pred -cCCeEEEecc
Q 007951 178 -GSDLVLLLIS 187 (583)
Q Consensus 178 -~ADIVILavp 187 (583)
+.|+||.+..
T Consensus 87 ~~~D~vih~A~ 97 (330)
T 2pzm_A 87 FKPTHVVHSAA 97 (330)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 7899888754
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.16 E-value=1.2 Score=47.42 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=49.3
Q ss_pred hhcCCCEEEEEcc-----c---hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHH----HHHHcCceecCCCcC
Q 007951 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGFTEENGTLG 170 (583)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~----~A~~~G~~~~d~t~~ 170 (583)
-|+| +||+|||. | ++..|++..+..- |.++.+.... .+...+ .|.+.|.... .+.
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 3678 89999984 4 7889998888776 8888776554 222222 2345564310 157
Q ss_pred CHhhhhccCCeEEEec
Q 007951 171 DIYETISGSDLVLLLI 186 (583)
Q Consensus 171 d~~Eav~~ADIVILav 186 (583)
|+.|++++||+|+.-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 8999999999998765
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=87.12 E-value=0.38 Score=50.65 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=53.5
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEecC--CcccHHHHHHcCceecCCCcCCH-hhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~-~Eav~~ADIVIL 184 (583)
+||+||| .|..|.-+.+-|.+. ++ ++...... ..+... -.|... .+.+. .+.++++|+||+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~---~~~~~~~~~~~~~Dvvf~ 70 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDI---TIEETTETAFEGVDIALF 70 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEECCTTTTTTCSEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCc---eEeeCCHHHhcCCCEEEE
Confidence 6899999 899999999877765 44 33222211 111111 011110 01111 234678999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+|.....+..+.+. +.|..|+|.++-
T Consensus 71 a~~~~~s~~~a~~~~---~~G~~vIDlSa~ 97 (366)
T 3pwk_A 71 SAGSSTSAKYAPYAV---KAGVVVVDNTSY 97 (366)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CCChHhHHHHHHHHH---HCCCEEEEcCCc
Confidence 999888777777653 468888877663
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=4.1 Score=41.46 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=45.7
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCceecCCC-cCC---HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGT-LGD---IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~~d~t-~~d---~~Eav~~ADIVIL 184 (583)
|+|.|+| .|.+|.++++.|.+. |++|++..|..++....... .++...... +.+ +.++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 7899999 599999999999988 88887777764432111111 133211111 122 4567889999997
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+..
T Consensus 80 ~a~ 82 (352)
T 1xgk_A 80 NTT 82 (352)
T ss_dssp CCC
T ss_pred cCC
Confidence 664
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.91 E-value=1.1 Score=45.66 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=59.4
Q ss_pred cCCCEEEEE-ccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 007951 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (583)
Q Consensus 109 ~gikkIgII-G~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~ADI 181 (583)
.| ++|.|+ |.|.+|.+.++-++.. |.+|++..+. ++..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 45 799999 6899999999999988 9887665544 445677777776320 111123333332 5899
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
||-++.... +......++++-.++..
T Consensus 239 vid~~g~~~----~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 239 ILDMIGAAY----FERNIASLAKDGCLSII 264 (353)
T ss_dssp EEESCCGGG----HHHHHHTEEEEEEEEEC
T ss_pred EEECCCHHH----HHHHHHHhccCCEEEEE
Confidence 999988653 44445566666555444
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=86.87 E-value=1.5 Score=44.32 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=58.6
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh----c--cC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----S--GS 179 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav----~--~A 179 (583)
-.| .+|.|+|.|.+|...++-++.. | .+|++ .+.+++..+.+++.|...- +. ..+..+.+ . ..
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~-~~~~~~~~~~~~~lGa~~~i~~-~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVIA-VDLDDDRLALAREVGADAAVKS-GAGAADAIRELTGGQGA 240 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEE-EESCHHHHHHHHHTTCSEEEEC-STTHHHHHHHHHGGGCE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-EcCCHHHHHHHHHcCCCEEEcC-CCcHHHHHHHHhCCCCC
Confidence 346 8999999999999988888765 4 45544 4444566788899887421 10 01222222 1 68
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+||-++.... .++.....++++-.++..
T Consensus 241 d~v~d~~G~~~---~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFVGAQS---TIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred eEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 99999998652 344444556666555544
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=86.84 E-value=0.64 Score=49.75 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHH-hhhhhcCCceEEEEecC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrd-sl~~~g~G~~ViVg~r~ 149 (583)
++| ++|+|+|+|++|..+|+.|+. . |.+|+...+.
T Consensus 210 l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 210 LKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred cCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 889 999999999999999999988 6 8887655454
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=4.3 Score=41.60 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=60.0
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhhc-----cCC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS-----GSD 180 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav~-----~AD 180 (583)
-.| .+|.|+|. |.+|...++-++.. |.+|++.. +++..+.+++.|... -+....+..+.+. ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC--SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE--CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe--CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 467 89999999 89999999999887 88766543 355678999998742 0111123333332 389
Q ss_pred eEEEeccchHHHHHHHHHHhcC-CCCcEEEEec
Q 007951 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSH 212 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~L-k~GaiL~~a~ 212 (583)
+||-++.... .++.....+ ++|-.++...
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESS
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEe
Confidence 9999988643 233334445 4555555443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=1.8 Score=45.35 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec-C-CcccHHHHHH----cC------------ceecCCC--c--
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARA----AG------------FTEENGT--L-- 169 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r-~-~s~s~~~A~~----~G------------~~~~d~t--~-- 169 (583)
.||||+|+|.+|.-+.+.|.+. .+++++...+ . +........+ .| +...+.. +
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~ 92 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQ 92 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEe
Confidence 6999999999999999988764 1467655444 2 2111111111 11 0000000 1
Q ss_pred -CCHhhhh---ccCCeEEEeccchHHHHHHHHHHhcCCCCc--EEEEecC
Q 007951 170 -GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (583)
Q Consensus 170 -~d~~Eav---~~ADIVILavpd~a~~~Vl~eI~~~Lk~Ga--iL~~a~G 213 (583)
.++++.- .++|+||.|+|.....+..+ .+++.|+ +|++.++
T Consensus 93 ~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 93 AKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp CSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred cCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 1333321 47999999999876665544 4566777 6665544
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=0.69 Score=47.02 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
||||+|||-|..|..+++.+++. |+++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~ 32 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK 32 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 58999999999999999999998 998877654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=1.5 Score=44.04 Aligned_cols=91 Identities=18% Similarity=0.163 Sum_probs=59.3
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCc-CCHhhhhc-----cCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTL-GDIYETIS-----GSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~-~d~~Eav~-----~AD 180 (583)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+. +...+.+++.|... -|... .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 45 89999998 99999999999988 8887765554 34456667777521 01111 23333332 479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||.++... .++.....+++|-.++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 217 CYFDNVGGE----FLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEESSCHH----HHHHHHTTEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHHHhcCCEEEEE
Confidence 999888753 355566677776655544
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.65 E-value=1.9 Score=46.45 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=65.2
Q ss_pred hhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCccc--HHHHHH-cC-------ceecC
Q 007951 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (583)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s--~~~A~~-~G-------~~~~d 166 (583)
.++| ++|+|.|+ .+-...++..|.+. |.+|.+.+..-... .....+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 3678 99999997 34566677777777 88887766542211 112221 11 221
Q ss_pred CCcCCHhhhhccCCeEEEeccchHHHHH-HHHHHhcCCCCcEEEEecCc
Q 007951 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 167 ~t~~d~~Eav~~ADIVILavpd~a~~~V-l~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.+..|+++++|+|+++|.-.....+ ++++...|+...+|.|.-++
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 449 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLI 449 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSC
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCC
Confidence 35678899999999999997776543 55677777776678888765
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=86.48 E-value=0.94 Score=45.16 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
.| .+|.|+|.|.+|...++-++.. |.+|++.. +++..+.+++.|...- ..+.+++-...|+||-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 56 8999999999999999999888 88776554 4566888899997531 22222222467999988875
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEe
Q 007951 189 AAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
... ......++++-.++..
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICI 228 (315)
T ss_dssp --------TTGGGEEEEEEEEEE
T ss_pred hhH----HHHHHHhcCCCEEEEE
Confidence 432 3445667776655444
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=86.47 E-value=1.4 Score=46.26 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=47.7
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhhhc
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Eav~ 177 (583)
.++| .||++||= +++..|++..+..- |.++.+..... +...+. +.+.|.... .+.|++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5788 99999995 68899999888876 88877765432 222222 344564210 146788 999
Q ss_pred cCCeEEEe
Q 007951 178 GSDLVLLL 185 (583)
Q Consensus 178 ~ADIVILa 185 (583)
++|+|+.-
T Consensus 220 ~aDVVytd 227 (355)
T 4a8p_A 220 GADFLYTD 227 (355)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEec
Confidence 99999963
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=3.5 Score=39.91 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=56.0
Q ss_pred cCCCEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHHc----C----ceecCCCcCCHhhhhccC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGS 179 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G----~~~~d~t~~d~~Eav~~A 179 (583)
.+ .+|.-||||.-+.+ ..|. .. |.+ +++.+.++...+.|++. | +... ..+..+.-...
T Consensus 64 ~~-~~vLDiGcG~G~~~--~~l~~~~------~~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~f 130 (287)
T 1kpg_A 64 PG-MTLLDVGCGWGATM--MRAVEKY------DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPV 130 (287)
T ss_dssp TT-CEEEEETCTTSHHH--HHHHHHH------CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCC
T ss_pred Cc-CEEEEECCcccHHH--HHHHHHc------CCE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCe
Confidence 45 79999999984333 3333 33 555 45677666555555542 2 2110 23444433668
Q ss_pred CeEEEe-----ccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 180 DIVILa-----vpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
|+|+.. +++.....+++++...||||-.+.+
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876 4555667889999999999886553
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=86.32 E-value=0.68 Score=46.51 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+||.|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~------G~~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH------GIKVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 7899999999999999999999 9999888654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=0.45 Score=50.38 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=46.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+++ |+|.|||.|..|.+.|+-|.+. |++|++.+...... ..... .|+....+. ...+.++++|+||+.
T Consensus 3 ~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 3 YQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS 71 (439)
T ss_dssp CTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred CCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence 567 8999999999999999888887 99887776543221 11112 466531111 125666789999986
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=86.24 E-value=0.82 Score=44.77 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=37.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~--ADIVILavp 187 (583)
|+|.|+|. |-+|.++++.|.+. |++|++..|.... .......+.. ..+..+++++ .|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~--~~~~~~Dl~d----~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQN------NWHAVGCGFRRAR--PKFEQVNLLD----SNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEC------------------------CHHHHHHHCCSEEEECC-
T ss_pred CeEEEECCCcHHHHHHHHHHHhC------CCeEEEEccCCCC--CCeEEecCCC----HHHHHHHHHhhCCCEEEECCc
Confidence 89999997 99999999999988 9988776654322 0011111111 1234456654 899998764
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=86.12 E-value=2.5 Score=37.45 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=54.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----Cce---ecCCCcCCHhhhh----c
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFT---EENGTLGDIYETI----S 177 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G~~---~~d~t~~d~~Eav----~ 177 (583)
.+ ++|.-||+|. | .++..+.+.+ .+.+ +++.+.++...+.|++. |+. .- ..+..+.+ .
T Consensus 25 ~~-~~vldiG~G~-G-~~~~~l~~~~----~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 25 PH-ETLWDIGGGS-G-SIAIEWLRST----PQTT-AVCFEISEERRERILSNAINLGVSDRIAV---QQGAPRAFDDVPD 93 (178)
T ss_dssp TT-EEEEEESTTT-T-HHHHHHHTTS----SSEE-EEEECSCHHHHHHHHHHHHTTTCTTSEEE---ECCTTGGGGGCCS
T ss_pred CC-CeEEEeCCCC-C-HHHHHHHHHC----CCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCEEE---ecchHhhhhccCC
Confidence 45 7899999997 3 3444444431 1334 46777766666666542 322 10 12222222 5
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
..|+|++.-+... ..+++++...|+||..+++.
T Consensus 94 ~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 6899997665444 66888999999998876543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=86.06 E-value=1.9 Score=43.60 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=59.3
Q ss_pred cCCCEEEEE-ccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-----ccCCeE
Q 007951 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (583)
Q Consensus 109 ~gikkIgII-G~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-----~~ADIV 182 (583)
.| ++|.|+ |.|.+|.+.++-++.. |.+|++..+ +++..+.+++.|...--....+..+.+ ...|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTAS-RNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECC-SHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 67 899999 7999999999999987 888765544 455678888888642000011233333 247999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|-++.... .++.....++++-.++..
T Consensus 222 ~d~~g~~~---~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 222 FCTFNTDM---YYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EESSCHHH---HHHHHHHHEEEEEEEEES
T ss_pred EECCCchH---HHHHHHHHhccCCEEEEE
Confidence 98887533 334444556666555444
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=85.99 E-value=1.8 Score=38.44 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=58.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCc----eecCCCcCCHhhhh---
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETI--- 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~----~~~d~t~~d~~Eav--- 176 (583)
..+ ++|.-||+|. +.++..+.+. +.+ +++.+.++...+.+++ .|. ... ..+..+.+
T Consensus 32 ~~~-~~vldiG~G~--G~~~~~l~~~------~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~ 98 (192)
T 1l3i_A 32 GKN-DVAVDVGCGT--GGVTLELAGR------VRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEALCKI 98 (192)
T ss_dssp CTT-CEEEEESCTT--SHHHHHHHTT------SSE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHHHTTS
T ss_pred CCC-CEEEEECCCC--CHHHHHHHHh------cCE-EEEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHhcccC
Confidence 355 8999999998 3444555555 444 4566666655666554 332 210 23444423
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
...|+|+..-+......+++++...|+||..+.+.
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEE
Confidence 35799998766566778899999999998765543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=85.82 E-value=4.3 Score=37.36 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=57.9
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc---CceecCCCcCCHhhhhccCCeEEEe
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~---G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.+ .+|.-||+|.- .++..|.+. +.++ ++.+.++...+.+++. .+....+...+.... ...|+|+..
T Consensus 45 ~~-~~vLDiGcG~G--~~~~~l~~~------~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~ 113 (220)
T 3hnr_A 45 SF-GNVLEFGVGTG--NLTNKLLLA------GRTV-YGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVST 113 (220)
T ss_dssp CC-SEEEEECCTTS--HHHHHHHHT------TCEE-EEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEE
T ss_pred CC-CeEEEeCCCCC--HHHHHHHhC------CCeE-EEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEEC
Confidence 56 89999999984 345555555 6664 6777777667777654 232111111111111 678999985
Q ss_pred -----ccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 186 -----ISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 186 -----vpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+++.....+++++...||||-.+.+.
T Consensus 114 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 114 YAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred cchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34444455888999999998876544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=85.81 E-value=1.4 Score=45.71 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEec
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r 148 (583)
.+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 567888 9999999999999999999988 76 5555544
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=0.3 Score=52.02 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=54.9
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
.||.|||. |..|..-+.-++.- |. +|.+.++.. ...|-. .+.+.++||||.++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~---------~~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP---------FDEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC---------CTHHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc---------hhhHhhCCEEEECcC
Confidence 58899999 99999988877766 86 777665431 111322 145679999999998
Q ss_pred chH-HHHHH-HHHHhcC-CCCcEEEEec
Q 007951 188 DAA-QADNY-EKIFSCM-KPNSILGLSH 212 (583)
Q Consensus 188 d~a-~~~Vl-~eI~~~L-k~GaiL~~a~ 212 (583)
-.. .+.++ ++....| |||++|+|++
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 422 22344 3566778 9999999884
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=2.4 Score=44.23 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.+++ ++|.|||+|-.|..++++|... |+ ++.+.+
T Consensus 29 ~~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD 65 (340)
T 3rui_A 29 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 65 (340)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred HHHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEec
Confidence 357888 9999999999999999999988 76 455543
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=85.66 E-value=0.47 Score=49.09 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=29.8
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
+.+ ++|+|||.|..|..+++.+++. |+++++.+.
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~ 43 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDP 43 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 456 8999999999999999999998 998877654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.62 E-value=1.3 Score=44.22 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=57.0
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav------~~AD 180 (583)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ +...+.+++.|... -+....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 45 8999999 799999999999988 8887665554 44456666666531 011111222222 1479
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||.++.+. .++...+.++++-.++..
T Consensus 212 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 212 VVYDSVGRD----TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchH----HHHHHHHHhcCCCEEEEE
Confidence 999888743 344555566666554443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=85.58 E-value=2.7 Score=40.62 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=45.9
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILavp 187 (583)
|||.|+| .|.+|.+++..|.+. .|++|++..|+.++... ....++......+.+ ..++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~~-~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVPD-DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSCG-GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHHH-hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5799999 599999999998864 16788777776443211 112343221111233 4567889999999876
Q ss_pred c
Q 007951 188 D 188 (583)
Q Consensus 188 d 188 (583)
+
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=85.55 E-value=3.9 Score=41.57 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=58.8
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcc---cHHHHHHcCceecCCCcCC--------Hhhhh
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGD--------IYETI 176 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~---s~~~A~~~G~~~~d~t~~d--------~~Eav 176 (583)
.| .+|.|+|. |.+|...++-++.. |.++++..+..++ ..+.+++.|... +.+ ..+..
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~----vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEH----VITEEELRRPEMKNFF 235 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSE----EEEHHHHHSGGGGGTT
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcE----EEecCcchHHHHHHHH
Confidence 45 89999998 99999999988887 8877666554332 346777888642 111 12222
Q ss_pred c---cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 177 S---GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 177 ~---~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
. ..|+||-++..... .+....++++-.++...
T Consensus 236 ~~~~~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 236 KDMPQPRLALNCVGGKSS----TELLRQLARGGTMVTYG 270 (357)
T ss_dssp SSSCCCSEEEESSCHHHH----HHHHTTSCTTCEEEECC
T ss_pred hCCCCceEEEECCCcHHH----HHHHHhhCCCCEEEEEe
Confidence 2 37999999875433 23456777776655543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.55 E-value=2.4 Score=43.41 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=58.7
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHH-hhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrd-sl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~AD 180 (583)
.| .+|.|+| .|.+|...++-++. . |.+|++. ..+++..+.+++.|...- +. ..+..+.+. ..|
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~-~~~~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIAT-ASRPETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEE-CSSHHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEE-eCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCce
Confidence 56 7899999 99999999988886 4 6776554 444556788888886420 11 123333332 579
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++... ..++.....++++-.++..
T Consensus 242 vvid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 999888743 2344455567776655544
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=85.50 E-value=1.1 Score=47.84 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=61.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC----cc-------cHHHHHHcCceecCCCcCCHhh
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR-------SFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~----s~-------s~~~A~~~G~~~~d~t~~d~~E 174 (583)
-++. .||.|+|.|.-|.++|+-|... |. +|++.++++ .+ ....|.... . .....++.|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~--~-~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN--R-EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHS--C-TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccC--c-ccchhhHHH
Confidence 3444 6999999999999999999987 88 887776652 11 112222211 0 112356899
Q ss_pred hhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 175 av~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+++++|++|=+..|... -+++...|+++.+|...+
T Consensus 255 av~~ADV~IG~Sapgl~---T~EmVk~Ma~~pIIfals 289 (398)
T 2a9f_A 255 ALEGADIFIGVSAPGVL---KAEWISKMAARPVIFAMA 289 (398)
T ss_dssp HHHTTCSEEECCSTTCC---CHHHHHTSCSSCEEEECC
T ss_pred HhccCCEEEecCCCCCC---CHHHHHhhCCCCEEEECC
Confidence 99999998876544322 135566688898887554
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=85.24 E-value=0.79 Score=40.84 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=28.1
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.|+|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~------G~~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA------GHQVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCCEEEEECC
Confidence 599999999999999999999 9999887654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.15 E-value=1.6 Score=43.93 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=59.0
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCcee-cCCCc-CCHhhhhc-----cC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTE-ENGTL-GDIYETIS-----GS 179 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~-~d~t~-~d~~Eav~-----~A 179 (583)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ +...+.+. +.|... -+... .+..+.+. ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 46 89999997 99999999999988 8887665544 34456666 567531 01110 12333332 47
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+||-++... .++.....+++|-.++..
T Consensus 227 d~vi~~~g~~----~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 227 DIYFENVGGK----MLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EEEEESSCHH----HHHHHHTTEEEEEEEEEC
T ss_pred cEEEECCCHH----HHHHHHHHHhcCCEEEEE
Confidence 9999988742 456666677776655544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=85.14 E-value=3.1 Score=42.19 Aligned_cols=93 Identities=9% Similarity=-0.004 Sum_probs=56.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCc-----CCHhhhh-----
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTL-----GDIYETI----- 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~-----~d~~Eav----- 176 (583)
-.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.+-..-+... .+..+.+
T Consensus 178 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLG-DPVLICGAGPIGLITMLCAKAA------GACPLVIT-DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEE-ESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhC
Confidence 356 8999999999999999999887 886 5544 4444556677665311000000 1112222
Q ss_pred -ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 177 -SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 177 -~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
...|+||-++.... .++.....+++|-.++..
T Consensus 250 g~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 250 GIEPAVALECTGVES---SIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SCCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 25899999988542 344445566776655543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=85.02 E-value=2.7 Score=45.55 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=48.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-CceecCCCcCCHh----hhhccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY----ETISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G~~~~d~t~~d~~----Eav~~ADIVILav 186 (583)
+.|.|+|+|..|..+++.|.+. |+++++.+ .++...+.+.+. |+..--+...+.+ --+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid-~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVT-DNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEE-SCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 5799999999999999999988 88876654 445556667766 7643211122221 13678999998 5
Q ss_pred cchHH
Q 007951 187 SDAAQ 191 (583)
Q Consensus 187 pd~a~ 191 (583)
+++..
T Consensus 200 ~~D~~ 204 (565)
T 4gx0_A 200 LSDPD 204 (565)
T ss_dssp SCHHH
T ss_pred CCcHH
Confidence 54433
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=85.01 E-value=1.6 Score=47.18 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=28.6
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~Vi 144 (583)
..++| ++|+|.|+|++|...++-|.+. |.+|+
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvV 262 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVV 262 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEE
Confidence 45889 9999999999999999999988 88776
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=84.86 E-value=4 Score=38.19 Aligned_cols=89 Identities=13% Similarity=0.172 Sum_probs=54.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH----cCce----ecCCCcCCHhh---hh
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFT----EENGTLGDIYE---TI 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~----~G~~----~~d~t~~d~~E---av 176 (583)
.++ .+|.-||+|. +.++..|.+. +.+| ++.+.++...+.|++ .|+. .. ..|..+ ..
T Consensus 54 ~~~-~~vLDlGcG~--G~~~~~la~~------~~~v-~~vD~s~~~~~~a~~~~~~~g~~~~v~~~---~~d~~~~~~~~ 120 (204)
T 3njr_A 54 RRG-ELLWDIGGGS--GSVSVEWCLA------GGRA-ITIEPRADRIENIQKNIDTYGLSPRMRAV---QGTAPAALADL 120 (204)
T ss_dssp CTT-CEEEEETCTT--CHHHHHHHHT------TCEE-EEEESCHHHHHHHHHHHHHTTCTTTEEEE---ESCTTGGGTTS
T ss_pred CCC-CEEEEecCCC--CHHHHHHHHc------CCEE-EEEeCCHHHHHHHHHHHHHcCCCCCEEEE---eCchhhhcccC
Confidence 346 8999999998 3344445444 5554 567766665655554 2332 11 233333 23
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
...|+|++.... ... +++++...|+||-.+++.
T Consensus 121 ~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 121 PLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp CCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEE
T ss_pred CCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEE
Confidence 468999976533 233 888899999998876544
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=84.86 E-value=0.86 Score=47.53 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=53.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc---eEEEEecCCc--ccHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d-~~Eav~~ADIVIL 184 (583)
.|||||| .|..|.-+.+-|.+. .+ ++.......+ +.... .|... .+.+ ..+.++++|+||+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~~---~~~~~---~~~~~~~~~~~~~Dvvf~ 69 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLAF---RGQEI---EVEDAETADPSGLDIALF 69 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEEE---TTEEE---EEEETTTSCCTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCceee---cCCce---EEEeCCHHHhccCCEEEE
Confidence 6899999 799999999877664 33 3333221111 11110 11100 0111 1234578999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
|+|.....+..+.+. +.|..|++.++
T Consensus 70 a~~~~~s~~~a~~~~---~~G~~vID~Sa 95 (344)
T 3tz6_A 70 SAGSAMSKVQAPRFA---AAGVTVIDNSS 95 (344)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCC
Confidence 999988887777654 46888888766
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.85 E-value=2.8 Score=40.69 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=32.6
Q ss_pred cccceeeeccccccccchhhhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 88 ~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
|+++..++ |-++.....+++ |+|.|.| .|-+|.++++.|.+. |.+|++..|..
