Citrus Sinensis ID: 008019

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
cccccccccccccEEEEEEEEEEEccccEEEEEEEcccccccccccccccccEEEEccccEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccEEEEEEEcccccccccccccccHHHHHHcccccccccccccEEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccEEEcccccccEEEcccHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHcccccccEEEEccccccEEEcEEEEEEEEcccccEEEEEEEEEccEEc
ccEEcccccccHHHEEEEEEEEEcccccEEEEEEEcccccccccccccccHHHHccccccEEEEEcccccEEEEEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccEEEEEEccccHccccccccccccccccccEEEHHHHHHHccccHHHHHHHHHHHHHHHHcccccEHccccccccccccccccccccccEEEEEcccccccccEEEEEEEccccccccccEccHHHHHHHHcccccccccccccEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHccccEEEEEccccccHHHHHcHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHccccEccccEEEccccccccHHHEEEEEEEccccccEEEEEEEEEEEcc
mqlyapttlaparDFWLLRYTSVLEDGSLVVCERslnntqngpsmpqaphfvraemlpsgylirpcegggsiihivdhmdlepwsvpevlrplyessTLIAQKTTMAALRHLRQISqevsqpsvtgwgrrPAALRALSQRLSRGFNEalngftdegwsmlesdgiddvtvhvnsspskmmgvqlsyvngfpsmSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAvkagpcslpvpragnfggqvilplahtiehEEFLEVIKLENmahyredmimpsDIFLLQLcsgvdenavgncaelvfapidasfsddapiipsgfriipldsgkdtpspnrtldlasalevgptgnkasgdsstqcgstkSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALAlspsrfgsnaglrpppgspeahTLARWICQSYRCYLgaellkcegNESILKTLWHHSDAVlccslkalpvftfanqAGLDMLETTLVALQDITLEkifddsgrktlcseFPQIMQQGFmclqsgiclssmgrpisYERAVAWKVLNEEENAHCICFmfinwsfv
mqlyapttlapardfWLLRYTSVLEDGSLVVCERSlnntqngpsmpqAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISqevsqpsvtgwgrRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRiipldsgkdtpSPNRTLDLASALEvgptgnkasgdsstqcgsTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWadssidaysaaaVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
******TTLAPARDFWLLRYTSVLEDGSLVVCERS***************FVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQI***********W******************************************************VQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIP****************************************KSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALAL********************HTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSF*
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNT***********FVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQP******RRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSS****************SMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSG**************************************VITIAFQFAFEMHLQ*NVASMARQYVRGIIASVQRVALALSPS*************SPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIF****RKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVG****************TKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
*QLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNT*NGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDS***********************************STKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPS**********PPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
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MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSPSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query581 2.2.26 [Sep-21-2011]
Q39123833 Homeobox-leucine zipper p yes no 0.991 0.691 0.797 0.0
Q9ZU11836 Homeobox-leucine zipper p no no 0.993 0.690 0.793 0.0
Q6AST1859 Homeobox-leucine zipper p yes no 0.998 0.675 0.661 0.0
A2XK30859 Homeobox-leucine zipper p N/A no 0.998 0.675 0.661 0.0
A2WLR5861 Homeobox-leucine zipper p N/A no 0.984 0.664 0.639 0.0
Q5QMZ9868 Homeobox-leucine zipper p no no 0.994 0.665 0.635 0.0
Q2QM96855 Homeobox-leucine zipper p no no 0.996 0.677 0.632 0.0
A2ZMN9855 Homeobox-leucine zipper p N/A no 0.996 0.677 0.632 0.0
O04291852 Homeobox-leucine zipper p no no 0.986 0.672 0.630 0.0
A2Z8L4840 Homeobox-leucine zipper p N/A no 0.991 0.685 0.613 0.0
>sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1 Back     alignment and function desciption
 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/584 (79%), Positives = 532/584 (91%), Gaps = 8/584 (1%)

Query: 1   MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 60
           MQLYAPTTLAPARDFW+LRYTSV+EDGSLV+CERSLNNTQNGPSMP +PHFVRAE+LPSG
Sbjct: 255 MQLYAPTTLAPARDFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRAEILPSG 314

Query: 61  YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVS 120
           YLIRPCEGGGSI+HIVDH DLEPWSVPEVLR LYESSTL+AQ+TTMAALR+LRQISQE+S
Sbjct: 315 YLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRYLRQISQEIS 374

Query: 121 QPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMM 180
           QP+VTGWGRRPAALRALSQRLS+GFNEA+NGF+DEGWS+LESDGIDDVT+ VNSSP+KMM
Sbjct: 375 QPNVTGWGRRPAALRALSQRLSKGFNEAVNGFSDEGWSILESDGIDDVTLLVNSSPTKMM 434

