Citrus Sinensis ID: 008019

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
cccccccccccccEEEEEEEEEEEccccEEEEEEEcccccccccccccccccEEECccccEEEEEcccccEEEEEEEEECccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEEEEEcccccccccccccccHHHHHHcccccccccccccEEEEECccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccEEEcccccccEEEcccHHHHHHccccHHHHHcccccccccccccHHHHHHHHHHHHHcccccccCEEEccccccCEEcEEEEEEEEcccccEEEEEEEEEccECc
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNT***********FVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQP****W*RRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSS******VQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSG************************************KSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPS*************SPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
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MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Homeobox-leucine zipper protein ATHB-8 Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells.probableQ39123
Homeobox-leucine zipper protein HOX32 Probable transcription factor.probableQ6AST1

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2R55, chain A
Confidence level:very confident
Coverage over the Query: 6-115
View the alignment between query and template
View the model in PyMOL
Template: 2PSO, chain A
Confidence level:confident
Coverage over the Query: 153-177,189-230,252-338,375-420
View the alignment between query and template
View the model in PyMOL
Template: 3P0L, chain A
Confidence level:confident
Coverage over the Query: 135-181,194-231,255-339,367-419
View the alignment between query and template
View the model in PyMOL
Template: 3VOL, chain A
Confidence level:probable
Coverage over the Query: 461-577
View the alignment between query and template
View the model in PyMOL