T Consensus 12 ~~~~~~~~---~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~~ 65 (272)
T 1yb1_A 12 GRENLYFQ---GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINK 65 (272)
T ss_dssp ----------------CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred cchhheec---cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcCH
Confidence 44444444 333333455788 9999998 568999999999998 99987776653
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.60 E-value=1.6 Score=43.92 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=56.7
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~AD 180 (583)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. +...+.+++.|.... +....+..+.+ ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVST-EEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 45 89999995 99999999999988 8887665554 444566666664310 11111222222 2478
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||.++... .++.....++++-.++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 217 VVYDSIGKD----TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEECSCTT----THHHHHHTEEEEEEEEEC
T ss_pred EEEECCcHH----HHHHHHHhhccCCEEEEE
Confidence 888888762 344555566665554443
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=84.51 E-value=1.1 Score=47.32 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=44.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVI 183 (583)
.+.| +||+|||-|..|..+++.+++. |+++++.+.. ..+......+.+.. ....| +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d~~-~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLDPD-PASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-TTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-CcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 4567 9999999999999999999998 9988766533 22222222222221 11223 345667899988
Q ss_pred E
Q 007951 184 L 184 (583)
Q Consensus 184 L 184 (583)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.26 E-value=4.2 Score=39.98 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCC-cccHH---HHHHcC-ceecCCCcCC---Hhhhhcc--C
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFA---EARAAG-FTEENGTLGD---IYETISG--S 179 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~---~A~~~G-~~~~d~t~~d---~~Eav~~--A 179 (583)
+|+|.|.| .|-+|.++++.|.+. |++|++..|.. ..... .....+ +......+.+ ..+++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 37899999 699999999999998 99887766532 11111 111122 2110011223 3456777 9
Q ss_pred CeEEEecc
Q 007951 180 DLVLLLIS 187 (583)
Q Consensus 180 DIVILavp 187 (583)
|+||.+..
T Consensus 75 d~vih~A~ 82 (347)
T 1orr_A 75 DSCFHLAG 82 (347)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=84.24 E-value=2.8 Score=40.19 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=53.7
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|+| |++-|.|. |-+|.++++.|.+. |.+|++..+..++..+.+.+.|... .. -.+|+
T Consensus 3 ~l~g-k~vlVTGas~gIG~a~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~~-~~~Dv---- 61 (247)
T 3rwb_A 3 RLAG-KTALVTGAAQGIGKAIAARLAAD------GATVIVSDINAEGAKAAAASIGKKA---------RA-IAADI---- 61 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE---------EE-CCCCT----
T ss_pred CcCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCce---------EE-EEcCC----
Confidence 4788 99999996 57999999999998 9998877665433333333222110 01 12343
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 62 SDPGSVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 33445566777776555333467777775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 583 | ||||
| d1qmga1 | 288 | a.100.1.2 (A:308-595) Class II ketol-acid reductoi | 1e-145 | |
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 7e-93 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 7e-41 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 3e-29 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 9e-05 |
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 288 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 418 bits (1076), Expect = e-145
Identities = 256/287 (89%), Positives = 272/287 (94%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
LEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEG 413
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEG
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEG 120
Query: 414 LPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYS 473
LPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYS
Sbjct: 121 LPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYS 180
Query: 474 EIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDND 533
EIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN
Sbjct: 181 EIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNG 240
Query: 534 APINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 580
APIN DLISNFLSDPVH AI VCAQLRP+VDISV DADFVRPELRQ
Sbjct: 241 APINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 287
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 282 bits (723), Expect = 7e-93
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 144 bits (364), Expect = 7e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 110 bits (277), Expect = 3e-29
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 3/145 (2%)
Query: 295 EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 354
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 414
Y+ + + E+ + + + G + + G Y
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 PAFPMGKIDQTRMWKVGERVRSTRP 439
+ ++GE++R+ P
Sbjct: 122 ---YRRNNAAHPIEQIGEKLRAMMP 143
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.7 bits (95), Expect = 9e-05
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGS 511
G L+ A E L + G++ E + + + M+ G++ M + S A G
Sbjct: 18 GGCVELVKAGFETLVEAGYAPEMAYFE-CLHELKLIVDLMYEGGIANMNYSISNNAEYGE 76
Query: 512 RKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSD 547
P ++ A+ +G+ F+++
Sbjct: 77 YVTGPEVINAESRAAMRNALKRIQ-DGEYAKMFITE 111
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 583 | |||
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 100.0 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 100.0 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.84 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.81 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.78 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.77 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.76 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 99.59 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.51 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.46 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.41 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.32 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.27 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.22 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.12 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.1 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.03 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.02 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.89 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.8 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.79 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.65 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.6 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.59 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.57 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.56 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.5 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.48 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.47 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.45 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.35 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.34 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.33 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.31 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.23 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.22 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.1 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.86 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.86 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.81 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.77 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.53 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.41 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.31 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.2 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.13 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.12 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.12 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.1 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.08 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.07 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.02 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.95 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.94 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.91 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.9 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.87 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.85 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.8 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.78 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.76 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.75 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.75 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.73 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.66 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.66 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.63 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.58 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.56 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.5 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.48 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.46 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.45 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.39 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.36 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.33 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.3 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.25 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.2 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.15 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.13 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.05 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.05 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.94 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.9 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.79 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 95.73 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.61 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.53 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.51 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.42 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.41 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.36 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.3 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.3 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.23 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.07 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.97 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.91 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.87 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.75 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.75 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.6 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.54 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.49 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.44 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 94.41 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.4 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.39 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.36 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 94.04 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.03 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.99 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.92 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 93.86 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.74 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 93.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.55 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.52 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.5 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.29 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.26 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.94 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.89 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 92.75 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.7 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.67 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.17 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 92.03 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.69 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.48 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 91.22 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.17 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.86 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 90.58 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.54 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.52 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 90.25 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.86 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 89.7 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 89.66 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.48 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.4 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 89.38 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 89.37 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 89.15 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 89.11 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 88.95 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.86 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 88.57 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.48 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.44 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.29 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.25 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.2 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 88.18 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 88.16 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.09 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 88.05 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 87.71 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 87.69 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 87.68 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.61 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 87.57 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 87.4 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.38 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 87.37 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 87.3 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.22 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 87.03 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 86.98 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 86.92 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.91 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 86.83 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 86.72 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 86.38 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 86.09 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.05 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 85.92 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.69 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 85.67 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.11 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 85.09 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 85.08 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 85.07 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.95 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.87 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 84.83 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 84.75 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 84.63 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 84.57 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 84.43 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 84.42 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 84.26 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 84.2 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.15 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 84.01 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 83.99 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 83.96 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 83.92 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 83.81 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 83.35 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 83.24 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.18 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 83.03 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 82.31 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 81.85 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 81.63 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 80.95 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 80.81 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 80.61 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 80.59 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.5 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.5 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.49 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 80.32 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 80.19 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 80.05 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.03 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.02 |
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=3.6e-84 Score=654.45 Aligned_cols=288 Identities=89% Similarity=1.367 Sum_probs=282.1
Q ss_pred hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhh
Q 007951 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (583)
Q Consensus 294 f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~ 373 (583)
|++|+++||||||++|||+++++++++|+.++++|++|++||++++|+++++|+++|+++||.+|++++|++++..|-..
T Consensus 1 f~~E~~SDl~GEq~iL~G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~ 80 (288)
T d1qmga1 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAA 80 (288)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHH
T ss_pred CchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred hcccchhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCcchhhhcChHHHHHHHHHccCCCCCCCCCCcchhHH
Q 007951 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGV 453 (583)
Q Consensus 374 ~~~~~~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~gei~~~~~~~~g~ 453 (583)
+...+.|++++|+++|++|+||+|+|+|+++++++||+++++.+++++|++|+||++|++||++||++++++++|||+|+
T Consensus 81 ~~~~~~~~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~em~eI~~temwkvG~~vR~lrpe~~~~~~~~~~~g~ 160 (288)
T d1qmga1 81 YSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGV 160 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSSCSHHHHHHHHHHHTCCTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchhhhhhhcccHHHHHHHHHHhcCCcccccccchHHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHHHHHHHHhhhccC
Q 007951 454 YAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDND 533 (583)
Q Consensus 454 ~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~~~~~~~~~~~~g 533 (583)
|+++|+||||+|+++||+||+||||||+|+++||||||+++||+||++||||||+||+|+|+|||+++++|++|+.|++|
T Consensus 161 ~~~~~~a~~e~l~~~G~~~~~a~~E~~~E~~~~~~~li~~~g~~~M~~~~S~TA~~G~~~~~prf~~~~~~~~l~~i~~G 240 (288)
T d1qmga1 161 YVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNG 240 (288)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTHHHHHTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHcccccchhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHhhhcChHHHHHHHHhccCCcceeecCCCCCcchhhhhcc
Q 007951 534 APINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQG 581 (583)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
+++++.|.+++.+||+|+++.+|++|||++||+|++...+.||||||+
T Consensus 241 ~~a~~~l~en~~~~p~h~~~~~~~~lR~~~~~~vg~~vr~lrp~l~~~ 288 (288)
T d1qmga1 241 APINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 288 (288)
T ss_dssp CCCCHHHHHHHHHCTHHHHHHHHHTTSCSCCCCCCTTCSSSCGGGCCC
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhchHHHHHHHHHHHHhchhhccC
Confidence 999999999999999999999999999999999999999999999986
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=1.1e-55 Score=431.37 Aligned_cols=226 Identities=84% Similarity=1.310 Sum_probs=211.3
Q ss_pred CccccccccchhhhhhhhcccccceeeeccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEe
Q 007951 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (583)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~v~~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~ 147 (583)
++++++||+++|.+++++|+|++|+|++++||+|++++++|||+|||+|||||+||+|+|+|||||-.+.++|++|+||+
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGL 80 (226)
T d1qmga2 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGL 80 (226)
T ss_dssp CCSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999822222467899999
Q ss_pred cCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCC
Q 007951 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (583)
Q Consensus 148 r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p 227 (583)
|.+++||++|+++||.+.+.++.+.+|++++||+|++++||+.|.++|++|.|+|++|++|.|+|||+++|.+...+.||
T Consensus 81 r~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p 160 (226)
T d1qmga2 81 RKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFP 160 (226)
T ss_dssp CTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCC
T ss_pred CCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccC
Confidence 99999999999999986566677899999999999999999999999999999999999999999999998766556789
Q ss_pred CCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCcccccc
Q 007951 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (583)
Q Consensus 228 ~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieTt 293 (583)
+|++|+||+||+||+.||++|++|+.++|.|+|++++++||.|+++++++++|+++||+.++++||
T Consensus 161 ~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 161 KNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.8e-42 Score=324.49 Aligned_cols=169 Identities=36% Similarity=0.581 Sum_probs=161.7
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
.+.+++ |+|+|||||+||+++|+||||| |++|+||+|+++++|++|+++||. +.+++|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 478999 9999999999999999999999 999999999999999999999999 5799999999999999
Q ss_pred eccchHHHHHHH-HHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 185 avpd~a~~~Vl~-eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
++||..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||++++|+|++||+||+.||++|++| +|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~---~I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYN---QVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTT---SSCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEee---eeecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 69999999999999999999984 57999999999999999999999999995 7999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--ccccc
Q 007951 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~~--vieTt 293 (583)
+++||.++++++++++|+++||++| +++||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999986 78886
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.2e-35 Score=272.30 Aligned_cols=139 Identities=18% Similarity=0.363 Sum_probs=126.4
Q ss_pred hhhhhhhhhhhhhhhHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCcchhhhhhhh
Q 007951 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (583)
Q Consensus 294 f~eE~~sDlfgeqtvLsG~~pAlieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~~~m~d~vS~~~~aeyg~~ 373 (583)
|++|+++||||||++|||+++++++++|+++|++||+||.||++|+|++ ++|+++|+++|+.+|+.+||| |++||+|
T Consensus 1 F~~E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he~-~lI~~li~~~Gl~~m~~~iSd--TAeyG~y 77 (145)
T d1np3a1 1 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL-KLIVDLMYEGGIANMNYSISN--NAEYGEY 77 (145)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHSCH--HHHHHHH
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHcc-chhHHHHHHHhHHHHHHHhcc--HHHHHHH
Confidence 6899999999999999999999999999999999999999999999998 579999999999999999997 7789998
Q ss_pred hccc---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCCCc--chhhhcChHHHHHHHHHccCCC
Q 007951 374 YSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPA 440 (583)
Q Consensus 374 ~~~~---~~p~~~~m~e~~~~I~sG~far~~~~e~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~ 440 (583)
..+. ..++++.|++++++|+||+|+|+|+.+++ .|.+.|. ++++++|+||+||++||++|||
T Consensus 78 ~~~~~~~~~~~k~~mk~~l~~IqsG~fak~~i~e~~-----~~~~~l~~~~~~~~~h~IE~VG~~LR~~Mp~ 144 (145)
T d1np3a1 78 VTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGA-----ANYPSMTAYRRNNAAHPIEQIGEKLRAMMPW 144 (145)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHHHHHHHHHSHHHHHHHHHHTTCTT
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcchhhcccchhhH-----HHHHHHHHHHHhhhcCCHHHHHHHHHhhCCC
Confidence 4432 25689999999999999999999999875 3556655 5588999999999999999998
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.84 E-value=4.2e-21 Score=175.78 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=124.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|||||||+|+||.+++.+|.++ |++++++.|..++..+.+.+.|+.. +.++.|++++||+||||+||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999988 8999998887666666677788875 67899999999999999999877
Q ss_pred HHHHHHHHhcCCCCcE-EEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCC
Q 007951 192 ADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~Gai-L~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~s 270 (583)
.++++ .++++++ +++++|+++..+++ .++++.+++|+|||+|... |.|++. ++....++
T Consensus 71 ~~vl~----~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v------------~~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 130 (152)
T ss_dssp HHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHhh----hcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc------------CccceE-EEeCCCCC
Confidence 76654 4667775 56889999888876 5577889999999999988 578888 66688899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 007951 271 GRATNVALGWSVALGSP 287 (583)
Q Consensus 271 geale~a~ala~aIG~~ 287 (583)
.+..+.++.+++.+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999953
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.81 E-value=2.9e-20 Score=169.33 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=118.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|||+|||+|+||.+++++|.++ | +++.+.+|+.++..+.+.+.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999988 6 688877776555555666778764 3344 45778999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
..++++++.+ .++ +|++++|+++..+++ .++.+.+++|+|||+|... |+|++. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~------------~~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh------------cCCcEE-EEeCCCC
Confidence 8888877653 345 467889999888877 6677789999999999987 678988 5667888
Q ss_pred CHHHHHHHHHHHHHhCC
Q 007951 270 DGRATNVALGWSVALGS 286 (583)
Q Consensus 270 sgeale~a~ala~aIG~ 286 (583)
+.+.++.++.+|..+|.
T Consensus 131 ~~~~~~~v~~l~~~~G~ 147 (152)
T d1yqga2 131 SETDRRIADRIMKSVGL 147 (152)
T ss_dssp CHHHHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999999994
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.78 E-value=4.1e-19 Score=162.67 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=125.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCce-EEEEecCCcccHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeccc
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~-ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-av~~ADIVILavpd 188 (583)
+|||+|||+|+||.++|++|+++ |+. -+++.+.+.+..+.+.+.|+.. ....+..+ ...++|+|++|+|+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcch--hhhhhhhhhhccccccccccCCc
Confidence 47899999999999999999998 762 2456677778889999999863 22334443 44589999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEee
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv 265 (583)
+...++++++.++++++++|+++.+.+.. .++. .++ .++|..|| ++|.+. ..+..+++....|.++++++
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~--~~~i~~hP-m~G~e~-sG~~~a~~~Lf~g~~~il~p 145 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILG--KRFVGGHP-IAGTEK-SGVEYSLDNLYEGKKVILTP 145 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHG--GGEECEEE-ECCCSC-CSGGGCCSSTTTTCEEEECC
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhc--cccccccc-cccccc-ccHHHHHHHhhCCCeEEEec
Confidence 99999999999999999999999987532 2322 223 36999999 444431 13344444445688999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC
Q 007951 266 HQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 266 ~qd~sgeale~a~ala~aIG~~ 287 (583)
+...+.++++.++.||+.+|+.
T Consensus 146 ~~~~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 146 TKKTDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.77 E-value=1.9e-18 Score=157.96 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=120.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|||+|||+|+||.++|++|+++ |++|+++ +.++++.+.+.+.|+... ..+..+++++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~-d~~~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGV-SRQQSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEE-ECCchHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 9998665 455667888899987631 34556789999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCCCH
Q 007951 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sg 271 (583)
.++++++.++++++++|+++.+........ .... ..+++..||.. ++.. ..+..+......|.++++++....+.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~--~~~~~~~h~~~-~~~~-~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEP-ASQL--WSGFIGGHPMA-GTAA-QGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHH-HHHH--STTCEEEEECC-CCSC-SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHH-HHHh--hcccccceeee-cccc-cchhhhcccccCCCeEEEEeCCCCCH
Confidence 999999999999999999998775322111 0011 12577888833 2221 11222222223467888999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 007951 272 RATNVALGWSVALGSP 287 (583)
Q Consensus 272 eale~a~ala~aIG~~ 287 (583)
++++.++.+++.+|+.
T Consensus 146 ~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999974
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.76 E-value=8.1e-20 Score=183.48 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=107.7
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccchhHH
Q 007951 442 DLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYI 521 (583)
Q Consensus 442 ei~~~~~~~~g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~f~~~ 521 (583)
++|.|+ |.+.+++.+||++|+++||+|++||||||+|.|++|.|+|.++||+|||++||+||++|+++|.+.+.+.
T Consensus 12 Eq~iL~----G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~~~~~~~~ 87 (288)
T d1qmga1 12 ERGILL----GAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYP 87 (288)
T ss_dssp HHTTTT----HHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 445566 4455599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---HHHHHHhhhccCCccchhhHH----------------hhhcChHHHHHHHHhccCCcceee
Q 007951 522 ---LTQQALVAVDNDAPINGDLIS----------------NFLSDPVHGAIEVCAQLRPTVDIS 566 (583)
Q Consensus 522 ---~~~~~~~~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 566 (583)
+++++|..|.+|+++++-+.. ++.++...++=+...++||.=||+
T Consensus 88 ~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~em~eI~~temwkvG~~vR~lrpe~~~~ 151 (288)
T d1qmga1 88 SMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLG 151 (288)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSSCSHHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchhhhhhhcccHHHHHHHHHHhcCCccccc
Confidence 589999999999887655543 456788889999999999998885
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.59 E-value=3e-16 Score=143.51 Aligned_cols=110 Identities=20% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhhhHHHHhhhcchhhhhccchhhhhhcchhhhccccccccc-hhHHH---HHHHH
Q 007951 452 GVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPR-FDYIL---TQQAL 527 (583)
Q Consensus 452 g~~~~~~~a~~~~l~~~gh~~se~~ne~~~e~~~sl~p~~~~~g~~~m~~~cs~ta~~g~~~w~~~-f~~~~---~~~~~ 527 (583)
|...+++.+++|+|.++||+|..|++||++| +..+.++|+++|+++|+.+||+||++|+++|.|| |+... +++.+
T Consensus 18 Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he-~~lI~~li~~~Gl~~m~~~iSdTAeyG~y~~~~~~~~~~~k~~mk~~l 96 (145)
T d1np3a1 18 GGCVELVKAGFETLVEAGYAPEMAYFECLHE-LKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNAL 96 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHc-cchhHHHHHHHhHHHHHHHhccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445688899999999999999999999999 5999999999999999999999999999999997 44432 67777
Q ss_pred hhhccCC-------------ccchhhHHhhhcChHHHHHHHHhccCCc
Q 007951 528 VAVDNDA-------------PINGDLISNFLSDPVHGAIEVCAQLRPT 562 (583)
Q Consensus 528 ~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (583)
..+++|+ +....+..+.++||++..=+.-..++|=
T Consensus 97 ~~IqsG~fak~~i~e~~~~~~~l~~~~~~~~~h~IE~VG~~LR~~Mp~ 144 (145)
T d1np3a1 97 KRIQDGEYAKMFITEGAANYPSMTAYRRNNAAHPIEQIGEKLRAMMPW 144 (145)
T ss_dssp HHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHSHHHHHHHHHHTTCTT
T ss_pred HHHhcchhhcccchhhHHHHHHHHHHHHhhhcCCHHHHHHHHHhhCCC
Confidence 7777773 3455568889999999987777777773
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.51 E-value=3.9e-14 Score=127.53 Aligned_cols=143 Identities=17% Similarity=0.135 Sum_probs=107.4
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++||+||| +|+||.++|++|+++ |++|.+.++.... +..+.+.++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 37999999 999999999999999 9998887664321 2345678899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecCCC
Q 007951 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~ 269 (583)
...+++.++.+++++|++|+|+++++....+...-..+ .++|..|| ..|+.. .+ -.|...++++..
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP-~~Gp~~-----~~----~~g~~~v~~~g~-- 130 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHP-MFGADI-----AS----MAKQVVVRCDGR-- 130 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEE-CSCTTC-----SC----CTTCEEEEEEEE--
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecc-cCCCcc-----cc----cCCcEEEEecCC--
Confidence 99999999999999999999999887332221111223 36899999 445442 11 145566666555
Q ss_pred CHHHHHHHHHHHHHhCCCccccc
Q 007951 270 DGRATNVALGWSVALGSPFTFAT 292 (583)
Q Consensus 270 sgeale~a~ala~aIG~~~vieT 292 (583)
+.++.+.++.+++.+|+ +++||
T Consensus 131 ~~~~~~~~~~ll~~~Ga-~v~et 152 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGA-KIYQT 152 (152)
T ss_dssp CGGGTHHHHHHHHHTTC-EEEEC
T ss_pred CHHHHHHHHHHHHHhCC-EEEeC
Confidence 45678999999999997 46654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.46 E-value=9.8e-14 Score=126.72 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=106.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
|||||||+|+||.++|++|.++ |++|+++++. ++..+...+.|... ..+..|+++++|+||+++|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 9998877665 44567777788875 67899999999999999996655
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEe
Q 007951 192 A-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (583)
Q Consensus 192 ~-~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliA 264 (583)
. +++. .+.+.+++|++|++.+-.... .+.+ .....++.++-....+ ++. .-. .|-..++
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~g-g~~---~a~-------~g~l~~~- 135 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSG-GEP---KAI-------DGTLSVM- 135 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEES-HHH---HHH-------HTCEEEE-
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccC-Chh---HHh-------cCCeEEE-
Confidence 4 5663 488999999999988665422 2211 1224578888654422 211 111 2333323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 007951 265 VHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 265 v~qd~sgeale~a~ala~aIG~ 286 (583)
+.. +.++++.++.+++.+|.
T Consensus 136 ~gG--~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 136 VGG--DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp EES--CHHHHHHHHHHHHTTEE
T ss_pred EcC--CHHHHHHHHHHHHHhcC
Confidence 343 57889999999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=2.7e-14 Score=128.33 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=87.8
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHHHH
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~~~ 193 (583)
|||||+|+||.+++.+|++. +..+.|+.|+.++..+.+.+.+.. ..+..|+++++|+||+|+||+++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999765 443346777766666666665544 5678899999999999999999888
Q ss_pred HHHHHHhcCCCCcEEEEecC-chhhhhhcccccCCCCccEEEeccCC----CchhhHHhHhccccccCCCceEEEeecCC
Q 007951 194 NYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKG----MGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (583)
Q Consensus 194 Vl~eI~~~Lk~GaiL~~a~G-~~i~~ie~~~i~~p~dv~VI~v~Png----Pg~~vR~lf~~G~e~~G~Gv~aliAv~qd 268 (583)
+++++. +++++|+++++ ..+..++. .....+||.. ++... .. ..+.++ ++..