Query: 181 GV-QLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVK 239
               L + NG+ SM +AVLCAKASMLLQ+VPP+ILLRFLREHR EWAD+SIDAYSAAA+K
Sbjct: 435 MTSSLPFANGYTSMPSAVLCAKASMLLQNVPPSILLRFLREHRQEWADNSIDAYSAAAIK 494

Query: 240 AGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCS 299
           AGPCSLP+PR G+FGGQVILPLAHTIE+EEF+EVIKLE++ HY+EDM+MP+DIFLLQ+CS
Sbjct: 495 AGPCSLPIPRPGSFGGQVILPLAHTIENEEFMEVIKLESLGHYQEDMMMPADIFLLQMCS 554

Query: 300 GVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVG 359
           GVDENAV +CAEL+FAPIDASFSDDAPIIPSGFRIIPLDS  +  SPNRTLDLASAL+V 
Sbjct: 555 GVDENAVESCAELIFAPIDASFSDDAPIIPSGFRIIPLDSKSEGLSPNRTLDLASALDV- 613

Query: 360 PTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALS 419
             G++ +GDS    G++KSV+TIAFQ AFEMH+QENVASMARQYVR +IASVQRVALALS
Sbjct: 614 --GSRTAGDSCGSRGNSKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALS 671

Query: 420 PSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLC 479
           PS     +GLRPPP SPEAHTLARWI  SYRCYLG +LLK  G + +LK+LWHH DAV+C
Sbjct: 672 PSSH-QLSGLRPPPASPEAHTLARWISHSYRCYLGVDLLKPHGTD-LLKSLWHHPDAVMC 729

Query: 480 CSLKAL-PVFTFANQAGLDMLETTLVALQDITLEKIFD-DSGRKTLCSEFPQIMQQGFMC 537
           CSLKAL PVFTFANQAGLDMLETTLVALQDITL+KIFD ++G+KTL SEFPQIMQQGFMC
Sbjct: 730 CSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMC 789

Query: 538 LQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 581
           +  GIC+SSMGR ++YE+AV WKVLN++E+ HCICFMF+NWSF+
Sbjct: 790 MDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833
Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1 Back     alignment and function description
>sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1 Back     alignment and function description
>sp|A2XK30|HOX32_ORYSI Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1 Back     alignment and function description
>sp|A2WLR5|HOX29_ORYSI Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. indica GN=HOX29 PE=2 SV=2 Back     alignment and function description
>sp|Q5QMZ9|HOX29_ORYSJ Homeobox-leucine zipper protein HOX29 OS=Oryza sativa subsp. japonica GN=HOX29 PE=2 SV=2 Back     alignment and function description
>sp|Q2QM96|HOX33_ORYSJ Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1 Back     alignment and function description
>sp|A2ZMN9|HOX33_ORYSI Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2 Back     alignment and function description
>sp|O04291|ATB14_ARATH Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1 Back     alignment and function description
>sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
219879370 829 class III HD-Zip protein 8 [Citrus trifo 1.0 0.700 0.996 0.0
224092274 828 predicted protein [Populus trichocarpa] 0.998 0.700 0.897 0.0
359476025 839 PREDICTED: homeobox-leucine zipper prote 1.0 0.692 0.874 0.0
206572107 844 putative HB8 HD-ZipIII [Malus x domestic 0.998 0.687 0.874 0.0
147790308 839 hypothetical protein VITISV_009744 [Viti 1.0 0.692 0.858 0.0
383930759 840 class III HD-Zip protein 8 [Prunus persi 0.998 0.690 0.874 0.0
224142954 823 predicted protein [Populus trichocarpa] 0.996 0.703 0.877 0.0
357466691 834 Class III HD-Zip protein [Medicago trunc 1.0 0.696 0.864 0.0
302398629 841 BZIP domain class transcription factor [ 0.998 0.689 0.864 0.0
356515619 845 PREDICTED: homeobox-leucine zipper prote 1.0 0.687 0.862 0.0
>gi|219879370|gb|ACL51017.1| class III HD-Zip protein 8 [Citrus trifoliata] Back     alignment and taxonomy information
 Score = 1204 bits (3114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/581 (99%), Positives = 580/581 (99%)

Query: 1   MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 60
           MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG
Sbjct: 249 MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 308

Query: 61  YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVS 120
           YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVS
Sbjct: 309 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVS 368

Query: 121 QPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMM 180
           QPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMM
Sbjct: 369 QPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMM 428