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~--~~~g- 127 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKAL----EM-----KDQIVF--GLEG- 127 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTGG----GC-----GGGCCE--EECC-
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccchh----hh-----ccCcEE--EEeC-
Confidence 877653 46888776655 44443322 2223344422 22221 11 122333 3343
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 007951 269 VDGRATNVALGWSVALGSP 287 (583)
Q Consensus 269 ~sgeale~a~ala~aIG~~ 287 (583)
+.++++.++.+++.+|+.
T Consensus 128 -d~~~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 128 -DERGLPIVKKIAEEISGK 145 (153)
T ss_dssp -CTTTHHHHHHHHHHHCSC
T ss_pred -CHHHHHHHHHHHHHHCCc
Confidence 457899999999999974
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.32 E-value=9e-12 Score=113.70 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=108.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|+||||||+|+||.++|++|.++ |++|.++++.. +..+.+...|... ..+..|+++.+|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~~-~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQ-SAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECch-hhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 48999999999999999999999 99988776654 4466777788875 6788999999999999999776
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 191 ~~-~Vl~---eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
.. +++. .+.+.+++|++|++.+-.... .+.+ .....+++++- +|-.-++.. -. .|...++
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~~---a~-------~G~l~~~ 136 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAG---AA-------AGTLTFM 136 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHHH---HH-------HTCEEEE
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCccc---cc-------cCCeEEE
Confidence 65 4554 378889999999988776432 2222 12245788885 563333331 12 2444433
Q ss_pred eecCCCCHHHHHHHHHHHHHhCC
Q 007951 264 AVHQDVDGRATNVALGWSVALGS 286 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~ 286 (583)
. .. +.++.+.++.+++.+|.
T Consensus 137 ~-gG--~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 137 V-GG--DAEALEKARPLFEAMGR 156 (162)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEE
T ss_pred e-cC--CHHHHHHHHHHHHHHcC
Confidence 3 33 57789999999999985
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.27 E-value=8e-12 Score=112.62 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=80.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|||||||+|+||.++|++|+++ |++++++++..++. ...+...++. .+..|+++++|+||+++|++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 99988877664433 3333344443 468899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhcccccCCCCccEEEeccCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~---i~~ie~~~i~~p~dv~VI~v~PngP 240 (583)
..+++.++.+.+ ++++++.+... ...+.+ .++ +..++-+.+.++
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~ 115 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGS 115 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSC
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCC
Confidence 999998888776 56777775553 333433 333 345665544444
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.22 E-value=2.4e-11 Score=110.29 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-----------CCCcCCHhhhhccCC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-----------d~t~~d~~Eav~~AD 180 (583)
|||+|||.|+||.++|..|.++ |++|.++.|. ++..+...+.|.... .....+..|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 9998877665 444555555553210 001356889999999
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+||+++|...+..++++|+++++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888775
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.12 E-value=5.1e-11 Score=109.90 Aligned_cols=152 Identities=15% Similarity=0.055 Sum_probs=102.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec----CCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~----d~t~~d~~Eav~~ADIVILavp 187 (583)
.+|||||+|+||.+||++|.++ |++|++++|..++ .+...+.+.... .....+..+++.++|+|++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 5799999999999999999999 9999888776554 444444443210 0113356678889999999999
Q ss_pred chHH-HHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEE
Q 007951 188 DAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (583)
Q Consensus 188 d~a~-~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ali 263 (583)
+... .++++.+.+.+++|++|++.+-.... .+.+ .....++.++ -+|-.-+... =. .|. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~l-dapvsGg~~~---A~-------~G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFV-GSGVSGGEDG---AR-------YGP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HH-------HCC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCcee-ccccccCccc---cc-------CCc-EEE
Confidence 7655 57888999999999999988765422 1211 1223577777 3453323221 11 244 333
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 007951 264 AVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 264 Av~qd~sgeale~a~ala~aIG~~ 287 (583)
+.. +.+..+.++.+++.+|..
T Consensus 142 -~gG--~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGG--NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHHhcc
Confidence 344 345788899999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=9.8e-10 Score=103.37 Aligned_cols=153 Identities=15% Similarity=0.180 Sum_probs=114.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH-----------HHcCceec--------------
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~-------------- 165 (583)
|+||+|||.|.||.++|..+... |++|++.++.. +..+.+ .+.|....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~-~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTE-DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCh-HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 58999999999999999999998 99988776553 222222 22232100
Q ss_pred CCCcCCHhhhhccCCeEEEeccchHH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhcccccCCCCccEEEeccCCCch
Q 007951 166 NGTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~a~--~~Vl~eI~~~Lk~GaiL~-~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~ 242 (583)
-....+..+++++||+|+=++|.+.- .+++.+|.+.++++++|. -++++.+..+.. .....-+++..||--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 00145778899999999999997655 369999999999999875 667788777755 333445899999988887
Q ss_pred hhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 243 ~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++ .-= +.++...+++.++.+.++++.+|..
T Consensus 154 ~~~-------------lVE-Iv~g~~T~~~~i~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 154 VMK-------------LVE-VIKTPMTSQKTFESLVDFSKALGKH 184 (192)
T ss_dssp TCC-------------EEE-EECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred ccc-------------EEE-EcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 731 112 6778899999999999999999964
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.03 E-value=1.5e-09 Score=101.46 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=112.1
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH-----------cCceecC--------CCc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTL 169 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~d--------~t~ 169 (583)
+.|+||+|||.|.||.++|..+..+ |++|++.++. ++..+.+.+ .|..... -..
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 74 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP 74 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec
Confidence 3579999999999999999999988 9998877654 333333222 1111000 001
Q ss_pred CCHhhhhccCCeEEEeccchHHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhcccccCCCCccEEEeccCCCchhhHH
Q 007951 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (583)
Q Consensus 170 ~d~~Eav~~ADIVILavpd~a~~--~Vl~eI~~~Lk~GaiL-~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~ 246 (583)
.+..+.+.+||+|+-++|-+.-. +++.+|.++.+++++| +-++++.+..+.. .....-+++..|+--|.+.
T Consensus 75 ~~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~--- 148 (186)
T d1wdka3 75 TLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM--- 148 (186)
T ss_dssp ESSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT---
T ss_pred ccccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCccc---
Confidence 22234578999999999966553 5999999999999987 4778888877765 3333458999999888877
Q ss_pred hHhccccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 247 LYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 247 lf~~G~e~~G~Gv~al-iAv~qd~sgeale~a~ala~aIG~~ 287 (583)
++.+ +.++...+++.++.+.++++.+|..
T Consensus 149 ------------~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~ 178 (186)
T d1wdka3 149 ------------MPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178 (186)
T ss_dssp ------------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred ------------CCeEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 5678899999999999999999964
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=2.5e-09 Score=98.97 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=73.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceec-----C----CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEE-----N----GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~-----d----~t~~d~~Eav~~ADI 181 (583)
|||+|||.|+||.++|..|.++ |++|.++.|. +++..+.-.+...... . ....+..++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 9998887664 2222222222111100 0 013567889999999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|++++|.+...++++++.+++++..+|+.+.|+
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999988888877776
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=2.6e-09 Score=96.40 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=94.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||||||+|+||.+||++|.+. |+. ++++|..++..+.+.+.+... +..+.+.++|++|+++|+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhh
Confidence 3799999999999999999987 875 578888777666666655542 345667789999999997766
Q ss_pred H-HHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCceEEEeecC
Q 007951 192 A-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (583)
Q Consensus 192 ~-~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~q 267 (583)
. .+...+.+.+++|+++++.+-.... .+.+ ..-..++.++ -+|-.-+.. .=. .|--.+++ ..
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~--~~~~~gi~~l-dapVsGg~~---~A~-------~G~L~~~v-gG 133 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYL-DAPVSGGTS---GAE-------AGTLTVML-GG 133 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEE-ECCEESHHH---HHH-------HTCEEEEE-ES
T ss_pred hhhhhccccccccccccccccccCCHHHHHHHHH--HHHHcCCeEE-eccccCchh---hhc-------cCCEEEEE-eC
Confidence 4 4556799999999998877665322 2222 1113467777 456222211 011 24433333 33
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 007951 268 DVDGRATNVALGWSVALG 285 (583)
Q Consensus 268 d~sgeale~a~ala~aIG 285 (583)
+.+..+.++-++ .++
T Consensus 134 --~~~~~~~~~p~L-~~~ 148 (156)
T d2cvza2 134 --PEEAVERVRPFL-AYA 148 (156)
T ss_dssp --CHHHHHHHGGGC-TTE
T ss_pred --CHHHHHHHHHHH-Hhc
Confidence 567777777766 354
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.80 E-value=7.6e-09 Score=97.04 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=69.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC--------ceecC--CCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEEN--GTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G--------~~~~d--~t~~d~~Eav~~ADI 181 (583)
+||+|||.|++|.++|..|.++ |++|.++.|+.+ ..+.-.+.+ +.... ....+++++++++|+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ 80 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI 80 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSC
T ss_pred ceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCCCCE
Confidence 7899999999999999999998 888888776533 222222222 11000 014567899999999
Q ss_pred EEEeccchHHHHHHHHHHhc-----CCCCc-EEEEecCch
Q 007951 182 VLLLISDAAQADNYEKIFSC-----MKPNS-ILGLSHGFL 215 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~-----Lk~Ga-iL~~a~G~~ 215 (583)
||+++|.+...++++++.++ ++++. +|+.+.|+.
T Consensus 81 iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie 120 (189)
T d1n1ea2 81 ILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 120 (189)
T ss_dssp EEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred EEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence 99999999999999987654 34455 455667873
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.79 E-value=1e-08 Score=93.72 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=96.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-------CCCcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------NGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-------d~t~~d~~Eav~~ADIVIL 184 (583)
|||||||+|+||.++|++|.++ |++|.+++|..++..+..++ |.... .....+....+..++.+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKA-NASAPFAGNLKAFETMEAFAASLKKPRKALI 74 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHH-TTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHc-CCccccccchhhhhhhhHHHHhcccceEEEE
Confidence 7899999999999999999999 99998877665544333333 33210 0001122345567888888
Q ss_pred eccchHH-HHHHHHHHhcCCCCcEEEEecCchh---hhhhcccccCCCCccEEEeccCCCchhhHHhHhccccccCCCce
Q 007951 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (583)
Q Consensus 185 avpd~a~-~~Vl~eI~~~Lk~GaiL~~a~G~~i---~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~~G~e~~G~Gv~ 260 (583)
++++... ..++..+.+.+++|+++++.+-... ..+.+ . ...+++.++-. |-. +.. ..... |.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~-~-l~~~~~~~lda-pv~-g~~--~~a~~-------g~- 140 (178)
T d1pgja2 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLGM-GIS-GGE--EGARK-------GP- 140 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEEE-EEE-SHH--HHHHH-------CC-
T ss_pred eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH-H-HhhcceeEecc-ccc-CCc--chhcC-------Cc-
Confidence 8887655 4688889999999999887754431 12222 1 12456777753 411 211 11222 44
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 261 aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
.++ +.. +.+..+.++.++..+|..
T Consensus 141 ~~m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 141 AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred EEE-eeC--CHHHHHHHHHHHHHHhcc
Confidence 323 333 578999999999999964
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.65 E-value=1.6e-08 Score=94.54 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=74.4
Q ss_pred eccccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh
Q 007951 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (583)
Q Consensus 95 ~~~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E 174 (583)
+.|+|.-......++| ++|||||+|.+|..+++.++.- |.+|+++++.... ..... ..+.+|
T Consensus 27 ~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~----~~~l~e 88 (181)
T d1qp8a1 27 KRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF----TNSLEE 88 (181)
T ss_dssp HTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC----BSCSHH
T ss_pred HcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee----eechhh
Confidence 3455644433345899 9999999999999999999987 9898777654221 12221 457899
Q ss_pred hhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEEEe-cC
Q 007951 175 TISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (583)
Q Consensus 175 av~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~~a-~G 213 (583)
++++||+|++++|-... ..++. +....||+|++|+-+ -|
T Consensus 89 ll~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG 130 (181)
T d1qp8a1 89 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRA 130 (181)
T ss_dssp HHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCG
T ss_pred hhhccchhhcccccccccccccccceeeeccccceEEecccc
Confidence 99999999999996644 34554 688899999988744 44
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=2e-08 Score=89.13 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=70.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCce---ecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~---~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
|||+|||+|+||..+|..|.+. |++|.+..|...+... ....+.. .......+..+.+..+|+||+++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999998 9998887775432110 0001110 0000023455778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEE-EEecCch
Q 007951 189 AAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL-~~a~G~~ 215 (583)
....++++.+.+++.++++| +..-|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 99999999999999988865 4666774
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.59 E-value=2.1e-08 Score=94.64 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=73.6
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...+.| ++|||||+|++|..+|+.++.- |.+|+++++.... ......++.. ..+.+|++++||+|++
T Consensus 44 ~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~--~~~~~~~~~~----~~~l~~ll~~sD~i~~ 110 (193)
T d1mx3a1 44 AARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQR----VSTLQDLLFHSDCVTL 110 (193)
T ss_dssp CCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCEE----CSSHHHHHHHCSEEEE
T ss_pred ceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCcccc--cchhhhcccc----ccchhhccccCCEEEE
Confidence 356889 9999999999999999999876 8898777665333 2333456654 5689999999999999
Q ss_pred eccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 185 LISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 185 avpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
++|-... ..++. +....||+|++|+ .+-|
T Consensus 111 ~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 142 (193)
T d1mx3a1 111 HCGLNEHNHHLINDFTVKQMRQGAFLVNTARG 142 (193)
T ss_dssp CCCCCTTCTTSBSHHHHTTSCTTEEEEECSCT
T ss_pred eecccccchhhhhHHHHhccCCCCeEEecCCc
Confidence 9995443 34554 5778899999887 4444
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.57 E-value=3.9e-08 Score=92.52 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=72.8
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
....++| ++|||||+|.+|..+|+.++.- |.++++.++........ ...+... ..+.++++++||+|+
T Consensus 41 ~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~-~~~~~~~----~~~l~~ll~~sD~v~ 108 (191)
T d1gdha1 41 VGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDE-ASYQATF----HDSLDSLLSVSQFFS 108 (191)
T ss_dssp CBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHH-HHHTCEE----CSSHHHHHHHCSEEE
T ss_pred ccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchh-hcccccc----cCCHHHHHhhCCeEE
Confidence 3567789 9999999999999999988876 88887666543332333 3334442 467899999999999
Q ss_pred EeccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 184 LLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 184 Lavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
+++|-... ..++. +....||+|++|+ .+-|
T Consensus 109 l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 141 (191)
T d1gdha1 109 LNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 141 (191)
T ss_dssp ECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred ecCCCCchHhheecHHHhhCcCCccEEEecCCc
Confidence 99995443 45665 5788999999887 4444
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.56 E-value=4.3e-08 Score=92.76 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=71.0
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...|.| ++|||||+|.+|..+|+.|+.- |.+|++.++.... .....++. ..+..+++++||+|++
T Consensus 38 g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-----~~~l~~~l~~sDii~~ 102 (197)
T d1j4aa1 38 GREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-----VDSLDDLYKQADVISL 102 (197)
T ss_dssp BCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-----CSCHHHHHHHCSEEEE
T ss_pred CccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-----eccccccccccccccc
Confidence 466899 9999999999999999999876 8898766554322 22234544 4689999999999999
Q ss_pred eccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 185 LISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 185 avpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
++|-... ..++. +....||+|++|+ .+-|
T Consensus 103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 134 (197)
T d1j4aa1 103 HVPDVPANVHMINDESIAKMKQDVVIVNVSRG 134 (197)
T ss_dssp CSCCCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred cCCccccccccccHHHHhhhCCccEEEecCch
Confidence 9995443 34554 5778899999877 4444
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.50 E-value=6.4e-08 Score=90.31 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=76.7
Q ss_pred ecccccccc-chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh
Q 007951 95 RGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (583)
Q Consensus 95 ~~~r~~f~~-~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~ 173 (583)
+.|+|.-.. ....+.| ++|||||+|.+|..+|+.++.- |.+|++.++.. ........++. ..+.+
T Consensus 28 ~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~--~~~~~~~~~~~-----~~~l~ 93 (184)
T d1ygya1 28 REHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIE-----LLSLD 93 (184)
T ss_dssp HTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCE-----ECCHH
T ss_pred HhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCC--ChhHHhhcCce-----eccHH
Confidence 445564332 2456788 9999999999999999988765 88877665543 23444555665 46899
Q ss_pred hhhccCCeEEEeccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
|++++||+|++++|-... ..++. +....||+|++|+ .+-|
T Consensus 94 ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG 136 (184)
T d1ygya1 94 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 136 (184)
T ss_dssp HHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCT
T ss_pred HHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecch
Confidence 999999999999995544 44665 6888999999887 4444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.48 E-value=8.1e-08 Score=89.60 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=74.1
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..++| ++|||||+|.+|..+|+.|+.- |.+|++.++.. .........++.. ..+..|++++||+|+++
T Consensus 40 ~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~-~~~~~~~~~~~~~----~~~l~~~l~~sD~v~~~ 107 (188)
T d2naca1 40 YDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW----HATREDMYPVCDVVTLN 107 (188)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----CSSHHHHGGGCSEEEEC
T ss_pred eeccc-cceeeccccccchhhhhhhhcc------CceEEEEeecc-ccccccccccccc----cCCHHHHHHhccchhhc
Confidence 45788 9999999999999999999876 88877665543 3445555566664 57899999999999999
Q ss_pred ccchH-HHHHHH-HHHhcCCCCcEEE-EecC
Q 007951 186 ISDAA-QADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 186 vpd~a-~~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
+|-.. ...++. +....||+|++|+ .+-|
T Consensus 108 ~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 138 (188)
T d2naca1 108 CPLHPETEHMINDETLKLFKRGAYIVNTARG 138 (188)
T ss_dssp SCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred ccccccchhhhHHHHHHhCCCCCEEEecCch
Confidence 99443 345665 6788999999877 4444
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.47 E-value=1.2e-07 Score=82.22 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=59.9
Q ss_pred hhhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcch
Q 007951 301 DIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (583)
Q Consensus 301 DlfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~~ 366 (583)
+.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..++++|+.+.
T Consensus 3 ~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~G-s~~ll~~s~~~~~~L~~~V~Spg 73 (111)
T d1yqga1 3 EKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG-AVALAEQTGEDFEKLQKNVTSKG 73 (111)
T ss_dssp THHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHhcccCcc
Confidence 578889999999999 79999999999999999999999999999 9999999876 99999998753
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.45 E-value=1.8e-06 Score=80.57 Aligned_cols=158 Identities=14% Similarity=0.183 Sum_probs=95.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-------------------HcCceecCCCcCCH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAGFTEENGTLGDI 172 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-------------------~~G~~~~d~t~~d~ 172 (583)
|||+|||+|-+|.++|..|.+. |++|+ +++.+++..+.-. ..+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 7899999999999999999998 99875 6666554333221 122111 14578
Q ss_pred hhhhccCCeEEEeccch----------HHHHHHHHH---HhcCCCCcEEEEecCchhhh--------hhc-ccccCCCCc
Q 007951 173 YETISGSDLVLLLISDA----------AQADNYEKI---FSCMKPNSILGLSHGFLLGH--------LQS-MGLDFPKNI 230 (583)
Q Consensus 173 ~Eav~~ADIVILavpd~----------a~~~Vl~eI---~~~Lk~GaiL~~a~G~~i~~--------ie~-~~i~~p~dv 230 (583)
.+++++||+|++|+|.. ....+++++ ...++++++|++-+-+..+. ++. .......++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999842 223444444 44566788776554332111 111 111223344
Q ss_pred cEEEeccC--CCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCccccc
Q 007951 231 GVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (583)
Q Consensus 231 ~VI~v~Pn--gPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~~vieT 292 (583)
. +..+|- .||..+.+.... +.++. +. .+.+..+.++.+++.+... +++|
T Consensus 151 ~-~~~~PE~~~~G~a~~d~~~~---------~~iVi-G~-~~~~~~~~~~~ly~~i~~~-ii~~ 201 (202)
T d1mv8a2 151 G-VGTNPEFLRESTAIKDYDFP---------PMTVI-GE-LDKQTGDLLEEIYRELDAP-IIRK 201 (202)
T ss_dssp E-EEECCCCCCTTSHHHHHHSC---------SCEEE-EE-SSHHHHHHHHHHHTTSSSC-EEEE
T ss_pred c-chhhhhhhcccchhhhhcCC---------CeEEE-Ee-CCHHHHHHHHHHHHhcCCC-eEec
Confidence 4 446673 556665444332 22221 21 2578889999999998753 5554
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.35 E-value=7.4e-07 Score=86.92 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=80.0
Q ss_pred cCceecCCCcCCHhhhhccCCeEEEeccchH-HHHHHHHHHhcCCCCcEEEEecCchhh---hhhcccccCCCCccEEEe
Q 007951 160 AGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAV 235 (583)
Q Consensus 160 ~G~~~~d~t~~d~~Eav~~ADIVILavpd~a-~~~Vl~eI~~~Lk~GaiL~~a~G~~i~---~ie~~~i~~p~dv~VI~v 235 (583)
.|+.. +.|+.|++++||+||+++|+.. ..+++++|.+++++|++|++.+.++.. .+.+ ..-+++++|+..
T Consensus 127 ~Gv~v----~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~ 200 (242)
T d2b0ja2 127 VGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSY 200 (242)
T ss_dssp GTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEEC
T ss_pred CCCEE----ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECC
Confidence 45554 6789999999999999998654 568999999999999999998876532 2222 122468999999
Q ss_pred ccCCCchhhHHhHhccccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 007951 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (583)
Q Consensus 236 ~PngPg~~vR~lf~~G~e~~G~Gv~aliAv~qd~sgeale~a~ala~aIG~~ 287 (583)
||..+... .|...++ ....+.+.++.++.+++.+|..
T Consensus 201 hp~a~pe~-------------~g~~li~--~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 201 HPGCVPEM-------------KGQVYIA--EGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp BCSSCTTT-------------CCCEEEE--ESSSCHHHHHHHHHHHHHHHSC
T ss_pred CccCcCcc-------------ccceEEe--cCCCCHHHHHHHHHHHHHHCCC
Confidence 99443222 2444433 4457899999999999999964
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.34 E-value=4.5e-07 Score=77.79 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=58.0
Q ss_pred hhhhhhhHhhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCcc
Q 007951 302 IFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (583)
Q Consensus 302 lfgeqtvLsG~~pA----lieAl~d~~Ve~Gl~~e~A~~~~~q~l~Glia~li~e~G~--~~m~d~vS~~ 365 (583)
.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..++++|+.+
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~g-s~~ll~~~~~~p~~l~~~V~Sp 70 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA-SASNLKTSSQSPHDFIDAICSP 70 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHHCCT
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHhccCC
Confidence 47788999999999 57999999999999999999999999999 8999999885 8999999875
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.33 E-value=1.4e-07 Score=89.07 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=69.5
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
...|.| ++|||||+|.+|..+|+.|+.- |.+|+++++..... ....+. ..+.+++++.||+|++
T Consensus 40 ~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~-----~~~l~~l~~~~D~v~~ 103 (199)
T d1dxya1 40 GKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD-----YVSLEDLFKQSDVIDL 103 (199)
T ss_dssp CCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE-----ECCHHHHHHHCSEEEE
T ss_pred cccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh-----HHHHHHHHHhccccee
Confidence 467889 9999999999999999999876 88987766543221 112232 4578999999999999
Q ss_pred eccchHH-HHHHH-HHHhcCCCCcEEE-EecC
Q 007951 185 LISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 185 avpd~a~-~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
++|-... ..++. +....||+|++|+ .+-|
T Consensus 104 ~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 135 (199)
T d1dxya1 104 HVPGIEQNTHIINEAAFNLMKPGAIVINTARP 135 (199)
T ss_dssp CCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred eecccccccccccHHHhhccCCceEEEecccH
Confidence 9995443 34554 5778899999877 5545
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=7.5e-07 Score=82.19 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=76.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-.|.| |+++|||||.+|..+|+.+|.. |.+|++.... +-..-+|..+|+. +.+.+++++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~d-p~~al~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEID-PINALQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecc-cchhHHhhcCceE-----eeehhhhhhhccEEEec
Confidence 34678 9999999999999999999987 9898877655 3334566678998 46899999999999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|..... +=.+..+.||+|++|.-+..|.
T Consensus 87 TGn~~v--I~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDI--ILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSCS--BCHHHHTTCCTTEEEEECSSST
T ss_pred CCCccc--hhHHHHHhccCCeEEEEecccc
Confidence 885432 2236778899999998877774
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=4.3e-07 Score=84.55 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=69.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
..+.+ ++|||||+|.+|..+|+.++.. |.+|+++++...... ..... ..+.+|++++||+|+++
T Consensus 40 ~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~----~~~l~ell~~sDii~i~ 103 (188)
T d1sc6a1 40 FEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ----VQHLSDLLNMSDVVSLH 103 (188)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE----CSCHHHHHHHCSEEEEC
T ss_pred ccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh----hhhHHHHHhhccceeec
Confidence 45788 9999999999999999998876 889887766433211 12222 46899999999999999
Q ss_pred ccch-HHHHHHH-HHHhcCCCCcEEE-EecC
Q 007951 186 ISDA-AQADNYE-KIFSCMKPNSILG-LSHG 213 (583)
Q Consensus 186 vpd~-a~~~Vl~-eI~~~Lk~GaiL~-~a~G 213 (583)
+|-. ....++. +....||+|++|+ .+-|
T Consensus 104 ~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 104 VPENPSTKNMMGAKEISLMKPGSLLINASRG 134 (188)
T ss_dssp CCSSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred ccCCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence 9944 3345665 6788899999877 5555
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.22 E-value=1.6e-06 Score=79.97 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=77.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-.|.| |++.|+|||..|...|+.+|.. |.+|+|...+ +-..-+|.-+||. +.+.+|+++.+|+||.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~D-Pi~alqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecC-chhhHHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 34778 9999999999999999999988 9888886554 4445566778998 57999999999999999
Q ss_pred ccchHHHHHH-HHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl-~eI~~~Lk~GaiL~~a~G~~ 215 (583)
|.... ++ .+....||+|++|.-+..|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 99754 33 36678899999999887775
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.10 E-value=4.5e-06 Score=75.81 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.+++ ++|.|||.|-||..++.+|... |+ ++.+..|..++..+.+.+.|... ....+..+.+.++|+||.|
T Consensus 21 ~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred Cccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEEe
Confidence 3577 9999999999999999999998 87 68888998778788888888653 1245677888999999999
Q ss_pred ccchH---HHHHHHHHHhcCCCC--cEEEEe
Q 007951 186 ISDAA---QADNYEKIFSCMKPN--SILGLS 211 (583)
Q Consensus 186 vpd~a---~~~Vl~eI~~~Lk~G--aiL~~a 211 (583)
|+... ..+.++.....-+.+ .+++|.
T Consensus 92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 92 TAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 98432 245665543322222 356665
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.86 E-value=5.4e-05 Score=65.41 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-HcCceecCCCcCCH---hhh-hccCCeEEEec
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-~~G~~~~d~t~~d~---~Ea-v~~ADIVILav 186 (583)
|+|.|+|+|.+|..+++.|.+. |++|++.+.+ +...+.+. +.|...-.+...+. .++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d-~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCC-hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 7899999999999999999998 9988765544 44454444 44543211112222 222 68999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++....-....++..+.+..+|..++
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEec
Confidence 98765444444555566666666544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=2.3e-05 Score=70.01 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEE-ecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg-~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~ 189 (583)
++|||||+|.+|.- +...++.. .+++++.. ++..++..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 58999999999975 56666653 15665533 344445556667777764 567888899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEE
Q 007951 190 AQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 190 a~~~Vl~eI~~~Lk~GaiL 208 (583)
.+.++..... +.|+-|
T Consensus 73 ~h~~~~~~al---~~gk~V 88 (164)
T d1tlta1 73 SHFDVVSTLL---NAGVHV 88 (164)
T ss_dssp HHHHHHHHHH---HTTCEE
T ss_pred hccccccccc---ccccee
Confidence 9988887654 345443
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.81 E-value=2.3e-05 Score=70.25 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=58.2
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVILavpd~ 189 (583)
+||||||+|.+|.. +...|+.. .++++++.++..++....+.+.++.. ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 68999999999976 56666554 14566655555455566677777642 1456677765 679999999999
Q ss_pred HHHHHHHHHHh
Q 007951 190 AQADNYEKIFS 200 (583)
Q Consensus 190 a~~~Vl~eI~~ 200 (583)
.+.++......
T Consensus 74 ~H~~~~~~al~ 84 (167)
T d1xeaa1 74 VHSTLAAFFLH 84 (167)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99998876544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=3e-05 Score=70.38 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=61.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecCCCcCCHhhhh--ccCCeEEEeccc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d~t~~d~~Eav--~~ADIVILavpd 188 (583)
.||||||+|.+|..++..|+.. .+++++...+. .+++.+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4899999999999999999865 14565533343 334455667777642111246888887 457999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEE
Q 007951 189 AAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
..+.++..... +.|.-|.
T Consensus 77 ~~h~~~~~~~l---~~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAA---EKGKHIL 94 (184)
T ss_dssp GGHHHHHHHHH---TTTCEEE
T ss_pred hhhcchhhhhh---hccceee
Confidence 99988776653 4455443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=5.3e-05 Score=65.02 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=63.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee--cCCCcCC-Hhhh-hccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGD-IYET-ISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~--~d~t~~d-~~Ea-v~~ADIVILavp 187 (583)
|++.|||+|.+|..+++.|.+. |+++++.+ .+++..+.+...|... .|.+-.+ +.++ +++||.||++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid-~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVD-INEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEE-SCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEec-CcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6799999999999999999998 99876654 4555666676777532 1222111 2233 789999999999
Q ss_pred chHHHHHHH-HHHhcCCCCcEEEEec
Q 007951 188 DAAQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 188 d~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
+.....++- .+...+....++.-+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 776654443 4445554455555444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.53 E-value=8.1e-05 Score=65.19 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=58.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec--CCC--cCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT--LGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~--d~t--~~d~~Eav~~ADIVILavp 187 (583)
|+|.|||+|.||.++|+.|.+. |++|++.+|..++..+.+...+.... ... .....+.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999998 99999999887666666655443210 000 1123466788999999999
Q ss_pred chHHHHHHHH
Q 007951 188 DAAQADNYEK 197 (583)
Q Consensus 188 d~a~~~Vl~e 197 (583)
......+...
T Consensus 77 ~~~~~~~~~~ 86 (182)
T d1e5qa1 77 YTFHATVIKS 86 (182)
T ss_dssp GGGHHHHHHH
T ss_pred chhhhHHHHH
Confidence 8766655543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=0.00019 Score=65.04 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=55.9
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEE-EecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEecc
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViV-g~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavp 187 (583)
.||||||+|.+|.. ++..+++. +..++++. .++..++....+...|... ...+.+|+++ +.|+|++++|
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp 76 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 76 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeecccc
Confidence 47899999999986 57777753 01245543 3333333444456666542 1568888885 5799999999
Q ss_pred chHHHHHHHHHHh
Q 007951 188 DAAQADNYEKIFS 200 (583)
Q Consensus 188 d~a~~~Vl~eI~~ 200 (583)
+..+.+++.....
T Consensus 77 ~~~h~~~~~~al~ 89 (181)
T d1zh8a1 77 VELNLPFIEKALR 89 (181)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 9999888876543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.31 E-value=0.00014 Score=65.68 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=57.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchHH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a~ 191 (583)
.||||||+|.||..++..|++. .+++++...+.+.+. +...++.. ..+..+...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 4799999999999999999864 156655433333221 22234432 45667778899999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q 007951 192 ADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 192 ~~Vl~eI~~~Lk~GaiL~~ 210 (583)
.++... .|+.|.-+++
T Consensus 72 ~~~a~~---aL~aG~~vv~ 87 (170)
T d1f06a1 72 IPEQAP---KFAQFACTVD 87 (170)
T ss_dssp HHHHHH---HHTTTSEEEC
T ss_pred HHHHHH---HHHCCCcEEE
Confidence 776654 3556765443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.20 E-value=0.0005 Score=61.18 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=44.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc----CceecCC-CcCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~----G~~~~d~-t~~d~~Eav~~ADIVIL 184 (583)
+||+|||.|.+|.++|..|... ++ ++++.+...++....+.+. -+...+. ......+.+++||+|++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvi 80 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEE
Confidence 7999999999999999999987 65 6665554433333333221 1110000 01223467889999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+.-
T Consensus 81 tag 83 (148)
T d1ldna1 81 CAG 83 (148)
T ss_dssp CCS
T ss_pred ecc
Confidence 643
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.13 E-value=0.00046 Score=62.24 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=59.3
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEE-ecC-CcccHHHHHHcCceecCCCcCCHhhh-----hccCCeEE
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRK-GSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg-~r~-~s~s~~~A~~~G~~~~d~t~~d~~Ea-----v~~ADIVI 183 (583)
.||||||+|.+|.- +.+.|++. ...+++.. .++ .++..+.|++.|+... ..+.++. ..+.|+|+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~-----~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiVf 76 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA-----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVF 76 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC-----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC-----CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEEE
Confidence 47999999999986 55666655 12344333 332 2344577888888642 2223333 24689999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
++||...+.+-... ...++.|..+++.+.
T Consensus 77 ~ATpag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 77 DATSASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp ECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred EcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 99999887653322 223578998887765
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.12 E-value=0.00036 Score=60.49 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=53.6
Q ss_pred CEEEEE-ccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---ceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgII-G~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G---~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 789999 7999999999999999 9999999887554333333221 110 0012344555666778888888
Q ss_pred chHHHHHHHH
Q 007951 188 DAAQADNYEK 197 (583)
Q Consensus 188 d~a~~~Vl~e 197 (583)
.....+....
T Consensus 74 ~~~~~~~~~~ 83 (212)
T d1jaya_ 74 WEHAIDTARD 83 (212)
T ss_dssp HHHHHHHHHH
T ss_pred eeccchHHHH
Confidence 7777765543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0002 Score=64.62 Aligned_cols=94 Identities=20% Similarity=0.046 Sum_probs=61.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC---ceecCCCcCCHhh-hhccCCeE
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYE-TISGSDLV 182 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G---~~~~d~t~~d~~E-av~~ADIV 182 (583)
.++| |+|.|||.|-.+.|++..|.+. |.+|.+.+|..++..+.+.... ... ..+..+ ...++|+|
T Consensus 15 ~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dli 83 (170)
T d1nyta1 15 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDLI 83 (170)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSEE
T ss_pred CCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----cccccccccccccee
Confidence 4678 9999999999999999999988 8888888887665555554432 111 122222 34679999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|.+||.....+....-...++++.++.|+
T Consensus 84 IN~Tp~G~~~~~~~~~~~~~~~~~~v~D~ 112 (170)
T d1nyta1 84 INATSSGISGDIPAIPSSLIHPGIYCYDM 112 (170)
T ss_dssp EECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred ecccccCcccCCCCCcHHHhccCcEEEEe
Confidence 99999876532211112235555555544
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.10 E-value=0.0005 Score=64.59 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=55.5
Q ss_pred CEEEEEccchhHHH-HHHHHHHhhhhhcCCceEEEEecC-CcccHHHHHHcCceecC-CCcCCHhhhhc--cCCeEEEec
Q 007951 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A-~A~nLrdsl~~~g~G~~ViVg~r~-~s~s~~~A~~~G~~~~d-~t~~d~~Eav~--~ADIVILav 186 (583)
-+|||||+|.+|.. ++..++.. .+++++...+. .++..+.+++.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 37999999999975 44555543 15566544443 34445666777764210 01467888885 579999999
Q ss_pred cchHHHHHHHHHH
Q 007951 187 SDAAQADNYEKIF 199 (583)
Q Consensus 187 pd~a~~~Vl~eI~ 199 (583)
|+..+.++..+..
T Consensus 109 p~~~H~~~~~~al 121 (221)
T d1h6da1 109 PNSLHAEFAIRAF 121 (221)
T ss_dssp CGGGHHHHHHHHH
T ss_pred chhhhhhHHHHhh
Confidence 9999988877644
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.08 E-value=0.0012 Score=58.96 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=44.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+||+|||.|..|.++|..|..+ ++ ++++.+....+....+.. .+.........+.++++++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 8999999999999999988877 65 665554443332222222 111100001245678899999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.02 E-value=0.00047 Score=62.85 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=46.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec---------------CCCcCCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~---------------d~t~~d~~Eav 176 (583)
|||+|||+|-+|.++|..+ .. |++| +|.+.+++..+... .|..+- -....+.....
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V-~g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEV-TIVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEE-EEECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcE-EEEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7999999999999999876 46 8886 57777665444332 232110 00123555677
Q ss_pred ccCCeEEEeccch
Q 007951 177 SGSDLVLLLISDA 189 (583)
Q Consensus 177 ~~ADIVILavpd~ 189 (583)
.++|+|+++||..
T Consensus 72 ~~~~ii~v~vpt~ 84 (196)
T d1dlja2 72 KEAELVIIATPTN 84 (196)
T ss_dssp HHCSEEEECCCCC
T ss_pred hccccccccCCcc
Confidence 8999999998843
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.95 E-value=0.00037 Score=70.44 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEE
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+-++++|||.|.|+..+++.+..- +++ +|.++.+..++..+.+.+ .|+.. ..+.+.++++++||+|+.
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v-----~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t 199 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKH-----LGIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITT 199 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHH-----SCCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEE
T ss_pred CCceEEEEcccHHHHHHHHHHhhh-----cceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceee
Confidence 337899999999999999998875 255 677777765444444432 24432 126789999999999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|+......++. ...++||..|.-+.+.
T Consensus 200 ~Tas~s~~Pv~~--~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 200 VTADKAYATIIT--PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CCCCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred ccccCCCCcccc--hhhcCCCCEEeecccc
Confidence 997543333333 2468899887766554
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.94 E-value=0.00098 Score=59.29 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=43.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+.. .+... ....|. +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999987 64 665555443333333321 11110 002344 457899999
Q ss_pred EEecc
Q 007951 183 LLLIS 187 (583)
Q Consensus 183 ILavp 187 (583)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.91 E-value=0.00013 Score=66.28 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=52.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
.++| ++|.|||.|-.+.+++..|.+. +.+|++.+|..++..+.+...+................++|+||.+|
T Consensus 15 ~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~t 87 (171)
T d1p77a1 15 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINAT 87 (171)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECC
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecc
Confidence 4678 9999999999999999999876 66888999986665555555432100000111222357899999999
Q ss_pred cchHH
Q 007951 187 SDAAQ 191 (583)
Q Consensus 187 pd~a~ 191 (583)
|....
T Consensus 88 p~g~~ 92 (171)
T d1p77a1 88 SAGLS 92 (171)
T ss_dssp CC---
T ss_pred ccccc
Confidence 97754
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.90 E-value=0.0018 Score=57.18 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCceecCC--CcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~~d~--t~~d~~Eav~~ADIVILa 185 (583)
+||+|||.|.+|.++|..|..+ ++ ++++.+...++....+.+ ++...... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 6899999999999999999987 65 666666554443344433 22110000 012234568899999997
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.87 E-value=0.0016 Score=56.68 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=67.5
Q ss_pred hhhcCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCC
Q 007951 106 DAFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 106 ~~l~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
..|+- ++|+|||. |..|..+.++|++. | .+|+-.+.+... =.|... ..++.|+=...|
T Consensus 4 ~lf~P-ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~~------i~G~~~----y~sl~dlp~~vD 66 (129)
T d2csua1 4 YFFNP-KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEID 66 (129)
T ss_dssp TTTSC-SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCS
T ss_pred HhCCC-CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCccc------cCCeEe----ecchhhcCCCCc
Confidence 34555 89999996 88999999999875 4 466544443222 146664 567777777889
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
++++++|+....+++++.... .-..++++++||.
T Consensus 67 lvvi~vp~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 67 LAIIVVPKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred eEEEecChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 999999999999999986542 2345788899985
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.85 E-value=0.0026 Score=53.24 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| ++|.|||.|..|..-++.|.++ |.+|++......+.. ..+.+.++..... ..+ .+-+.++++|+.+
T Consensus 9 ~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~-~~~-~~dl~~~~lv~~a 79 (113)
T d1pjqa1 9 QLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEG-PFD-ETLLDSCWLAIAA 79 (113)
T ss_dssp CCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEES-SCC-GGGGTTCSEEEEC
T ss_pred EeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeecc-CCC-HHHhCCCcEEeec
Confidence 5789 9999999999999999999998 888877665543333 3333333332111 122 3457789999999
Q ss_pred ccchHHHH-HHHH
Q 007951 186 ISDAAQAD-NYEK 197 (583)
Q Consensus 186 vpd~a~~~-Vl~e 197 (583)
+.+..... +++.
T Consensus 80 t~d~~~n~~i~~~ 92 (113)
T d1pjqa1 80 TDDDTVNQRVSDA 92 (113)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 99887743 4443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00028 Score=57.61 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=32.7
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
.++| |||.|||+|..|.+.|+.|... |.+|++.++..
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRM 38 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSS
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCc
Confidence 3788 9999999999999999999998 99988887653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.78 E-value=0.0019 Score=55.24 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=56.5
Q ss_pred CEEEEEc----cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG----~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|+||| -|..|..+.++|++. |++|+-.+.+. +. =.|... ..++.|+=..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~~-~~-----i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNY-DE-----IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEcccc-cc-----ccCccc----cccchhccccceEEEEEeC
Confidence 7899999 467799999999999 99865443332 21 146664 5677777777899999999
Q ss_pred chHHHHHHHHHHh
Q 007951 188 DAAQADNYEKIFS 200 (583)
Q Consensus 188 d~a~~~Vl~eI~~ 200 (583)
++...+++++...
T Consensus 66 ~~~~~~~l~~~~~ 78 (116)
T d1y81a1 66 PKVGLQVAKEAVE 78 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.76 E-value=8.7e-05 Score=66.74 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=49.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccch
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd~ 189 (583)
.+|||||+|.||..++.+|... .+. ..-.++..+... +.+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~-~~~--~~~~~~~~~~~~---~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDP-RSA--AFLNLIGFVSRR---ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSH-HHH--TTEEEEEEECSS---CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhC-CCC--cEEEEEeccchH---HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 4899999999999999888764 110 111123322211 111122333 357788775 568999999999
Q ss_pred HHHHHHHHHHh
Q 007951 190 AQADNYEKIFS 200 (583)
Q Consensus 190 a~~~Vl~eI~~ 200 (583)
.+.++.....+
T Consensus 77 ~H~~~~~~al~ 87 (172)
T d1lc0a1 77 SHEDYIRQFLQ 87 (172)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99888776443
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.75 E-value=0.0037 Score=55.12 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
|||+|||.|..|.++|..|..+ |. ++++.+...++.+..+.. ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999999887 65 565544443333322221 111000000224 4688999999
Q ss_pred EEecc
Q 007951 183 LLLIS 187 (583)
Q Consensus 183 ILavp 187 (583)
+++..
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.75 E-value=0.003 Score=55.59 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=43.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc--CceecC--C---CcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--GFTEEN--G---TLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~--G~~~~d--~---t~~d~~Eav~~ADIVI 183 (583)
+||+|||.|.+|.++|..|... ++ ++++.+...+.....+... .....+ . ...+. +.+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence 6999999999999999999877 65 6555544444333333321 110000 0 02344 4578999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9873
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.73 E-value=0.001 Score=59.89 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=52.3
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++ ++|.|||.|-.|.|++..|++. |. ++.+..|+.++....+...+... .... -..++|+||.+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 56 8999999999999999999998 86 68888887666666666666653 2222 2357999999999
Q ss_pred ch
Q 007951 188 DA 189 (583)
Q Consensus 188 d~ 189 (583)
..
T Consensus 83 iG 84 (167)
T d1npya1 83 IG 84 (167)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.66 E-value=0.0025 Score=56.56 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=42.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH----cCceecCCC-cCCHhhhhccCCeEEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGT-LGDIYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~----~G~~~~d~t-~~d~~Eav~~ADIVIL 184 (583)
|||+|||.|.+|.++|..|... |. ++++.+....+....+.. ..+...+.. ..+..+.+++||+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 7999999999999999999887 64 555544333322222221 111100000 1122356899999999
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 744
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.66 E-value=0.0039 Score=55.18 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=42.2
Q ss_pred EEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHcCce--ec--C--CCcCCHhhhhccCCeEE
Q 007951 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFT--EE--N--GTLGDIYETISGSDLVL 183 (583)
Q Consensus 113 kIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~G~~--~~--d--~t~~d~~Eav~~ADIVI 183 (583)
||+|||. |.+|.++|..|... |+ ++++.+... ....|...--. .. . -...+..|++++||+|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~~--~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivV 73 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVV 73 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred eEEEECCCChHHHHHHHHHHhC------CccceEEEEeccc--cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence 8999995 99999999999987 65 555444332 23333322110 00 0 00235578899999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++.-
T Consensus 74 itag 77 (144)
T d1mlda1 74 IPAG 77 (144)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9643
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.63 E-value=0.0018 Score=61.06 Aligned_cols=83 Identities=8% Similarity=0.143 Sum_probs=54.9
Q ss_pred CEEEEEccchh----HHHHHHHHHHhhhhhcCCceEEEEecCC-cccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 007951 112 NQIGVIGWGSQ----GPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (583)
Q Consensus 112 kkIgIIG~G~m----G~A~A~nLrdsl~~~g~G~~ViVg~r~~-s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVIL 184 (583)
.+|||||+|.+ +..+..+++.. ..+++++...+.+ ++..+.+.+.++.. .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 58999999984 45666677653 1146765333433 34445566776542 112468888875 5789999
Q ss_pred eccchHHHHHHHHHH
Q 007951 185 LISDAAQADNYEKIF 199 (583)
Q Consensus 185 avpd~a~~~Vl~eI~ 199 (583)
++|+..+.++.....
T Consensus 92 ~tp~~~h~~~~~~al 106 (237)
T d2nvwa1 92 SVKVPEHYEVVKNIL 106 (237)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHH
Confidence 999999988777543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.58 E-value=0.0051 Score=54.79 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=43.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHc-------CceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~-------G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.||+|||.|..|.++|..|..+ ++ ++++.+...++....|... +..... ...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v-~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV-SGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE-EEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcEE-EecccccccCCCcEEE
Confidence 6999999999999999988876 55 6555554443333332221 111000 0123456789999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0082 Score=53.08 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=64.4
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh--------c
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------S 177 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav--------~ 177 (583)
-.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.|++.|+... +....+..+.. .
T Consensus 25 ~~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~-~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 25 TLG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVV-TDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-EESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCC-CEEEEECCCccHHHHHHHHHHc------CCceEEe-ccCCHHHHHHHHHhCCcccccccccccccccccccccCCC
Confidence 356 8999999999999999999987 87 5554 4555667889999997421 11112333322 2
Q ss_pred cCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 178 ~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.+|+||-++.... .++.....+++|-.+++.
T Consensus 97 g~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 97 KPEVTIECTGAEA---SIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CceEEEeccCCch---hHHHHHHHhcCCCEEEEE
Confidence 5899999998644 455556667887766654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.50 E-value=0.0032 Score=58.82 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=54.8
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc-cCCeEEE
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~-~ADIVIL 184 (583)
+.|+| ++|+|.|+|++|..+|+.|.+. |.+|++.+ .+......+...|... .+.+++.. +|||++-
T Consensus 23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d-~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~iP 89 (201)
T d1c1da1 23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVAD-TDTERVAHAVALGHTA-----VALEDVLSTPCDVFAP 89 (201)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEec-chHHHHHHHHhhcccc-----cCccccccccceeeec
Confidence 45899 9999999999999999999998 98876654 4555677777888763 45566654 7999887
Q ss_pred eccch
Q 007951 185 LISDA 189 (583)
Q Consensus 185 avpd~ 189 (583)
|--..