Query: 181 GVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKA 240
           GVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKA
Sbjct: 429 GVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADSSIDAYSAAAVKA 488

Query: 241 GPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSG 300
           GPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSG
Sbjct: 489 GPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSG 548

Query: 301 VDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGP 360
           VDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGP
Sbjct: 549 VDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGP 608

Query: 361 TGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSP 420
           TGNKASGDSSTQCGS KSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSP
Sbjct: 609 TGNKASGDSSTQCGSKKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALSP 668

Query: 421 SRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCC 480
           SRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCC
Sbjct: 669 SRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLCC 728

Query: 481 SLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 540
           SLKALPVFTFANQAGLDMLETTLVALQDITLEKIFD+SGRKTLCSEFPQIMQQGFMCLQS
Sbjct: 729 SLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDESGRKTLCSEFPQIMQQGFMCLQS 788

Query: 541 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 581
           GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV
Sbjct: 789 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 829

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092274|ref|XP_002309538.1| predicted protein [Populus trichocarpa] gi|60327635|gb|AAX19057.1| class III HD-Zip protein 8 [Populus trichocarpa] gi|222855514|gb|EEE93061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476025|ref|XP_002283717.2| PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Vitis vinifera] gi|296081833|emb|CBI20838.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|206572107|gb|ACI13686.1| putative HB8 HD-ZipIII [Malus x domestica] Back     alignment and taxonomy information
>gi|147790308|emb|CAN61201.1| hypothetical protein VITISV_009744 [Vitis vinifera] Back     alignment and taxonomy information
>gi|383930759|gb|AFH56718.1| class III HD-Zip protein 8 [Prunus persica] Back     alignment and taxonomy information
>gi|224142954|ref|XP_002324794.1| predicted protein [Populus trichocarpa] gi|60327633|gb|AAX19056.1| class III HD-Zip protein 7 [Populus trichocarpa] gi|222866228|gb|EEF03359.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466691|ref|XP_003603630.1| Class III HD-Zip protein [Medicago truncatula] gi|355492678|gb|AES73881.1| Class III HD-Zip protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|302398629|gb|ADL36609.1| BZIP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356515619|ref|XP_003526496.1| PREDICTED: homeobox-leucine zipper protein ATHB-8-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
TAIR|locus:2134088833 HB-8 "AT4G32880" [Arabidopsis 0.991 0.691 0.779 6.4e-250
TAIR|locus:2034086837 ATHB-15 "AT1G52150" [Arabidops 0.993 0.689 0.776 2.1e-244
TAIR|locus:2061544852 PHB "AT2G34710" [Arabidopsis t 0.986 0.672 0.620 6e-190
TAIR|locus:2175856842 REV "AT5G60690" [Arabidopsis t 0.987 0.681 0.602 2.1e-187
TAIR|locus:2028140841 PHV "AT1G30490" [Arabidopsis t 0.972 0.671 0.595 3.4e-180
TAIR|locus:2119048762 ATML1 "AT4G21750" [Arabidopsis 0.311 0.237 0.255 1e-10
TAIR|locus:2135368743 PDF2 "AT4G04890" [Arabidopsis 0.313 0.244 0.271 2.6e-10
TAIR|locus:2207235721 HDG2 "AT1G05230" [Arabidopsis 0.351 0.282 0.256 4.3e-06
TAIR|locus:2134088 HB-8 "AT4G32880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2407 (852.4 bits), Expect = 6.4e-250, P = 6.4e-250
 Identities = 455/584 (77%), Positives = 520/584 (89%)

Query:     1 MQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 60
             MQLYAPTTLAPARDFW+LRYTSV+EDGSLV+CERSLNNTQNGPSMP +PHFVRAE+LPSG
Sbjct:   255 MQLYAPTTLAPARDFWMLRYTSVMEDGSLVICERSLNNTQNGPSMPPSPHFVRAEILPSG 314

Query:    61 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVS 120
             YLIRPCEGGGSI+HIVDH DLEPWSVPEVLR LYESSTL+AQ+TTMAALR+LRQISQE+S
Sbjct:   315 YLIRPCEGGGSILHIVDHFDLEPWSVPEVLRSLYESSTLLAQRTTMAALRYLRQISQEIS 374

Query:   121 QPSVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMM 180
             QP+VTGWGRRPAALRALSQRLS+GFNEA+NGF+DEGWS+LESDGIDDVT+ VNSSP+KMM
Sbjct:   375 QPNVTGWGRRPAALRALSQRLSKGFNEAVNGFSDEGWSILESDGIDDVTLLVNSSPTKMM 434