T Consensus 90 cA~~~ 94 (201)
T d1c1da1 90 CAMGG 94 (201)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 64433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.48 E-value=0.0019 Score=59.89 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=62.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecC---CCcC------------------
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLG------------------ 170 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d---~t~~------------------ 170 (583)
-++.|||.|..|..=++-.+.- |.+|.+.+.+ ....++.+..|-..-. ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 4899999999998777666665 8888776554 4456666666532100 0000
Q ss_pred ----CHhhhhccCCeEEEe--ccchHHHHHHH-HHHhcCCCCcEEEEec
Q 007951 171 ----DIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 171 ----d~~Eav~~ADIVILa--vpd~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
.+.+.+++||+||-+ +|-...+.++. +....||||++|+|.+
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 123457899999974 45444455554 6888999999999884
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.0024 Score=56.12 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=42.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~----~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
+||+|||.|..|.++|..|..+ ++ ++.+.+...++....+.. ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6999999999999999999887 64 655544443333322222 11110000012235678999999998
Q ss_pred c
Q 007951 186 I 186 (583)
Q Consensus 186 v 186 (583)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.45 E-value=0.0033 Score=55.07 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=43.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cC--ceecCC--CcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~d~--t~~d~~Eav~~ADIVI 183 (583)
|||+|||.|.+|.+++..|..+ ++ ++.+.+....+....+.. .- +...+. ...+..+++++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999887 64 665555444332322221 10 000000 0124456789999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 985
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.39 E-value=0.0056 Score=56.10 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=56.3
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc-HHHHHHcC-----------------ceecCCCcCCHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAG-----------------FTEENGTLGDIY 173 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s-~~~A~~~G-----------------~~~~d~t~~d~~ 173 (583)
-||||.|+|.||+.+++.+.++ .+++++..++..+.. .......+ +.. ..+..
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v----~g~~~ 72 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV----AGTVE 72 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC----CCCHH
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec----CCchh
Confidence 4899999999999999999876 146765555543321 22222222 222 23566
Q ss_pred hhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 174 Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
++..++|+|+-|||.....+-. ..+++.|+-+++++
T Consensus 73 ~~~~~vDiViecTG~f~~~e~a---~~hl~~G~KvIi~~ 108 (178)
T d1b7go1 73 DLIKTSDIVVDTTPNGVGAQYK---PIYLQLQRNAIFQG 108 (178)
T ss_dssp HHHHHCSEEEECCSTTHHHHHH---HHHHHTTCEEEECT
T ss_pred hhhhcCCEEEECCCCcCCHHHH---HHHHHcCCEEEEEC
Confidence 7778899999999976554443 34455565444443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.33 E-value=0.001 Score=61.12 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=63.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc-C--ceecCCCcCCHhhhhccCCeEEEec--
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-G--FTEENGTLGDIYETISGSDLVLLLI-- 186 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~-G--~~~~d~t~~d~~Eav~~ADIVILav-- 186 (583)
-|+.|||.|.-|..=++..+.- |.+|.+.+.+.+ ..+..+.. + +.........+++.+++||+||-++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~~-~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVE-RLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcHH-HHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 5899999999999888877776 888887766543 33333332 1 1110001113578899999999865
Q ss_pred cchHHHHHHH-HHHhcCCCCcEEEEec
Q 007951 187 SDAAQADNYE-KIFSCMKPNSILGLSH 212 (583)
Q Consensus 187 pd~a~~~Vl~-eI~~~Lk~GaiL~~a~ 212 (583)
|-...+.++. +....||||++|+|.+
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 4444445554 6888999999999884
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.0057 Score=55.14 Aligned_cols=69 Identities=22% Similarity=0.163 Sum_probs=42.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHHc----Ccee--cCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE--ENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~~----G~~~--~d~t~~d~~Eav~~ADIVI 183 (583)
.||+|||.|.+|.++|..|... |+ ++++.+...++....+... -+.. ......+ .+.+++||+|+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivv 92 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVI 92 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEE
Confidence 7999999999999999999987 65 6665554433322222211 1100 0000223 45668999999
Q ss_pred Eecc
Q 007951 184 LLIS 187 (583)
Q Consensus 184 Lavp 187 (583)
++.-
T Consensus 93 itag 96 (159)
T d2ldxa1 93 ITAG 96 (159)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9753
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.25 E-value=0.0039 Score=54.52 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=79.7
Q ss_pred CEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|+|||. +..|....++|++. |+++.....+... ..-.|... ..+..|+-..-|+|++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~----~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQG----EELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTT----SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecccc----ceeeceec----ccchhhccCCCceEEEecc
Confidence 89999996 78999999999998 9987665432110 01145553 5677777677899999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchhhHHhHh
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~vR~lf~ 249 (583)
++...+++++.... ... .+.+..|+.-..+.+ +.-..++.|| +||+++-+-.++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k-~i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPG-LVWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCS-CEEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCC-eEEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999986543 232 456677764221111 0112467776 78998877666664
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.20 E-value=0.0046 Score=55.86 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=45.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHHH--cCceecCC----CcCCHhhhhc
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG----TLGDIYETIS 177 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~~--~G~~~~d~----t~~d~~Eav~ 177 (583)
..++. +||+|||.|.+|.++|..|... |+ ++++.+...+.....|.. +....... ...+ .+.++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~ 87 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTA 87 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcc
Confidence 45566 8999999999999999999988 76 665555443333333322 11110000 0223 45678
Q ss_pred cCCeEEEec
Q 007951 178 GSDLVLLLI 186 (583)
Q Consensus 178 ~ADIVILav 186 (583)
+||+|+++.
T Consensus 88 ~adiVVitA 96 (160)
T d1i0za1 88 NSKIVVVTA 96 (160)
T ss_dssp TCSEEEECC
T ss_pred cccEEEEec
Confidence 999999943
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.15 E-value=0.0065 Score=54.21 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=63.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhhc-----cCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav~-----~AD 180 (583)
.-.| .+|.|+|+|.+|...++-++.. |..+++..+.++...+.+++.|.... +....+..+.++ ..|
T Consensus 26 ~~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 26 VTPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp CCTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred CCCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 3456 8999999999999999999987 87666666666667889999887420 111233444332 269
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+||-++..... ++.....++++-.+++.
T Consensus 99 ~vid~~G~~~~---~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 99 FALESTGSPEI---LKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEECSCCHHH---HHHHHHTEEEEEEEEEC
T ss_pred EEEEcCCcHHH---HHHHHhcccCceEEEEE
Confidence 99999875433 33444556666555443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.13 E-value=0.0097 Score=52.30 Aligned_cols=112 Identities=9% Similarity=0.009 Sum_probs=73.1
Q ss_pred cCCCEEEEEcc----chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 109 NGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 109 ~gikkIgIIG~----G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+- ++|+|||. +..|..++.+|++. |++|+-.+.+.. .=.|... ..++.|+-..-|+|++
T Consensus 18 ~~-ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~~~------~i~G~~~----~~sl~dlp~~iD~v~i 80 (139)
T d2d59a1 18 RY-KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPKYE------EVLGRKC----YPSVLDIPDKIEVVDL 80 (139)
T ss_dssp HC-CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCS------EETTEEC----BSSGGGCSSCCSEEEE
T ss_pred cC-CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCccc------ccCCCcc----cccccccCccceEEEE
Confidence 44 89999995 57899999999998 998654443321 1246664 5677887778999999
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCCchh
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg~~ 243 (583)
++|++.+.++++++... ....++...++++-...+. .-..++.+| .||++.-.
T Consensus 81 ~vp~~~~~~~~~e~~~~-g~k~v~~~~G~~~ee~~~~---a~~~gi~vi--g~~C~~v~ 133 (139)
T d2d59a1 81 FVKPKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKK---ADEAGLIIV--ANRCMMRE 133 (139)
T ss_dssp CSCHHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHH---HHHTTCEEE--ESCCHHHH
T ss_pred EeCHHHHHHHHHHHHHh-CCCEEEEeccccCHHHHHH---HHHCCCEEE--cCCcChhh
Confidence 99999999999986542 2333344444454211111 111345554 58885544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0092 Score=51.75 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=64.6
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccchH
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd~a 190 (583)
|||+|+|+ |.||.+++..+.+. |++++.+.+.+. .+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~~---------------------~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVNG---------------------VEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETTE---------------------EEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCCc---------------------HHHhccCCEEEEecCHHH
Confidence 68999997 99999999888877 888766544221 223467899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhcccccCCCCccEEEeccCCC
Q 007951 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~GaiL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngP 240 (583)
..+.++....+=+ .+|+=+.|++-..++. .....+.++++ .+||+|
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~-i~~~ak~~pv~-~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQM-LRELSKEVPVV-QAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCHHHHHH-HHHHTTTSEEE-ECSCTH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCHHHHHH-HHHHHhhCCEE-eeeccC
Confidence 9888886443311 2566667886333221 00123455554 677776
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0018 Score=58.72 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCccc---HHHHHHc----CceecCCCcCC---Hhhh
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS---FAEARAA----GFTEENGTLGD---IYET 175 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s---~~~A~~~----G~~~~d~t~~d---~~Ea 175 (583)
.++| ++|.|||.|-.|.|++..|.+. |. ++++.+|..++. ...+.+. .....-....+ ..+.
T Consensus 15 ~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
T d1vi2a1 15 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 87 (182)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhh
Confidence 4688 9999999999999999999998 76 677778764422 1222221 11110000122 3456
Q ss_pred hccCCeEEEeccchHHHHHHHHH---HhcCCCCcEEEEe
Q 007951 176 ISGSDLVLLLISDAAQADNYEKI---FSCMKPNSILGLS 211 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~Vl~eI---~~~Lk~GaiL~~a 211 (583)
+..+|+||.+||.......-+.+ ...++++.++.|+
T Consensus 88 ~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di 126 (182)
T d1vi2a1 88 LASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTEC 126 (182)
T ss_dssp HHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEEC
T ss_pred hcccceeccccCCccccccchhhhhHHHhhhcchhhHHh
Confidence 78999999999975432111111 2345666666655
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.94 E-value=0.0052 Score=60.80 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccH---HHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~---~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
-++++|||.|.|+..++..|..- +.+ +|.|+.|..++.. +.....++.. ..+..+++.+||+|+.+|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~-----~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRV-----FDIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----SCCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHH-----hhhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEec
Confidence 37899999999999999998865 134 6777777644332 3333445543 456778899999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+-..- +++ .+.++||+.|..+....
T Consensus 196 ~s~~P--~~~--~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 196 PSRKP--VVK--AEWVEEGTHINAIGADG 220 (320)
T ss_dssp CCSSC--CBC--GGGCCTTCEEEECSCCS
T ss_pred cCccc--ccc--hhhcCCCCeEeecCCcc
Confidence 84321 232 24688999887665543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.90 E-value=0.031 Score=48.87 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=61.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec---CCCcCCHhh---hh-----
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~---d~t~~d~~E---av----- 176 (583)
..| .+|.|+|.|.+|...++-++.. |.+|++.. .++...+.|++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~-~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTA-RSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccc-hHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 456 8999999999999999999887 88876554 44556888998886320 111112222 12
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
..+|+||-++.... .++.....++++-.|+..
T Consensus 97 ~g~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNEK---CITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCChH---HHHHHHHHHhcCCceEEE
Confidence 24799999987543 344445567777666544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.79 E-value=0.0065 Score=53.67 Aligned_cols=68 Identities=24% Similarity=0.227 Sum_probs=42.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc--eEEEEecCCcccHHHHH--HcC--ceecCCC--cCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEENGT--LGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s~~~A~--~~G--~~~~d~t--~~d~~Eav~~ADIVI 183 (583)
.||+|||.|.+|.++|..|..+ ++ ++++.+....+....+. ++. +.. ... ..+..+.+++||+|+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~~~~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSDDPEICRDADMVV 74 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCC-CceeecCCCHHHhhCCcEEE
Confidence 5899999999999999999887 65 66554444332222222 111 110 000 122346688999999
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
++.
T Consensus 75 ita 77 (143)
T d1llda1 75 ITA 77 (143)
T ss_dssp ECC
T ss_pred Eec
Confidence 964
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.73 E-value=0.011 Score=51.05 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=65.5
Q ss_pred hhhcCCCEEEEEcc----------chhHHHHHHHHHHhhhhhcCCceEEEEecCCc------ccHHHHHH----cCceec
Q 007951 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARA----AGFTEE 165 (583)
Q Consensus 106 ~~l~gikkIgIIG~----------G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s------~s~~~A~~----~G~~~~ 165 (583)
+.+.+ +||+|+|+ ++....++..|.+. |.+|.+.+..-+ ...+.... .+..
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-- 79 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL-- 79 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT--
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce--
Confidence 45667 99999997 67888889999888 988877654210 00111110 1111
Q ss_pred CCCcCCHhhhhccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 166 d~t~~d~~Eav~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+.+..++++++|+|+++++.....+ +...++++.+|.|.-|+
T Consensus 80 --~~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 80 --LVSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp --BCSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSC
T ss_pred --eehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCC
Confidence 14688999999999999999887654 44456778899998876
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.03 Score=46.01 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCEEEEEccchhH-HHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 111 ikkIgIIG~G~mG-~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++|=|||.|=.| .++|+-|++. |++|...+...+...+...+.|+... .....+-+++.|+||..
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVS 74 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEEC
Confidence 3999999999999 6779999999 99987666655555667777898752 33445667899998874
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.036 Score=47.96 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=49.8
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCccc---HHHHHHcCceecCCCcCCHh----hhhccCCeEEEe
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s---~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILa 185 (583)
.|-|+|||..|..+++.|.+. |.++++.....++. .+.....|+..-.+...+.+ .-+++||.||++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 488999999999999999998 88877765543332 23334456532111122321 236789999999
Q ss_pred ccchHHHH
Q 007951 186 ISDAAQAD 193 (583)
Q Consensus 186 vpd~a~~~ 193 (583)
+++....-
T Consensus 79 ~~~d~~n~ 86 (153)
T d1id1a_ 79 SDNDADNA 86 (153)
T ss_dssp SSCHHHHH
T ss_pred cccHHHHH
Confidence 99876543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.51 E-value=0.0047 Score=55.47 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-----cCCCcCCHhhhhccCCe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-----ENGTLGDIYETISGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-----~d~t~~d~~Eav~~ADI 181 (583)
.++| |+|.|||.|-.+.|++..|.+. | +|.|.+|..++..+.+....-.. ..-...+.......+|+
T Consensus 15 ~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 86 (177)
T d1nvta1 15 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDI 86 (177)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhh
Confidence 4788 9999999999999999998655 6 78888887554444433221000 00002345556778999
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
||.++|...
T Consensus 87 iIn~tp~g~ 95 (177)
T d1nvta1 87 IINATPIGM 95 (177)
T ss_dssp EEECSCTTC
T ss_pred hccCCcccc
Confidence 999999654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.42 E-value=0.024 Score=50.83 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=40.3
Q ss_pred CEEEEEccchhHHH--HHHHHHHhhhhhcCCc-eEEEEecCCcc-cH----HH-----HHHcCceecCCCcCCHhhhhcc
Q 007951 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDI-VVKVGLRKGSR-SF----AE-----ARAAGFTEENGTLGDIYETISG 178 (583)
Q Consensus 112 kkIgIIG~G~mG~A--~A~nLrdsl~~~g~G~-~ViVg~r~~s~-s~----~~-----A~~~G~~~~d~t~~d~~Eav~~ 178 (583)
+||+|||.|+.|.+ ++.-++.. + .... +++ ..+.++. .. +. ....+....-....|..+++++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~--~~~~~eI~-L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g 77 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-H--ELPVGELW-LVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 77 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-T--TCCEEEEE-EECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-c--ccCCCEEE-EEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC
Confidence 68999999988743 44444443 1 1112 444 4443332 11 11 1112322111124577889999
Q ss_pred CCeEEEeccch
Q 007951 179 SDLVLLLISDA 189 (583)
Q Consensus 179 ADIVILavpd~ 189 (583)
||+|+++....
T Consensus 78 aDvVv~ta~~~ 88 (169)
T d1s6ya1 78 ADFVTTQFRVG 88 (169)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEccccC
Confidence 99999998643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.41 E-value=0.0098 Score=53.39 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=62.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------cc
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~ 178 (583)
+.-+| .+|.|+|+|-+|...++-++.. |...++..+.+++..+.|++.|...- +..-.+..+.+ ..
T Consensus 24 ~~~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 24 DIEMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TCCTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCCC-CEEEEEcCCcchhhhhhhhhcc------cccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccC
Confidence 34457 8999999999999999999977 87434455566667899999996320 11112233322 23
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+||-++.-.. .+++....++++-.++..
T Consensus 97 ~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 97 VDRVIMAGGGSE---TLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred cceEEEccCCHH---HHHHHHHHHhcCCEEEEE
Confidence 899999997432 334444556777666554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.016 Score=51.73 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=59.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCCcccHHHHHHcCceec-CCCcCCHhhh---h----
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---I---- 176 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Ea---v---- 176 (583)
+.-+| .+|.|+|.|.+|...++-++.. |. +|++. +.++...+.+++.|...- +..-.+..+. +
T Consensus 25 ~~~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~-~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 25 ESFAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVI-AGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp SCCBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHT
T ss_pred CCCCC-CEEEEECCCccchhheeccccc------cccccccc-ccccccccccccccceEEEeccccchHHHHHHHHHhh
Confidence 34467 8999999999999999999887 87 55544 445566789999886310 1111222222 1
Q ss_pred --ccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 177 --SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 177 --~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
...|+||-++.-.. .++.....+++|-.+++.
T Consensus 97 ~~~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 97 HGRGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp TTSCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCCCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 13789988886432 234444556666655433
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.30 E-value=0.011 Score=52.34 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=40.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCc--ccHHHHHH--c--CceecCCC----cCCHhhhhcc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARA--A--GFTEENGT----LGDIYETISG 178 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s--~s~~~A~~--~--G~~~~d~t----~~d~~Eav~~ 178 (583)
|||+|||. |.+|.++|..|..+ ++ ++.+.+.... +.+..+.. + .....+.. ..+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999887 65 6655554321 11111111 1 11100000 1223468889
Q ss_pred CCeEEEe
Q 007951 179 SDLVLLL 185 (583)
Q Consensus 179 ADIVILa 185 (583)
||+|+++
T Consensus 75 aDvVVit 81 (145)
T d1hyea1 75 SDVVIIT 81 (145)
T ss_dssp CSEEEEC
T ss_pred ceEEEEe
Confidence 9999997
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0089 Score=54.01 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=48.2
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCC---HhhhhccCCeEEEe
Q 007951 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (583)
Q Consensus 110 gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d---~~Eav~~ADIVILa 185 (583)
++|||.|+| .|.+|.+++..|.++ |++|++..|+.++.... ...++....+...+ ..++++++|+||.+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~ 74 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEE
Confidence 359999999 699999999999998 99988887764432111 11233211111223 45678899999988
Q ss_pred cc
Q 007951 186 IS 187 (583)
Q Consensus 186 vp 187 (583)
+.
T Consensus 75 ~g 76 (205)
T d1hdoa_ 75 LG 76 (205)
T ss_dssp CC
T ss_pred ec
Confidence 74
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.23 E-value=0.012 Score=56.00 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVI 183 (583)
.+.|+| ++|+|-|+|++|..+|+.|.+. |.++++.+.+...........|... .+..+. -.+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 356899 9999999999999999999998 9887765544333333444456653 344443 35799999
Q ss_pred EeccchH
Q 007951 184 LLISDAA 190 (583)
Q Consensus 184 Lavpd~a 190 (583)
-|--...
T Consensus 102 PcA~~~~ 108 (230)
T d1leha1 102 PCALGAV 108 (230)
T ss_dssp ECSCSCC
T ss_pred ccccccc
Confidence 8755443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.03 Score=49.48 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCEEEEEcc-chhHHHHHHHHHHhhhhhcCC-ceEEEEecCCc--ccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 111 ikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G-~~ViVg~r~~s--~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
+|||||||. |..|.-+.+.|.+.. ..- .++.....+.+ +............ .....+..+++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~---~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER---DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---GGGGSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC---CCCeeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEEec
Confidence 479999996 999999998766430 001 14433322211 1111111111110 011224568999999999
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|.+.-.++.+++... ..+.+|++.++.
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss~ 100 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAASS 100 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSST
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCcc
Confidence 988887777776542 222456666553
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.97 E-value=0.046 Score=49.22 Aligned_cols=75 Identities=21% Similarity=0.085 Sum_probs=40.4
Q ss_pred CEEEEEccchhHHHHH-HHHHHhhhhhcCCceEEEEecCCcccHH--------HHHHcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA--------EARAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A-~nLrdsl~~~g~G~~ViVg~r~~s~s~~--------~A~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
.||+|||.|+.|.+.+ ..+...+++. .+-+++. .+.+++..+ .+...+....-....|..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKL-YDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEE-ECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEEE-EcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999886533 3333321110 0125544 444432221 111112211011245788999999999
Q ss_pred EEeccc
Q 007951 183 LLLISD 188 (583)
Q Consensus 183 ILavpd 188 (583)
|++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 998754
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0099 Score=53.49 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=69.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH---HH-----HHHcCceecCCCcCCHhhhhccCCeE
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~---~~-----A~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
.||+|+|+ |.||.++++.+.+. .+++++.+..+..... +. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999996 99999999988765 1566655544321110 00 00112222 34567788899999
Q ss_pred EEeccchHHHHHHHHHHhcCCCCc-EEEEecCchhhhhhcccccCCCCccEEEeccCCCc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~~i~~p~dv~VI~v~PngPg 241 (583)
|=-+.|+...+.++....+ +. +|+=+.||+-..++. .-...+++++ ..+||+.-
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~-i~~~a~~ipi-~~apN~Sl 130 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQA-IRDAAADIAI-VFAANFSM 130 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHH-HHHHTTTSCE-EECSCCCH
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHH-HHHHcCCCCE-EEEccccH
Confidence 9999998888877754332 33 455567886322211 0012345555 46787753
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.87 E-value=0.044 Score=49.24 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=41.7
Q ss_pred CEEEEEccchhHHHHHH--HHHHhhhhhcCCceEEEEecCCcccHHH--------HHHcCceecCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~--nLrdsl~~~g~G~~ViVg~r~~s~s~~~--------A~~~G~~~~d~t~~d~~Eav~~ADI 181 (583)
+||+|||.|+.|.+.+. .|... .+ ..+.+++. .+.+++..+. ....+....-....|..|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~-~~-l~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT-PG-LSGSTVTL-MDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC-GG-GTTCEEEE-ECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc-cc-cCCCEEEE-EeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 79999999999976432 33322 00 01235554 4444332211 1112221101114688999999999
Q ss_pred EEEeccchH
Q 007951 182 VLLLISDAA 190 (583)
Q Consensus 182 VILavpd~a 190 (583)
|++++-...
T Consensus 80 Vv~~~~~g~ 88 (171)
T d1obba1 80 VINTAMVGG 88 (171)
T ss_dssp EEECCCTTH
T ss_pred Eeeeccccc
Confidence 999865443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.75 E-value=0.046 Score=49.43 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecC--------------CCcCCHhhhh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI 176 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d--------------~t~~d~~Eav 176 (583)
.||||.|+|.||+.+.+.|.+. ..++++.-++..+ .....+.+.++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6899999999999999999865 1456554444332 223445555542100 0023456667
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcE
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~Gai 207 (583)
+++|+|+=|++.....+-.+ .|++.|+-
T Consensus 78 ~~vDvViEcTG~f~~~~~~~---~hl~~G~k 105 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP---LYEKAGVK 105 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH---HHHHHTCE
T ss_pred ccCCEEEECCCCCCCHHHHH---HHHHcCCC
Confidence 78999999999876655444 34444543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.75 E-value=0.089 Score=45.83 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=62.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-C--CCcCCHhhhh-----cc
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N--GTLGDIYETI-----SG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d--~t~~d~~Eav-----~~ 178 (583)
.-.| .+|.|+|.|-+|...++-++.. |..+++..+.+++..+.+++.|.... + ....+..+.+ ..
T Consensus 26 ~~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g 98 (176)
T d2fzwa2 26 LEPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGG 98 (176)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCC
Confidence 3456 8999999999999999998887 87656666666777899999996431 0 0011222222 35
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.|+||-++..... ++.....+++|..+...
T Consensus 99 ~D~vid~~G~~~~---~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 99 VDYSFECIGNVKV---MRAALEACHKGWGVSVV 128 (176)
T ss_dssp BSEEEECSCCHHH---HHHHHHTBCTTTCEEEE
T ss_pred CcEeeecCCCHHH---HHHHHHhhcCCceeEEE
Confidence 8999999876543 34444456666544433
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.028 Score=51.05 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=56.7
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+. .|..++.-|... |..|++.... ..+..+.+++||+||.+
T Consensus 34 ~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~a 87 (166)
T d1b0aa1 34 DTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIVA 87 (166)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEEC
T ss_pred cccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhhh
Confidence 4788 9999999885 999999999887 8887665322 23556778899999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEec
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~ 212 (583)
+.-... +. .+.+|+|++|+++.
T Consensus 88 ~G~p~~---i~--~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 88 VGKPGF---IP--GDWIKEGAIVIDVG 109 (166)
T ss_dssp SCCTTC---BC--TTTSCTTCEEEECC
T ss_pred ccCccc---cc--ccccCCCcEEEecC
Confidence 874433 11 45789999888873
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.049 Score=44.32 Aligned_cols=65 Identities=20% Similarity=0.082 Sum_probs=49.6
Q ss_pred CEEEEEccchhHH-HHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~G~mG~-A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
|||=|||.|=+|. ++|+-|++. |+.|...++..++..+..++.|+... .....+-++++|+||..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEe
Confidence 7899999999997 789999998 99987766666566677788898641 22334556789999874
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.49 E-value=0.12 Score=46.01 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCc-C-CHhhhh-----cc
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SG 178 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~-~-d~~Eav-----~~ 178 (583)
.-.| .+|.|+|+|-+|...++-++.. |...++..+.++...+.|++.|...- +... . ...... ..
T Consensus 26 v~~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 26 VTPG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 3456 8999999999999999999988 87545555555667899999997531 1000 1 111111 35
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCC
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPN 205 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~G 205 (583)
+|+||-++.... .+++-...+++|
T Consensus 99 ~d~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 99 VDYSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp BSEEEESSCCHH---HHHHHHHTBCTT
T ss_pred CcEEEEecccch---HHHHHHHHhhcC
Confidence 799999887543 344444556554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.44 E-value=0.12 Score=45.96 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=53.6
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC--Hhhhh-----c
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----S 177 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d--~~Eav-----~ 177 (583)
+.-+| .+|.|+|+|-+|...++.++.. |...++..+.+++..+.|++.|...- +....+ ..+.. .
T Consensus 24 ~~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 24 KVTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 45567 8999999999999999999988 87545666666777899999997531 100111 22222 2
Q ss_pred cCCeEEEeccch
Q 007951 178 GSDLVLLLISDA 189 (583)
Q Consensus 178 ~ADIVILavpd~ 189 (583)
..|+||-++...
T Consensus 97 G~d~vid~~g~~ 108 (174)
T d1p0fa2 97 GVDYAVECAGRI 108 (174)
T ss_dssp CBSEEEECSCCH
T ss_pred CCcEEEEcCCCc
Confidence 478888887754
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.41 E-value=0.08 Score=46.40 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.1
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds 133 (583)
+||+|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 59999996 99999999999876
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.40 E-value=0.11 Score=46.38 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=52.5
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC--Hhhhh-----ccC
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----SGS 179 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d--~~Eav-----~~A 179 (583)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++.++.|++.|...- +..-.+ ..+.. ...
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccc
Confidence 456 8999999999999999999988 86444566666778999999998531 100011 11111 358
Q ss_pred CeEEEeccchH
Q 007951 180 DLVLLLISDAA 190 (583)
Q Consensus 180 DIVILavpd~a 190 (583)
|++|.++....
T Consensus 101 d~vi~~~g~~~ 111 (176)
T d1d1ta2 101 GYTFEVIGHLE 111 (176)
T ss_dssp CEEEECSCCHH
T ss_pred eEEEEeCCchH
Confidence 88888877543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.39 E-value=0.072 Score=48.08 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCc-ccHHHHHHcCceecCCC--------------cCCHhhh
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGT--------------LGDIYET 175 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s-~s~~~A~~~G~~~~d~t--------------~~d~~Ea 175 (583)
|++|||-|+|.+|+.+.+.|.+. .+++++.-++..+ .....+...++...... ..+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 47999999999999999988766 1356554444332 22344555554321000 1234556
Q ss_pred hccCCeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 176 v~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.+++|+|+-||+-....+- ..++++.|.-+++.
T Consensus 76 ~~~vDvViEcTG~f~~~~~---~~~hl~~G~K~vi~ 108 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKN---LKMYKEKGIKAIFQ 108 (171)
T ss_dssp HHTCSEEEECCSTTHHHHH---HHHHHHTTCEEEEC
T ss_pred hcCCCEEEEccCCCCCHHH---HHHHHHcCCCEEEE
Confidence 6789999999987655443 33445556544444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.36 E-value=0.072 Score=46.70 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=40.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCC--ceEEEEecCCcccHHHHHH------cCcee---cCCCcCCHhhhhcc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSD--IVVKVGLRKGSRSFAEARA------AGFTE---ENGTLGDIYETISG 178 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G--~~ViVg~r~~s~s~~~A~~------~G~~~---~d~t~~d~~Eav~~ 178 (583)
+||+|||. |..|.+++..|... + .+.. ..+.. .+.+ +...+++. ..... ......+..+++++
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~--~~~~~~~~L~l-~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSV--FGKDQPIILVL-LDIT-PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD 79 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTT--TCTTCCEEEEE-ECCG-GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHh--cCCCCccEEEE-ecCc-cchhhhhhhhhhhcccccccccccccCcccccccCC
Confidence 68999995 99999999998764 0 0001 13333 3322 22222221 11100 00013456789999
Q ss_pred CCeEEEec
Q 007951 179 SDLVLLLI 186 (583)
Q Consensus 179 ADIVILav 186 (583)
+|+|+++-
T Consensus 80 ~dvVVita 87 (154)
T d5mdha1 80 LDVAILVG 87 (154)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999965
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=94.04 E-value=0.024 Score=49.88 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=39.6
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCc--eEEEEecCC--cccHHHHHHc----Cceec-CCCcCCHhhhhccCCe
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~--s~s~~~A~~~----G~~~~-d~t~~d~~Eav~~ADI 181 (583)
.||+||| .|.+|.++|..|..+ ++ ++++.+... ...+..+... .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999987 65 555444221 1122222221 11100 0012343 45689999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99863
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.03 E-value=0.064 Score=47.17 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=59.6
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh-----ccCCeE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDLV 182 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav-----~~ADIV 182 (583)
.| .+|.|+|.|.+|...++-++.. |...++..+.++...+.+++.|...- +..-.+.++.. ...|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 46 8999999999999999999887 76555566666666888888886420 11111122222 236888
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|-++.... .++.....+++|-.++..
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEEC
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEEE
Confidence 88887643 345555666666655443
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.061 Score=48.85 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.++| |+|.|||-+ ..|..++.-|... |..|.+.... ..+..+.+++||+|+.+
T Consensus 36 ~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~a 89 (170)
T d1a4ia1 36 PIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVVA 89 (170)
T ss_dssp CCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEEC
T ss_pred cccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhhc
Confidence 4789 999999987 5999999999988 8877665432 23455677899999999
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+.-... ++ ...+|+|++|+|+ |++
T Consensus 90 ~G~~~~---i~--~~~vk~g~iviDv-gi~ 113 (170)
T d1a4ia1 90 TGQPEM---VK--GEWIKPGAIVIDC-GIN 113 (170)
T ss_dssp CCCTTC---BC--GGGSCTTCEEEEC-CCB
T ss_pred cccccc---cc--cccccCCCeEecc-Ccc
Confidence 885433 22 4568999999888 543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.92 E-value=0.058 Score=46.61 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=61.4
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHh----hhhccCCeEE
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETISGSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~----Eav~~ADIVI 183 (583)
+| .+|.|+|.|.+|...++.++.. |.+|++.. .++...+.+++.|+..- +....+.. +...+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~-~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVD-IGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccC-CCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 56 8999999999999999888887 88866554 44566788999987531 11112222 2234567777
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
.++... ..++...+.++++..+++.
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred eecCCH---HHHHHHHHHhccCCceEec
Confidence 766543 4566666677787766654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.06 Score=47.29 Aligned_cols=71 Identities=23% Similarity=0.158 Sum_probs=40.2
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH--cCcee-cCC--CcCCHhhhhccCCeEEEe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTE-ENG--TLGDIYETISGSDLVLLL 185 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~--~G~~~-~d~--t~~d~~Eav~~ADIVILa 185 (583)
|||+|||. |.+|.++|..|...+ +...++.+.+. .+.....+.. +.... ... ...+..+++++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~-~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECS-STTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEecc-cccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 69999995 999999998875330 11236555443 3333333332 11100 000 012335678899999997
Q ss_pred c
Q 007951 186 I 186 (583)
Q Consensus 186 v 186 (583)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.051 Score=48.28 Aligned_cols=75 Identities=13% Similarity=-0.016 Sum_probs=42.2
Q ss_pred CEEEEEccchhHHHHHHHHH-HhhhhhcCCceEEEEecCCcccHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 007951 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLr-dsl~~~g~G~~ViVg~r~~s~s~~~A~~-------~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
|||+|||.|+.|.+++.... ...+ ....-++.+. +.++...+.+.. ..... ....+..+++++||+|+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~-~~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVV 76 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISE-DVRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVI 76 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTT-TSCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhccc-ccCccEEEEE-ecCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEE
Confidence 68999999999988875422 2100 0001255444 444433332221 12211 11356788999999999
Q ss_pred EeccchH
Q 007951 184 LLISDAA 190 (583)
Q Consensus 184 Lavpd~a 190 (583)
+..-...
T Consensus 77 ita~~~~ 83 (162)
T d1up7a1 77 FQFRPGG 83 (162)
T ss_dssp ECCCTTH
T ss_pred EecccCC
Confidence 9876443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.74 E-value=0.1 Score=45.23 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh----ccCCe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDL 181 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav----~~ADI 181 (583)
.-.| .+|.|+|.|.+|...++-++.. |.+|++.. .++...+.+++.|...- +..-.+..+.+ ...|.
T Consensus 25 ~~~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~-~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~ 96 (166)
T d1llua2 25 ARPG-QWVAISGIGGLGHVAVQYARAM------GLHVAAID-IDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHG 96 (166)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred CCCC-CEEEEeeccccHHHHHHHHHHc------CCccceec-chhhHHHhhhccCccccccccchhHHHHHHHhhcCCcc
Confidence 3456 8999999999999999988887 88876554 44556789999987420 11122333332 23456
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++.++... +.++...+.++++-.++..
T Consensus 97 ~i~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 97 VLVTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccccc---hHHHHHHHHhcCCcEEEEE
Confidence 66665543 3455556677776655544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=93.63 E-value=0.074 Score=44.67 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=55.5
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeccc
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISD 188 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~----Eav~~ADIVILavpd 188 (583)
-|-|+|||..|..++..|+.. + +++-. .++...+.....|+..-.+...+.+ .-+.+|+.|++++++
T Consensus 2 HivI~G~g~~g~~l~~~L~~~------~--i~vi~-~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~ 72 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELRGS------E--VFVLA-EDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLES 72 (129)
T ss_dssp CEEEESCCHHHHHHHHTSCGG------G--EEEEE-SCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred EEEEECCCHHHHHHHHHHcCC------C--CEEEE-cchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence 377999999999999999755 4 43333 3444566667778643212222322 236789999999998
Q ss_pred hHHHHHHHHHHhcCCCC-cEEEEec
Q 007951 189 AAQADNYEKIFSCMKPN-SILGLSH 212 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~G-aiL~~a~ 212 (583)
....-.+-.....+.|. .++.-+.
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred hhhhHHHHHHHHHHCCCceEEEEEc
Confidence 77654443323333343 4555443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.029 Score=49.38 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=59.3
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCC-cCCH-hhhhccCCeEEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDI-YETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t-~~d~-~Eav~~ADIVIL 184 (583)
-.| .+|.|+|.|.+|...++-++.. |.+|++..+ ++...+.+++.|.... +.. ..+. +......|+|+.
T Consensus 26 ~~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~-~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 26 GPG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISR-SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEES-SSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred CCC-CEEEEECCCCcchhHHHHhhhc------ccccccccc-chhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEE
Confidence 356 8999999999999999988887 988776555 4556889999886320 000 0111 223345788888
Q ss_pred eccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 185 avpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
++...... .++.....++++-.++..
T Consensus 98 ~~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 98 CASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CCSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred EecCCccc-hHHHHHHHhhccceEEEe
Confidence 76532211 133445556665554433
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.52 E-value=0.043 Score=48.66 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=52.3
Q ss_pred CEEEEEc-cchhHHHHHHHHHHh--hhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEeccc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrds--l~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavpd 188 (583)
||||||| .|..|.-+.+.|.+. ++ ..++.....+. +..+....+............+..+++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~--~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQ--IGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSC--CSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEecccc--ccccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 6899999 689999988877642 11 12443222211 111111111110000001123557899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 189 ~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
..-.++.+++... ..+.+|+|.++
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSs 98 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSS
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCc
Confidence 9888888876542 12235776655
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.50 E-value=0.059 Score=48.45 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=52.4
Q ss_pred hhhhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHc----C--ceecCC-CcCCHhhhh
Q 007951 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENG-TLGDIYETI 176 (583)
Q Consensus 105 ~~~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~----G--~~~~d~-t~~d~~Eav 176 (583)
...|+| |+|-|.| -|-+|.++++.|.+. |.+|++..|+.++..+.+.+. . +...|- ...+.++++
T Consensus 18 ~~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 18 GGSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp TSCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence 456799 9999999 689999999999998 999888888755444333322 1 111010 112355678
Q ss_pred ccCCeEEEecc
Q 007951 177 SGSDLVLLLIS 187 (583)
Q Consensus 177 ~~ADIVILavp 187 (583)
.+.|+||.+..
T Consensus 91 ~~iDilin~Ag 101 (191)
T d1luaa1 91 KGAHFVFTAGA 101 (191)
T ss_dssp TTCSEEEECCC
T ss_pred cCcCeeeecCc
Confidence 89999998755
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.29 E-value=0.26 Score=43.06 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=53.9
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CC-Cc-CCHhhhh-----c
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TL-GDIYETI-----S 177 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~-t~-~d~~Eav-----~ 177 (583)
+.-+| .+|.|+|.|-+|...++-++.. |...++..+.+++..+.+.+.|.... +. .. ....+.. .
T Consensus 25 ~vk~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 25 KVTQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 44567 8999999999999999999987 76445566666677899999987531 00 00 1112211 2
Q ss_pred cCCeEEEeccchHH
Q 007951 178 GSDLVLLLISDAAQ 191 (583)
Q Consensus 178 ~ADIVILavpd~a~ 191 (583)
..|+||-++.....
T Consensus 98 G~D~vid~~G~~~~ 111 (176)
T d2jhfa2 98 GVDFSFEVIGRLDT 111 (176)
T ss_dssp CBSEEEECSCCHHH
T ss_pred CCCEEEecCCchhH
Confidence 57999999886544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.067 Score=46.84 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred hcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCC---HhhhhccCCeEE
Q 007951 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 108 l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d---~~Eav~~ADIVI 183 (583)
-.| .+|.|+|.|.+|...++-++.. |.++++..+. ++..+.+++.|.... + ..+ .....+..|++|
T Consensus 29 ~~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~-~~~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 29 GPG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEE
T ss_pred CCC-CEEEEeccchHHHHHHHHhhcc------cccchhhccc-hhHHHHHhccCCcEEEE--CchhhHHHHhcCCCceee
Confidence 356 8999999999999999999887 9887765554 445788888886420 1 111 223345689999
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
-++..... ++.....++++-.++..
T Consensus 99 d~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 99 NTVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ECCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeeecchh---HHHHHHHHhcCCEEEEe
Confidence 99874332 33344556665555444
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.07 E-value=0.33 Score=42.12 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=52.7
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcC--CHhhhh-----c
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG--DIYETI-----S 177 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~--d~~Eav-----~ 177 (583)
+.-+| .+|.|+|.|-.|...++.++.. |...++..+..+...+.+++.|.... +..-. ...+.. .
T Consensus 25 ~~k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 25 KVEPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccC
Confidence 34456 8999999999999999998877 65445566666677899999997421 00000 112222 2
Q ss_pred cCCeEEEeccchHH
Q 007951 178 GSDLVLLLISDAAQ 191 (583)
Q Consensus 178 ~ADIVILavpd~a~ 191 (583)
..|+|+-++-....
T Consensus 98 G~d~vid~~G~~~~ 111 (175)
T d1cdoa2 98 GVDFSLECVGNVGV 111 (175)
T ss_dssp CBSEEEECSCCHHH
T ss_pred CcceeeeecCCHHH
Confidence 47888888876443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.94 E-value=0.11 Score=47.10 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=64.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------cc
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~ 178 (583)
+.-.| .+|.|+|+|.+|...++-++.. |...++..+.++...+.|++.|.... +....+..+.+ ..
T Consensus 22 ~v~~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 22 GVGPG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCCC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCC
Confidence 33456 8999999999998888888766 66334444555667899999997531 11112332222 24
Q ss_pred CCeEEEeccch------------HHHHHHHHHHhcCCCCcEEEEe
Q 007951 179 SDLVLLLISDA------------AQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 179 ADIVILavpd~------------a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|++|-++--. ...+.++.....+++|-.|++.
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 79999887522 1245677767778887766655
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.89 E-value=0.12 Score=48.21 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=56.5
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|.+. +|.++|+.|.+. |++|++..|+.++..+...+.|-.. ..-.+|+
T Consensus 2 ~l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dl---- 60 (241)
T d2a4ka1 2 RLSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALEAEA----------IAVVADV---- 60 (241)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCSSE----------EEEECCT----
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCce----------EEEEecC----
Confidence 3789 9999999775 999999999999 9999887776443333333322110 0012333
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
..++.+.++++++...+.+=.+|+..+|.
T Consensus 61 s~~~~i~~~~~~i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 61 SDPKAVEAVFAEALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCccEecccccc
Confidence 44566677888887766554566666654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=92.75 E-value=0.3 Score=43.93 Aligned_cols=74 Identities=22% Similarity=0.074 Sum_probs=40.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc--eEEEEecCCccc--HHHHH--HcCcee---cCCCcCCHhhhhccCCe
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEAR--AAGFTE---ENGTLGDIYETISGSDL 181 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~--~ViVg~r~~s~s--~~~A~--~~G~~~---~d~t~~d~~Eav~~ADI 181 (583)
-||.|+|. |.+|.+++..|... .=.|... .+.+.+...... ...+. .+.... .-....+..++++++|+
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred cEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 58999996 99999999999864 0011111 232222221111 12221 111100 00114567889999999
Q ss_pred EEEec
Q 007951 182 VLLLI 186 (583)
Q Consensus 182 VILav 186 (583)
||++-
T Consensus 104 Vvi~a 108 (175)
T d7mdha1 104 ALLIG 108 (175)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99975
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.70 E-value=0.11 Score=45.15 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=57.7
Q ss_pred cCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~-~d~t~~d~~Eav------~~AD 180 (583)
.| .+|.|+|. |.+|...++-++.. |...++..+.+++..+.+++.|... -+....+..+.+ ...|
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 45 89999995 99999999888877 7633444555566788888888631 011112322222 2368
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+-++.... .++.....+++|-.++..
T Consensus 100 ~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 100 AVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 8888776432 334445566776655444
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.079 Score=45.73 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=30.0
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEe
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~ 147 (583)
.++| |+|.|||.|.+|..-+..|.+. |.+|+|..
T Consensus 10 ~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 10 QLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp CCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred eeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 3889 9999999999999999999998 88777664
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.17 E-value=0.026 Score=48.36 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=53.0
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeccchH
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav-~~ADIVILavpd~a 190 (583)
.+|.|+|+|++|.+++..++.+ .+++++.+.+.+++....- =.|+...+ ..+..+.+ +..++.++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~~-I~Gi~V~~--~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGRP-VRGGVIEH--VDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTCE-ETTEEEEE--GGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCCE-ECCEEEec--HHHHHHHHhhcccEEEEeCCHHH
Confidence 3799999999999999877543 2788877777655432221 13554310 12233333 45788999999988
Q ss_pred HHHHHHHHHh
Q 007951 191 QADNYEKIFS 200 (583)
Q Consensus 191 ~~~Vl~eI~~ 200 (583)
..++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.03 E-value=0.45 Score=41.13 Aligned_cols=101 Identities=19% Similarity=0.286 Sum_probs=62.5
Q ss_pred EEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeccchH
Q 007951 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (583)
Q Consensus 113 kIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E-av~~ADIVILavpd~a 190 (583)
||+|+| .|.||..++..+... .+++++.+.+.++. ..+ .-.++|+||=-+.|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~-------------------~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDP-------------------LSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCC-------------------THHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCc-------------------hhhhccccCCEEEEcccHHH
Confidence 799999 699999999887765 16777666653221 111 1246899999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhcc--cccCCCCccEEEeccCCCc
Q 007951 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSM--GLDFPKNIGVIAVCPKGMG 241 (583)
Q Consensus 191 ~~~Vl~eI~~~Lk~Ga-iL~~a~G~~i~~ie~~--~i~~p~dv~VI~v~PngPg 241 (583)
..+.++.... .|. +|+=+.|++-..++.. ...-.++++++ ..||+.-
T Consensus 57 ~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil-~apNfSl 106 (135)
T d1yl7a1 57 VMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTSVL-IAPNFTS 106 (135)
T ss_dssp HHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEE-ECSCCGG
T ss_pred HHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHhcCCCCEE-EcCCccH
Confidence 8888876543 233 4556678863322210 00012344444 6777754
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.69 E-value=0.06 Score=47.02 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=54.5
Q ss_pred CEEEEEcc-chhHHHHHHHHHHh-hhhhcCCceEEEEecC--CcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrds-l~~~g~G~~ViVg~r~--~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
++|||||. |..|.-+.+-|.+. ++ ..++.....+ ..+.. ..+..... ......+...++|++|+++|
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~~Gk~i----~~~~~~~~-~~~~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAGQRM----GFAESSLR-VGDVDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTTCEE----EETTEEEE-CEEGGGCCGGGCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeecccCCcce----eeccccch-hccchhhhhccceEEEecCC
Confidence 68999996 99999999888643 11 1244332221 11111 11111000 01112345678999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.....++..++. +.|..|+|.++.
T Consensus 74 ~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 74 AEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred cchhhhhccccc---cCCceEEeechh
Confidence 888877777654 467888888775
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.48 E-value=0.036 Score=50.42 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH-----HcCcee-cCCCcCCHhhhhcc
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----AAGFTE-ENGTLGDIYETISG 178 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~-----~~G~~~-~d~t~~d~~Eav~~ 178 (583)
..++| |++.|||-++ .|..+|.-|... |..|.+............. ..+... ...+-....+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 57899 9999999885 599999999887 8777665443221100000 000000 00000125667778
Q ss_pred CCeEEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 179 ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
||+||.+++..... + =.+++|+|++++|+..
T Consensus 98 aDIvIsavG~p~~~--i--~~d~ik~GavvIDvGi 128 (171)
T d1edza1 98 SDVVITGVPSENYK--F--PTEYIKEGAVCINFAC 128 (171)
T ss_dssp CSEEEECCCCTTCC--B--CTTTSCTTEEEEECSS
T ss_pred CCEEEEccCCCccc--c--ChhhcccCceEeeccc
Confidence 99999999864320 0 0356799999998853
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=91.22 E-value=0.1 Score=46.28 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+||.|||.|..|.+.|..|.+. |++|.|..+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7899999999999999999998 9999888764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.17 E-value=0.1 Score=46.01 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.1
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
|||+|||.|.-|.+-|..|++. |++|.|..+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 8999999999999999999998 9998887653
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=0.31 Score=43.96 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=53.3
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEe--cCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~--r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
|+|||||| .|..|.-+.+-|.+. . .+++.... +...+........-.....-...+.++..+++|+|++++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 47899999 689999888877653 1 33443322 2222333222111000000012456667778999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
...-.+... .. .+..|+|.++
T Consensus 76 ~~~s~~~~~----~~-~~~~VIDlSa 96 (176)
T d1vkna1 76 AGASYDLVR----EL-KGVKIIDLGA 96 (176)
T ss_dssp TTHHHHHHT----TC-CSCEEEESSS
T ss_pred cHHHHHHHH----hh-ccceEEecCc
Confidence 887655443 33 4566777665
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=90.58 E-value=0.27 Score=46.24 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|..++..+.+.+.|-.. ..-.+|+
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dv---- 60 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEEGAATARELGDAA----------RYQHLDV---- 60 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTGGGE----------EEEECCT----
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce----------EEEEccc----
Confidence 3789 999999977 5999999999998 9998887776444333333322110 0112343
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+.++...++++++...+.+=.+|+..+|+.