Query:   181 GVQ-LSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWXXXXXXXXXXXXVK 239
                 L + NG+ SM +AVLCAKASMLLQ+VPP+ILLRFLREHR EW            +K
Sbjct:   435 MTSSLPFANGYTSMPSAVLCAKASMLLQNVPPSILLRFLREHRQEWADNSIDAYSAAAIK 494

Query:   240 AGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCS 299
             AGPCSLP+PR G+FGGQVILPLAHTIE+EEF+EVIKLE++ HY+EDM+MP+DIFLLQ+CS
Sbjct:   495 AGPCSLPIPRPGSFGGQVILPLAHTIENEEFMEVIKLESLGHYQEDMMMPADIFLLQMCS 554

Query:   300 GVDENAVGNCAELVFAPIDASFSDDAPIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVG 359
             GVDENAV +CAEL+FAPIDASFSDDAPIIPSGFRIIPLDS  +  SPNRTLDLASAL+VG
Sbjct:   555 GVDENAVESCAELIFAPIDASFSDDAPIIPSGFRIIPLDSKSEGLSPNRTLDLASALDVG 614

Query:   360 PTGNKASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALS 419
                ++ +GDS    G++KSV+TIAFQ AFEMH+QENVASMARQYVR +IASVQRVALALS
Sbjct:   615 ---SRTAGDSCGSRGNSKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALS 671

Query:   420 PSRFGSNAGLRPPPGSPEAHTLARWICQSYRCYLGAELLKCEGNESILKTLWHHSDAVLC 479
             PS     +GLRPPP SPEAHTLARWI  SYRCYLG +LLK  G + +LK+LWHH DAV+C
Sbjct:   672 PSSH-QLSGLRPPPASPEAHTLARWISHSYRCYLGVDLLKPHGTD-LLKSLWHHPDAVMC 729

Query:   480 CSLKAL-PVFTFANQAGLDMLETTLVALQDITLEKIFDDS-GRKTLCSEFPQIMQQGFMC 537
             CSLKAL PVFTFANQAGLDMLETTLVALQDITL+KIFD++ G+KTL SEFPQIMQQGFMC
Sbjct:   730 CSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMC 789

Query:   538 LQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 581
             +  GIC+SSMGR ++YE+AV WKVLN++E+ HCICFMF+NWSF+
Sbjct:   790 MDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0010089 "xylem development" evidence=RCA;IMP
GO:0045597 "positive regulation of cell differentiation" evidence=IMP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0010014 "meristem initiation" evidence=RCA;IMP
GO:0010072 "primary shoot apical meristem specification" evidence=RCA;IMP
GO:0010067 "procambium histogenesis" evidence=IEP
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009888 "tissue development" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0042546 "cell wall biogenesis" evidence=RCA
GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048589 "developmental growth" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2034086 ATHB-15 "AT1G52150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061544 PHB "AT2G34710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175856 REV "AT5G60690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028140 PHV "AT1G30490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119048 ATML1 "AT4G21750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135368 PDF2 "AT4G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207235 HDG2 "AT1G05230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39123ATHB8_ARATHNo assigned EC number0.79790.99130.6914yesno
Q6AST1HOX32_ORYSJNo assigned EC number0.66150.99820.6752yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HB8
SubName- Full=Class III HD-Zip protein 8; (828 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
pfam08670148 pfam08670, MEKHLA, MEKHLA domain 7e-85
cd08875229 cd08875, START_ArGLABRA2_like, C-terminal lipid-bi 2e-43
pfam01852205 pfam01852, START, START domain 1e-31
smart00234205 smart00234, START, in StAR and phosphatidylcholine 3e-22
cd00177193 cd00177, START, Lipid-binding START domain of mamm 7e-14
cd08869197 cd08869, START_RhoGAP, C-terminal lipid-binding ST 1e-04
cd08868208 cd08868, START_STARD1_3_like, Cholesterol-binding 0.004
>gnl|CDD|219964 pfam08670, MEKHLA, MEKHLA domain Back     alignment and domain information 
 Score =  260 bits (667), Expect = 7e-85
 Identities = 87/148 (58%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 436 PEAHTLARWICQSYRCYLGAELLKCE--GNESILKTLWHHSDAVLCCSLKALPVFTFANQ 493
           PEA TLARW+CQSYR + G +LL       +S+LK LWHH DAVLC SLKA PVF +ANQ
Sbjct: 1   PEALTLARWLCQSYRRHTGRDLLPSADSSGDSLLKALWHHPDAVLCHSLKADPVFNYANQ 60