T Consensus 61 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 61 TIEEDWQRVVAYAREEFGSVDGLVNNAGIS 90 (254)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEecCccc
Confidence 455666778887766553323577777763
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.54 E-value=0.15 Score=44.97 Aligned_cols=88 Identities=24% Similarity=0.207 Sum_probs=59.8
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhh------hhccC
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE------TISGS 179 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~E------av~~A 179 (583)
.-+| ++|.|.|. |.+|....+-++.. |.+|++..+. +...+.+++.|... +.+..+ .-..+
T Consensus 25 ~~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 25 ARPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEE----AATYAEVPERAKAWGGL 92 (171)
T ss_dssp CCTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSE
T ss_pred CCCC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccce----eeehhhhhhhhhccccc
Confidence 3467 89999995 99999998888877 8887766654 44568888888753 222222 22458
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
|+||-++.+. +++....++++-.++..
T Consensus 93 D~v~d~~G~~-----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 93 DLVLEVRGKE-----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEEECSCTT-----HHHHHTTEEEEEEEEEC
T ss_pred cccccccchh-----HHHHHHHHhcCCcEEEE
Confidence 9999887642 44555677776655443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.52 E-value=0.31 Score=46.49 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=49.4
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHH--HHcCceecCCCcCC----HhhhhccCCeEEE
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA--RAAGFTEENGTLGD----IYETISGSDLVLL 184 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A--~~~G~~~~d~t~~d----~~Eav~~ADIVIL 184 (583)
|+|.|+| .|.+|.+++..|.+. |++|++..|+.++..... ...|+...-+...+ ...+...+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 8999999 599999999999998 999888877543322222 22344321111223 3457788999998
Q ss_pred eccchHH
Q 007951 185 LISDAAQ 191 (583)
Q Consensus 185 avpd~a~ 191 (583)
..++...
T Consensus 78 ~~~~~~~ 84 (350)
T d1xgka_ 78 NTTSQAG 84 (350)
T ss_dssp CCCSTTS
T ss_pred ecccccc
Confidence 8775543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.25 E-value=0.38 Score=44.68 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=55.2
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+.+.. .+ .+|+ .
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~l~~~~~~~~~~-----------~~-~~Dv----~ 59 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGPLREAAEAVGAH-----------PV-VMDV----A 59 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTTCE-----------EE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCe-----------EE-EEec----C
Confidence 688 999899975 5999999999998 999888777644333333332222 11 2443 3
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++.+.++++++...+.+=.+|+..+|+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 4556667888776655432367777775
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.86 E-value=0.38 Score=44.88 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=56.2
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+.+-. .. .-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~---------~~-~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADA---------AR-YVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGG---------EE-EEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCc---------ce-EEEeec----
Confidence 4788 988888975 5999999999998 999888777654433333332211 00 112342
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 34556667888877665443467777776
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.43 Score=45.74 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=60.1
Q ss_pred hhhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
+.-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+..-. . .......++.
T Consensus 7 ~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~-~~~~~~~~~~ 70 (297)
T d1yxma1 7 PGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------L-PPTKQARVIP 70 (297)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------S-CTTCCCCEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------h-ccccCceEEE
Confidence 567999 999999976 5999999999998 999988877644433333321100 0 0012344554
Q ss_pred Ee---ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 184 La---vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+. +.++.+.++++++...+.+=.+|+..+|.
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 43 34556667888877666544467766665
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=89.66 E-value=0.34 Score=42.27 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred hcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccH----HHHHHcCceecCCCcCCHhhhhc
Q 007951 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (583)
Q Consensus 108 l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~----~~A~~~G~~~~d~t~~d~~Eav~ 177 (583)
|+| +||++||=| ++-.|++..+..- |+++.+..... .... +.+.+.|... ....+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSV--SFTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE--EEESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCce--EEEecHHHhhh
Confidence 578 999999954 6999999988887 88876654431 1111 2333334321 01568899999
Q ss_pred cCCeEEEecc
Q 007951 178 GSDLVLLLIS 187 (583)
Q Consensus 178 ~ADIVILavp 187 (583)
++|+|+...-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997553
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.48 E-value=0.46 Score=41.32 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=59.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccC
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~A 179 (583)
-+| .+|.|+|. |.+|.+..+-++.. |.+|++..++ ++..+.+++.|...- +..-.+..+.+ +..
T Consensus 27 ~~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 27 KAG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCE
T ss_pred CCC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCc
Confidence 356 89999995 99999999888887 9888766654 445788888887420 11112333332 236
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEE
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~ 210 (583)
|+|+-++... .++...+.++++-.++.
T Consensus 99 d~v~d~~g~~----~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 99 DIIIEMLANV----NLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEEEESCHHH----HHHHHHHHEEEEEEEEE
T ss_pred eEEeecccHH----HHHHHHhccCCCCEEEE
Confidence 8888777643 45555566777655443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.40 E-value=0.16 Score=48.50 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
..+|+|+|||.|.-|.+.|..|++. |.+++|++..+.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3469999999999999999999876 2235888877653
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.38 E-value=0.36 Score=43.34 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=49.9
Q ss_pred hhhcCCCEEEEEcc--chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHH----HHHcCceecCCCcCCHhhh
Q 007951 106 DAFNGINQIGVIGW--GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~--G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~----A~~~G~~~~d~t~~d~~Ea 175 (583)
|.|+| .||++||= -++..|++..+..- |.++.+....+ +...+. +...|... ....+.+++
T Consensus 1 k~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea 71 (185)
T d1dxha2 1 KPLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL--TLTEDPKEA 71 (185)
T ss_dssp SCGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEE--EEESCHHHH
T ss_pred CCCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeE--EEEeChhhc
Confidence 35788 89999994 48999999998887 98887765432 222232 23344331 115688999
Q ss_pred hccCCeEEEec
Q 007951 176 ISGSDLVLLLI 186 (583)
Q Consensus 176 v~~ADIVILav 186 (583)
++++|+|..-+
T Consensus 72 i~~aDvVyt~~ 82 (185)
T d1dxha2 72 VKGVDFVHTDV 82 (185)
T ss_dssp TTTCSEEEECC
T ss_pred cccccEEEeeh
Confidence 99999988754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=89.37 E-value=0.18 Score=45.49 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+||+|||.|.-|.+.|..|++. |++|+|..+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999998 9999888764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=89.15 E-value=0.96 Score=41.64 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=54.7
Q ss_pred hhcCCCEEEEEcc-c--hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~-G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.||| |++-|.|. | -||.++|+.|.+. |.+|++..++. +..+.+.+. .+....+.++.
T Consensus 2 ~L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~l------------~~~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRPI------------AQELNSPYVYE 61 (274)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHHH------------HHHTTCCCEEE
T ss_pred cCCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHH------------HhhCCceeEee
Confidence 4789 99999997 4 3999999999998 99998877753 223332221 11122233333
Q ss_pred Ee-ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 184 LL-ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 184 La-vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
.- +-+....++++++...+.+=.+++..+|..
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred ecccchhhHHHHHHHHHHHcCCCCeEEeecccc
Confidence 32 334555667777776654433456666653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=89.11 E-value=0.18 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.2
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
|||+|||.|.-|.+-|..|.+. |++|.|..+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999887654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.95 E-value=0.17 Score=43.81 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~ 149 (583)
+||+|||.|..|..-|..|++. |+ +|.+..+.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~ 37 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQ 37 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEec
Confidence 8999999999999999999998 98 57777664
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.86 E-value=0.32 Score=45.60 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=53.8
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.++ .+++.+. +.. .......+ .+|+ .
T Consensus 4 L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~~~-l~~~~~~-~~~----~~~~~~~~-~~D~----s 65 (258)
T d1ae1a_ 4 LKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNEKE-LDECLEI-WRE----KGLNVEGS-VCDL----L 65 (258)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCCEEEE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCceEE-Eeec----C
Confidence 689 99999994 57999999999999 9998887776433 2332221 110 00000111 2343 4
Q ss_pred cchHHHHHHHHHHhcC-CCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~L-k~GaiL~~a~G~ 214 (583)
.++...++++++...+ .+-.+|+..+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 66 SRTERDKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeccccc
Confidence 4555667778777665 233456666665
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.57 E-value=0.48 Score=41.58 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=46.4
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecC----CcccHHHHHHc----CceecCCCcCCHhhhhcc
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA----GFTEENGTLGDIYETISG 178 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~----~s~s~~~A~~~----G~~~~d~t~~d~~Eav~~ 178 (583)
|+| +||++||-| ++..|++..|..- |.++.+.... .....+.+.+. +... ....+..+++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 688 999999976 6778888888776 8887766443 22223333332 2211 115688999999
Q ss_pred CCeEEEe
Q 007951 179 SDLVLLL 185 (583)
Q Consensus 179 ADIVILa 185 (583)
+|+|+.-
T Consensus 73 adviy~~ 79 (163)
T d1pvva2 73 ADVIYTD 79 (163)
T ss_dssp CSEEEEC
T ss_pred ccEEeec
Confidence 9998864
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.48 E-value=0.34 Score=41.99 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHh
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDS 133 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrds 133 (583)
+++|.|.| .|.+|.++++.|.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~ 26 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG 26 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT
T ss_pred CCEEEEECCccHHHHHHHHHHHHC
Confidence 58999999 699999999999988
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.44 E-value=0.59 Score=43.49 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=55.3
Q ss_pred hhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE-
Q 007951 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL- 184 (583)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL- 184 (583)
-|+| |++-|.|.+. +|.++|+.|.+. |.+|++..++.++..+.+.+.. . + . ..+++.+
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~-~----------~-~-g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKVG-K----------E-F-GVKTKAYQ 65 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHHH-H----------H-H-TCCEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-H----------H-h-CCceEEEE
Confidence 3789 9998999764 999999999998 9998888876554333332210 0 0 0 1122222
Q ss_pred --eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 --LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 --avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+.++...++++++...+.+=.+|+..+|+
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence 245566667888877665432346666665
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.29 E-value=0.17 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
|+|+|||.|.-|.+-|..|.+. |++|.+..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999998 9998887654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.25 E-value=0.45 Score=44.43 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=55.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.++..+.+.+.|-.. ..-.+|+
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~Dv---- 61 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELGERS----------MFVRHDV---- 61 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE----------EEECCCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCCe----------EEEEeec----
Confidence 3789 988888965 5999999999998 9998877765433333333322110 0112332
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 62 SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 34556667888776665444567777776
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.20 E-value=0.5 Score=44.23 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=56.0
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.++..+.+.+.+-. .....+ .+|+
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~~-~~Dv---- 63 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADDHGQKVCNNIGSP-------DVISFV-HCDV---- 63 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCCT-------TTEEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhcCC-------CceEEE-EccC----
Confidence 4789 998888965 5999999999998 999888777544332333222110 000111 2443
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++.+..+++++...+.+=.+|+..+|+
T Consensus 64 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 45666777888877655443467777775
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.18 E-value=0.25 Score=43.15 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=52.7
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCc---eEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~---~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILavp 187 (583)
-||||||. |-.|.-+.+-|.+. .+ ++.... . .++..+........ .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~-s-~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLA-S-ARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEE-C-GGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEec-c-cccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 58999997 99999998766543 32 222221 1 11111111111110 0001223456678999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+....+...+.. .+|..|+|.++-
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred ccchhhHHhhhc---cccceehhcChh
Confidence 888777766543 467888887764
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.16 E-value=0.24 Score=43.21 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=44.9
Q ss_pred hcCCCEEEEEccch---hHHHHHHHHHHhhhhhcCCceEEEEecCC--cccHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 007951 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (583)
Q Consensus 108 l~gikkIgIIG~G~---mG~A~A~nLrdsl~~~g~G~~ViVg~r~~--s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIV 182 (583)
|+| .||+|||=++ ...|++..+..- |.++++...+. ..........|... ....++.++++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPV--KEVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCE--EEESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeE--EEEeCHHHHhhcCCeE
Confidence 578 9999999653 899999988876 87654433321 12223333334321 1156889999999998
Q ss_pred EEe
Q 007951 183 LLL 185 (583)
Q Consensus 183 ILa 185 (583)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.09 E-value=0.23 Score=47.81 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.2
Q ss_pred cCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 109 ~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
|. |||+|||.|.-|.+.|..|.+. |++|.|....
T Consensus 1 k~-KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~ 34 (314)
T d2bi7a1 1 KS-KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQR 34 (314)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECC
Confidence 45 8999999999999999999988 9998887654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.05 E-value=0.24 Score=41.46 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.5
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.||||||.|..|.-+++..++- |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999987 9998877654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=87.71 E-value=0.3 Score=44.96 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.4
Q ss_pred hhcCCCEEEEEcc-ch--hHHHHHHHHHHhhhhhcCCceEEEEecCCccc
Q 007951 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~--mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s 153 (583)
.|+| |++-|.|. |+ ||.++|+.|.+. |.+|++..++..+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 4789 99999996 65 999999999998 99988877765443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=87.69 E-value=0.34 Score=43.65 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=33.5
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
+.-+. |+|+|||.|.-|.+-|..|.+. |++|.+..+.+
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS 76 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence 56667 9999999999999999999998 99999987653
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.68 E-value=0.56 Score=43.73 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=56.6
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|+| |++-|.|. +-+|.++|+.|.+. |.+|++..++.++..+.+.+.|-.. .. -.+|+ +
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~---------~~-~~~Dv----t 61 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIGPAA---------CA-IALDV----T 61 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHCTTE---------EE-EECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce---------EE-EEeeC----C
Confidence 788 88889996 47999999999998 9998888776444444444433211 01 12444 4
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccc
Confidence 5666677888876655333367777775
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=1.1 Score=38.27 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=67.4
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||-|-|. |.+|.-+++.+++. |-+|+.|...+..-. .-.|+.. ..+.+|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999997 99999999999998 889888877632111 1246665 567888765 68999999998
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEecCchhhh
Q 007951 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (583)
Q Consensus 189 ~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~ 218 (583)
....+ +++.+...++ .++++.-|+.++.
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~D 102 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTLD 102 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHHH
Confidence 87765 5555655553 3677888887554
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=0.33 Score=45.44 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=36.9
Q ss_pred ccccccchhhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCc
Q 007951 98 RDLFNLLPDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (583)
Q Consensus 98 r~~f~~~~~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s 151 (583)
++.| -++.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+.+
T Consensus 4 ~~~f--~~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 4 NEEF--RPEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKE 49 (269)
T ss_dssp SSCC--CGGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CccC--CccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 3456 3566999 9999999875 999999999998 999888877643
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=87.40 E-value=0.75 Score=40.63 Aligned_cols=95 Identities=11% Similarity=0.212 Sum_probs=55.4
Q ss_pred CCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEE-EecC----CcccHHHHHH--cCceec-CCCcCCHhhhhccCCe
Q 007951 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK----GSRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (583)
Q Consensus 111 ikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViV-g~r~----~s~s~~~A~~--~G~~~~-d~t~~d~~Eav~~ADI 181 (583)
|+||+||| .|-.|.-+.+-|.+. + .+++.. ..+. ..+....... .+.... -....+..+...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P----~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-P----HMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-T----TEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-C----CCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 47999999 799999998887763 1 344432 2221 1122222111 111100 0001233445678999
Q ss_pred EEEeccchHHHHHHHHHHhcCCCCcEEEEecC
Q 007951 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (583)
Q Consensus 182 VILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G 213 (583)
+|+|+|+....+....+. +.|..|++.++
T Consensus 76 vf~alp~~~s~~~~~~~~---~~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFL---QAGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred eeccccchhHHHHhhhhh---hcCceeecccc
Confidence 999999988887777654 35777777765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.38 E-value=0.41 Score=44.13 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.8
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEe
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~ 147 (583)
.+.|++ .+|.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 61 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLD 61 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 456888 9999999999999999999988 77 444433
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=87.37 E-value=0.69 Score=43.47 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=30.4
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEec
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r 148 (583)
..|+| ++|+|=|+|+.|...|+-|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 35789 9999999999999999999988 887654443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.30 E-value=0.39 Score=44.06 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=37.0
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHH
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~ 159 (583)
+.||| |.+-|.|.+ -+|.++|+.|.+. |++|++..|+.++..+.+.+
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHH
Confidence 35899 999999976 5999999999998 99988888776554444443
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.22 E-value=0.84 Score=39.51 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=68.8
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||-|-|. |.+|.-+++.+++. |-+++.|...+..-. .-.|+.. ..+..|+++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999997 99999999999999 889888876532111 1146655 567888876 79999999999
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEecCchhhhh
Q 007951 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGHL 219 (583)
Q Consensus 189 ~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~i 219 (583)
....+ +++.+...++ .+|.+.-|+.++.+
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~Dm 112 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQDM 112 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHHH
Confidence 88765 5555665553 36778888875543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=87.03 E-value=1.1 Score=41.50 Aligned_cols=86 Identities=14% Similarity=0.061 Sum_probs=54.7
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.++...+.. +..++.|-.. . .-.+|+
T Consensus 3 L~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~g~~~---------~-~~~~Dv---- 61 (247)
T d2ew8a1 3 LKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPAPEAEAAIRNLGRRV---------L-TVKCDV---- 61 (247)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCHHHHHHHHHTTCCE---------E-EEECCT----
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCchHHHHHHHHHcCCcE---------E-EEEeeC----
Confidence 789 988899975 5999999999998 999888877643322 2222222110 0 112443
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++....+++++...+.+=.+|+..+|+
T Consensus 62 s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45566667888876655333467777775
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=86.98 E-value=0.62 Score=44.14 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=56.2
Q ss_pred cccccccchhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhh
Q 007951 97 GRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (583)
Q Consensus 97 ~r~~f~~~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav 176 (583)
..+.|.......+| +||++||+ + .....+++. +.++.|..+.. + .|... ....++++
T Consensus 109 ~~d~~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p-~-------~gd~p----~~~~~~lL 165 (251)
T d2h1qa1 109 MNDPFIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSP-E-------EGDYP----LPASEFIL 165 (251)
T ss_dssp -CCHHHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSC-C-------TTCEE----GGGHHHHG
T ss_pred cccchhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCC-C-------CCCCC----chHHHHhh
Confidence 35678877788889 99999987 4 455667877 77888877652 1 23332 23467899
Q ss_pred ccCCeEEEeccchHHHHHHHHHHhcCCCCcEE
Q 007951 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (583)
Q Consensus 177 ~~ADIVILavpd~a~~~Vl~eI~~~Lk~GaiL 208 (583)
++||+||+.= -...-..++.|..+.++...|
T Consensus 166 p~aD~viiTG-sTlvN~Tl~~LL~~~~~a~~v 196 (251)
T d2h1qa1 166 PECDYVYITC-ASVVDKTLPRLLELSRNARRI 196 (251)
T ss_dssp GGCSEEEEET-HHHHHTCHHHHHHHTTTSSEE
T ss_pred hcCCEEEEEe-chhhcCCHHHHHHhCCcCCEE
Confidence 9999988742 222233445555554444433
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=86.92 E-value=0.67 Score=41.27 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred hhhcCCCEEEEEccc--hhHHHHHHHHHHhhhhhcCCceEEEEecCC----ccc----HHHHHHcCceecCCCcCCHhhh
Q 007951 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRS----FAEARAAGFTEENGTLGDIYET 175 (583)
Q Consensus 106 ~~l~gikkIgIIG~G--~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s----~~~A~~~G~~~~d~t~~d~~Ea 175 (583)
|.|+| .||++||=| ++..|++..+..- |.++.+.-..+ +.. .+.+...|... ....+.+++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 46788 899999955 7999999988887 88877664431 121 23344445432 115688999
Q ss_pred hccCCeEEEecc
Q 007951 176 ISGSDLVLLLIS 187 (583)
Q Consensus 176 v~~ADIVILavp 187 (583)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999987443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.91 E-value=0.76 Score=39.77 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~-d~t~~d~~Eav------~~AD 180 (583)
+| .+|.|+| .|.+|...++-++.. |.++++..+.. +..+.+++.|...- +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 56 8999988 499999999988887 88887776654 45788888886420 11122333333 3589
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEe
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a 211 (583)
+|+-++..+. +++....++++..++..
T Consensus 97 ~v~d~~g~~~----~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGEA----IQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTHH----HHHHHHTEEEEEEEEEC
T ss_pred EEEecccchH----HHHHHHHhcCCCEEEEE
Confidence 9999988543 34444566666555443
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.83 E-value=0.41 Score=41.41 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=50.0
Q ss_pred hcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCC----cccHHHHHHcCceecCCCcCCHhhhhccCC
Q 007951 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 108 l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~----s~s~~~A~~~G~~~~d~t~~d~~Eav~~AD 180 (583)
|+| .||+|||= ++...|++..+..- |.++.+..... +.....+.+.+... ....|+.++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKV--VETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCE--EEESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccc--eeecCHHHhhccCc
Confidence 578 99999997 57899999998876 88877765432 22234444554431 11568899999999
Q ss_pred eEEEecc
Q 007951 181 LVLLLIS 187 (583)
Q Consensus 181 IVILavp 187 (583)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 9887654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=86.72 E-value=0.68 Score=42.87 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=53.3
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|..++..+.+.+.+-.. ..+ .+|+ +
T Consensus 2 l~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~~~~---------~~~-~~Dv----~ 60 (243)
T d1q7ba_ 2 FEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLGANG---------KGL-MLNV----T 60 (243)
T ss_dssp CTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGE---------EEE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhCCCC---------cEE-EEEe----c
Confidence 688 888888965 6999999999998 9998877765443333333322110 001 1332 3
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++...++++++...+.+=.+|+..+|.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 61 DPASIESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred CHHHhhhhhhhhhcccCCcceehhhhhh
Confidence 4556667888877655332356666665
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=86.38 E-value=0.91 Score=41.24 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=45.8
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcc-cH------HHHHHcCceecCCCcCC---HhhhhccCC
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLGD---IYETISGSD 180 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~-s~------~~A~~~G~~~~d~t~~d---~~Eav~~AD 180 (583)
+||.|+| .|.+|..++..|.+. |++|++..|.... .. ......++....+...+ ..+++.++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 599999999999998 9998877775321 11 11223344321111222 345677788
Q ss_pred eEEEeccch
Q 007951 181 LVLLLISDA 189 (583)
Q Consensus 181 IVILavpd~ 189 (583)
.++.+.++.
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 888776543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.41 Score=48.74 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=54.5
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecCC-------------------cccHH---HHHHc-
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~~-------------------s~s~~---~A~~~- 160 (583)
...|++ .||.|||+|-+|..++++|..+ |+ ++.+.+... .++.. ...+.
T Consensus 32 ~~~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n 104 (426)
T d1yovb1 32 QFLLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV 104 (426)
T ss_dssp HHHHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred HHHHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC
Confidence 355788 9999999999999999999987 66 444443210 01111 11111
Q ss_pred -Cc--eecCCCc-CCHhhhhccCCeEEEeccchHHHHHHHHHH
Q 007951 161 -GF--TEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (583)
Q Consensus 161 -G~--~~~d~t~-~d~~Eav~~ADIVILavpd~a~~~Vl~eI~ 199 (583)
.+ ....... ....+.+++.|+||.++-+-.....+.+..
T Consensus 105 p~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 105 PNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp TTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred CCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 11 1101111 123467899999999998877777777643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.05 E-value=1.3 Score=41.00 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=54.2
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE--
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-- 184 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-- 184 (583)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..+.+.+..+...+. +. + -...+++.+
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~-~~----------~-~~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRAG-LA----------A-QHGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHHH-HH----------H-HHTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-HH----------H-hcCCcEEEEEC
Confidence 688 888787866 4999999999998 999888777654333332211 00 0 011223322
Q ss_pred -eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 -LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 -avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+.++.+.++++++...+.+=.+|+..+|+
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 234556667888776655433467777876
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=85.92 E-value=0.55 Score=43.96 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=55.0
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe-
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa- 185 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.++ .+.+.+. ..+...+..++.+.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~~-----------~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEG-LEASKAA-----------VLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-----------HHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-----------HHhhCCCCeEEEEec
Confidence 688 888888976 5999999999998 9998887775432 2222111 11111223333332
Q ss_pred --ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 --vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 34566667888877665433467777775
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.69 E-value=0.61 Score=43.56 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=53.6
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEec
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILav 186 (583)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+. +.. ....... -.+|+ +
T Consensus 6 L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~-~~~----~g~~~~~-~~~Dv----~ 67 (259)
T d2ae2a_ 6 LEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKE-LNDCLTQ-WRS----KGFKVEA-SVCDL----S 67 (259)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCEEEE-EECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCceE-EEeeC----C
Confidence 678 999999976 4999999999998 9998887765332 3222211 110 0000001 12333 3
Q ss_pred cchHHHHHHHHHHhcCC-CCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk-~GaiL~~a~G~ 214 (583)
.++...++++++...+. +=.+|+..+|+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 68 SRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 45566678888776654 33467777775
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.67 E-value=1.8 Score=40.10 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=55.8
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+-||| |++-|.|.+ -+|.++|+.|.+. |.+|++..|..++..+.+.+. . +.-...+++.+
T Consensus 6 ~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~l~~~~~~l--~----------~~~~~~~~~~~ 66 (257)
T d1xg5a_ 6 ERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGNIEELAAEC--K----------SAGYPGTLIPY 66 (257)
T ss_dssp GGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------HTTCSSEEEEE
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------hcCCCceEEEE
Confidence 45899 999999976 7999999999998 999887776533222222211 1 00011233332
Q ss_pred ---eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 ---LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 ---avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
...++...++++++...+.+=.+|+..+|+
T Consensus 67 ~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 67 RCDLSNEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 245566677888776655332367777776
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.11 E-value=1.3 Score=41.07 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=56.6
Q ss_pred hhhcCCCEEEEEccch-hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
+-|.| |.|-|.|.+. +|.++|+.|.+. |.+|++..++.++..+.+.+. . + ...++..+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~~--~----------~--~~~~~~~~ 61 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAKC--K----------G--LGAKVHTF 61 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------H--TTCCEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------h--cCCcEEEE
Confidence 45889 9998999886 999999999998 999988877644322222221 1 1 01122222
Q ss_pred e---ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 185 L---ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 185 a---vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
. +.++.+..+++++...+.+=.+|+..+|+.
T Consensus 62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 1 334455667888776665444677777764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=85.09 E-value=0.76 Score=42.31 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=51.8
Q ss_pred hhcCCCEEEEEccch---hHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 007951 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (583)
Q Consensus 107 ~l~gikkIgIIG~G~---mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVI 183 (583)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..+. ++..+.+.+..-. ... .. .-.+|+
T Consensus 5 ~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~-~~~~~~~~~~~~~-----~~~-~~-~~~~D~-- 67 (256)
T d1ulua_ 5 DLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA-ERLRPEAEKLAEA-----LGG-AL-LFRADV-- 67 (256)
T ss_dssp CCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHHHH-----TTC-CE-EEECCT--
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc-HHHHHHHHHhhhc-----cCc-cc-cccccc--
Confidence 4789 9999999753 999999999998 9998777665 3333333321100 000 00 011222
Q ss_pred EeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 184 Lavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 68 --~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 68 --TQDEELDALFAGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp --TCHHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred --CCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 33455566777766554321245666665
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.08 E-value=0.7 Score=43.14 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=55.6
Q ss_pred hhhhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHhhhhccC
Q 007951 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGS 179 (583)
Q Consensus 105 ~~~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~~Eav~~A 179 (583)
+..|+| |++-|.| .+-+|.++|+.|.+. |.+|++..++.++..+... +.|... ..-.+
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~----------~~~~~ 75 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTESAEEVVAAIKKNGSDA----------ACVKA 75 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHHHHHHTTCCE----------EEEEC
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHHHHHHHHHHHhhCCce----------eeEeC
Confidence 466999 9999999 568999999999998 9998887776544333222 122110 01123
Q ss_pred CeEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 180 DIVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
|+ ..++...++++++...+.+=.+++..+|.
T Consensus 76 D~----~~~~~v~~~~~~~~~~~g~idilV~nag~ 106 (272)
T d1g0oa_ 76 NV----GVVEDIVRMFEEAVKIFGKLDIVCSNSGV 106 (272)
T ss_dssp CT----TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CC----CCHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 32 34455566777776655433456666664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.07 E-value=0.63 Score=43.66 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEe
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILa 185 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++ .+.+.+. +.. . -.+...+ .-.+|+
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~-l~~~~~~-l~~-~--~~~~~~~~~~~~Dv---- 66 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSER-LEETRQI-ILK-S--GVSEKQVNSVVADV---- 66 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHT-T--TCCGGGEEEEECCT----
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh-c--CCCCCceEEEEccC----
Confidence 789 999999965 5999999999998 9998888775433 2222211 110 0 0000110 112232
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|.
T Consensus 67 s~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 34556667888776655433467777775
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.95 E-value=1.1 Score=41.48 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=54.2
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE--
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-- 184 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-- 184 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.++..+.+.+. . +.. ..+++.+
T Consensus 3 l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l--~----------~~~-g~~~~~~~~ 62 (251)
T d1vl8a_ 3 LRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQKL--T----------EKY-GVETMAFRC 62 (251)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------HHH-CCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------HHh-CCcEEEEEc
Confidence 688 999999976 5999999999998 999888877644332222211 0 000 1222222
Q ss_pred -eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 -LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 -avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 63 DVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 134556667788776655332367777775
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.87 E-value=1.6 Score=37.29 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=66.6
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeccc
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~--~ADIVILavpd 188 (583)
.||-|-|. |.+|.-+++.+++. |-+++.|...+..-. .-.|+.. ..+..|+++ ++|.=++-+||
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~---~~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCc---EEECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 58899997 99999999999998 889888877532110 0135654 567777765 68999999998
Q ss_pred hHHHH-HHHHHHhcCCCCcEEEEecCchhhh
Q 007951 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (583)
Q Consensus 189 ~a~~~-Vl~eI~~~Lk~GaiL~~a~G~~i~~ 218 (583)
....+ +++.+...++ .++++.-|+..+.
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~D 103 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTLD 103 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHHH
Confidence 87765 5555655443 3677888887554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=84.83 E-value=0.47 Score=37.60 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 111 ikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+|+|||||.|-.|.=+++.-+.- |+++++....
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcCC
Confidence 48999999999999999988887 9988776543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=84.75 E-value=0.54 Score=39.22 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 110 gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
| |||.|||.|..|-.+|..|++. +...+|++..+.
T Consensus 2 g-krivIvGgG~~G~e~A~~l~~~----~~~~~Vtlie~~ 36 (186)
T d1fcda1 2 G-RKVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPN 36 (186)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSC
T ss_pred C-CcEEEECccHHHHHHHHHHHHc----CCCCcEEEEECC
Confidence 6 9999999999999999999987 112466665443
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.63 E-value=0.33 Score=44.63 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=28.4
Q ss_pred EEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 113 kIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+|.|||.|.-|.++|..|++. |++|.|..+.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA------GIDNVILERQ 34 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH------TCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 699999999999999999999 9998887765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=84.57 E-value=0.76 Score=42.86 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=53.9
Q ss_pred hhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.+ ..+.+.+. +. + ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~-~l~~~~~~-~~----------~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNRE-ALEKAEAS-VR----------E--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHH-HH----------T--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHH-HH----------h--cCCcEEEEE
Confidence 4789 999999976 4999999999998 999888776533 23332221 11 0 012232222
Q ss_pred ---ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 ---vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 34556677888776655332356667775
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.43 E-value=0.093 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEccchhHHHHHHHHHHh
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDS 133 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrds 133 (583)
|||+|||.|.+|.+.|..|.++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999988
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.42 E-value=0.42 Score=40.40 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.6
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~ 149 (583)
.+|+|||.|.-|.+-|..|.+. |+ +|.|..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 3799999999999999999998 97 68877654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=84.26 E-value=0.42 Score=41.78 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=45.7
Q ss_pred hcCCCEEEEEcc---chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 007951 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (583)
Q Consensus 108 l~gikkIgIIG~---G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL 184 (583)
|+| .||++||= ++++.|++..+..- |.++.+..... ... .+..+.. ..+.+|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~~~-~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---WQD-EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---hhc-cccceeE----EEechhccccCceeee
Confidence 678 99999995 57999999999876 88776654431 111 1223332 4678899999999886
Q ss_pred ecc
Q 007951 185 LIS 187 (583)
Q Consensus 185 avp 187 (583)
..-
T Consensus 66 ~r~ 68 (151)
T d2at2a2 66 LRI 68 (151)
T ss_pred eEE
Confidence 543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=84.20 E-value=1.8 Score=39.96 Aligned_cols=85 Identities=19% Similarity=0.119 Sum_probs=56.6
Q ss_pred hhcCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
.|+| |++-|.| .+-+|.++|+.|.+. |.+|++..++.+ ..+.+++.+.. .+ .+|+
T Consensus 2 ~l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~~~~~-----------~~-~~Dv---- 57 (248)
T d2d1ya1 2 LFAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEAIGGA-----------FF-QVDL---- 57 (248)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHHHTCE-----------EE-ECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCe-----------EE-EEeC----
Confidence 4789 9998998 457999999999998 999888777643 34444443322 11 2444
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
+.++...++++++...+.+=.+|+..+|+.
T Consensus 58 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 87 (248)
T d2d1ya1 58 EDERERVRFVEEAAYALGRVDVLVNNAAIA 87 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEeCcCC
Confidence 455566678887766553333677777763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=1.7 Score=40.39 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=54.0
Q ss_pred hhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 007951 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (583)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVILa 185 (583)
-|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+.+.+.+-. ..-.+|+
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~~~-----------~~~~~Dv---- 60 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDESGGRALEQELPGA-----------VFILCDV---- 60 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTE-----------EEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcCCC-----------eEEEccC----
Confidence 4789 99999996 57999999999998 999888776543322222221100 0112332
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++.+.++++++...+.+=.+|+..+|+
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 61 TQEDDVKTLVSETIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 34556667888776655333357777775
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.01 E-value=0.59 Score=41.15 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=28.7
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+||.|||.|.-|.+-|..|.+. |++|.|....
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 7899999999999999999998 9998887543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.99 E-value=1.2 Score=41.17 Aligned_cols=89 Identities=19% Similarity=0.077 Sum_probs=52.3
Q ss_pred cCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhh-hccCCeEEEec
Q 007951 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (583)
Q Consensus 109 ~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Ea-v~~ADIVILav 186 (583)
+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+..-. .....+ .-.+|+ +
T Consensus 2 ~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~~~~Dv----~ 64 (254)
T d2gdza1 2 NG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEAGVQCKAALHEQ------FEPQKTLFIQCDV----A 64 (254)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTTT------SCGGGEEEEECCT----T
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHh------cCCCcEEEEEeec----C
Confidence 57 888888875 5999999999998 999888777644433333221110 011111 112332 4
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 187 pd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.++.+.++++++...+.+=.+|+-.+|+
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 65 DQQQLRDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCcCeecccccc
Confidence 4556667787776655332356666665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=83.96 E-value=1.5 Score=39.23 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=29.0
Q ss_pred CEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 112 kkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
|||.|+|. |.+|.+++..|.++ |++|++..|..
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~ 37 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRES 37 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCC
Confidence 78999995 99999999999998 99988777653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=83.92 E-value=1.2 Score=41.88 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred hhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHhhhh--ccCC
Q 007951 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETI--SGSD 180 (583)
Q Consensus 107 ~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~~Eav--~~AD 180 (583)
..+| ++|.=||||.=..++ .+.+. |.+| ++.+.++...+.|+ ..|+.. .-...+..+.. ...|
T Consensus 118 ~~~g-~~VLDiGcGsG~l~i--~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~-~~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 118 LRPG-DKVLDLGTGSGVLAI--AAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFD 186 (254)
T ss_dssp CCTT-CEEEEETCTTSHHHH--HHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEE
T ss_pred cCcc-CEEEEcccchhHHHH--HHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCce-eEEeccccccccccccc
Confidence 3467 899999999854444 45555 7775 58888777666555 355532 00124554443 4689
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+|+.-.......++++++...||||-.++++ |+
T Consensus 187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS-gi 219 (254)
T d2nxca1 187 LLVANLYAELHAALAPRYREALVPGGRALLT-GI 219 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE-EE
T ss_pred hhhhccccccHHHHHHHHHHhcCCCcEEEEE-ec
Confidence 9988777777888889999999999876553 44
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=83.81 E-value=0.99 Score=42.38 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=52.9
Q ss_pred hcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE-e
Q 007951 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-L 185 (583)
Q Consensus 108 l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-a 185 (583)
|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+...+.|- ++..+.. .
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~~~~---------------~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSAERLAELETDHGD---------------NVLGIVGDV 60 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGG---------------GEEEEECCT
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCC---------------CeeEEeccc
Confidence 688 99999996 48999999999998 99998877754332222222221 1111111 1
Q ss_pred ccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 186 vpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 61 RSLEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCcccccccccc
Confidence 33445566777766655443456666775
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=83.35 E-value=0.81 Score=38.91 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=58.2
Q ss_pred hhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcC----cee---------------cC
Q 007951 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE---------------EN 166 (583)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G----~~~---------------~d 166 (583)
..-+| .+|-.||||.=- .+..|.+. |++| +|.+.++...+.|++.. ... ..
T Consensus 17 ~~~~~-~rvLd~GCG~G~--~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 17 NVVPG-ARVLVPLCGKSQ--DMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp CCCTT-CEEEETTTCCSH--HHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred CCCCC-CEEEEecCcCCH--HHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 45577 899999999854 44566666 8886 67777777777777631 100 00
Q ss_pred CCcCCH-hhhhccCCeEEE-----eccchHHHHHHHHHHhcCCCCcEEE
Q 007951 167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (583)
Q Consensus 167 ~t~~d~-~Eav~~ADIVIL-----avpd~a~~~Vl~eI~~~Lk~GaiL~ 209 (583)
+...+. .+.....|+|+. .+++.....+++.+...||||-.+.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 001111 122234566654 4556666778889999999987543
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=83.24 E-value=0.53 Score=39.26 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=32.3
Q ss_pred chhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
+.+.++.-++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 23 l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 23 IQAGLRPQSRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp HHHHCCTTCEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred HHHhhhcCCeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 334444338999999999999999999998 9988777654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.18 E-value=0.64 Score=43.14 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=34.9
Q ss_pred hhhcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHH
Q 007951 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA 155 (583)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~ 155 (583)
|.|+| |++-|.|.+ -+|.++|+.|.+. |++|++..+++++..+
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~~ 45 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAAE 45 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHHH
Confidence 57899 999999866 4999999999998 9999887776554433
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=83.03 E-value=0.79 Score=41.85 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred hhcCCCEEEEEccch---hHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 107 ~l~gikkIgIIG~G~---mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..+++
T Consensus 2 ~L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 2 FLSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred cCCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4789 9999999865 889999999998 99988877653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.31 E-value=0.84 Score=42.86 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH---HcCceecCCCcCCHhhh-hccCCeE
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYET-ISGSDLV 182 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~---~~G~~~~d~t~~d~~Ea-v~~ADIV 182 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+. +.|.. ...+ .-.+|+
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~i~~~~~~--------~~~~~~~~~Dv- 65 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNEDRLEETKQQILKAGVP--------AEKINAVVADV- 65 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------GGGEEEEECCT-
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCC--------CcceEEEEeeC-
Confidence 688 999999976 5999999999998 9998887775433222221 11211 0000 112232
Q ss_pred EEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 183 ILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+.++.+.++++++...+.+=.+|+..+|.
T Consensus 66 ---~~~~~v~~~~~~~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 66 ---TEASGQDDIINTTLAKFGKIDILVNNAGA 94 (274)
T ss_dssp ---TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ---CCHHHHHHHHHHHHHHcCCceEEEeeccc
Confidence 45566677888776655333367777775
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=81.85 E-value=0.62 Score=42.20 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=27.8
Q ss_pred EEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecCC
Q 007951 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (583)
Q Consensus 114 IgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~ 150 (583)
|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 89999999999999999998 99988877643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=81.63 E-value=1.4 Score=39.08 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=53.2
Q ss_pred CEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEe-c-CCcccHHHHHHcCceecCCC-cCCHhhhhccCCeEEEecc
Q 007951 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEARAAGFTEENGT-LGDIYETISGSDLVLLLIS 187 (583)
Q Consensus 112 kkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~-r-~~s~s~~~A~~~G~~~~d~t-~~d~~Eav~~ADIVILavp 187 (583)
.|||||| .|..|.-+.+-|.+. + .+++.... + ...+........-....+.. .....+...++|+||+++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-C----CceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5799999 688888887777653 1 33543322 2 22233322221111100000 1223456689999999999
Q ss_pred chHHHHHHHHHHhcCCCCcEEEEecCch
Q 007951 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (583)
Q Consensus 188 d~a~~~Vl~eI~~~Lk~GaiL~~a~G~~ 215 (583)
...-.++.+.+ .+.+.++.+.+++-
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADFR 105 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTTT
T ss_pred cchHHHHHHHH---HhcCcccccchhhh
Confidence 98777666543 24455666666663
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.95 E-value=1.8 Score=44.85 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.4
Q ss_pred hhhhcCCCEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEE
Q 007951 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (583)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg 146 (583)
.+.|+. .+|.|||+|..|.-+++||.-+ |+ .+.+.
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itiv 55 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTII 55 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEE
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEE
Confidence 467888 9999999999999999999987 76 45454
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.81 E-value=1 Score=36.73 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=28.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++|.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 54 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGA 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEec
Confidence 7899999999999999999988 9988877664
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.61 E-value=0.88 Score=40.49 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=27.9
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCc-eEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~-~ViVg~r~ 149 (583)
.+|.|||.|.-|.+.|..|++. |+ +|.|..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 5799999999999999999998 96 77776654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=80.59 E-value=1.4 Score=40.77 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=53.2
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE--
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-- 184 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-- 184 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..+..++..+.+.+.+. ..++..+
T Consensus 4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~ 61 (251)
T d1zk4a1 4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQH 61 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCC---------------CCcEEEEEc
Confidence 789 999898955 5999999999998 99988877754332222222110 1122222
Q ss_pred -eccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 185 -LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 185 -avpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
.+.++...++++++...+.+=.+|+..+|+
T Consensus 62 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCceEEEecccc
Confidence 234555667888776655332356767765
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.50 E-value=2.7 Score=39.02 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=55.3
Q ss_pred hhhcCCCEEEEEcc-chhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----HcCceecCCCcCCHhhhhccCC
Q 007951 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSD 180 (583)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~~G~~~~d~t~~d~~Eav~~AD 180 (583)
+.|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+... +.|... . .-.+|
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~---------~-~~~~D 65 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLEEIKKVGGEA---------I-AVKGD 65 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHHHHHHTTCEE---------E-EEECC
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHHHHhcCCcE---------E-EEEcc
Confidence 35899 98888885 47999999999998 9999888876543222221 112110 0 11233
Q ss_pred eEEEeccchHHHHHHHHHHhcCCCCcEEEEecCc
Q 007951 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (583)
Q Consensus 181 IVILavpd~a~~~Vl~eI~~~Lk~GaiL~~a~G~ 214 (583)
+ +.++...++++++...+.+=.+|+..+|+
T Consensus 66 v----t~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 66 V----TVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp T----TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred C----CCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 2 44556667788776655433467777775
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.50 E-value=1.1 Score=37.14 Aligned_cols=32 Identities=28% Similarity=0.196 Sum_probs=28.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 8999999999999999999998 9988776554
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.49 E-value=0.87 Score=40.55 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.4
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
.||+|||.|.-|.+-|..|++. +.|++|.+..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6999999999999999999876 346788887654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=0.99 Score=36.97 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=28.8
Q ss_pred CEEEEEccchhHHHHHHHHHHhhhhhcCCceEEEEecC
Q 007951 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (583)
Q Consensus 112 kkIgIIG~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~ 149 (583)
++|.|||.|..|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 53 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMF 53 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeec
Confidence 7899999999999999999988 9988877664
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=80.19 E-value=1 Score=42.69 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=44.7
Q ss_pred CCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHH----H--cCc---eecC-CCcCCHhhhhcc
Q 007951 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----A--AGF---TEEN-GTLGDIYETISG 178 (583)
Q Consensus 110 gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~----~--~G~---~~~d-~t~~d~~Eav~~ 178 (583)
| |+|.|.| .|.+|..+++.|.+. |++|+...|+.++...... . ... ...| ....+..+++.+
T Consensus 11 g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 83 (342)
T d1y1pa1 11 G-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp T-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred c-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhccc
Confidence 7 9999999 689999999999998 9998776765332211110 0 011 1000 001234578899
Q ss_pred CCeEEEecc
Q 007951 179 SDLVLLLIS 187 (583)
Q Consensus 179 ADIVILavp 187 (583)
+|.|+.+.-
T Consensus 84 ~~~v~~~a~ 92 (342)
T d1y1pa1 84 AAGVAHIAS 92 (342)
T ss_dssp CSEEEECCC
T ss_pred chhhhhhcc
Confidence 999886544
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.05 E-value=0.87 Score=43.31 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=43.9
Q ss_pred cCCCEEEEEc-cchhHHHHHHHHHHhhhhhcCCceEEEEecCCcccH-HHHHHcCceecCCCcCC---HhhhhccCCeEE
Q 007951 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVL 183 (583)
Q Consensus 109 ~gikkIgIIG-~G~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~-~~A~~~G~~~~d~t~~d---~~Eav~~ADIVI 183 (583)
++ |||.|+| .|-+|..++..|.+. |++|++.++...... .......+...| ..+ ..+++++.|.|+
T Consensus 14 ~n-MKILVTGgsGfIGs~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~~~~~~d~Vi 84 (363)
T d2c5aa1 14 EN-LKISITGAGGFIASHIARRLKHE------GHYVIASDWKKNEHMTEDMFCDEFHLVD--LRVMENCLKVTEGVDHVF 84 (363)
T ss_dssp SC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCSSSCGGGTCSEEEECC--TTSHHHHHHHHTTCSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCCccchhhhcccCcEEEee--chhHHHHHHHhhcCCeEe
Confidence 67 8999999 899999999999998 999877655432221 111111122111 222 334567899888
Q ss_pred Eec
Q 007951 184 LLI 186 (583)
Q Consensus 184 Lav 186 (583)
-+.
T Consensus 85 h~a 87 (363)
T d2c5aa1 85 NLA 87 (363)
T ss_dssp ECC
T ss_pred ecc
Confidence 755
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.03 E-value=1.1 Score=41.46 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=32.1
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcc
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~ 152 (583)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|..++
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~ 41 (242)
T d1cyda_ 3 FSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSD 41 (242)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 789 999999975 5999999999998 9998887776444
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.02 E-value=1 Score=42.03 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=51.4
Q ss_pred hcCCCEEEEEccc-hhHHHHHHHHHHhhhhhcCCceEEEEecCCcccHHHHHHcCceecCCCcCCHhhhhccCCeEEE--
Q 007951 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL-- 184 (583)
Q Consensus 108 l~gikkIgIIG~G-~mG~A~A~nLrdsl~~~g~G~~ViVg~r~~s~s~~~A~~~G~~~~d~t~~d~~Eav~~ADIVIL-- 184 (583)
||| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+. . +. ..++..+
T Consensus 6 Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~l~~~~~~~--~----------~~--~~~~~~~~~ 64 (259)
T d1xq1a_ 6 LKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNEYELNECLSKW--Q----------KK--GFQVTGSVC 64 (259)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------HT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------hc--CCceEEEec
Confidence 678 999999976 4999999999998 999887776533322222211 1 00 1112222
Q ss_pred -eccchHHHHHHHHHHhcCC-CCcEEEEecCc
Q 007951 185 -LISDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (583)
Q Consensus 185 -avpd~a~~~Vl~eI~~~Lk-~GaiL~~a~G~ 214 (583)
.+.++...++++++...+. +=.+|+..+|+
T Consensus 65 Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcccccccccc
Confidence 2334455667777665442 22357777776
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