Query: 494 AGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 553
           A LD+LETT V LQD+   K  ++SGRK  CSE  ++MQQGF CL SG+ +SSMGR  S 
Sbjct: 61  AALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLYSGVRISSMGRRFSI 120

Query: 554 ERAVAWKVLNEEENAHCICFMFINWSFV 581
           E+AVAWK+L+E+   H    MF+NWSF+
Sbjct: 121 EQAVAWKLLDEDGAYHGQAAMFVNWSFL 148

The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins. Length = 148
>gnl|CDD|176884 cd08875, START_ArGLABRA2_like, C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|176878 cd08869, START_RhoGAP, C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>gnl|CDD|176877 cd08868, START_STARD1_3_like, Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 581
PF08670148 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK 100.0
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 99.34
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.32
cd00177193 START Lipid-binding START domain of mammalian STAR 98.81
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 98.48
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 98.45
cd08904204 START_STARD6-like Lipid-binding START domain of ma 98.45
cd08871222 START_STARD10-like Lipid-binding START domain of m 98.44
cd08909205 START_STARD13-like C-terminal lipid-binding START 98.41
PF13426104 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ 98.07
PLN00188719 enhanced disease resistance protein (EDR2); Provis 98.05
cd08905209 START_STARD1-like Cholesterol-binding START domain 98.04
cd08903208 START_STARD5-like Lipid-binding START domain of ma 98.04
cd08906209 START_STARD3-like Cholesterol-binding START domain 97.97
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 97.92
cd08907205 START_STARD8-like C-terminal lipid-binding START d 97.88
cd08902202 START_STARD4-like Lipid-binding START domain of ma 97.74
cd08874205 START_STARD9-like C-terminal START domain of mamma 97.66
cd08908204 START_STARD12-like C-terminal lipid-binding START 97.63
PF00989113 PAS: PAS fold; InterPro: IPR013767 PAS domains are 97.26
cd08910207 START_STARD2-like Lipid-binding START domain of ma 97.19
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 96.95
cd08873235 START_STARD14_15-like Lipid-binding START domain o 96.87
PF08448110 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold 96.73
cd08871222 START_STARD10-like Lipid-binding START domain of m 96.67
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 96.58
PRK13557 540 histidine kinase; Provisional 96.57
cd08872235 START_STARD11-like Ceramide-binding START domain o 96.24
cd08913240 START_STARD14-like Lipid-binding START domain of m 96.19
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 96.17
cd08914236 START_STARD15-like Lipid-binding START domain of m 96.11
cd08870209 START_STARD2_7-like Lipid-binding START domain of 96.04
cd08904204 START_STARD6-like Lipid-binding START domain of ma 95.87
PRK13559 361 hypothetical protein; Provisional 95.54
cd08911207 START_STARD7-like Lipid-binding START domain of ma 95.44
cd08907205 START_STARD8-like C-terminal lipid-binding START d 94.82
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 94.72
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 94.58
TIGR00229124 sensory_box PAS domain S-box. The PAS domain was p 94.52
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 94.3
cd00177193 START Lipid-binding START domain of mammalian STAR 94.09
PRK11091 779 aerobic respiration control sensor protein ArcB; P 94.06
cd00130103 PAS PAS domain; PAS motifs appear in archaea, euba 93.68
TIGR02938 494 nifL_nitrog nitrogen fixation negative regulator N 93.59
cd08874205 START_STARD9-like C-terminal START domain of mamma 93.39
cd08909205 START_STARD13-like C-terminal lipid-binding START 92.88
cd08906209 START_STARD3-like Cholesterol-binding START domain 92.53
cd08908204 START_STARD12-like C-terminal lipid-binding START 92.05
PRK13558 665 bacterio-opsin activator; Provisional 91.99
cd08910207 START_STARD2-like Lipid-binding START domain of ma 91.88
PRK13560 807 hypothetical protein; Provisional 91.88
cd08870209 START_STARD2_7-like Lipid-binding START domain of 91.62
TIGR02040442 PpsR-CrtJ transcriptional regulator PpsR. This mod 91.56
TIGR02040 442 PpsR-CrtJ transcriptional regulator PpsR. This mod 91.31
PF1318864 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. 91.04
cd08903208 START_STARD5-like Lipid-binding START domain of ma 90.55
PF01852206 START: START domain; InterPro: IPR002913 START (St 90.34
smart00234206 START in StAR and phosphatidylcholine transfer pro 89.69
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 89.58
PRK09776 1092 putative diguanylate cyclase; Provisional 87.33
PRK11359 799 cyclic-di-GMP phosphodiesterase; Provisional 87.28
cd08913240 START_STARD14-like Lipid-binding START domain of m 86.84
PRK11073 348 glnL nitrogen regulation protein NR(II); Provision 86.49
PRK10060 663 RNase II stability modulator; Provisional 85.79
PF0844791 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold 83.87
cd08873235 START_STARD14_15-like Lipid-binding START domain o 82.33
cd08905209 START_STARD1-like Cholesterol-binding START domain 80.49
PRK11360 607 sensory histidine kinase AtoS; Provisional 80.49
cd08911207 START_STARD7-like Lipid-binding START domain of ma 80.22
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins Back     alignment and domain information 
Probab=100.00  E-value=1.7e-61  Score=452.52  Aligned_cols=146  Identities=41%  Similarity=0.625  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCC--CChhHHHHHHhcCCCeeeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccc
Q 008019          436 PEAHTLARWICQSYRCYLGAELLKC--EGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEK  513 (581)
Q Consensus       436 pe~~~l~~~i~~SY~~~~G~~L~~~--~~~~~~~~~L~~ap~avl~h~~~~dPvF~YaN~aAL~l~e~~w~el~~lpsr~  513 (581)
                      ||++.|+++|++||+++||++|++.  .+.++.+++||+||||||||++|+||+|||||++||+||||+|+||++|||||
T Consensus         1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~   80 (148)
T PF08670_consen    1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRL   80 (148)
T ss_pred             ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhh
Confidence            7999999999999999999999993  45679999999999999999999999999999999999999999999999999


Q ss_pred             ccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeeccceeC
Q 008019          514 IFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV  581 (581)
Q Consensus       514 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D~~g~~~GqAa~F~~W~~l  581 (581)
                      ||||++|+||+++|++|++|||+++|+||||||+||||+||+|+||||+|++|+++||||||.||+||
T Consensus        81 sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l  148 (148)
T PF08670_consen   81 SAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL  148 (148)
T ss_pred             ccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999997

>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>TIGR00229 sensory_box PAS domain S-box Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR Back     alignment and domain information
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR Back     alignment and domain information
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>PRK09776 putative diguanylate cyclase; Provisional Back     alignment and domain information
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10060 RNase II stability modulator; Provisional Back     alignment and domain information
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 2e-14
2pso_A237 STAR-related lipid transfer protein 13; alpha and 7e-13
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 2e-10
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 3e-10
3qsz_A189 STAR-related lipid transfer protein; structural ge 3e-09
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 1e-08
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 2e-07
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
 Score = 72.0 bits (176), Expect = 2e-14
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 4   YAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLI 63
            A   L   RDF  L      EDG++      + +    P  P  P FVR    P G   
Sbjct: 123 SAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGFVRGFNHPCGCFC 178

Query: 64  RPCEGGGSIIHI--VDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALRHLRQISQEVSQ 121
            P  G  +  ++    H DL  + +P+ +   +   ++           +L++  ++  +
Sbjct: 179 EPLPGEPTKTNLVTFFHTDLSGY-LPQNVVDSFFPRSMT------RFYANLQKAVKQFHE 231
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 99.5
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 99.09
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.04
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 98.95
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 98.64
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 98.63
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 98.55
3qsz_A189 STAR-related lipid transfer protein; structural ge 97.88
4eet_B115 Phototropin-2; LOV, blue light photoreceptor, sign 97.78
3t50_A128 Blue-light-activated histidine kinase; PAS superfa 97.77
3lyx_A124 Sensory BOX/ggdef domain protein; structural genom 97.76
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 97.73
3ue6_A166 Aureochrome1; PAS/LOV domain, FMN-binding blue-lig 97.7
1n9l_A109 PHOT-LOV1, putative blue light receptor; phototrop 97.59
4hia_A176 LOV protein; PAS, HTH, signaling protein; HET: FMN 97.56
2gj3_A120 Nitrogen fixation regulatory protein; PAS domain, 97.56
3luq_A114 Sensor protein; PAS, histidine, kinase, PSI, MCSG, 97.51
2z6d_A130 Phototropin-2; PAS-fold, LOV-fold, alternative spl 97.48
3p7n_A258 Sensor histidine kinase; LOV domain, light-activat 97.47
3sw1_A162 Sensory box protein; light-oxygen-voltage, LOV, PA 97.44
1byw_A110 Protein (human ERG potassium channel); PAS domain, 97.41
3d72_A149 Vivid PAS protein VVD; circadian, photoreceptor, b 97.3
3f1p_A117 Endothelial PAS domain-containing protein 1; PAS d 97.29
3mqq_A120 Transcriptional regulator, LUXR family; PAS domain 97.27
1d06_A130 Nitrogen fixation regulatory protein FIXL; oxygen 97.13
2r78_A117 Sensor protein; sensory box sensor histidine kinas 97.13
2pr5_A132 Blue-light photoreceptor; light-oxygen-voltage, LO 97.12
3k3c_A158 Protein RV1364C/MT1410; sensor, PAS, signal transd 96.95
2l0w_A138 Potassium voltage-gated channel, subfamily H (EAG 96.93
3kx0_X185 Uncharacterized protein RV1364C/MT1410; PAS domain 96.92
2v0u_A146 NPH1-1, LOV2; kinase, transferase, ATP-binding, se 96.9
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 96.84
3f1p_B121 ARYL hydrocarbon receptor nuclear translocator; PA 96.83
2wkq_A 332 NPH1-1, RAS-related C3 botulinum toxin substrate 1 96.78
3olo_A118 Two-component sensor histidine kinase; structural 96.75
3b33_A115 Sensor protein; structural genomics, PAS domain, n 96.62
3ewk_A227 Sensor protein; PAS domain, alpha/beta fold, kinas 96.6
2vv6_A119 FIXL, sensor protein FIXL; signaling protein, tran 96.54
3eeh_A125 Putative light and redox sensing histidine kinase; 96.5
3ewk_A 227 Sensor protein; PAS domain, alpha/beta fold, kinas 96.46
3mjq_A126 Uncharacterized protein; NESG, structural genomics 96.45
3mxq_A152 Sensor protein; PSI2, MCSG, structural genomics, p 96.44
3fc7_A125 HTR-like protein, sensor protein; APC87712.1, HTR- 96.38
3nja_A125 Probable ggdef family protein; structural genomics 96.29
2kdk_A121 ARYL hydrocarbon receptor nuclear translocator-LI 96.24
3mfx_A129 Sensory BOX/ggdef family protein; alpha-beta prote 96.12
2pso_A237 STAR-related lipid transfer protein 13; alpha and 96.07
3icy_A118 Sensor protein; sensory box histidine kinase/respo 96.05
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 95.81
3bwl_A126 Sensor protein; structural genomics, APC87707.1, P 95.71
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 95.63
1v9y_A167 Heme PAS sensor protein; signaling protein; HET: H 95.57
1ll8_A114 PAS kinase; PAS domain, ligand binding, ligand scr 95.46
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 95.42
3qsz_A189 STAR-related lipid transfer protein; structural ge 95.33
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 94.96
4hi4_A121 Aerotaxis transducer AER2; PAS domain, diatomic GA 94.88
3a0s_A96 Sensor protein; PAS-fold, kinase, phosphoprotein, 94.72
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 94.4
3fg8_A118 Uncharacterized protein RHA05790; PAS domain, stru 93.69
3h9w_A115 Diguanylate cyclase with PAS/PAC sensor; alpha-bet 93.66
3vol_A233 Aerotaxis transducer AER2; heme, oxygen sensor pro 92.33
2w0n_A118 Sensor protein DCUS; signal transduction, two-comp 90.52
2vlg_A111 Sporulation kinase A; histidine kinase, two-compon 89.8
4f3l_A361 Mclock, circadian locomoter output cycles protein 89.68
2jhe_A190 Transcription regulator TYRR; aromatic hydrocarbon 89.43
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 87.3
3a0r_A 349 Sensor protein; four helix bundle, PAS fold, kinas 82.95
3mr0_A142 Sensory box histidine kinase/response regulator; P 81.39
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.50  E-value=1.1e-13  Score=134.88  Aligned_cols=102  Identities=25%  Similarity=0.343  Sum_probs=90.3

Q ss_pred             cccCccCceeEEEEeeeeecCCeEEEEEeecCCCCCCCCCCCCCCcceeeecCCceeEeecC--CCceEEEEEEeeeccC
Q 008019            6 PTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEP   83 (581)
Q Consensus         6 ~SpLvp~Ref~fLRYc~~le~G~wvV~DvSld~~~~~~~~~~~~~~~r~~~lPSGcLIq~~~--nG~SkVtwVeH~e~d~   83 (581)
                      +++++++|||.++||+++.++|.|+|+.+|++.    |..|+...++|+++++|||+|||++  +|.|+|||+.|+|...
T Consensus       125 ~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G  200 (231)
T 2r55_A          125 AMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSG  200 (231)
T ss_dssp             TTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCS
T ss_pred             cCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCC
Confidence            346899999999999999999999999999984    4455567899999999999999998  7899999999999987


Q ss_pred             CCcccccccccchhHHHHHHHHHHHHH-hhhcc
Q 008019           84 WSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI  115 (581)
Q Consensus        84 ~~v~~l~RpL~~Sg~afga~rw~aaLR-~~erl  115 (581)
                      + +|   +.++++.+..+...|++.|| +|+..
T Consensus       201 ~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~  229 (231)
T 2r55_A          201 Y-LP---QNVVDSFFPRSMTRFYANLQKAVKQF  229 (231)
T ss_dssp             S-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             C-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence            6 66   68888999999999999995 88764
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* Back     alignment and structure
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} Back     alignment and structure
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* Back     alignment and structure
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* Back     alignment and structure
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* Back     alignment and structure
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} Back     alignment and structure
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Back     alignment and structure
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* Back     alignment and structure
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} Back     alignment and structure
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} Back     alignment and structure
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 Back     alignment and structure
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* Back     alignment and structure
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A Back     alignment and structure
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Back     alignment and structure
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* Back     alignment and structure
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} Back     alignment and structure
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* Back     alignment and structure
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A Back     alignment and structure
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A Back     alignment and structure
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B Back     alignment and structure
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Back     alignment and structure
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} Back     alignment and structure
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Back     alignment and structure
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* Back     alignment and structure
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} Back     alignment and structure
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Back     alignment and structure
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} Back     alignment and structure
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} Back     alignment and structure
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} Back     alignment and structure
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* Back     alignment and structure
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} Back     alignment and structure
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} Back     alignment and structure
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 581
d2psoa1197 d.129.3.2 (A:908-1104) Star-related lipid transfer 8e-08
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 5e-05
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 0.001
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 11  PARDFWLLRYTSVL-EDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGG 69
           P+RDF +LR        G   +   S+ + +           VRA ++ S YLI PC  G
Sbjct: 101 PSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-----LGGVRAVVMDSQYLIEPCGSG 155

Query: 70  GSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 110
            S +  +  +DL+    PE     +    L A +  +A +R
Sbjct: 156 KSRLTHICRIDLKGH-SPEWYSKGF--GHLCAAE--VARIR 191
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
d1jnua_104 Photoreceptor phy3 flavin-binding domain, lov2 {Ma 98.2
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 98.13
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 97.96
d1n9la_109 Putative blue light receptor, phot-lov1 domain {Gr 97.93
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 97.84
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 97.8
d1mzua_110 PYP domain of sensor histidine kinase Ppr {Rhodosp 97.58
d1ew0a_130 Histidine kinase FixL heme domain {Rhizobium melil 97.56
d1bywa_110 Erg potassium channel, N-terminal domain {Human (H 97.5
d1v9ya_113 Direct oxygen sensor protein, DOS {Escherichia col 97.38
d1p97a_114 Hypoxia-inducible factor Hif2a, C-terminal domain 97.05
d1xj3a1106 Histidine kinase FixL heme domain {Bradyrhizobium 96.84
d1nwza_125 Photoactive yellow protein, PYP {Ectothiorhodospir 96.82
d1ll8a_114 N-terminal PAS domain of Pas kinase {Human (Homo s 96.47
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 95.94
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 95.16
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 94.66
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 84.76
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: PYP-like sensor domain (PAS domain)
family: Flavin-binding PAS domain
domain: Photoreceptor phy3 flavin-binding domain, lov2
species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.20  E-value=4.3e-06  Score=68.24  Aligned_cols=92  Identities=9%  Similarity=-0.049  Sum_probs=78.2

Q ss_pred             CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 008019          484 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN  563 (581)
Q Consensus       484 ~dPvF~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiSs~Grrf~ie~a~vW~v~D  563 (581)
                      +|-.++|+|+|+.++++++.+|+.+.+.+.-..+..++...+.+.++.++|-.....-....+.|+.|+++ ..+.-+.|
T Consensus        11 pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~-~~~~pi~d   89 (104)
T d1jnua_          11 PDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL-FHLQVMRD   89 (104)
T ss_dssp             TTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE-EEEEEECT
T ss_pred             CCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEE-EEEEEEEC
Confidence            67899999999999999999999999998777777788888888888888866655566779999999885 48899999


Q ss_pred             CCCceEEEEEeec
Q 008019          564 EEENAHCICFMFI  576 (581)
Q Consensus       564 ~~g~~~GqAa~F~  576 (581)
                      ++|+..|--+++.
T Consensus        90 ~~G~v~~~i~i~~  102 (104)
T d1jnua_          90 ENGDVQYFIGVQQ  102 (104)
T ss_dssp             TTSSCCEEEEEEE
T ss_pred             CCCCEEEEEEEEE
Confidence            9999988766654
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} Back     information, alignment and structure
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} Back     information, alignment and structure
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure