Citrus Sinensis ID: 008106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | 2.2.26 [Sep-21-2011] | |||||||
| Q8H157 | 585 | Nitrate transporter 1.2 O | yes | no | 0.982 | 0.969 | 0.678 | 0.0 | |
| Q9FM20 | 589 | Probable peptide/nitrate | no | no | 0.951 | 0.932 | 0.658 | 0.0 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.965 | 0.982 | 0.670 | 0.0 | |
| Q9LSF0 | 515 | Probable peptide/nitrate | no | no | 0.871 | 0.976 | 0.397 | 1e-113 | |
| Q93VV5 | 591 | Probable peptide/nitrate | no | no | 0.958 | 0.935 | 0.397 | 1e-112 | |
| Q9LSE8 | 521 | Putative peptide/nitrate | no | no | 0.882 | 0.976 | 0.408 | 1e-111 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.944 | 0.931 | 0.370 | 1e-106 | |
| Q56XQ6 | 601 | Probable peptide/nitrate | no | no | 0.932 | 0.895 | 0.380 | 1e-101 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.946 | 0.957 | 0.367 | 1e-100 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.954 | 0.966 | 0.351 | 1e-97 |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/581 (67%), Positives = 476/581 (81%), Gaps = 14/581 (2%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
+++ WEGY DWRN+ A++GRHGGMLAA FVL VE+LENLAYLANASNLVLYL ++MH SP
Sbjct: 6 EVSRWEGYADWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSP 65
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFMGTAFLLAL GGFL+DAFF+T++I++ISA+IEF+GL++LT+QA T SL P
Sbjct: 66 SKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMP 125
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P+C +C E G KA MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T GRKQR
Sbjct: 126 PSC----DSPTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQR 181
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST I +SI IFL GS FYRNKI
Sbjct: 182 STFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKI 241
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKEKVPSQ 303
P GSPLTTI KVL AA C S +SSNAV + SP+ C ++ + E S + + P Q
Sbjct: 242 PCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQ 301
Query: 304 KP--------TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCL 355
+ T +K LN A P + +++CTV++VE+VKIV+K+ PIF TIMLNCCL
Sbjct: 302 EEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCL 361
Query: 356 AQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 415
AQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK TKTE G
Sbjct: 362 AQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETG 421
Query: 416 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS 475
+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E LP+TFLW+ALQYLFLGS
Sbjct: 422 VTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGS 481
Query: 476 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWL 535
ADLFTLAG++E+FFT+AP SMRSLATSLSWASLAMGYY S+V+VSIVN+IT + +TPWL
Sbjct: 482 ADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGSSGNTPWL 541
Query: 536 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
G ++N Y L+ FYWLMC+L NFLH+LFWA RYKY STG
Sbjct: 542 RGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582
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Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/580 (65%), Positives = 450/580 (77%), Gaps = 31/580 (5%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
MD +L+ W GYVDWR++PALRGRHGGMLAA FVL VEVLENLA+LANASNLVLYLS
Sbjct: 32 MDEANRLSAWNGYVDWRSRPALRGRHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTK 91
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
M FSPS +AN VT FMGTAF LAL GGFLADAFFTT+ IY++SAAIEF+GL++LTVQAH
Sbjct: 92 MGFSPSGAANAVTAFMGTAFFLALLGGFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHE 151
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
S +P V LF GLY+VALGVGGIKGSL PHGAEQ+DE T
Sbjct: 152 HSTEP-----------------WSRVFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSS 194
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
GR+QRS FFNY++F LSCGALIAVT VVW+EDNKGW +GFG+STA IL+S+P+FL GS
Sbjct: 195 GRRQRSFFFNYFIFSLSCGALIAVTVVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRV 254
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YR K+P+GSP+TT+FKVLTAA++ K + +S V H+ C ++S + N + +
Sbjct: 255 YRLKVPSGSPITTLFKVLTAALYAKYKKRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGF 313
Query: 301 PSQKPTEDIKFLNRALRNNPAYPI-VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLS 359
FL +R + P ++CT ++V++VKIV+KI PIFMSTIMLNCCLAQLS
Sbjct: 314 LG-------SFLGEVVRERESLPRPLRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLS 366
Query: 360 TFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 419
TFSVQQA+TMNTKLGS VPPA+LPVFPV+F++ILAP YNH+++P ARK TKTE GITHL
Sbjct: 367 TFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTYNHLLLPLARKSTKTETGITHL 426
Query: 420 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-----PLPITFLWVALQYLFLG 474
QRIGTGL+LSIVAMAVAALVE KRK V V+ N+S PLPITFLWVA+QY+FLG
Sbjct: 427 QRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLG 486
Query: 475 SADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 534
SADLFTLAGMMEFFFT+AP +MRSLATSLSWASLAMGYYFS+VLVS VN +T H PW
Sbjct: 487 SADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPW 546
Query: 535 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 574
L G NLN YHLERFYWLMC+L G+NFLH+LFWA+RY Y S
Sbjct: 547 LLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRYVYRS 586
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/571 (67%), Positives = 451/571 (78%), Gaps = 14/571 (2%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
++ WEGY DWRNK ALRGRHGGMLAA FVLAVE+LENLA+LANASNLVLYL FMH S
Sbjct: 8 DVSKWEGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSL 67
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
+ S++ VT FM TAFLLAL GGFLADAFF+T+ I++ISA+IEF+GL+LLT+QA SL P
Sbjct: 68 ARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMP 127
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P C + C G KA LF GLY+V+LG+GGIKGSL HGAEQ+DE T GRKQR
Sbjct: 128 PPCKSSAAL-RCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQR 186
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I LSI +FLLGS FY+NKI
Sbjct: 187 STFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKI 246
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKP 305
P GSPLTTIFKVL AA +C SK SSN T E S +EK PSQ
Sbjct: 247 PRGSPLTTIFKVLLAASIVSCSSKTSSNHFTS------------REVQSEHEEKTPSQSL 294
Query: 306 TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ 365
T + LN+A+ + ++CTV++VE+VKIV+K+ PIF TIMLNCCLAQLST+SV Q
Sbjct: 295 TNSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQ 354
Query: 366 AATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG 425
AATMN K+ + VP ASLPVFPV+F+LILAP Y+H+IIPFARKVTK+E+GITHLQRIG G
Sbjct: 355 AATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVG 414
Query: 426 LILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMM 485
L+LSIVAMAVAALVE+KRK+VA +GL++S E LPITFLW+ALQYLFLGSADLFTLAG++
Sbjct: 415 LVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLL 474
Query: 486 EFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL 545
EFFFT+AP SMRSLATSLSWASLA+GYY S+V+V IVN +T + +PWL G LN L
Sbjct: 475 EFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKLNRNRL 533
Query: 546 ERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
+ FYWLMC+L +NFLH+LFWA RYKY STG
Sbjct: 534 DLFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/576 (39%), Positives = 338/576 (58%), Gaps = 73/576 (12%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q+ E + DWR K A+ G+HGG+ AA VE +EN+ +LA ++N ++Y +K M++S
Sbjct: 2 QIEMEEKFEDWRGKEAISGKHGGIKAAFIACVVETMENMVFLACSTNFMMYFTKSMNYST 61
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
+A +VTNF+GT+FLL +FGGF+AD+F T + +V+ +IE +GL++LT+QAH L+P
Sbjct: 62 PKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLFGSIELLGLIMLTLQAHITKLQP 121
Query: 126 PTCVLEDGIASCREDEGGK------AVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 179
+GGK + +LF GLY +A+GVGG+KGSL HG +Q
Sbjct: 122 ---------------QGGKKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGDQIGT--- 163
Query: 180 LGRKQR--SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237
R QR S FFN+Y F + G +AVT +VWIE+N GW F ISTA + +I +F+ G
Sbjct: 164 --RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFVAG 221
Query: 238 SPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 297
P YR K P GSPLT I V +A N + + VT+ H+S S
Sbjct: 222 CPMYRFKRPAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHH--------- 272
Query: 298 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQ 357
KFLN+A NN + + +VEE + + + PIF STI++NCC+AQ
Sbjct: 273 ---------NKFKFLNKAKLNN------KISATQVEETRTFLALLPIFGSTIIMNCCVAQ 317
Query: 358 LSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV-TKTEMG 415
+ TFSVQQ N KL S ++P ASL P++ +L +Y F +++ + +E
Sbjct: 318 MGTFSVQQGMVTNRKLSRSFEIPVASLNAIPLLCMLSSLALYE----LFGKRILSNSERS 373
Query: 416 IT-HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLG 474
+ +L+RIG GL L+ ++MAVAA+VE+KRK AV++ + I+ W+ LQ++ L
Sbjct: 374 SSFNLKRIGYGLALTSISMAVAAIVEVKRKHEAVHNN-------IKISVFWLELQFVMLS 426
Query: 475 SADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 534
+D+ T+ GM+EFFF ++P SMRS++T+L W S AMG++ S+VLV +VN IT R
Sbjct: 427 LSDMLTVGGMLEFFFRESPASMRSMSTALGWCSTAMGFFLSSVLVEVVNGITGWLR---- 482
Query: 535 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570
+LN LE FY ++C+L LN +++FWA RY
Sbjct: 483 ---DDLNESRLELFYLVLCVLNTLNLFNYIFWAKRY 515
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/586 (39%), Positives = 339/586 (57%), Gaps = 33/586 (5%)
Query: 2 DGICQLNTWE----GYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYL 57
+ + N WE VDWR +P+ +HGGM AA FVL ++ E + A +NL+ Y+
Sbjct: 14 EEVSNENNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYV 73
Query: 58 SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQ 117
MHF S +ANIVTNF+GT F+ AL GG+L+DAF ++ +I +E G +LL+VQ
Sbjct: 74 INEMHFPLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQ 133
Query: 118 AHTRSLKPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE 176
AH LKPP C L D +C E +G KA++ F LY+VALG G +K ++ HGA+Q+ +
Sbjct: 134 AHLPQLKPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQ 191
Query: 177 TTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236
+ K+ S++FN F S G LIA+T +VW++ + G GFG+S A + + I +
Sbjct: 192 SHPKQSKRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVS 251
Query: 237 GSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNV 296
G+ ++RNK P S T I V+ AAI K K +S S P + N V
Sbjct: 252 GTMYFRNKRPRRSIFTPIAHVIVAAIL---KRKLAS------PSDPRMLHGDHHVANDVV 302
Query: 297 KEKVPSQKPTEDIKFLNRAL-----RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIML 351
P +FL++A N P CTV +VE+VK ++ + PIF STI+
Sbjct: 303 PSSTLPHTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVF 360
Query: 352 NCCLAQLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVT 410
N LAQL TFSVQQ ++MNT+L S +PPASL P I ++ L P+Y+ ++PFARK+T
Sbjct: 361 NTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLT 420
Query: 411 KTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQY 470
GI L RIG GL LS +M AA++E KR+ +V G + ++ W+ Q+
Sbjct: 421 GHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LSIFWITPQF 473
Query: 471 LFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYR 530
L G +++FT G++EFF+ + M S +L++ S + G+YFS+VLVS+VN ITST
Sbjct: 474 LIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSV 533
Query: 531 HTP-WLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 575
+ WL ++LN L+ FYWL+ +L LNFL +LFW +R+ S+
Sbjct: 534 DSKGWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFW-SRWNIKSS 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 231/566 (40%), Positives = 333/566 (58%), Gaps = 57/566 (10%)
Query: 11 EGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN 70
E + DW+ K A+ G+HGG+ AA V V ++EN+ ++AN N V Y MH++P+++AN
Sbjct: 7 EKFEDWKGKEAIPGKHGGIRAASIVCVVVMMENIVFIANGFNFVKYFMGSMHYTPATAAN 66
Query: 71 IVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130
+VTNFMGT+FLL LFGGF+AD+F T + +++ IE MGL+LLT QAH L P
Sbjct: 67 MVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVFCCIELMGLILLTFQAHNPKLLPE---- 122
Query: 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR--SAF 188
+D S + + +LF GLY +A+G GG+K SL HG +Q D R R S F
Sbjct: 123 KDKTPSTLQ-----SAILFTGLYAMAIGTGGLKASLPSHGGDQIDR-----RNPRLISRF 172
Query: 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG 248
F++ F + G L+AVT V+WIE+ KGW W F IS + ++ IF +G PFYR K P G
Sbjct: 173 FDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNG 232
Query: 249 SPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED 308
SPL I V+ +A +++N S+ E+ S + NS+ K
Sbjct: 233 SPLKKIAIVIISA----ARNRNKSDLDEEMMRGLI----SIYKNNSHNK----------- 273
Query: 309 IKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT 368
+K++++A N + EVEE + + + PIF STI+++CC+AQLSTFS QQ
Sbjct: 274 LKWIDKATLNK------NISETEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGML 327
Query: 369 MNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV---TKTEMGITHLQRIGT 424
MN KL S ++P SL P+IF+L+ P+Y F +K+ +L+RIG
Sbjct: 328 MNKKLFHSFEIPVPSLTAIPLIFMLLSIPLYEF----FGKKISSGNNNRSSSFNLKRIGL 383
Query: 425 GLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGM 484
GL LS V+MAV+A+VE KRK V++ I+ LW+ QYL L +D+ TL GM
Sbjct: 384 GLALSSVSMAVSAIVEAKRKHEVVHNN-------FRISVLWLVFQYLMLSVSDMLTLGGM 436
Query: 485 MEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYH 544
+EFF+ +AP +M+S++T+L W S A+G++ ST LV + N +T H WL G +LN
Sbjct: 437 LEFFYREAPSNMKSISTALGWCSTALGFFLSTTLVEVTNAVTGRLGHQ-WLGGEDLNKTR 495
Query: 545 LERFYWLMCILGGLNFLHFLFWAARY 570
LE FY L+C+L LN L+++FWA RY
Sbjct: 496 LELFYVLLCVLNTLNLLNYIFWAKRY 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/569 (37%), Positives = 332/569 (58%), Gaps = 24/569 (4%)
Query: 11 EGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN 70
+G VD+ P L+ + G A F+L E E LAY A NL+ YL+ +H S+A
Sbjct: 27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86
Query: 71 IVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130
VT + GT +L L G LADA++ Y + I F+G+ LT+ A +LKP C+
Sbjct: 87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146
Query: 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190
+ C + M F GLY++ALG GGIK ++ GA+Q+D+T R ++++FFN
Sbjct: 147 D----FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFN 202
Query: 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSP 250
++ F ++ GAL++ + +VWI++N+GW GFGI T + L+I F G+P YR + P GSP
Sbjct: 203 WFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSP 262
Query: 251 LTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIK 310
+T I +V+ A+ + SS V E T E++D+ ++ + + T+D +
Sbjct: 263 ITRISQVVVASF------RKSSVKVPE---DATLLYETQDKNSAIAGSR--KIEHTDDCQ 311
Query: 311 FLNRAL--------RNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFS 362
+L++A + + CTV +VEE+KI++++FPI+ S I+ + AQ+ST
Sbjct: 312 YLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMF 371
Query: 363 VQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI 422
VQQ MN K+GS ++PPA+L F ++I P+Y+ I+P ARK T + G T +QR+
Sbjct: 372 VQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRM 431
Query: 423 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLA 482
G GL +S++ MA AA+VEI R +A + GLV S P+PI+ LW QY LG+A++F
Sbjct: 432 GIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFI 491
Query: 483 GMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 542
G +EFF+ +P +MRSL ++L+ + A+G Y S++++++V T+ W+ NLN
Sbjct: 492 GQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWI-SDNLNS 550
Query: 543 YHLERFYWLMCILGGLNFLHFLFWAARYK 571
HL+ F+WL+ L +N + F AARYK
Sbjct: 551 GHLDYFFWLLAGLSLVNMAVYFFSAARYK 579
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 220/578 (38%), Positives = 329/578 (56%), Gaps = 40/578 (6%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
+D +C VD+R +P +HGG AA FVL + E +A A +NL+ Y+
Sbjct: 22 LDDLC--------VDFRGRPCRPSKHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNE 73
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
MHF S SAN+VTNF+GT FLL+L GGFL+D++ ++R ++ IE G +LL+VQAH
Sbjct: 74 MHFPLSKSANLVTNFIGTVFLLSLLGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHL 133
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
L+PP C ++ C E G KA L+ L +VALG G +K ++ HGA Q+
Sbjct: 134 PELRPPECNMKSTTIHCVEANGYKAATLYTALCLVALGSGCLKPNIISHGANQFQRK--- 190
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
++ S+FFN F S G LIA+T +VW++ + G GFG+S A + + + G+ F
Sbjct: 191 DLRKLSSFFNAAYFAFSMGQLIALTLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSF 250
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YRNK P+GS T I +V AAI T + + + VH T VK +
Sbjct: 251 YRNKPPSGSIFTPIAQVFVAAI--TKRKQICPSNPNMVHQPST--------DLVRVKPLL 300
Query: 301 PSQKPTEDIKFLNRALRNNPAY----PIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLA 356
S K +FL++A P CT+++V +VKI++ + PIF TI+ N LA
Sbjct: 301 HSNK----FRFLDKACIKTQGKAMESPWRLCTIEQVHQVKILLSVIPIFACTIIFNTILA 356
Query: 357 QLSTFSVQQAATMNTKL-GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 415
QL TFSVQQ ++MNT + + ++PPASL P I ++ P+Y +P ARK+T + G
Sbjct: 357 QLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSG 416
Query: 416 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS 475
I+ LQRIGTGL L+ +M AALVE KR+ + ++ ++ W+A Q+L G
Sbjct: 417 ISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNVM-------LSIFWIAPQFLIFGL 469
Query: 476 ADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY---RHT 532
+++FT G++EFF+ + SM+S T++++ S + G+Y S+VLVS VN +TS+
Sbjct: 470 SEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLVSTVNRVTSSNGSGTKE 529
Query: 533 PWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570
WL ++LN L+ FYWL+ L +NF ++LFW+ Y
Sbjct: 530 GWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/577 (36%), Positives = 325/577 (56%), Gaps = 31/577 (5%)
Query: 9 TWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSS 68
T +G VD PA + + G A F+L E E LAY +NLV YL ++ +++
Sbjct: 8 TQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATA 67
Query: 69 ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128
AN VTN+ GT ++ L G F+ADA+ Y I G+ LLT+ A LKP C
Sbjct: 68 ANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNC 127
Query: 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188
+ +C + AV F LY++ALG GGIK ++ GA+Q+DE + + ++S+F
Sbjct: 128 NAD----TCHPNSSQTAV-FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSF 182
Query: 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG 248
FN++ F ++ GALIA T +VWI+ N GW WGFG+ T +++++ F GS FYR + P G
Sbjct: 183 FNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGG 242
Query: 249 SPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHS--SPTCSNESRDEGNSNVKEKVPSQKPT 306
SPLT IF+V+ AA + S V E S T +ES +G+ + T
Sbjct: 243 SPLTRIFQVIVAAF------RKISVKVPEDKSLLFETADDESNIKGSRKLVH-------T 289
Query: 307 EDIKFLNRA--------LRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQL 358
+++KF ++A +++ P C+V +VEE+K ++ + P++ + I+ +Q+
Sbjct: 290 DNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQM 349
Query: 359 STFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGIT 417
ST V Q TM+ +G + ++P ASL +F + +L PVY+ IIP ARK T+ E G T
Sbjct: 350 STMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFT 409
Query: 418 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSAD 477
LQR+G GL++SI AM A ++E+ R V + + + ++ W QYL +G A+
Sbjct: 410 QLQRMGIGLVVSIFAMITAGVLEVVRLDY-VKTHNAYDQKQIHMSIFWQIPQYLLIGCAE 468
Query: 478 LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 537
+FT G +EFF+ AP +MRSL ++LS ++A+G Y STVLV++V IT W+
Sbjct: 469 VFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI-P 527
Query: 538 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 574
NLN HL+ F++L+ L LNFL +L+ + RYKY
Sbjct: 528 DNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYKK 564
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 207/589 (35%), Positives = 322/589 (54%), Gaps = 38/589 (6%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
M+ + T +G +D KPA + + G A F+L E E LAY ++NL+ YL K
Sbjct: 1 MEDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQ 60
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
M+ S++ V+N+ GT + L G F+ADA+ Y I G+ LLT+ A
Sbjct: 61 MNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASV 120
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
L P TC E +C G A+ F LY++ALG GGIK ++ GA+Q+D+T +
Sbjct: 121 PGLTP-TCSGE----TCHATAGQTAIT-FIALYLIALGTGGIKPCVSSFGADQFDDTDEK 174
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
++ +S+FFN++ F ++ GA+IA + +VWI+ N GW WG G+ T + +++ F GS F
Sbjct: 175 EKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNF 234
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YR + P GSPLT + +V+ A+ + S + E +ES N + + +
Sbjct: 235 YRLQKPGGSPLTRMLQVIVAS------CRKSKVKIPE--------DESLLYENQDAESSI 280
Query: 301 PSQKPTEDIKFL-------------NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMS 347
+ E K L N+ + ++ + CTV +VEE+K ++++ PI+ +
Sbjct: 281 IGSRKLEHTKILTFFDKAAVETESDNKGAAKSSSWKL--CTVTQVEELKALIRLLPIWAT 338
Query: 348 TIMLNCCLAQLSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFA 406
I+ +Q+ T V Q T++ +G + K+P ASL +F + +L APVY+ +I+PFA
Sbjct: 339 GIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFA 398
Query: 407 RKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 466
RK T E G T LQRIG GL++SI +M A ++E+ R L N E +P+T W
Sbjct: 399 RKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYN-EETIPMTIFWQ 457
Query: 467 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 526
QY +G A++FT G +EFF+ AP +MRSL ++LS ++A G Y ST LV++V +T
Sbjct: 458 VPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVT 517
Query: 527 STYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 575
+ W+ NLN+ HL+ F+WL+ L LNFL +L+ A Y Y T
Sbjct: 518 RSGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKT 565
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| 297734029 | 610 | unnamed protein product [Vitis vinifera] | 1.0 | 0.945 | 0.769 | 0.0 | |
| 225456664 | 579 | PREDICTED: nitrate transporter 1.2-like | 1.0 | 0.996 | 0.769 | 0.0 | |
| 356513553 | 590 | PREDICTED: nitrate transporter 1.2-like | 0.991 | 0.969 | 0.742 | 0.0 | |
| 356565069 | 593 | PREDICTED: nitrate transporter 1.2-like | 0.991 | 0.964 | 0.746 | 0.0 | |
| 255540909 | 591 | nitrate transporter, putative [Ricinus c | 1.0 | 0.976 | 0.772 | 0.0 | |
| 356497845 | 772 | PREDICTED: nitrate transporter 1.2-like | 0.984 | 0.735 | 0.706 | 0.0 | |
| 356500557 | 580 | PREDICTED: nitrate transporter 1.2-like | 0.984 | 0.979 | 0.712 | 0.0 | |
| 359473379 | 616 | PREDICTED: nitrate transporter 1.2-like | 0.982 | 0.920 | 0.723 | 0.0 | |
| 224100445 | 575 | predicted protein [Populus trichocarpa] | 0.980 | 0.984 | 0.713 | 0.0 | |
| 449440756 | 618 | PREDICTED: nitrate transporter 1.2-like | 0.984 | 0.919 | 0.710 | 0.0 |
| >gi|297734029|emb|CBI15276.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/577 (76%), Positives = 498/577 (86%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
MDG QL+TWEGYVDWRN+PA++GRHGGMLAA FVL VEVLENLAYLANASNLVLYLSKF
Sbjct: 32 MDGEQQLSTWEGYVDWRNRPAVKGRHGGMLAAFFVLVVEVLENLAYLANASNLVLYLSKF 91
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
MHFSPSSSANIVTNFMGTAFLLAL GGFL+DAFF+TY IY+ISAAIE +GLL+L +QAH
Sbjct: 92 MHFSPSSSANIVTNFMGTAFLLALLGGFLSDAFFSTYLIYLISAAIELVGLLILAIQAHV 151
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
SLKPP C L + CRE +GGKA MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T
Sbjct: 152 PSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPK 211
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS
Sbjct: 212 GRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASILISIPIFLLGSAT 271
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YR KIPTGSP+TTI KVL AAI N K +N SN+V + +SP+ + E + S KE V
Sbjct: 272 YRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMV 331
Query: 301 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 360
P Q PTE +KFLN A+ + P + ++CTVK+VEEVKIV++I PIF TIMLNCCLAQLST
Sbjct: 332 PRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACTIMLNCCLAQLST 391
Query: 361 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 420
FSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQ
Sbjct: 392 FSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQ 451
Query: 421 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 480
RIGTGLILSIVAM VAA VEIKRKRVA SGLV+SSEPLPITF WVALQYLFLGSADLFT
Sbjct: 452 RIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVALQYLFLGSADLFT 511
Query: 481 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 540
LAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++Y H WLFG+NL
Sbjct: 512 LAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNL 571
Query: 541 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 577
NHYHLE+FYWLMC L GLNFLH+L WA+RYKY + P
Sbjct: 572 NHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456664|ref|XP_002271787.1| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/577 (76%), Positives = 498/577 (86%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
MDG QL+TWEGYVDWRN+PA++GRHGGMLAA FVL VEVLENLAYLANASNLVLYLSKF
Sbjct: 1 MDGEQQLSTWEGYVDWRNRPAVKGRHGGMLAAFFVLVVEVLENLAYLANASNLVLYLSKF 60
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
MHFSPSSSANIVTNFMGTAFLLAL GGFL+DAFF+TY IY+ISAAIE +GLL+L +QAH
Sbjct: 61 MHFSPSSSANIVTNFMGTAFLLALLGGFLSDAFFSTYLIYLISAAIELVGLLILAIQAHV 120
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
SLKPP C L + CRE +GGKA MLFAGLY+VALGVGGIKGSL PHGAEQ+D+ T
Sbjct: 121 PSLKPPACDLGNISNPCREADGGKAGMLFAGLYLVALGVGGIKGSLPPHGAEQFDDNTPK 180
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
GRKQRS FFNYYVF LSCGALIAVTFVVWIEDNKGWQWGFGISTA+IL+SIPIFLLGS
Sbjct: 181 GRKQRSTFFNYYVFSLSCGALIAVTFVVWIEDNKGWQWGFGISTASILISIPIFLLGSAT 240
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YR KIPTGSP+TTI KVL AAI N K +N SN+V + +SP+ + E + S KE V
Sbjct: 241 YRTKIPTGSPITTIVKVLVAAICNAYKLRNCSNSVMSMATSPSYTTEIGGKEESCSKEMV 300
Query: 301 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 360
P Q PTE +KFLN A+ + P + ++CTVK+VEEVKIV++I PIF TIMLNCCLAQLST
Sbjct: 301 PRQAPTESLKFLNNAVIDKPFHSALECTVKQVEEVKIVLRILPIFACTIMLNCCLAQLST 360
Query: 361 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 420
FSVQQAATMNTKLG+LKVPPASLP+FPV+FI+ILAP YNH+IIPF R+ TKTEMGITHLQ
Sbjct: 361 FSVQQAATMNTKLGTLKVPPASLPIFPVLFIMILAPTYNHIIIPFTRRTTKTEMGITHLQ 420
Query: 421 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 480
RIGTGLILSIVAM VAA VEIKRKRVA SGLV+SSEPLPITF WVALQYLFLGSADLFT
Sbjct: 421 RIGTGLILSIVAMVVAAFVEIKRKRVAAESGLVHSSEPLPITFFWVALQYLFLGSADLFT 480
Query: 481 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 540
LAG+MEFFFT+AP SMRSLAT+LSWASLAMGYY S+VLVSIVN++T++Y H WLFG+NL
Sbjct: 481 LAGLMEFFFTEAPTSMRSLATALSWASLAMGYYLSSVLVSIVNSVTNSYSHHAWLFGNNL 540
Query: 541 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 577
NHYHLE+FYWLMC L GLNFLH+L WA+RYKY + P
Sbjct: 541 NHYHLEKFYWLMCGLSGLNFLHYLLWASRYKYRTASP 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513553|ref|XP_003525477.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/575 (74%), Positives = 492/575 (85%), Gaps = 3/575 (0%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q+ WEGYVDWRN+P ++GRHGGMLAA FVLA EVLENLA+LANASNLVLYLSKFMHFSP
Sbjct: 12 QVQVWEGYVDWRNRPTIKGRHGGMLAASFVLAAEVLENLAFLANASNLVLYLSKFMHFSP 71
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S+SANIVTNFMGTAFLLA+ GGFLADAF TTY +Y+ISA IEFMGLL+LT+QAH SLKP
Sbjct: 72 STSANIVTNFMGTAFLLAILGGFLADAFITTYSLYLISAGIEFMGLLMLTIQAHKPSLKP 131
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P CV+ + + C + G AVMLFAGLY+VALGVGGIKGSL PHGAEQ+DE T GRKQR
Sbjct: 132 PNCVIGNTDSPCDKIHGADAVMLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPEGRKQR 191
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
SAFFNY+VF LSCGALIAVTFVVWIEDNKGW+WG +STA+ILLSIP+F+LGS YR KI
Sbjct: 192 SAFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASILLSIPVFILGSHKYRTKI 251
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKEKVPSQ 303
P GSP+T++FKVL AAI N CK+KNS+NAV + +SP+ + E D E + KE V Q
Sbjct: 252 PAGSPITSMFKVLVAAICNNCKAKNSTNAVRSMTTSPSHATEREDGEEESKTTKEVVQGQ 311
Query: 304 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSV 363
TE++KFLN+A+ +P+++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQLSTFSV
Sbjct: 312 TLTENLKFLNKAVMEPAVHPMLECTVKEVEEVKIVTRILPIFMSTIMLNCCLAQLSTFSV 371
Query: 364 QQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423
QQ+ATM+T LGS KVPPASLPVFPV+F++ILAP+YNH+I+PFARK TKTEMGITHLQRIG
Sbjct: 372 QQSATMSTMLGSFKVPPASLPVFPVLFVMILAPLYNHIIVPFARKATKTEMGITHLQRIG 431
Query: 424 TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAG 483
TGL LSIVAMAVAALVE KRK+ A GL++S++PLPITFLWVALQY+FLGSADLFTLAG
Sbjct: 432 TGLFLSIVAMAVAALVETKRKKTAFKFGLLDSAKPLPITFLWVALQYIFLGSADLFTLAG 491
Query: 484 MMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 543
MMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +T + HTPWL G+NLNHY
Sbjct: 492 MMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVTGAFGHTPWLLGANLNHY 551
Query: 544 HLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 577
HLERFYWLMC+L GLNF+HFLFWA YKY ST P
Sbjct: 552 HLERFYWLMCVLSGLNFVHFLFWANSYKYRCSTKP 586
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565069|ref|XP_003550767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/577 (74%), Positives = 492/577 (85%), Gaps = 5/577 (0%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q+ WEGYVDWRNKPA++G HGGMLAA FVLA EVLENLA+LANASNLVLYLSKFMHFSP
Sbjct: 16 QVQVWEGYVDWRNKPAIKGHHGGMLAASFVLAAEVLENLAFLANASNLVLYLSKFMHFSP 75
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S+SANIVT+FMGTAFLLA+ GGFLADAF TTY IY+ISA IEFMGLL+LT+QAH SLKP
Sbjct: 76 STSANIVTDFMGTAFLLAILGGFLADAFITTYSIYLISAVIEFMGLLMLTIQAHKPSLKP 135
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P CV+ + + C + GG AVMLFAGLY+VALGVGGIKGSL PHGAEQ+DE T GRKQR
Sbjct: 136 PNCVIGNTDSPCDKIHGGDAVMLFAGLYLVALGVGGIKGSLPPHGAEQFDENTPEGRKQR 195
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S+FFNY+VF LSCGALIAVTFVVWIEDNKGW+WG +STA+ILLSIP+FLLGS YR KI
Sbjct: 196 SSFFNYFVFSLSCGALIAVTFVVWIEDNKGWKWGLVVSTASILLSIPVFLLGSHKYRTKI 255
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRD--EGNSNVKEKVPSQ 303
P GSP+T++FKVL AAI N CK+KNSSNAV + + P+ + E +D E + KE VP Q
Sbjct: 256 PAGSPITSMFKVLVAAICNNCKAKNSSNAVISMTTGPSHATERKDGEEQSKTRKEVVPGQ 315
Query: 304 KPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSV 363
T+++KFLN+A+ +P+++CTVKEVEEVKIV +I PIFMSTIMLNCCLAQLSTFSV
Sbjct: 316 TLTDNLKFLNKAVMEPAVHPMLECTVKEVEEVKIVARILPIFMSTIMLNCCLAQLSTFSV 375
Query: 364 QQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423
QQ+ATMNT LGS KVPPASLPVFPV+FI+ILAP+YNH+I+PFARK TKTEMGITHLQRIG
Sbjct: 376 QQSATMNTMLGSFKVPPASLPVFPVLFIMILAPLYNHIIVPFARKATKTEMGITHLQRIG 435
Query: 424 TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE-PLPITFLWVALQYLFLGSADLFTLA 482
TGL LSIVAMAVAALVE KRK+ A GL++S + PLPITFLWVALQY+FLGSADLFTLA
Sbjct: 436 TGLFLSIVAMAVAALVETKRKKTATKFGLLDSPKVPLPITFLWVALQYIFLGSADLFTLA 495
Query: 483 GMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTY-RHTPWLFGSNLN 541
GMMEFFFT+AP SMRSLAT+LSWASLAMGY+ STVLVS +N +T + HTPWL G+NLN
Sbjct: 496 GMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVTGAFGSHTPWLLGANLN 555
Query: 542 HYHLERFYWLMCILGGLNFLHFLFWAARYKYS-STGP 577
HYHLERFYWLMC L GLNF+HFLFWA YKY ST P
Sbjct: 556 HYHLERFYWLMCALSGLNFVHFLFWANSYKYRCSTKP 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540909|ref|XP_002511519.1| nitrate transporter, putative [Ricinus communis] gi|223550634|gb|EEF52121.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/577 (77%), Positives = 505/577 (87%)
Query: 1 MDGICQLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF 60
M+ L TWEGY+DW+N+PAL GRHGGMLAA FVL VEVLENLAYLANASNLVLYLSKF
Sbjct: 1 MEEAHNLKTWEGYLDWKNRPALCGRHGGMLAASFVLVVEVLENLAYLANASNLVLYLSKF 60
Query: 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120
MHFSPS SANIVTNFMGTAFLLAL GGFLADAFFTTY IY+ISA IEFMGLL+LTVQA +
Sbjct: 61 MHFSPSGSANIVTNFMGTAFLLALLGGFLADAFFTTYHIYLISAVIEFMGLLVLTVQARS 120
Query: 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180
SLKP CV SC + +G KAVMLF GLY+VALGVGGIKGSL HGAEQ+DE TQ
Sbjct: 121 SSLKPLPCVSASTSISCEQVDGSKAVMLFTGLYLVALGVGGIKGSLPSHGAEQFDENTQQ 180
Query: 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240
GRKQRSAFFNYYVFCLS GALIAVTF VWIEDNKGWQWGFGISTATILLSIP+FLLGSP
Sbjct: 181 GRKQRSAFFNYYVFCLSFGALIAVTFAVWIEDNKGWQWGFGISTATILLSIPVFLLGSPT 240
Query: 241 YRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKV 300
YRNK+P+GSP+TTI KVL AA++NTCK + +NAV V +S + + E+ + +S ++E+
Sbjct: 241 YRNKVPSGSPITTILKVLIAAVYNTCKPQTPNNAVMGVDTSSSYTTETSEVEDSYIREEA 300
Query: 301 PSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST 360
+Q PTE ++FL+RA+ N P ++CTVK+VEEVK+V+KI PIFMSTIMLNCCLAQLST
Sbjct: 301 LNQTPTESLEFLDRAVMNKSINPTLRCTVKDVEEVKVVIKILPIFMSTIMLNCCLAQLST 360
Query: 361 FSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ 420
FSVQQA+TMNTKLGSLKVPPASLPVFPVIFI+ILAP+YNH+I PFARKVTK+EMGITHLQ
Sbjct: 361 FSVQQASTMNTKLGSLKVPPASLPVFPVIFIMILAPIYNHIISPFARKVTKSEMGITHLQ 420
Query: 421 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFT 480
RIGTGL+LSIVAMA+AALVE+KRK VA ++GL +S++PLPITFLW+ALQYLFLGSADLFT
Sbjct: 421 RIGTGLVLSIVAMALAALVEMKRKGVATSAGLTDSAKPLPITFLWIALQYLFLGSADLFT 480
Query: 481 LAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 540
LAGMMEFFFT+APLSMRSLATSLSWASLAMGYY S+VLVSIVN +T YRHT WLFGSNL
Sbjct: 481 LAGMMEFFFTEAPLSMRSLATSLSWASLAMGYYLSSVLVSIVNAVTGAYRHTSWLFGSNL 540
Query: 541 NHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTGP 577
NHYHLERFYWLMCIL G+NFLH+LFW+ RY+Y ST P
Sbjct: 541 NHYHLERFYWLMCILSGINFLHYLFWSCRYRYKSTSP 577
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497845|ref|XP_003517767.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/573 (70%), Positives = 480/573 (83%), Gaps = 5/573 (0%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q++TWEGYVDWRNKPALRGRHGGMLAA FVL E+LENLA+LANASNLVLYL +MH SP
Sbjct: 200 QVSTWEGYVDWRNKPALRGRHGGMLAASFVLVAEILENLAFLANASNLVLYLRHYMHMSP 259
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFMGTAF+LAL GGFL+DAFFT+YR+Y+ISA IEF+GL++LT+QA SLKP
Sbjct: 260 SKSANNVTNFMGTAFILALLGGFLSDAFFTSYRVYLISAVIEFLGLIVLTIQARDPSLKP 319
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P C L+ C+E KA MLF GLY+VALGVGGIKGSL HG EQ+DETT GRKQR
Sbjct: 320 PKCDLD---TPCQEVNDSKAAMLFIGLYLVALGVGGIKGSLPAHGGEQFDETTPSGRKQR 376
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCLSCGALIAVTFVVWIEDNKGWQWGF IST +I +SIP+FL GS Y+NKI
Sbjct: 377 STFFNYFVFCLSCGALIAVTFVVWIEDNKGWQWGFAISTISIFVSIPVFLAGSATYKNKI 436
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGN-SNVKEKVPSQK 304
P+GSPLTTI KVL AA+ N C KN+S+AV + SSP+ + R E K ++
Sbjct: 437 PSGSPLTTILKVLVAALLNICTYKNTSSAVVNMASSPSNPHSGRMESKLETAKASTIAET 496
Query: 305 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQ 364
PT +KFLN+A+ N P Y ++CTV++VE+VK+V+K+ PIF TI+LNCCLAQLSTFSV+
Sbjct: 497 PTSHLKFLNKAVTNKPRYSSLECTVQQVEDVKVVLKVLPIFGCTIILNCCLAQLSTFSVE 556
Query: 365 QAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT 424
QAATM+TKLGSLKVPP+SLPVFPV+FI+ILAP+Y+H+IIP+ RK TK+EMGITHLQRIG
Sbjct: 557 QAATMDTKLGSLKVPPSSLPVFPVVFIMILAPIYDHIIIPYTRKATKSEMGITHLQRIGF 616
Query: 425 GLILSIVAMAVAALVEIKRKRVAVNSGLVN-SSEPLPITFLWVALQYLFLGSADLFTLAG 483
GL+LSIVAMAVAALVEIKRKRVA +SGL++ ++PLPITFLW+A QYLFLGSADLFTLAG
Sbjct: 617 GLVLSIVAMAVAALVEIKRKRVATHSGLLDYPTKPLPITFLWIAFQYLFLGSADLFTLAG 676
Query: 484 MMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHY 543
++EFFF++AP+ MRSLATSLSWASLAMGYY S+V+VSIVN++T H PWL G+N NHY
Sbjct: 677 LLEFFFSEAPIRMRSLATSLSWASLAMGYYLSSVIVSIVNSVTGNGTHKPWLSGANFNHY 736
Query: 544 HLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
HLE+FYWLMC+L GLNFLH+L+WA RYKY TG
Sbjct: 737 HLEKFYWLMCVLSGLNFLHYLYWATRYKYRGTG 769
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500557|ref|XP_003519098.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/574 (71%), Positives = 485/574 (84%), Gaps = 6/574 (1%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q++TWEGYVDWRNKPALRGRHGGMLAA FVL E+LENLA+LANASNLVLYL ++MH SP
Sbjct: 7 QVSTWEGYVDWRNKPALRGRHGGMLAASFVLVAEILENLAFLANASNLVLYLRQYMHMSP 66
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFMGTAFLLAL GGFL+DAFFTTYR+Y+ISA IEF+GL++LT+QA SLKP
Sbjct: 67 SKSANNVTNFMGTAFLLALLGGFLSDAFFTTYRVYLISAVIEFLGLIVLTIQARDPSLKP 126
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P C L+ C+E G KA MLF GLY+VALGVGGIKGSL HG EQ+DETT GRKQR
Sbjct: 127 PKCDLD---TPCQEVNGSKAAMLFIGLYLVALGVGGIKGSLPAHGGEQFDETTPSGRKQR 183
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCLSCGALIAVTFVVWIEDNKGWQWGF IST +I +SIP+FL GSP Y+NKI
Sbjct: 184 STFFNYFVFCLSCGALIAVTFVVWIEDNKGWQWGFAISTISIFVSIPVFLAGSPTYKNKI 243
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSN-VKEKVPSQK 304
P+GSPLTTI KVL AA+ N+C KN+S+AV + SSP+ + R E VK ++
Sbjct: 244 PSGSPLTTILKVLIAALLNSCTYKNTSSAVVNMTSSPSNPHSGRTESQQETVKASTTTET 303
Query: 305 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQ 364
PT ++KFLN+A+ N P Y ++CTV++VE+VK+V+K+ PIF TI+LNCCLAQLSTFSV+
Sbjct: 304 PTSNLKFLNKAVTNKPRYSSLECTVQQVEDVKVVLKMLPIFACTIILNCCLAQLSTFSVE 363
Query: 365 QAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT 424
QAATM+TKLGSLKVPP+SLPVFPV+FI+ILAP+Y+H+IIP+ RK TK+EMGITHLQRIG
Sbjct: 364 QAATMDTKLGSLKVPPSSLPVFPVVFIMILAPIYDHIIIPYTRKATKSEMGITHLQRIGF 423
Query: 425 GLILSIVAMAVAALVEIKRKRVAVNSGLVNS-SEPLPITFLWVALQYLFLGSADLFTLAG 483
GL+LSIVAMAVAA+VEIKRKRVA SGL++ ++PLPITFLW+A QYLFLGSADLFTLAG
Sbjct: 424 GLVLSIVAMAVAAIVEIKRKRVATQSGLLDDPTKPLPITFLWIAFQYLFLGSADLFTLAG 483
Query: 484 MMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHT-PWLFGSNLNH 542
++EFFFT+AP+ MRSLATSLSWASLAMGYY S+V+VSIVN++T H PWL G+N NH
Sbjct: 484 LLEFFFTEAPIRMRSLATSLSWASLAMGYYLSSVIVSIVNSVTGNGTHNKPWLSGANFNH 543
Query: 543 YHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
YHLE+FYWLMC+L GLNFLH+L+WA +YKY TG
Sbjct: 544 YHLEKFYWLMCVLSGLNFLHYLYWATKYKYRGTG 577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473379|ref|XP_002269693.2| PREDICTED: nitrate transporter 1.2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/572 (72%), Positives = 473/572 (82%), Gaps = 5/572 (0%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q + WEGYVDWR +PALRGRHGGMLAA FVL VE+LENLA+L+NASNLV YLS +MHFSP
Sbjct: 37 QQHRWEGYVDWRGRPALRGRHGGMLAASFVLGVEILENLAFLSNASNLVRYLSDYMHFSP 96
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFMGTAFLLAL GGFL+DAFFT Y IY+ISA IEF+GL++LT+QA + SLKP
Sbjct: 97 SKSANNVTNFMGTAFLLALLGGFLSDAFFTPYHIYLISAVIEFLGLIVLTIQARSPSLKP 156
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
C SC+ GGKA MLF GLY+VALGVGGIKGSL HGAEQ DE+T GRKQR
Sbjct: 157 LECKKGTADTSCQVLSGGKAGMLFVGLYLVALGVGGIKGSLPAHGAEQLDESTPQGRKQR 216
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCLSCGALIAVT VVW+EDNKGW+WGFGI+T +I SIP+FL GS YRNKI
Sbjct: 217 STFFNYFVFCLSCGALIAVTLVVWVEDNKGWEWGFGIATISIFASIPVFLGGSATYRNKI 276
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTC-SNESRDEGNSNVKEKVPSQK 304
P+GSPLTTIFKVL AA N ++ SNAV + +SP+ + S++ N K VP+Q
Sbjct: 277 PSGSPLTTIFKVLIAATLN----RSPSNAVASMATSPSYPTQNSKEPEEENGKAIVPAQT 332
Query: 305 PTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQ 364
PTE + FLNRA+ N P Y V+CTV++VEEVKIV+KI PIF TIMLNCCLAQLSTFSVQ
Sbjct: 333 PTESLGFLNRAVVNKPVYKAVECTVQQVEEVKIVIKILPIFACTIMLNCCLAQLSTFSVQ 392
Query: 365 QAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT 424
QAATMNTKLGSLKVPPASLP+FPV+F++ LAP+Y+H IIPFARKVTKTEMGI+HLQRIG
Sbjct: 393 QAATMNTKLGSLKVPPASLPIFPVLFMMTLAPIYDHFIIPFARKVTKTEMGISHLQRIGI 452
Query: 425 GLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGM 484
GL+ SI+AMAVAALVE+KRKRVA N GL++S+E LPITF W+A QYLFLGSADLFTLAG+
Sbjct: 453 GLVFSIIAMAVAALVEVKRKRVASNLGLIDSTEQLPITFFWIAFQYLFLGSADLFTLAGL 512
Query: 485 MEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYH 544
MEFFFT+AP MRSLATSLSWASLAMGYY S+V+VSIVNN + H PWL G LNHYH
Sbjct: 513 MEFFFTEAPTGMRSLATSLSWASLAMGYYLSSVIVSIVNNFLGSLNHRPWLSGRKLNHYH 572
Query: 545 LERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
LERFYWLMC+L GLNFLH+LFWA RYKY STG
Sbjct: 573 LERFYWLMCVLTGLNFLHYLFWACRYKYRSTG 604
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100445|ref|XP_002311879.1| predicted protein [Populus trichocarpa] gi|222851699|gb|EEE89246.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/569 (71%), Positives = 479/569 (84%), Gaps = 3/569 (0%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q WEGYVDWRN+PALRG HGGMLAA +VL VE+LENLAYLANASNLV+YLS++MH SP
Sbjct: 6 QPTRWEGYVDWRNRPALRGLHGGMLAASYVLGVEILENLAYLANASNLVIYLSEYMHLSP 65
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFMGT+FLLAL GGFLAD FFTTY +++ISAAIEF+GL++LTVQA + SLKP
Sbjct: 66 SKSANNVTNFMGTSFLLALLGGFLADTFFTTYHVFLISAAIEFLGLVILTVQARSSSLKP 125
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P C + C++ +G KA MLF GLY+VALGVGGIKGSL HGAEQ+DE+T GRKQR
Sbjct: 126 PACNPSNPTIPCQQIDGAKAAMLFTGLYLVALGVGGIKGSLPAHGAEQFDESTPQGRKQR 185
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCLSCGALIAVTFVVW+EDNKGW WGFGIST ILLSIPIFL GS YRNKI
Sbjct: 186 STFFNYFVFCLSCGALIAVTFVVWVEDNKGWVWGFGISTIAILLSIPIFLAGSAAYRNKI 245
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKP 305
P+GSPL TI KVL AA NTC S++S NA+ + +SP+ N + + N +P++ P
Sbjct: 246 PSGSPLATISKVLVAAGVNTCMSRSSGNAIASLTTSPSNPNPTSKDAIDNSIAVMPAETP 305
Query: 306 TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ 365
T+ + +LN+A+ N P + ++CTV++VEEVKIV+KIFPIF TIMLNCCLAQLSTFSVQQ
Sbjct: 306 TKSLDWLNKAVVNKPIHSALECTVQQVEEVKIVIKIFPIFACTIMLNCCLAQLSTFSVQQ 365
Query: 366 AATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG 425
A TM+TKLGSLKVPPASLPVFPV+FI++LAPVY+H+IIPFARK+TK+EMGITHLQRIG G
Sbjct: 366 ADTMDTKLGSLKVPPASLPVFPVVFIMMLAPVYDHLIIPFARKLTKSEMGITHLQRIGIG 425
Query: 426 LILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMM 485
L+LSI+AMAVAALVEIKRKRVA NSGLV+ LPITF W+A QYLFLGSADLFTLAG++
Sbjct: 426 LVLSIIAMAVAALVEIKRKRVAANSGLVDK---LPITFFWIAFQYLFLGSADLFTLAGLL 482
Query: 486 EFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL 545
EFFFT+AP MRSLA SLSWASLAMGYY S+V+VSIVNN+T ++ PWL G+N+NH+HL
Sbjct: 483 EFFFTEAPAGMRSLAMSLSWASLAMGYYLSSVIVSIVNNVTGNSKNRPWLSGTNINHHHL 542
Query: 546 ERFYWLMCILGGLNFLHFLFWAARYKYSS 574
ERFYWL+C+L LNFLH+LFWA RYKYS+
Sbjct: 543 ERFYWLLCVLSVLNFLHYLFWATRYKYST 571
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440756|ref|XP_004138150.1| PREDICTED: nitrate transporter 1.2-like [Cucumis sativus] gi|449477315|ref|XP_004154989.1| PREDICTED: nitrate transporter 1.2-like [Cucumis sativus] gi|430736181|gb|AGA60120.1| nitrate transporter NRT1.2B [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/577 (71%), Positives = 482/577 (83%), Gaps = 9/577 (1%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
+LN WE YVDWR +PA++GRHGGMLAA FVL VEVLENLA+LANASNLVLYLSKFMH+SP
Sbjct: 20 RLNLWEDYVDWRKRPAVKGRHGGMLAASFVLVVEVLENLAFLANASNLVLYLSKFMHYSP 79
Query: 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SANIVTNFMGTAFLLAL GGFL+DAFFTTY I++ISAAIE +GL++LT+QA LKP
Sbjct: 80 SESANIVTNFMGTAFLLALLGGFLSDAFFTTYSIFLISAAIESLGLVILTLQADVPYLKP 139
Query: 126 PTCVLEDGIAS---CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182
CV + + + C + EGG+A MLFAGLY+VALGVGGIKG+L PHGAEQ+DET+ GR
Sbjct: 140 SRCV-SNAVGNGNPCHKVEGGEAAMLFAGLYMVALGVGGIKGALPPHGAEQFDETSFEGR 198
Query: 183 KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 242
K+RS FFNY++FCLSCGALIAVT VVW+EDNKGWQWGFGIST TIL+SIPIFLLGSP YR
Sbjct: 199 KKRSVFFNYFIFCLSCGALIAVTLVVWMEDNKGWQWGFGISTLTILISIPIFLLGSPTYR 258
Query: 243 NKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNE-----SRDEGNSNVK 297
K P GSP+TTIFKVL +A FN K K +N V + +S S+ + ++ + K
Sbjct: 259 IKTPAGSPITTIFKVLVSAAFNNRKKKTRNNVVMNISTSSVSSDTTTDIIADEQRQTMEK 318
Query: 298 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQ 357
E PS T+ ++FLN+A +NP++P + CTVK+VEE KIV+KI PIF STIMLNCCLAQ
Sbjct: 319 ESDPSPIQTQAMEFLNKATIDNPSHPQLNCTVKQVEEAKIVLKILPIFTSTIMLNCCLAQ 378
Query: 358 LSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGIT 417
LSTFSVQQAATMNTKLGSLKVPPASLPVFPV+FI+ILAP YNH+++P ARK+TK+EMGIT
Sbjct: 379 LSTFSVQQAATMNTKLGSLKVPPASLPVFPVLFIMILAPSYNHLVLPVARKLTKSEMGIT 438
Query: 418 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSAD 477
HLQRIGTGL+LS VAMAVAALVE KRK +A+ + ++S +PLPITFLWVALQYLFLGSAD
Sbjct: 439 HLQRIGTGLVLSTVAMAVAALVETKRKNLAIKTHKLDSPDPLPITFLWVALQYLFLGSAD 498
Query: 478 LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 537
LF+LAGMMEFFFT+APLSMRSLAT+LSWASLAMGYYFS+VLV++VN +T PWL G
Sbjct: 499 LFSLAGMMEFFFTEAPLSMRSLATALSWASLAMGYYFSSVLVALVNGVTKACGLRPWLSG 558
Query: 538 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 574
+LNHYHLERFYW+MCIL GLNFL +LFWA+RY Y S
Sbjct: 559 KSLNHYHLERFYWVMCILSGLNFLQYLFWASRYTYRS 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| TAIR|locus:2196739 | 585 | NRT1:2 "AT1G69850" [Arabidopsi | 0.982 | 0.969 | 0.617 | 9.5e-192 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.963 | 0.980 | 0.610 | 5.5e-180 | |
| TAIR|locus:2170683 | 589 | AT5G62730 [Arabidopsis thalian | 0.729 | 0.714 | 0.622 | 2.4e-179 | |
| TAIR|locus:2090230 | 521 | AT3G25280 [Arabidopsis thalian | 0.426 | 0.472 | 0.387 | 4.9e-91 | |
| TAIR|locus:2090325 | 515 | AT3G25260 [Arabidopsis thalian | 0.511 | 0.572 | 0.351 | 6.2e-91 | |
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.948 | 0.925 | 0.368 | 1.5e-90 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.944 | 0.931 | 0.342 | 5.6e-84 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.942 | 0.954 | 0.339 | 4.7e-80 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.941 | 0.941 | 0.347 | 1.6e-79 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.961 | 0.973 | 0.325 | 2e-79 |
| TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1858 (659.1 bits), Expect = 9.5e-192, P = 9.5e-192
Identities = 359/581 (61%), Positives = 434/581 (74%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
+++ WEGY DWRN+ A++GRHGGMLAA FVL VE+LENLAYLANASNLVLYL ++MH SP
Sbjct: 6 EVSRWEGYADWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSP 65
Query: 66 SSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
S SAN VTNFM ++I++ISA+IEF+GL++LT+QA T SL P
Sbjct: 66 SKSANDVTNFMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMP 125
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
P+C D +C E G KA MLF GLY+VALGVGGIKGSLA HGAEQ+DE+T GRKQR
Sbjct: 126 PSC---DS-PTCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQR 181
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFNY+VFCL+CGAL+AVTFVVW+EDNKGW+WGFG+ST I +SI IFL GS FYRNKI
Sbjct: 182 STFFNYFVFCLACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKI 241
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPT--CSNESRDEGNSNVKEKVPSQ 303
P GSPLTTI KVL AA C S +SSNAV + SP+ C ++ + E S + + P Q
Sbjct: 242 PCGSPLTTILKVLLAASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQ 301
Query: 304 K----P----TEDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCL 355
+ P T +K LN A P + +++CT PIF TIMLNCCL
Sbjct: 302 EEALPPRAQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCL 361
Query: 356 AQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMG 415
AQLSTFSVQQAA+MNTK+GSLK+PPASLP+FPV+FI+ILAP+Y+H+IIPFARK TKTE G
Sbjct: 362 AQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETG 421
Query: 416 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGS 475
+THLQRIG GL+LSI+AMAVAALVEIKRK VA +SGL++S E LP+TFLW+ALQYLFLGS
Sbjct: 422 VTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGS 481
Query: 476 ADLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWL 535
ADLFTLAG++E+FFT+AP SMR MGYY S+V+VSIVN+IT + +TPWL
Sbjct: 482 ADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITGSSGNTPWL 541
Query: 536 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
G ++N Y L+ FYWLMC+L NFLH+LFWA RYKY STG
Sbjct: 542 RGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYRSTG 582
|
|
| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1747 (620.0 bits), Expect = 5.5e-180, P = 5.5e-180
Identities = 348/570 (61%), Positives = 410/570 (71%)
Query: 7 LNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPS 66
++ WEGY DWRNK ALRGRHGGMLAA FVLAVE+LENLA+LANASNLVLYL FMH S +
Sbjct: 9 VSKWEGYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLA 68
Query: 67 SSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPP 126
S++ VT FM + I++ISA+IEF+GL+LLT+QA SL PP
Sbjct: 69 RSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPP 128
Query: 127 TCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186
C + C G KA LF GLY+V+LG+GGIKGSL HGAEQ+DE T GRKQRS
Sbjct: 129 PCKSSAALR-CEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRS 187
Query: 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIP 246
FFNYYVFCLSCGAL+AVTFVVWIEDNKGW+WGFG+ST +I LSI +FLLGS FY+NKIP
Sbjct: 188 TFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIP 247
Query: 247 TGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPT 306
GSPLTTIFKVL AA +C SK SSN T SR E S +EK PSQ T
Sbjct: 248 RGSPLTTIFKVLLAASIVSCSSKTSSNHFT-----------SR-EVQSEHEEKTPSQSLT 295
Query: 307 EDIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQA 366
+ LN+A+ + ++CT PIF TIMLNCCLAQLST+SV QA
Sbjct: 296 NSLTCLNKAIEGKTHHIWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQA 355
Query: 367 ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGL 426
ATMN K+ + VP ASLPVFPV+F+LILAP Y+H+IIPFARKVTK+E+GITHLQRIG GL
Sbjct: 356 ATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGL 415
Query: 427 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 486
+LSIVAMAVAALVE+KRK+VA +GL++S E LPITFLW+ALQYLFLGSADLFTLAG++E
Sbjct: 416 VLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLE 475
Query: 487 FFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 546
FFFT+AP SMR +GYY S+V+V IVN +T + +PWL G LN L+
Sbjct: 476 FFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWL-GEKLNRNRLD 534
Query: 547 RFYWLMCILGGLNFLHFLFWAARYKYSSTG 576
FYWLMC+L +NFLH+LFWA RYKY STG
Sbjct: 535 LFYWLMCVLSVVNFLHYLFWAKRYKYISTG 564
|
|
| TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 2.4e-179, Sum P(2) = 2.4e-179
Identities = 271/435 (62%), Positives = 320/435 (73%)
Query: 146 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVT 205
V LF GLY+VALGVGGIKGSL PHGAEQ+DE T GR+QRS FFNY++F LSCGALIAVT
Sbjct: 160 VFLFVGLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVT 219
Query: 206 FVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT 265
VVW+EDNKGW +GFG+STA IL+S+P+FL GS YR K+P+GSP+TT+FKVLTAA++
Sbjct: 220 VVVWLEDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAK 279
Query: 266 CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPI- 324
K + +S V H+ C ++S + N + + FL +R + P
Sbjct: 280 YKKRRTSRIVVTCHTRNDC-DDSVTKQNCDGDDGFLGS-------FLGEVVRERESLPRP 331
Query: 325 VQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLP 384
++CT PIFMSTIMLNCCLAQLSTFSVQQA+TMNTKLGS VPPA+LP
Sbjct: 332 LRCTEEQVKDVKIVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALP 391
Query: 385 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRK 444
VFPV+F++ILAP YNH+++P ARK TKTE GITHLQRIGTGL+LSIVAMAVAALVE KRK
Sbjct: 392 VFPVVFMMILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRK 451
Query: 445 RVAV-----NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRXX 499
V V N+ SS PLPITFLWVA+QY+FLGSADLFTLAGMMEFFFT+AP +MR
Sbjct: 452 HVVVSCCSNNNSSSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSL 511
Query: 500 XXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLN 559
MGYYFS+VLVS VN +T H PWL G NLN YHLERFYWLMC+L G+N
Sbjct: 512 ATSLSWASLAMGYYFSSVLVSAVNFVTGLNHHNPWLLGENLNQYHLERFYWLMCVLSGIN 571
Query: 560 FLHFLFWAARYKYSS 574
FLH+LFWA+RY Y S
Sbjct: 572 FLHYLFWASRYVYRS 586
|
|
| TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 100/258 (38%), Positives = 142/258 (55%)
Query: 11 EGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN 70
E + DW+ K A+ G+HGG+ AA V V ++EN+ ++AN N V Y MH++P+++AN
Sbjct: 7 EKFEDWKGKEAIPGKHGGIRAASIVCVVVMMENIVFIANGFNFVKYFMGSMHYTPATAAN 66
Query: 71 IVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130
+VTNFM + +++ IE MGL+LLT QAH L P
Sbjct: 67 MVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVFCCIELMGLILLTFQAHNPKLLPE---- 122
Query: 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190
+D S + + +LF GLY +A+G GG+K SL HG +Q D + S FF+
Sbjct: 123 KDKTPSTLQ-----SAILFTGLYAMAIGTGGLKASLPSHGGDQIDRRNP---RLISRFFD 174
Query: 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSP 250
+ F + G L+AVT V+WIE+ KGW W F IS + ++ IF +G PFYR K P GSP
Sbjct: 175 WLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNGSP 234
Query: 251 LTTIFKVLTAAIFNTCKS 268
L I V+ +A N KS
Sbjct: 235 LKKIAIVIISAARNRNKS 252
|
|
| TAIR|locus:2090325 AT3G25260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 109/310 (35%), Positives = 168/310 (54%)
Query: 6 QLNTWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP 65
Q+ E + DWR K A+ G+HGG+ AA VE +EN+ +LA ++N ++Y +K M++S
Sbjct: 2 QIEMEEKFEDWRGKEAISGKHGGIKAAFIACVVETMENMVFLACSTNFMMYFTKSMNYST 61
Query: 66 SSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125
+A +VTNF+ + +V+ +IE +GL++LT+QAH L+P
Sbjct: 62 PKAATMVTNFVGTSFLLTIFGGFVADSFLTRFAAFVLFGSIELLGLIMLTLQAHITKLQP 121
Query: 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185
+ G ++ ++ +LF GLY +A+GVGG+KGSL HG +Q Q +
Sbjct: 122 -----QGG----KKPSTPQSTVLFTGLYAIAIGVGGVKGSLPAHGGDQIGTRNQ---RLI 169
Query: 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
S FFN+Y F + G +AVT +VWIE+N GW F ISTA + +I +F+ G P YR K
Sbjct: 170 SGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASAIFVFVAGCPMYRFKR 229
Query: 246 PTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCS---NESRDEGNSNVKEKVPS 302
P GSPLT I V +A N + + VT+ H+S S N+ + + + K+ +
Sbjct: 230 PAGSPLTRIVNVFVSAARNRNRFVTDAEVVTQNHNSTDKSIHHNKFKFLNKAKLNNKISA 289
Query: 303 QKPTEDIKFL 312
+ E FL
Sbjct: 290 TQVEETRTFL 299
|
|
| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 214/580 (36%), Positives = 305/580 (52%)
Query: 8 NTWE----GYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHF 63
N WE VDWR +P+ +HGGM AA FVL ++ E + A +NL+ Y+ MHF
Sbjct: 20 NNWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHF 79
Query: 64 SPSSSANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSL 123
S +ANIVTNF+ + +I +E G +LL+VQAH L
Sbjct: 80 PLSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQL 139
Query: 124 KPPTC-VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182
KPP C L D +C E +G KA++ F LY+VALG G +K ++ HGA+Q+ ++
Sbjct: 140 KPPKCNPLID--QTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQS 197
Query: 183 KQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 242
K+ S++FN F S G LIA+T +VW++ + G GFG+S A + + I + G+ ++R
Sbjct: 198 KRLSSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFR 257
Query: 243 NKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPS 302
NK P S T I V+ AAI K K +S S P + N V
Sbjct: 258 NKRPRRSIFTPIAHVIVAAIL---KRKLASP------SDPRMLHGDHHVANDVVPSSTLP 308
Query: 303 QKPTEDIKFLNRAL-----RNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQ 357
P +FL++A N P CT PIF STI+ N LAQ
Sbjct: 309 HTPR--FRFLDKACIKIQDTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQ 366
Query: 358 LSTFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGI 416
L TFSVQQ ++MNT+L S +PPASL P I ++ L P+Y+ ++PFARK+T GI
Sbjct: 367 LQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGI 426
Query: 417 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSA 476
L RIG GL LS +M AA++E KR+ +V G + ++ W+ Q+L G +
Sbjct: 427 PPLTRIGIGLFLSTFSMVSAAMLEKKRRDSSVLDGRI-------LSIFWITPQFLIFGIS 479
Query: 477 DLFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTP-WL 535
++FT G++EFF+ + M G+YFS+VLVS+VN ITST + WL
Sbjct: 480 EMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWL 539
Query: 536 FGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 575
++LN L+ FYWL+ +L LNFL +LFW+ R+ S+
Sbjct: 540 GENDLNKDRLDLFYWLLAVLSLLNFLSYLFWS-RWNIKSS 578
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 195/569 (34%), Positives = 300/569 (52%)
Query: 11 EGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN 70
+G VD+ P L+ + G A F+L E E LAY A NL+ YL+ +H S+A
Sbjct: 27 DGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAAT 86
Query: 71 IVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130
VT + Y + I F+G+ LT+ A +LKP C+
Sbjct: 87 NVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG 146
Query: 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190
+ C + M F GLY++ALG GGIK ++ GA+Q+D+T R ++++FFN
Sbjct: 147 D----FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFN 202
Query: 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSP 250
++ F ++ GAL++ + +VWI++N+GW GFGI T + L+I F G+P YR + P GSP
Sbjct: 203 WFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSP 262
Query: 251 LTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIK 310
+T I +V+ A+ + SS V E T E++D+ NS + + T+D +
Sbjct: 263 ITRISQVVVASF------RKSSVKVPE---DATLLYETQDK-NSAIAGSRKIEH-TDDCQ 311
Query: 311 FLNRAL------RNNPAYPIVQ--CTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFS 362
+L++A + Y CT FPI+ S I+ + AQ+ST
Sbjct: 312 YLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMF 371
Query: 363 VQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI 422
VQQ MN K+GS ++PPA+L F ++I P+Y+ I+P ARK T + G T +QR+
Sbjct: 372 VQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRM 431
Query: 423 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLA 482
G GL +S++ MA AA+VEI R +A + GLV S P+PI+ LW QY LG+A++F
Sbjct: 432 GIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFI 491
Query: 483 GMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 542
G +EFF+ +P +MR +G Y S++++++V T+ W+ NLN
Sbjct: 492 GQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWI-SDNLNS 550
Query: 543 YHLERFYWLMCILGGLNFLHFLFWAARYK 571
HL+ F+WL+ L +N + F AARYK
Sbjct: 551 GHLDYFFWLLAGLSLVNMAVYFFSAARYK 579
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 195/575 (33%), Positives = 295/575 (51%)
Query: 9 TWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSS 68
T +G VD PA + + G A F+L E E LAY +NLV YL ++ +++
Sbjct: 8 TQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATA 67
Query: 69 ANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128
AN VTN+ Y I G+ LLT+ A LKP C
Sbjct: 68 ANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNC 127
Query: 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188
+ +C + AV F LY++ALG GGIK ++ GA+Q+DE + + ++S+F
Sbjct: 128 NAD----TCHPNSSQTAVF-FVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSF 182
Query: 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG 248
FN++ F ++ GALIA T +VWI+ N GW WGFG+ T +++++ F GS FYR + P G
Sbjct: 183 FNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGG 242
Query: 249 SPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQK--PT 306
SPLT IF+V+ AA F K V + E+ D+ SN+K S+K T
Sbjct: 243 SPLTRIFQVIVAA-FRKISVK--------VPEDKSLLFETADD-ESNIKG---SRKLVHT 289
Query: 307 EDIKFLNRA--------LRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQL 358
+++KF ++A +++ P C+ P++ + I+ +Q+
Sbjct: 290 DNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQM 349
Query: 359 STFSVQQAATMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGIT 417
ST V Q TM+ +G + ++P ASL +F + +L PVY+ IIP ARK T+ E G T
Sbjct: 350 STMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFT 409
Query: 418 HLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSAD 477
LQR+G GL++SI AM A ++E+ R + + + ++ W QYL +G A+
Sbjct: 410 QLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ-IHMSIFWQIPQYLLIGCAE 468
Query: 478 LFTLAGMMEFFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFG 537
+FT G +EFF+ AP +MR +G Y STVLV++V IT W+
Sbjct: 469 VFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWI-P 527
Query: 538 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572
NLN HL+ F++L+ L LNFL +L+ + RYKY
Sbjct: 528 DNLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKY 562
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 194/559 (34%), Positives = 294/559 (52%)
Query: 14 VDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVT 73
VD++ +PA + + GG + A +L +EV+E L+ + A NLV YL + MH S+SANIVT
Sbjct: 13 VDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIVT 72
Query: 74 NFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDG 133
+FM ++ I + I+ +G L V L+PPTC G
Sbjct: 73 DFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTC--HHG 130
Query: 134 IASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 193
A C + +L+ LY++ALG GG+K S++ G++Q+D+ + + FFN +
Sbjct: 131 EA-CIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFF 189
Query: 194 FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTT 253
F +S G L+AVT +V+++D G W +GI T ++ ++I IFL G+ YR K GSP+
Sbjct: 190 FFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQ 249
Query: 254 IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSN-ESRDEGNSNVKEKVPSQKPTEDIKFL 312
IF+V+ AA F K + + V +P E D+ + K + ++ E L
Sbjct: 250 IFQVIAAA-FRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFEQT--L 306
Query: 313 NRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAATMNTK 372
+ NP + + T PI+ +TI+ AQ+ TFSV+QA+TM
Sbjct: 307 DGVAIPNP-WKLSSVTKVEEVKMMVRL--LPIWATTIIFWTTYAQMITFSVEQASTMRRN 363
Query: 373 LGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVA 432
+GS K+P SL VF V ILI VY+ I+PF +K K + G + LQRI GL+LS
Sbjct: 364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKK-WKGKPGFSSLQRIAIGLVLSTAG 422
Query: 433 MAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA 492
MA AALVE KR VA +S S + LPI+ + Q+ +G+ + F G ++FF T +
Sbjct: 423 MAAAALVEQKRLSVAKSS----SQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQS 478
Query: 493 PLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLM 552
P M+ +G++ S+ LVSIV +TST WL N+NH L+ FYWL+
Sbjct: 479 PKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWL-ADNINHGRLDYFYWLL 537
Query: 553 CILGGLNFLHFLFWAARYK 571
IL G+NF+ ++ A +K
Sbjct: 538 VILSGINFVVYIICALWFK 556
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
Identities = 185/569 (32%), Positives = 288/569 (50%)
Query: 9 TWEGYVDWRNKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSS 68
T +G +D KPA + + G A F+L E E LAY ++NL+ YL K M+ S+
Sbjct: 9 TKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSA 68
Query: 69 ANIVTNFMXXXXXXXXXXXXXXXXXXXXYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128
+ V+N+ Y I G+ LLT+ A L P TC
Sbjct: 69 SKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP-TC 127
Query: 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188
E +C G A+ F LY++ALG GGIK ++ GA+Q+D+T + ++ +S+F
Sbjct: 128 SGE----TCHATAGQTAIT-FIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSF 182
Query: 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG 248
FN++ F ++ GA+IA + +VWI+ N GW WG G+ T + +++ F GS FYR + P G
Sbjct: 183 FNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGG 242
Query: 249 SPLTTIFKVLTAAIFNT-CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTE 307
SPLT + +V+ A+ + K + + E + + SR ++ + K
Sbjct: 243 SPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFF--DKAAV 300
Query: 308 DIKFLNRALRNNPAYPIVQCTXXXXXXXXXXXXXFPIFMSTIMLNCCLAQLSTFSVQQAA 367
+ + N+ + ++ + CT PI+ + I+ +Q+ T V Q
Sbjct: 301 ETESDNKGAAKSSSWKL--CTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGN 358
Query: 368 TMNTKLG-SLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGL 426
T++ +G + K+P ASL +F + +L APVY+ +I+PFARK T E G T LQRIG GL
Sbjct: 359 TLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGL 418
Query: 427 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 486
++SI +M A ++E+ R L N E +P+T W QY +G A++FT G +E
Sbjct: 419 VISIFSMVSAGILEVARLNYVQTHNLYNE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQLE 477
Query: 487 FFFTDAPLSMRXXXXXXXXXXXXMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 546
FF+ AP +MR G Y ST LV++V +T + W+ NLN+ HL+
Sbjct: 478 FFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWI-AKNLNNGHLD 536
Query: 547 RFYWLMCILGGLNFLHFLFWAARYKYSST 575
F+WL+ L LNFL +L+ A Y Y T
Sbjct: 537 YFFWLLAGLSFLNFLVYLWIAKWYTYKKT 565
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H157 | PTR19_ARATH | No assigned EC number | 0.6781 | 0.9826 | 0.9692 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 577 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-79 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 1e-25 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-21 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 2e-79
Identities = 117/413 (28%), Positives = 192/413 (46%), Gaps = 44/413 (10%)
Query: 97 YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVA 156
++ ++ + I +G +LLT+ A SL P + + + GLY++A
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPV-----------------QVALFYIGLYLIA 43
Query: 157 LGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 216
LG GGIK +++ GA+Q+DET +R FF+++ F ++ G+LIA +++ N G+
Sbjct: 44 LGTGGIKPNVSAFGADQFDET---QDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGY 100
Query: 217 QWGFGISTATILLSIPIFLLGSPFYRNKIP-TGSPLTTIFKVLTAAIFNTCKSKNSSNAV 275
GFG+ +LL++ +FLLGS Y+ K P GSP T + A K + ++
Sbjct: 101 PLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSH 160
Query: 276 TEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEV 335
+ + S + + KF V +
Sbjct: 161 WLYWALEKYNKRS---ISQTKVHTRVAVIFIPLPKFWALF-----------DQQGSVWLL 206
Query: 336 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL-KVPPASLPVFPVIFILIL 394
+ ++ + PI+ I+ + QL+T V+Q TM+ + L ++PPAS F + +LIL
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLIL 266
Query: 395 APVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVN 454
P+ + ++ P R + G+T QR G G+ + IVA +AA+VE KR R A GL +
Sbjct: 267 LPILDFLVYPLLRL----KRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTS 322
Query: 455 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS 507
+P+ LW + G LAG +EF P SM SL T LS A+
Sbjct: 323 PGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 84/397 (21%), Positives = 160/397 (40%), Gaps = 71/397 (17%)
Query: 53 LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112
LVLYL F+ ++ ++ NI F +L L G +AD++ ++ + + + +G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAE 172
L ++ A P L GL ++ALG GGIK ++ G +
Sbjct: 70 LASLGAVPSLGHPLHDALS-----------------LVGLALIALGTGGIKPCVSAFGGD 112
Query: 173 QYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF-------VVWIEDNKGWQWGFGISTA 225
Q++E R FF+++ F ++ G+L + V + FG+
Sbjct: 113 QFEERQL---SLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGI 169
Query: 226 TILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCS 285
+ L++ +F +GS Y+ K P G+ + KV+ +F K
Sbjct: 170 LMTLALIVFSMGSKMYKKKPPVGN---IVSKVMKCIVFALKKR----------------- 209
Query: 286 NESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIF 345
+ +ED L+ P Y I + + K ++++ +F
Sbjct: 210 ----------------FRTRSEDWPRLHWLDWAAPKYLI-----RMIRSTKRLLRVLFLF 248
Query: 346 MSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPF 405
+ M Q + QA M+ +G + P + + +LIL P++++V+
Sbjct: 249 IPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVV--- 305
Query: 406 ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIK 442
+ K T L+++ G++L+ +A AVAAL++ K
Sbjct: 306 YPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 4e-21
Identities = 91/500 (18%), Positives = 177/500 (35%), Gaps = 99/500 (19%)
Query: 32 ACFVL-AVEVLENLAYLANASNLVLYL----SKFMHFSPSSSANIVTNFMGTAFLLALFG 86
+++ VE+ E +Y + L+LYL + F + + + + + +L + G
Sbjct: 22 GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIG 81
Query: 87 GFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 146
G+LAD T R V+ A + +G L+L +
Sbjct: 82 GWLADRVLGTRRTIVLGAILMAIGHLVLAI-----------------------SSVSGPG 118
Query: 147 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 206
L+ GL ++ +G G K +++ E Y + +R F + ++ G+LIA
Sbjct: 119 GLYIGLALIIVGTGLFKPNISSLLGELYPK----DDPRRDGGFTLFYMGINIGSLIAPII 174
Query: 207 VVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFY--------------RNKIPTGSPLT 252
+ N GW GFG++ +++ + IFLLG +P
Sbjct: 175 TGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL--GG 232
Query: 253 TIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFL 312
+ +L A + S + V S I +
Sbjct: 233 LVVMILAALLTLLLNQNTFSGVLL-----------------------VISILIA--IIYF 267
Query: 313 NRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLST-FSVQQAATMNT 371
A R+ K +E + ++ P+F+ ++ Q+ + ++ +N
Sbjct: 268 AEAFRSP----------KVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317
Query: 372 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIV 431
++ +VPPA FI++ +P+ + R + I GLIL+ +
Sbjct: 318 QIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIK----FALGLILAGL 373
Query: 432 AMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 491
+ L I SGLV + W+ L Y+ +LF +
Sbjct: 374 GFLILLLAGIWF---GGPSGLV--------SVWWLVLSYVLQSFGELFISPVGLSMVTKL 422
Query: 492 APLSMRSLATSLSWASLAMG 511
AP +++S ++ + ++A G
Sbjct: 423 APPALKSFIMAMWFLTVAAG 442
|
Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 30/225 (13%)
Query: 38 VEVLENLAYLANASNLVLYL--SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT 95
VE+ E +Y L +YL + FS + I + +LL G + D +
Sbjct: 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG 77
Query: 96 TYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIV 155
T + V+ + +G +L + + ++F GL +
Sbjct: 78 TKKTMVLGGIVLMLGHFMLAMSIYPD-------------------------LIFYGLGTI 112
Query: 156 ALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 215
A+G G K + + + Y+ + +R F + ++ G+ I+ I +N G
Sbjct: 113 AVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169
Query: 216 WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA 260
+ GF ++ +++ + F G R+ PL+ K
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK 214
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 39/186 (20%), Positives = 67/186 (36%), Gaps = 32/186 (17%)
Query: 51 SNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110
S + L++ + S S + IV+ F L +L G+L+D F R ++ + F
Sbjct: 19 SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG--RRRVLLLGLLLFAL 76
Query: 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHG 170
LL A + +L G +++ LG G + + A
Sbjct: 77 GSLLLAFASS------------------------LWLLLVGRFLLGLGGGALYPAAAALI 112
Query: 171 AEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS 230
AE + K+R + GAL+ + ++ GW+W F I LL
Sbjct: 113 AEWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166
Query: 231 IPIFLL 236
+ L
Sbjct: 167 ALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.9 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.85 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.85 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.84 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.83 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.82 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.82 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.81 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.75 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.73 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.71 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.68 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.68 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.68 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.68 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.67 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.67 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.67 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.65 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.64 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.64 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.64 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.63 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.59 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.56 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.51 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.48 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.47 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.45 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.44 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.43 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.43 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.35 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.35 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.34 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.34 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.31 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.26 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.26 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.25 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.25 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.25 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.24 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.24 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.24 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.21 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.21 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.21 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.2 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.2 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.19 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.19 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.18 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.17 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.17 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.16 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.14 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.14 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.13 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.13 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.11 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.11 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.11 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.1 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.09 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.09 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.09 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.09 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.08 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.08 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.05 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.05 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.04 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.03 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.03 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.03 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.02 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.01 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.01 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.98 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.97 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.92 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.89 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.85 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.83 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.82 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.81 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.8 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.71 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.7 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.65 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.63 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.62 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.59 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.58 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.57 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.54 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.42 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.42 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.38 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.35 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.34 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.34 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.31 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.29 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.27 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.24 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.24 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.19 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.14 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.11 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.09 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.09 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.95 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.94 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.93 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.87 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.82 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.8 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.72 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.71 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.68 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.64 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.53 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.29 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.28 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.27 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.16 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.96 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.91 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.89 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.87 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.84 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.82 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.85 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.63 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.47 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.24 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.97 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.9 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.6 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 93.69 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.96 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 91.17 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 90.89 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.42 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 88.24 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.46 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 86.18 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 85.46 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.04 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.45 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.29 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 83.2 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 82.19 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=418.46 Aligned_cols=540 Identities=44% Similarity=0.687 Sum_probs=480.3
Q ss_pred ccccccCCccccc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHH
Q 008106 12 GYVDWRNKPALRG---RHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGF 88 (577)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~ 88 (577)
+..+++..+..+. .++.|++...++..+.++++++|++..++..|+++.+|.+...+.-.+..+.......++.+++
T Consensus 16 ~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~ 95 (571)
T KOG1237|consen 16 TSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAF 95 (571)
T ss_pred ceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555554 6778999999999999999999999999999999999999988999999999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCC-ccCCCCCchHHHHHHHHHHHHhhcccccccch
Q 008106 89 LADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA-SCREDEGGKAVMLFAGLYIVALGVGGIKGSLA 167 (577)
Q Consensus 89 laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 167 (577)
++|.|+||.+++.++.+++.+|.+++.++...+.+.++.| .++... .|++.+......++.++.+.++|.|+..|+..
T Consensus 96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~ 174 (571)
T KOG1237|consen 96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLL 174 (571)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcch
Confidence 9999999999999999999999999999998898888877 333333 68888888999999999999999999999999
Q ss_pred hhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCC
Q 008106 168 PHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPT 247 (577)
Q Consensus 168 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (577)
++.+|++++..+.++..+...|+|+++..++|..++-.+..++.++.||.+.|.++.+.+++++++++...+.++++.|.
T Consensus 175 ~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~ 254 (571)
T KOG1237|consen 175 AFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPR 254 (571)
T ss_pred hhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCC
Confidence 99999999777777878889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCC-------
Q 008106 248 GSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNP------- 320 (577)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 320 (577)
++|+..+.+++..+.++++.+.+.+++ +. +. ..++....++++..+++|++.+...
T Consensus 255 gsp~t~i~~Vlvaa~~k~~~~~~~~~~------------~~---~~--~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~ 317 (571)
T KOG1237|consen 255 GSPKTRIGQVLVAAAFKRKAVVSLDPE------------EL---YY--DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGL 317 (571)
T ss_pred CCchhHHHHHHHHHHHHHhccCCCcch------------hc---cc--cccccccccCCcccchhhHhhccCCccccccc
Confidence 999999999999999999887765533 11 00 1122223333566778888776522
Q ss_pred -CCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCc-cccCCCCCCCcChhhhHHHhhhh
Q 008106 321 -AYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVY 398 (577)
Q Consensus 321 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~ 398 (577)
..+|+.|..+++|+.|.+++.++.+.+.+.+++.+.|+.+.++.|...|++++++ +.+|++.++.+..+...+..++.
T Consensus 318 ~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iply 397 (571)
T KOG1237|consen 318 DANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLY 397 (571)
T ss_pred ccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhc
Confidence 2579999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred hhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHH
Q 008106 399 NHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADL 478 (577)
Q Consensus 399 ~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 478 (577)
+++.+|+.||.++++.+.+.+.|+.+|+.+..+++...+.++.+|.+.... ..++..+++.+|.+++|+++|++|+
T Consensus 398 dr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Ev 473 (571)
T KOG1237|consen 398 DRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEV 473 (571)
T ss_pred ceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHH
Confidence 999999999998876678999999999999999999999999988765543 2233467999999999999999999
Q ss_pred HHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcc-CCCCCcchhHHHHHHHHHHHH
Q 008106 479 FTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLF-GSNLNHYHLERFYWLMCILGG 557 (577)
Q Consensus 479 ~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~l~~ 557 (577)
+......++.++++|++||+.+++++.+..++|+.++.+++..+...+.+ +.+|++ + ++|..+++++||+++.+..
T Consensus 474 f~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~-~ln~~~ld~Fy~lla~~~~ 550 (571)
T KOG1237|consen 474 FTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFA-NLNKGRLDYFYWLLAVYSA 550 (571)
T ss_pred HHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChh-HhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999876543 468999 7 9999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCC
Q 008106 558 LNFLHFLFWAARYKYSSTG 576 (577)
Q Consensus 558 l~~v~~~~~~~~~~~~~~~ 576 (577)
++...++.+.++|++++.+
T Consensus 551 ~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 551 VNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred hhhhheEEEEEeeeecccc
Confidence 9999999999999887654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=354.08 Aligned_cols=467 Identities=19% Similarity=0.313 Sum_probs=363.3
Q ss_pred cccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCchhhhhHHHHHHHHHHHHHhHHHHhhhcccch
Q 008106 21 ALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMH----FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT 96 (577)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr 96 (577)
..+...+|||.++.++.+|++||++||++...+..|++.+++ ++++++..+.++|....++.++++||+|||++|+
T Consensus 12 ~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~ 91 (498)
T COG3104 12 LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT 91 (498)
T ss_pred cccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 344456689999999999999999999999999999999888 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCC
Q 008106 97 YRIYVISAAIEFMGLLLLTVQA-HTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD 175 (577)
Q Consensus 97 r~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (577)
|+++.+|.+++++|.++++.+. . ....++++..++++|.|..+++..++++|++|
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~~~------------------------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISSVS------------------------GPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccccc------------------------cccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 9999999999999999998763 1 45679999999999999999999999999999
Q ss_pred cccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCC--CCchh-
Q 008106 176 ETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPT--GSPLT- 252 (577)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 252 (577)
+++++ |..+++++|++.|+|+.++|.+++++.+++||+..|.++++.+.++++.+++.+++....... ..+..
T Consensus 148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~ 223 (498)
T COG3104 148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF 223 (498)
T ss_pred CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence 99863 899999999999999999999999999999999999999999999999999988776654322 11111
Q ss_pred -H----HHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCcccc
Q 008106 253 -T----IFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQC 327 (577)
Q Consensus 253 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (577)
. ...++......-. ..++ ..+... .........-...+..+. ..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~---------~~~l-------~~~~~~-----~~~~~~~i~~~~~~~~~~------~~~--- 273 (498)
T COG3104 224 NFLLPVLGGLVVMILAALL---------TLLL-------NQNTFS-----GVLLVISILIAIIYFAEA------FRS--- 273 (498)
T ss_pred hhhhhhHHHHHHHHHHHHH---------HHHH-------HHHHHH-----HHHHHHHHHHHHHHHHHH------hcc---
Confidence 1 1111111100000 0000 000000 000000000000000000 011
Q ss_pred chhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhh-hhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcc
Q 008106 328 TVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFA 406 (577)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 406 (577)
.+++ +||+|+...++++.+.++||+.+.|.++.+..+. .+.+++..|++++++++|++|++.++++.|+.++++.++.
T Consensus 274 ~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~ 352 (498)
T COG3104 274 PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLG 352 (498)
T ss_pred CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhh
Confidence 2333 7789999999999999999999999999877766 4566675569999999999999999999999999999988
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHH
Q 008106 407 RKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMME 486 (577)
Q Consensus 407 ~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~ 486 (577)
++. ++ ++.+.++..|+++++.+.+++.....+. + ++....|.+|+++.|+++++||.+.+|...+
T Consensus 353 ~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~---~--------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs 417 (498)
T COG3104 353 RGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWF---G--------GPSGLVSVWWLVLSYVLQSFGELFISPVGLS 417 (498)
T ss_pred cCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh---c--------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 774 33 7888999999999999998887753221 1 1123489999999999999999999999999
Q ss_pred HhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008106 487 FFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 566 (577)
Q Consensus 487 ~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~ 566 (577)
++++.+|+++.+..+|++.+.+..|+.++..+.+.... + ++ ..+......+|+.++..+++..++....
T Consensus 418 ~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~-----~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 418 MVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T-----DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c-----ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888663210 0 00 1112344568899999998888888887
Q ss_pred hhhccc
Q 008106 567 AARYKY 572 (577)
Q Consensus 567 ~~~~~~ 572 (577)
.++.++
T Consensus 487 ~~~~~r 492 (498)
T COG3104 487 SPKLNR 492 (498)
T ss_pred hHHHHH
Confidence 777654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=331.77 Aligned_cols=461 Identities=13% Similarity=0.200 Sum_probs=335.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
++|||.++.++++++++++++|++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||++.++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
++.+++++++++.+ ....++++|.++++|.|..+|+..++++|++|++++ +|
T Consensus 90 ~~~~g~~~~~~~~~------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~ 141 (489)
T PRK10207 90 VLAIGYFMTGMSLL------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RL 141 (489)
T ss_pred HHHHHHHHHHHhcc------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hh
Confidence 99999999988642 123466889999999999999999999999998751 26
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchhHHHHHH-----
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK--IPTGSPLTTIFKVL----- 258 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----- 258 (577)
++.++++|++.|+|+.+||.+++++.++.|||+.|++..+..+++++.+...++..++. ++++++.+.....+
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~ 221 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGS 221 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHH
Confidence 88999999999999999999999999999999999998776666666655555444332 22222221100000
Q ss_pred ---HHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHH
Q 008106 259 ---TAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEV 335 (577)
Q Consensus 259 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (577)
....... . +. . ...... ............-+++.+.++ .++
T Consensus 222 ~~~~~~~~~~-~-------------------~~------------~--~~~~~~-~~~~~~i~~~~f~~~~~~~~~-~~r 265 (489)
T PRK10207 222 VVMIFVCAWL-M-------------------HN------------V--EVANLV-LIVLSIVVTIIFFREAFKLDK-TGR 265 (489)
T ss_pred HHHHHHHHHH-H-------------------hh------------h--hHHHHH-HHHHHHHHHHHHHHHHhcCCH-HHH
Confidence 0000000 0 00 0 000000 000000000000000001112 334
Q ss_pred HHHHhHHHHHHHhHHHHhhhhccchhHHhhhh-hccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccC
Q 008106 336 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 414 (577)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~ 414 (577)
++.+....++...+++|..+.|..+.+..+.. +++....++.+++++++++|++.+++..|+.+++.+++.+|. .
T Consensus 266 ~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~----~ 341 (489)
T PRK10207 266 NKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKG----K 341 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCC----C
Confidence 55555666677788899999998777665554 466666678888899999999999999999988877766552 2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCc
Q 008106 415 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL 494 (577)
Q Consensus 415 ~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~ 494 (577)
++++..++..|+++.+++++.++........ .....+.+|+++.+++.++||++.+|+.++++++.+|+
T Consensus 342 ~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~ 410 (489)
T PRK10207 342 DLSMPMKFTLGMFLCSLGFLTAAAAGMWFAD-----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ 410 (489)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH
Confidence 2688889999999999888765443211000 01135788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 495 SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 495 ~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
+++|.++|++++.+++|+.++..+...... .. +..++.. ..+.+.++|..+++.+++..++++.+.+++++
T Consensus 411 ~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~-~~~~~~~-----~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~ 481 (489)
T PRK10207 411 HLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD-NITDPLE-----TLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR 481 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccchh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765531 00 0001111 11346778889999888888888887777655
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=322.76 Aligned_cols=455 Identities=15% Similarity=0.188 Sum_probs=328.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
|||.++.++..++++++.+|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||.+.++.++.
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999669999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
+++.++++...+ ....++++..+.++|.|...++.+++++|++|++++ +|.+
T Consensus 87 ~lg~lll~~~~~------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~s 138 (493)
T PRK15462 87 AIGHVVLGASEI------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDG 138 (493)
T ss_pred HHHHHHHHHhhc------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccc
Confidence 999887765321 122345555667788888889999999999997631 2899
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCC-CCCchh--HHHHHH-----H
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIP-TGSPLT--TIFKVL-----T 259 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~-----~ 259 (577)
+++++|...|+|+.++|.+++++.+.+||++.|.+.++.++++++.+++.++.+.+..+ ++++.. ...... .
T Consensus 139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
T PRK15462 139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV 218 (493)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777777777665554433211 111111 100000 0
Q ss_pred H-----HHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhH
Q 008106 260 A-----AIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEE 334 (577)
Q Consensus 260 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (577)
. .+........... .+. .....-..-++-. .. + .....+|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~---~~~----------------------~~~~~~~~~~~~~-~~-------~--~~~~~~e 263 (493)
T PRK15462 219 LLVATPALITVLFWKEWSV---YAL----------------------IVATIIGLGVLAK-IY-------R--KAENQKQ 263 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHH----------------------HHHHHHHHHHHHH-HH-------H--hcCCHHH
Confidence 0 0000000000000 000 0000000000000 00 0 0112366
Q ss_pred HHHHHhHHHHHHHhHHHHhhhhccchhHHhhh-hhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhccccccccc
Q 008106 335 VKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTE 413 (577)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~ 413 (577)
|+|+...+.++...++||..+.|.++.+.... .++|++++++.+|++++|++|++.+++++|+...++.++.+| +|
T Consensus 264 r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~- 340 (493)
T PRK15462 264 RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NR- 340 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CC-
Confidence 88888899999999999999999999766554 678889999999999999999999999999999987666543 12
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCC
Q 008106 414 MGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP 493 (577)
Q Consensus 414 ~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P 493 (577)
+++...|+.+|+++++++.+++....... ++...++.+|++..++++++||.+.+|...+++.+.+|
T Consensus 341 -~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~------------~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP 407 (493)
T PRK15462 341 -TVRIWGKFALGLGLMSAGFCILTLSARWS------------AMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI 407 (493)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHhhc------------CCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh
Confidence 37888999999999999988876643211 01123789999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHH
Q 008106 494 LSMRSLATSLSWASL-AMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLN-FLHFLFW 566 (577)
Q Consensus 494 ~~~rg~~~g~~~~~~-~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~-~v~~~~~ 566 (577)
++.||+.||++.+.. .+|+.+++.+.......+. ++-... ..+...+..+|..++.+.++. .++.+.+
T Consensus 408 ~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~----~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 477 (493)
T PRK15462 408 PGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF----DASGAI-NYSINAYIEVFDQITWGALACVGVVLMIW 477 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----Cccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998854 6888888877666532100 000000 001134566787777777666 4444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=322.10 Aligned_cols=454 Identities=16% Similarity=0.214 Sum_probs=334.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF--MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVIS 103 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~ 103 (577)
.+++|.++.+.+.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45788899999999999999999999999999987 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh
Q 008106 104 AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK 183 (577)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (577)
.++.+++.+++++++ +...++++|++.|+|.|...++..++++|++|++++ .
T Consensus 86 ~~~~~~g~~~~~~~~-------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~ 137 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---P 137 (475)
T ss_pred HHHHHHHHHHHHhcc-------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---c
Confidence 999999999888764 455678899999999999999999999999987642 2
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhH----HHH---
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTT----IFK--- 256 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 256 (577)
+|+++++++|++.|+|+++||.+++++.+++||++.|.+.++..+++++.+.+.++..++.++++++.+. ..+
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLL 217 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHH
Confidence 3888999999999999999999999999999999999998877666666666655544333222221110 000
Q ss_pred ----HHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhh
Q 008106 257 ----VLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEV 332 (577)
Q Consensus 257 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (577)
........... .. ... .... .........+....... ..+ ..++
T Consensus 218 ~~~~~~~~~~~~~~~-~~----------------~~~------~~~~--~~~~~~~~~~~~~~~~~--~~~----~~~~- 265 (475)
T TIGR00924 218 ALLAALALVFFCAWL-MH----------------HVV------IANI--LLMTVTLAVIIFFFRLA--FKP----RLDA- 265 (475)
T ss_pred HHHHHHHHHHHHHHH-Hh----------------ccH------HHHH--HHHHHHHHHHHHHHHHH--Hhc----cCCH-
Confidence 00000000000 00 000 0000 00000000000000000 000 0111
Q ss_pred hHHHHHHhHHHHHHHhHHHHhhhhccchhHHhh-hhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhccccccc
Q 008106 333 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQ-AATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTK 411 (577)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~ 411 (577)
.++++....+.++.+..++|+.+.|..+.+..+ ...++.+++++++++++++++|++.+++..++.+++..++.||. +
T Consensus 266 ~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~-~ 344 (475)
T TIGR00924 266 VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG-K 344 (475)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 233444456778888889999999999876543 34577777788999999999999999999999887665555541 1
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhcc
Q 008106 412 TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 491 (577)
Q Consensus 412 ~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~ 491 (577)
+++...|+..|+++.+++++..+...... ++..+.+++|+++++++.++||.+..|..++++++.
T Consensus 345 ---~~~~~~k~~~G~~l~~~~~~~~~~~~~~~------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~ 409 (475)
T TIGR00924 345 ---DPTTPLKFTLGMLFCGASFLTFAASIWFA------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKI 409 (475)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHhhc------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 25667789999999999988877642110 112347999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 492 APLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 492 ~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
+|++.||+++|++.+...+|+.+++.+...... ..++..+|...++++++..+++++..++.+
T Consensus 410 aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 410 APQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV-----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776531 123445777888888877777777777665
Q ss_pred c
Q 008106 572 Y 572 (577)
Q Consensus 572 ~ 572 (577)
|
T Consensus 473 k 473 (475)
T TIGR00924 473 R 473 (475)
T ss_pred h
Confidence 3
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=311.91 Aligned_cols=456 Identities=15% Similarity=0.235 Sum_probs=326.1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
.+++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.......++++|+++||++|||+.+.++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999988888877777778999999994499999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
+.+++..+++++++ ....++++|+++|+|.|...++..++++|++|+++. +|
T Consensus 97 ~~~ig~~l~~~~~~------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~ 148 (500)
T PRK09584 97 VLAIGYALVAWSGH------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RL 148 (500)
T ss_pred HHHHHHHHHHHhcc------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hh
Confidence 99999988887531 345577889999999999999999999999986541 25
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchhHH--H----HH
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK--IPTGSPLTTI--F----KV 257 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~----~~ 257 (577)
.+++++++++.|+|+.+||.+++++.+++||++.|.+.++..+++++.+.+.++..+++ ++++++.+.. . ..
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGV 228 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHH
Confidence 66889999999999999999999999999999999998876666655554444333322 2222222111 0 00
Q ss_pred HHHHH-HhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCcc-ccchhhhhHH
Q 008106 258 LTAAI-FNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV-QCTVKEVEEV 335 (577)
Q Consensus 258 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 335 (577)
..... .......++ .....-........ ...++ ....++ .++
T Consensus 229 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~ 272 (500)
T PRK09584 229 VALIAIATWLLHNQE---------------------------------IARMALGVVALGIV--VIFGKEAFAMKG-AAR 272 (500)
T ss_pred HHHHHHHHHHHhcch---------------------------------HHHHHHHHHHHHHH--HHHHHHHhhcCH-HHH
Confidence 00000 000000000 00000000000000 00000 001122 345
Q ss_pred HHHHhHHHHHHHhHHHHhhhhccchhHHhhhh-hccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccC
Q 008106 336 KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 414 (577)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~ 414 (577)
++.+....++...+++|+.+.|.++.+..+.. .+++++.++.+++++++++|++.+++..++.+++..++.+|
T Consensus 273 ~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------ 346 (500)
T PRK09584 273 RKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------ 346 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------
Confidence 55555666778888999999999998877653 45666777888999999999999999999998775444433
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCc
Q 008106 415 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL 494 (577)
Q Consensus 415 ~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~ 494 (577)
.+..+++.+|+++.+++++.+.....+. ++...++.+|+++.+++.++||++.+|...+++.+.+|+
T Consensus 347 -~~~~~~~~~G~~l~~l~f~~l~~~~~~~------------~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 347 -LPMPHKFAIGMVLCSGAFLVLPLGAKFA------------NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 4567889999999999998877643211 011246788999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 495 SMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 495 ~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
++||+++|++.+...+|+.++..+...... .. ...++.. ...++..+|..+++++++..++.+...++.+
T Consensus 414 ~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~-~~~~~~~-----~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 414 RLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD-NVTDPLM-----SLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccchh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888754321 00 0001110 1134677888888888777766666666554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-27 Score=262.05 Aligned_cols=335 Identities=24% Similarity=0.494 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008106 44 LAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSL 123 (577)
Q Consensus 44 ~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~ 123 (577)
++||++...+.+|+++.+|++++++..+...+.....+.++++|+++|+++||++++.++.++..+|..++++++..+.
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~- 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS- 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999887542110
Q ss_pred CCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHH
Q 008106 124 KPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIA 203 (577)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 203 (577)
.........++++.+.++|.|+.+|+..+..+|++++++ +.+|.++++++|+++|+|+.++
T Consensus 80 ----------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis 140 (654)
T TIGR00926 80 ----------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLIS 140 (654)
T ss_pred ----------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 001134557788899999999999999999999998654 3348999999999999999999
Q ss_pred HHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCccc
Q 008106 204 VTFVVWIEDN-------KGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVT 276 (577)
Q Consensus 204 p~~~~~l~~~-------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (577)
+++.+++.+. .||..+|.++++.++++++++...+++++++++.+++.....+++..+.++++.....
T Consensus 141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~----- 215 (654)
T TIGR00926 141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE----- 215 (654)
T ss_pred HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc-----
Confidence 9999999744 3699999999999999999988888888777777776666666666666543221100
Q ss_pred ccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhh
Q 008106 277 EVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLA 356 (577)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (577)
....+|++.+..+ ..+++++++|++++++.++...+++|..+.
T Consensus 216 -----------------------------~~~~~~ld~a~~~--------~~~~~V~evkrll~il~l~i~~~ifw~~~~ 258 (654)
T TIGR00926 216 -----------------------------HWPLHWLDYAKDK--------HDIRMIRSTKRLLRVLVLFIPLPMFWALFD 258 (654)
T ss_pred -----------------------------ccchhHHHHhccc--------cccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112344443321 123456788999999999999999999999
Q ss_pred ccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHH
Q 008106 357 QLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVA 436 (577)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~ 436 (577)
|..+.+..+...++.+++++.+++..++.++++.++++.++.++.++|..+|...+ +++..|+.+|++++++++++.
T Consensus 259 Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 259 QQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred cchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888999999999999999999999998888888775333 688999999999999999888
Q ss_pred HHHHHHH
Q 008106 437 ALVEIKR 443 (577)
Q Consensus 437 ~~~~~~~ 443 (577)
...+.++
T Consensus 336 ~~ve~~~ 342 (654)
T TIGR00926 336 ALVQLKV 342 (654)
T ss_pred HHHHHHH
Confidence 7776554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=226.10 Aligned_cols=384 Identities=12% Similarity=0.042 Sum_probs=254.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
+|.+..+.+..+...++.....+.+|.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||++.++.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 35688888899999999888889999999999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++...+.++..... ....+...+++.|+++|++.+...+...+.+.|.+|+++ |++.
T Consensus 93 ~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 149 (399)
T PRK05122 93 LSGLLYLLAGLLAA-----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRV 149 (399)
T ss_pred HHHHHHHHhhhhhc-----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccc
Confidence 87776655431100 000145678999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccC
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 268 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (577)
+++.....++|..+||.+++++.+..||+..+.+..+..++.+... ...+ +.++++++
T Consensus 150 ~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~------------------ 207 (399)
T PRK05122 150 ISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRP---AVPPVKGE------------------ 207 (399)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCC---CCCCCCcc------------------
Confidence 9999999999999999999999999999998887665544333221 1111 00000000
Q ss_pred CCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHH-HHHHH
Q 008106 269 KNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIF-PIFMS 347 (577)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 347 (577)
..++. +..|+.+... .....
T Consensus 208 ---------------------------------------~~~~~--------------------~~~~~~~~~~~~~~~~ 228 (399)
T PRK05122 208 ---------------------------------------RLPFR--------------------RVLGRVWPYGMGLALA 228 (399)
T ss_pred ---------------------------------------chhHH--------------------HHHHHHHHHHHHHHHH
Confidence 00000 0011111110 01111
Q ss_pred hHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHH
Q 008106 348 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLI 427 (577)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 427 (577)
...+. ...++...+.. +.. .. ..........++.+++.++.+++.|+..+ ++.+..+..
T Consensus 229 ~~~~~----~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~~ 287 (399)
T PRK05122 229 SIGFG----TIATFITLYYA--ARG---WD-GAALALTLFGVAFVGARLLFGNLINRLGG-----------LRVAIVSLL 287 (399)
T ss_pred HHHHH----HHHHHHHHHHH--Hcc---cc-cchHHHHHHHHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHH
Confidence 11111 11111111111 111 00 11111112233334444444444443322 233555556
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHH
Q 008106 428 LSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS 507 (577)
Q Consensus 428 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~ 507 (577)
+..++.+..... .+.+..++..++.|++.+...|.......+..|++.||++.|+.+..
T Consensus 288 ~~~~~~~~~~~~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 288 VEILGLLLLWLA---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666665554442 13445556678889998888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008106 508 LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576 (577)
Q Consensus 508 ~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~~~~ 576 (577)
..+|..+++.+.+.+.+. .+++..|+..++++++++++.++..++.++...|
T Consensus 347 ~~~g~~~~~~~~g~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T PRK05122 347 LDLSLGITGPLAGLVASW-----------------FGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------cCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 999999999888887631 2466778888888888877766665555544433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=225.20 Aligned_cols=376 Identities=11% Similarity=0.078 Sum_probs=244.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+|..++.+.+..++.....+...+.+ ..+.+++|.++.+.+++.+.+.++..+++++.|+++||+ ||||.+.++.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 34446666666666545545333334 456789999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
+++++++.+++ +.+.++++|+++|++.+...+...+++.|++|+++ |++
T Consensus 85 ~~~~~~~~~~~-------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 133 (390)
T PRK03545 85 IASHVLSALAW-------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQ 133 (390)
T ss_pred HHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhh
Confidence 99999998876 67889999999999999888899999999999988 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 267 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (577)
.++++..+.++|..++|.+++.+.+..|||+.|++.++..++.....+...|+.+++ ++++..+
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~-------------- 197 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS-------------- 197 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH--------------
Confidence 999999999999999999999999989999999988876655544433322221110 0000000
Q ss_pred CCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHH-HHHH
Q 008106 268 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIF-PIFM 346 (577)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (577)
.. +....+...... ..+.
T Consensus 198 -------------------------------------------~~------------------~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 198 -------------------------------------------LP------------------LLFRRPALVSLYLLTVV 216 (390)
T ss_pred -------------------------------------------HH------------------HHHhCcHHHHHHHHHHH
Confidence 00 000001111111 1111
Q ss_pred HhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHH
Q 008106 347 STIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGL 426 (577)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 426 (577)
.....+........++ ....+.+.. ..+.+.....+..+++..+.+++.|+..+ +++..+.
T Consensus 217 ~~~~~~~~~~~~~~~l-~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~------------~~~~~~~ 277 (390)
T PRK03545 217 VVTAHFTAYSYIEPFV-QQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPS------------GFLLIAI 277 (390)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccch------------hHHHHHH
Confidence 1111111111111111 110111111 11122222233334444444444332211 1244444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHH
Q 008106 427 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 506 (577)
Q Consensus 427 ~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~ 506 (577)
.+..++........ .+.+.+.+..++.|++.....+...+...+..| +.|+.++|+++.
T Consensus 278 ~~~~~~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 336 (390)
T PRK03545 278 ALLLVCLLLLLPAA--------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSG 336 (390)
T ss_pred HHHHHHHHHHHHHh--------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 44444443322211 234455566677888887777777888888877 578999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 507 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 507 ~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
...+|..+|+.+.+.+.+ ..+++..|+..+++.++++++++...++.
T Consensus 337 ~~~~g~~~G~~~~G~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSL-----------------HLGLSSIGYVGAALALAALVWSILIFRRF 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------ccChhHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999998873 13456688999999998888887776643
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=221.90 Aligned_cols=375 Identities=11% Similarity=0.031 Sum_probs=244.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+.++.+.++.++..+......+.+|.|+++++|+|..+.+++.+.+.+...+++++.|+++||+ ||||.+.++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 35677777888888888888888999999999999999999999999999999999999999997 99999999988877
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+........+. ....+.+.++++|+++|++.+...+...+.+.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a 149 (392)
T PRK12382 93 LAGLAYLLAAILPV-----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV 149 (392)
T ss_pred HHHHHHHhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence 66544322210000 001156789999999999999888888889999999888 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccC
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 268 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (577)
+++++.+.++|..++|.+++++.+.+||++.+.+..+..++.+.. . + +.++.+++++.
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~------------------ 207 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF--N-G-TVRKVPAHAGE------------------ 207 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH--H-H-hccCCCCCccc------------------
Confidence 999999999999999999999999899998776654443322221 1 1 11110000000
Q ss_pred CCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhH-HHHHHH
Q 008106 269 KNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKI-FPIFMS 347 (577)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 347 (577)
+ + +.. +..|..+.. ......
T Consensus 208 ---------------------------------~----~--~~~--------------------~~~~~~~~~~~~~~l~ 228 (392)
T PRK12382 208 ---------------------------------R----P--SLW--------------------SVVGLIWKPGLGLALQ 228 (392)
T ss_pred ---------------------------------C----c--hHH--------------------HHHHHHHHhHHHHHHH
Confidence 0 0 000 000111100 001111
Q ss_pred hHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHH
Q 008106 348 TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLI 427 (577)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 427 (577)
...+.... .....+.. +... . ..........+..+++.++.+++.|+..+| +.+..+..
T Consensus 229 ~~~~~~~~----~~~~~~~~--~~~~---~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~ 287 (392)
T PRK12382 229 GVGFAVIG----TFVSLYFA--SKGW---A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLL 287 (392)
T ss_pred HHHHhHHH----HHHHHHHH--hcCC---c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHH
Confidence 11111111 11111100 1110 0 011111112233344445555555444332 22445666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHH
Q 008106 428 LSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWAS 507 (577)
Q Consensus 428 l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~ 507 (577)
+..++.+..... .+.+...+..++.+++.+...|...+...+..|++.||++.|++++.
T Consensus 288 ~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (392)
T PRK12382 288 VETVGLLLLWLA---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAF 346 (392)
T ss_pred HHHHHHHHHHHc---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666665544432 13344556677888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 008106 508 LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 567 (577)
Q Consensus 508 ~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~ 567 (577)
..+|+.+++.+.+.+.+. .+++..|.+.+++.+++.++.+...
T Consensus 347 ~~~g~~ig~~~~g~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 347 QDIAYGVSGPLAGMLATS-----------------FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHH-----------------hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988731 3456678888888888777666544
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=222.90 Aligned_cols=388 Identities=15% Similarity=0.088 Sum_probs=246.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+|..+.++.+..+++.+..+......| .+.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 90 (406)
T PRK11551 13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF 90 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 455566677777777777776655554 55678999999999999999999999999999999997 9999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 91 ~~~~~~~~~~~-------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 91 GLFSLATAQAW-------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHhc-------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 88888877765 57788999999999999999999999999999988 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 267 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (577)
.+++.+.+.++|..+++.+++.+.+..+|++.|++.++..++..+......++.++..++++.
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------- 202 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA----------------- 202 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-----------------
Confidence 999999999999999999999998989999999987765444443333322221110000000
Q ss_pred CCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHH-HHHH
Q 008106 268 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIF-PIFM 346 (577)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (577)
. +. .....+. . + + +.. .++..... ..+.
T Consensus 203 ----------------------------~-~~--------~~~~~~~-~-------~---~--~~~-~~~~~~~~~~~~~ 231 (406)
T PRK11551 203 ----------------------------G-KQ--------RAPVLRA-L-------F---G--EGR-ATATLLLWISYFF 231 (406)
T ss_pred ----------------------------c-hh--------hhhhHHH-H-------h---h--hhh-hhHHHHHHHHHHH
Confidence 0 00 0000000 0 0 0 000 11111111 1111
Q ss_pred HhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHH
Q 008106 347 STIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGL 426 (577)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 426 (577)
....++....+.+..... .+.+ ....+.......++.+++..+.+++.|+..+| +.+..+.
T Consensus 232 ~~~~~~~~~~~~p~~~~~--~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~ 292 (406)
T PRK11551 232 TLIVLYFLLNWLPSLLVG--QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIY 292 (406)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHH
Confidence 111111111111111110 1111 11112223333344555555666665554332 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHH
Q 008106 427 ILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWA 506 (577)
Q Consensus 427 ~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~ 506 (577)
+...++++..... .+.+.+....++.+++.....+..+++..+.+|++.||+++|+.+.
T Consensus 293 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 351 (406)
T PRK11551 293 AGILASLAALAAA---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVA 351 (406)
T ss_pred HHHHHHHHHHHhc---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHH
Confidence 3344443333321 1334445556777777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 507 SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 507 ~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
...+|..+++.+.+.+.+.. ..+...++..+...+++.+..+...++.+.
T Consensus 352 ~~~~g~~~g~~~~g~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (406)
T PRK11551 352 VGRLGSMAGPLLAGQLLALG----------------RSTVGVIGASIPVILVAALAALLLVSRPSR 401 (406)
T ss_pred hhhHHHHHHhhhHhhhhccC----------------CchHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 99999999999999876311 223345666666666666666555554433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=222.29 Aligned_cols=167 Identities=14% Similarity=0.049 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.++..++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence 344555555566665566655665554 57999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+++++.+ +.+.+.+.|++.|++.|...+...+++.|++|+++ |++.++
T Consensus 102 ~~~~~~~~-------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~ 150 (434)
T PRK11663 102 NILFGFSS-------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWA 150 (434)
T ss_pred HHHHHHHh-------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHH
Confidence 99888876 57778889999999999888999999999999988 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS 230 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (577)
+++.+.++|..++|.+.+++.+.+|||+.|++.++..++.
T Consensus 151 ~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 151 IWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877655443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-23 Score=217.88 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
+.++...++..++.+.+.+.++.|+++++|+|..+.|++.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++.+.+ +.+.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.
T Consensus 92 ~~~~~~-------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~ 140 (400)
T PRK11646 92 TMAIAH-------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLL 140 (400)
T ss_pred HHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 887764 56778899999999998888888999999999888 99999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
+...++|..+||.+++++. .+||++.|++.++..++..++
T Consensus 141 ~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 141 MMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 689999999877665554433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=221.38 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=153.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.+|.++.+.+..++..+.++.+.++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence 456788888999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.+.+++.+.+.+.+.+...+...+...|.+|+++ |++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (395)
T PRK10054 84 ASGFIAIPLVN-------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK 132 (395)
T ss_pred HHHHHHHHHHh-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence 88888888765 55667777888887777777888899999999888 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
.+++.+...++|.+++|.+++++.+ .||+..|.+.++..++.++..
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 799999998877666554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=217.94 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=151.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+|+.++.+.+..+++......+.... ..+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 45666666666667777766554444 588999999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++++++ +.+.+++.|+++|++.++..+....++.|++|+++ |++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~ 132 (412)
T TIGR02332 84 GIASTATMFAT-------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RAR 132 (412)
T ss_pred HHHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHH
Confidence 99999998876 56789999999999999999998899999999988 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIED------NKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
..++++.+.++|..+++.+++++.+ ..|||+.|++.++..++..++.++.
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998863 3699999999877665544444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=216.38 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=138.0
Q ss_pred HHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 008106 51 SNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130 (577)
Q Consensus 51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 130 (577)
....+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++..++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3444568889999999999999999999999999999999997 999999999999999999988875
Q ss_pred ccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHh
Q 008106 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l 210 (577)
+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+.+++
T Consensus 81 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l 141 (399)
T TIGR00893 81 -------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWI 141 (399)
T ss_pred -------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998 99999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 211 EDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
.+..||++.|.+.++..++..+..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 142 LIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999887766555444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=219.87 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=155.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+.++.+.+..++..+..+.+.+.+|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 345788888889999898888888888775 7999999999999999999999999999999997 99999999999998
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++.+++ +.+.+++.|+++|++.+...+...+++.|.+|+++ |++.
T Consensus 87 ~~~~~~~~~~-------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (471)
T PRK10504 87 LGSLFCALSG-------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAA 135 (471)
T ss_pred HHHHHHHHhC-------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 8888877654 56778999999999999999999999999999888 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
+++.+...++|..+||.+++++.+..|||+.|.+......+..+......+
T Consensus 136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999887765555554444333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=226.40 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=134.6
Q ss_pred HHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 008106 49 NASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128 (577)
Q Consensus 49 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (577)
+...+.+++.+++|++..+.+++.+++.++..++++++|+++||+ |||+.++++.++.+++.+++++++
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 344555677789999999999999999999999999999999997 999999999999999998888875
Q ss_pred ccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHH
Q 008106 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 208 (577)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~ 208 (577)
+.+.++++|++.|++.|+..+...+++.|.+|++. |+..++++.....+|.++++.++.
T Consensus 254 ---------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 254 ---------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999998 999999999999999999988766
Q ss_pred Hhccc-------------cchhHHHHHHHHHHHHHHHHHHhc
Q 008106 209 WIEDN-------------KGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 209 ~l~~~-------------~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
++... .+||+.|++.++..++.++..++.
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 55432 368998888777666655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=205.93 Aligned_cols=379 Identities=15% Similarity=0.088 Sum_probs=260.8
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
+..+..++.+.++.|.....=+.....+ +-+.+++|.|..++|++++.|..+..++.++...+.||+ .||+.++....
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence 3446678888888888888877776666 456689999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
++.++.+++++++ +++.+.++|++.|+.-|..++...+..+|..|+++ |
T Consensus 87 lFi~~n~l~alAp-------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~ 135 (394)
T COG2814 87 LFIVSNLLSALAP-------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------R 135 (394)
T ss_pred HHHHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------h
Confidence 9999999999997 78899999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCC--CchhHHHHHHHHHHH
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG--SPLTTIFKVLTAAIF 263 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 263 (577)
+++.+....+..+...+|..++.++.+.+|||..|++.++..++.++..+...| +++++++ .+..+..
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~-------- 205 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLL-------- 205 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHH--------
Confidence 999999999999999999999999999999999999988888877777666555 1111100 0000000
Q ss_pred hhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHH
Q 008106 264 NTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (577)
+.-.+++++..
T Consensus 206 -------------------------------------------------------------------~~l~~p~v~~~-- 216 (394)
T COG2814 206 -------------------------------------------------------------------RLLRRPGVLLG-- 216 (394)
T ss_pred -------------------------------------------------------------------HHhcCchHHHH--
Confidence 00011112111
Q ss_pred HHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHH
Q 008106 344 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423 (577)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~ 423 (577)
.....+... .....|++....+....+-.....++......++.+++..+.+++.||..+ +.+.
T Consensus 217 -l~~t~l~~~---g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~------------~~l~ 280 (394)
T COG2814 217 -LLATFLFMT---GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPR------------RALI 280 (394)
T ss_pred -HHHHHHHHc---chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccccch------------hHHH
Confidence 111111111 122222222222222111001112233344455566666666666555211 1244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCC--chhHHHHH
Q 008106 424 TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP--LSMRSLAT 501 (577)
Q Consensus 424 ~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P--~~~rg~~~ 501 (577)
....+..+.++.+.+.. .+.+..+...++.+++ ..|....+..+..+ ++.++.++
T Consensus 281 ~~~~l~a~~~l~l~~~~--------------------~~~~~~~~~~~~wg~a---~~~~~~~~~~~~a~~~p~~~~~a~ 337 (394)
T COG2814 281 AALLLLALALLALTFTG--------------------ASPALALALLFLWGFA---FSPALQGLQTRLARLAPDAADLAG 337 (394)
T ss_pred HHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHH---hhhhhhHHHHHhcccCCCchHHHH
Confidence 44455555555544422 2333333344444443 34555566665555 67899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 502 SLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 502 g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
+++....++|..+|..+.+.+.+ +.++....+..+++.++++++.+...++.++
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~-----------------~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLD-----------------ALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------hhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999873 1456667888888888887776655555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=211.57 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=152.0
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHH
Q 008106 25 RHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISA 104 (577)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~ 104 (577)
.+..|+.+..+.+..++.....|.....+|. +.+++|+++.+.++..+.+.++..+++++.|+++||+ |||+.+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 3446776666666666666666666666665 4579999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 105 AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++.+++.+++.+++ +.+.+++.|+++|++.|...+...+++.|++|+++
T Consensus 93 ~~~~~~~~~~~~~~-------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------ 141 (394)
T PRK10213 93 VLLTLSCLLVSFAN-------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------ 141 (394)
T ss_pred HHHHHHHHHHHHHC-------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------
Confidence 99999998888765 68899999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
|+++.++...+.++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=222.07 Aligned_cols=389 Identities=13% Similarity=0.061 Sum_probs=240.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
|..+..+++..++..+..-.+..-+|. +.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||+.+.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 455667777777777776655555554 4679999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccC-Ccccchhhhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQY-DETTQLGRKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~ 187 (577)
++++++++++ +.+.++++|+++|+|.++..+.....+.+.+ |+++ |++
T Consensus 83 ~~~~~~~~a~-------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~ 131 (495)
T PRK14995 83 LASLAAAFSP-------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNM 131 (495)
T ss_pred HHHHHHHHcC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHH
Confidence 9999999876 6788999999999999998888777787776 5566 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHH------HHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFK------VLTAA 261 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 261 (577)
+++++....++|..+||.+++++.++.|||+.|++...+.++.+++.++..++.++++.++.+...... .+...
T Consensus 132 ~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 132 ALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988766655554444433332222111111111100 00011
Q ss_pred HHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchh-----------HHHHHHhhcCCCCCccccchh
Q 008106 262 IFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDI-----------KFLNRALRNNPAYPIVQCTVK 330 (577)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 330 (577)
.++. . +.. .+..... .+... .. ....|. ...
T Consensus 212 ~~~~----~-~~~----------------------------~~~~~~~~~~~~~~~~l~~f~~~-e~-~~~~p~---~~~ 253 (495)
T PRK14995 212 AKTA----L-KGF----------------------------LSLWVTSLTLLTGALLLGLFIRT-QL-AASRPM---IDM 253 (495)
T ss_pred HHhc----c-ccC----------------------------CchHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCC---cCH
Confidence 1100 0 000 0000000 00000 00 000111 000
Q ss_pred hhhHHHHHHhHHHHHHH-hHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhccccc
Q 008106 331 EVEEVKIVVKIFPIFMS-TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKV 409 (577)
Q Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~ 409 (577)
+.-..+..........+ ...+.... .....+.+...+.+ ....+.......+...++.++.+++.++..+
T Consensus 254 ~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~-- 324 (495)
T PRK14995 254 RLFTHRIILSGVVMAMTAMITLVGFE-LLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGL-- 324 (495)
T ss_pred HHhCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--
Confidence 00111111111111111 11111100 00011111111111 1112222222334445555566655544332
Q ss_pred ccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhh
Q 008106 410 TKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFF 489 (577)
Q Consensus 410 ~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~ 489 (577)
++.+..|..+..++........ ...+.+......++.|++.+...+.....+.
T Consensus 325 ---------~~~~~~g~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~ 377 (495)
T PRK14995 325 ---------RLVATGGMALSALSFYGLAMTD------------------FSTQQWQAWGLMALLGFSAASALLASTSAIM 377 (495)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhc------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2335567776666665544321 0123344556678889999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 490 TDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 524 (577)
Q Consensus 490 ~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~ 524 (577)
+..|++.++.+.+++++.+.+|..+|+.+.+.+..
T Consensus 378 ~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 378 AAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-22 Score=214.08 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CCchhhhhH---HHHHHHHHHHHHhHHHHhhhcccchhHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMH---FSPSSSANI---VTNFMGTAFLLALFGGFLADAFFTTYRIYVIS 103 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg---~s~~~~~~~---~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~ 103 (577)
+.+....+..+++.+.+.. .+....++.++++ .+..+.+.+ .+...++..++++++|+++||+ ||||++.++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~ 99 (432)
T PRK10406 22 WAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence 3444555667777777665 5666678888875 455544333 3344455558999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh
Q 008106 104 AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK 183 (577)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (577)
.++++++++++++++++.... ..+...+++.|+++|++.|+..+...+++.|++|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~----- 157 (432)
T PRK10406 100 VCMMCFGSLVIACLPGYETIG-----------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR----- 157 (432)
T ss_pred HHHHHHHHHHHhhcCCchhHH-----------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-----
Confidence 999999999998876321000 0023468899999999999999999999999999988
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHhc--------cccchhHHHHHHHHHHHHH
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATILLS 230 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~~~~~~ 230 (577)
|+...++.+.+.+.|..+++.+...+. +.+|||+.|++.++..++.
T Consensus 158 -rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 -KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999999988888899888887655543 2579999999877655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=214.02 Aligned_cols=385 Identities=14% Similarity=0.096 Sum_probs=246.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhh-----hhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSS-----ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISA 104 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~-----~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~ 104 (577)
|.+..+.+..++..+++....+.+|.|++ ++|.+..+. +++.+.+.+...++.++.|+++||+ |||+.+.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34667777888888888888888988885 689887653 7888889999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 105 AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++..++.+++.+.+ +.+.+++.|++.|++.+ ..+.....+.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------ 139 (408)
T PRK09874 92 LGMGIVMVLMGLAQ-------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------ 139 (408)
T ss_pred HHHHHHHHHHHHHh-------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------
Confidence 99888888877765 57788899999998865 45777788899999888
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHh
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFN 264 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (577)
|++..++.+...++|..++|.+.+.+.+..||++.|.+.++..++..+..+...++.++..++++. .+
T Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 207 (408)
T PRK09874 140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH----------- 207 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH-----------
Confidence 999999999999999999999999999989999999988776655544433322211100000000 00
Q ss_pred hccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHH
Q 008106 265 TCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPI 344 (577)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (577)
..+.... ..+.+......
T Consensus 208 ----------------------------------------------~~~~~~~--------------~~~~~~~~~~~-- 225 (408)
T PRK09874 208 ----------------------------------------------MREVVTS--------------LKNPKLVLSLF-- 225 (408)
T ss_pred ----------------------------------------------HHHHHHh--------------CcCCchHHHHH--
Confidence 0000000 00011111011
Q ss_pred HHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHH
Q 008106 345 FMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGT 424 (577)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~ 424 (577)
..............+.+..+...............+.+.....+..++..++.+++.|++.+| +.+..
T Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~ 293 (408)
T PRK09874 226 -VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILIT 293 (408)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHH
Confidence 001111111111112111111110000000000001111112223334444444554443322 22444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHH
Q 008106 425 GLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 504 (577)
Q Consensus 425 g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~ 504 (577)
+..+..++++..... .+.+.+.+..++.|++.+...|...++..+..|++.||+.++++
T Consensus 294 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (408)
T PRK09874 294 ALIFSVLLLIPMSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYN 352 (408)
T ss_pred HHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHH
Confidence 554444444433331 13344555667889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 505 WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 505 ~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
.....+|..+++.+.+.+.+ ..+++..|++.+++.+++.+..+...++.+.
T Consensus 353 ~~~~~~g~~~gp~~~G~l~~-----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 403 (408)
T PRK09874 353 QSFRDIGNVTGPLMGAAISA-----------------NYGFRAVFLVTAGVVLFNAVYSWNSLRRRRI 403 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHh-----------------hcchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988763 1245678899999988888877666655543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=210.37 Aligned_cols=153 Identities=17% Similarity=0.088 Sum_probs=122.8
Q ss_pred HHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 008106 51 SNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130 (577)
Q Consensus 51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 130 (577)
....+.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+ |||+++..+......+. +......
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~~----------- 77 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDPF----------- 77 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHhc-----------
Confidence 3344556789999999999999999999999999999999997 99998765554444433 2222211
Q ss_pred ccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHh
Q 008106 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l 210 (577)
+...+++.|+++|+|.+.. ......++|++|+++ |++++++.+.+.++|..+++.+++++
T Consensus 78 -------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l 137 (368)
T TIGR00903 78 -------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKI 137 (368)
T ss_pred -------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999864 555566799999888 99999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 211 EDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
.+.+|||+.|++.+++.++..++.++
T Consensus 138 ~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 138 YTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665555444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=216.21 Aligned_cols=389 Identities=12% Similarity=0.029 Sum_probs=242.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
+..++...++..+........+|.+. ++++.++.+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence 44455556666666655556666665 56778999999999999999999999999999997 99999999888888777
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
.+++...... ..+.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++
T Consensus 97 ~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 97 IGLALNAFLP--------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 6655321000 0156778889999999988888888899999999888 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccC-CCCCchhHHHHHHHHHHHhhccCCC
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI-PTGSPLTTIFKVLTAAIFNTCKSKN 270 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (577)
.+...++|..+||.+++++.+..||++.|.+.++..++..+..+..++ .+.++ +++++..
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~------------------ 211 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPREHPLR------------------ 211 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcccccchH------------------
Confidence 999999999999999999998889999998877766555444333221 11000 0000000
Q ss_pred CCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHH
Q 008106 271 SSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIM 350 (577)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (577)
+..+. ++ .....+.+........ +
T Consensus 212 ---------------------------------------~~~~~---------~~-----~~~~~~~~~~~~~~~~---~ 235 (417)
T PRK10489 212 ---------------------------------------SLLAG---------FR-----FLLASPVVGGIALLGG---L 235 (417)
T ss_pred ---------------------------------------HHHHH---------HH-----HHHcChHHHHHHHHHH---H
Confidence 00000 00 0000111111111111 1
Q ss_pred HHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHH
Q 008106 351 LNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI 430 (577)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 430 (577)
.. ........+..+. ....+.-....+.+.....++.+++..+.+++. +|. ++.+.+..+..+..
T Consensus 236 ~~-~~~~~~~~~p~~~---~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~ 300 (417)
T PRK10489 236 LT-MASAVRVLYPALA---DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSF 300 (417)
T ss_pred HH-HHHhHHHhhHHHH---HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHH
Confidence 11 1111111111111 111100001112222333344444444444433 221 11223455555555
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHH
Q 008106 431 VAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM 510 (577)
Q Consensus 431 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~l 510 (577)
++++..... .+++......++.+++.+...+...++..+..|++.||+++|+.++...+
T Consensus 301 ~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T PRK10489 301 LAVGLFGLM---------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVT 359 (417)
T ss_pred HHHHHHHcc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence 555544431 13344556667778888887888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008106 511 GYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576 (577)
Q Consensus 511 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~~~~ 576 (577)
|..+++.+.+.+.+. .++...++..+++.++..++.+...++++++++|
T Consensus 360 g~~~g~~l~G~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 360 GDAIGAALLGGLGAM-----------------MTPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred hHhHHHHHHHHHHHH-----------------hchhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999998742 1223456666766666666666666777665543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=207.61 Aligned_cols=358 Identities=11% Similarity=0.034 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 008106 34 FVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL 113 (577)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l 113 (577)
.+....++..+........+|.|.. +++.++.+.+++.+.+.++..++.++.|+++||+ ||||.+.++.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 3556666777776666677777775 6899999999999999999999999999999997 9999999999998888887
Q ss_pred HHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHH
Q 008106 114 LTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 193 (577)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (577)
..+..... ..+.+.+++.|++.|++.+...+...+++.|++|+++ |++.+++.+
T Consensus 81 ~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 134 (365)
T TIGR00900 81 LPFVALLG--------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQ 134 (365)
T ss_pred HHHHHHcC--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHH
Confidence 77654211 1156788999999999999999999999999999988 999999999
Q ss_pred HHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCC
Q 008106 194 FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSN 273 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (577)
...++|..++|.+++++.+..||++.|++.++..++..+..+..+.+.+++++ +++..+
T Consensus 135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------------- 193 (365)
T TIGR00900 135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALSN-------------------- 193 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccch--------------------
Confidence 99999999999999999999999999998777665554444332221110000 000000
Q ss_pred cccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHH-HHhHHHH
Q 008106 274 AVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIF-MSTIMLN 352 (577)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 352 (577)
....+..+ .++ +..+.+.+....... .....+.
T Consensus 194 --------------------------------~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 227 (365)
T TIGR00900 194 --------------------------------AVLRDTRE---------GIK-----FVLKNPLLRTLLLLALLFNLVFA 227 (365)
T ss_pred --------------------------------hHHHHHHh---------HHH-----HHHcCcHHHHHHHHHHHHHHHHH
Confidence 00000000 000 000011111111111 1111111
Q ss_pred hhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHH
Q 008106 353 CCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVA 432 (577)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~ 432 (577)
.........+.....+.+.. ..+.+.....++.+++..+.+++ .+|. ++++.+..+..+..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 228 PAIVALFPYVQSKYLGRGST------HYGWVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHhHHHHHHHhCCchH------HHHHHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHH
Confidence 11101111111111111110 11122222233333444444433 3332 2223344455555555
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHH
Q 008106 433 MAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGY 512 (577)
Q Consensus 433 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~ 512 (577)
++...... + +.+...+..++.+++.+...+...++..+..|++.||++.|+.++...++.
T Consensus 291 ~~~~~~~~-------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 350 (365)
T TIGR00900 291 ILVVGLTP-------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAW 350 (365)
T ss_pred HHHHHhhc-------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 55544421 1 245566677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 008106 513 YFSTVLVSIVN 523 (577)
Q Consensus 513 ~~~~~l~~~~~ 523 (577)
.+++.+.+.+.
T Consensus 351 ~~g~~~~g~l~ 361 (365)
T TIGR00900 351 PLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=219.90 Aligned_cols=187 Identities=16% Similarity=0.148 Sum_probs=138.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------CCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFM--------HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIY 100 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------g~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l 100 (577)
.+.++...+..+...+....+.... ..+++.+ |.+..+.+++.+.+.++..+++++.|+++||+ ||||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTV-ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhH-HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 3444444544444444433333323 2244444 88999999999999999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (577)
.++.+++.++.++++++........ ..+......++++|+++|++.|+..+...++++|++|+++
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~-- 153 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIG-------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI-- 153 (479)
T ss_pred HHHHHHHHHHHHHHHhhcccccccc-------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh--
Confidence 9999999988887776421000000 0011135678899999999999999999999999999998
Q ss_pred hhhchhhhHHHHHHHHhhhhHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHHHHHh
Q 008106 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 181 ~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
|++.+++...+..+|..+++.+++.+. +.+|||+.|++.++..++..+..++
T Consensus 154 ----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 154 ----RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987766543 4579999999887766655544433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=210.31 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=152.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHH
Q 008106 24 GRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVIS 103 (577)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~ 103 (577)
..+.+|+.+..+.+..++..+..+.+.... ..+++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 345567777888888888888877665555 466789999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh
Q 008106 104 AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK 183 (577)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (577)
.++..++.+++.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFAP-------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL----- 133 (405)
T ss_pred HHHHHHHHHHHHHhc-------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh-----
Confidence 999999998888765 57788999999999999999999999999999988
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHH
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQWGFGISTATILLSIP 232 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g--w~~~f~~~~~~~~~~~~ 232 (577)
|++..++.+.+.++|..+++.+.+.+.+..| |++.|.+.++..++.++
T Consensus 134 -~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 134 -RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183 (405)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 99999876655544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=210.44 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
....+...+.....|.+ +.+.+++.+++|+++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 6 LVGTVIMCFTSGYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFT 83 (377)
T ss_pred eHHHHHHHHHhhHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHH
Confidence 33333333333345544 4456778889999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++++++ +.+.+++.|.+.|++.+...+.....+.|++| ++ |++..++.
T Consensus 84 ~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~ 131 (377)
T TIGR00890 84 FYAIAD-------------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGII 131 (377)
T ss_pred HHHHHH-------------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHH
Confidence 998876 67789999999999999888888888888887 45 89999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
..+.++|..+++.+.+.+.+..|||+.|++.++..++..+..+
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 132 IGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777777777778999999988876655544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=207.18 Aligned_cols=174 Identities=13% Similarity=0.066 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENL---AYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~---~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
+..+.++...+.+.. ....+.+.++. +.+++|.++.+.++..+.+.++..+++++.|+++||+ ||||.+.++..+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 87 (406)
T PRK15402 10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAF 87 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 334444444444433 33334444443 5579999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
..++.+++.+.+ +.+.+++.|+++|++.+...+...+.+.|.+|+++ |.
T Consensus 88 ~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~ 136 (406)
T PRK15402 88 FILTCLAILLAQ-------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AI 136 (406)
T ss_pred HHHHHHHHHHHc-------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HH
Confidence 999888887765 56778899999999999888888999999999988 88
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+..++.+....+|..++|.+++++.+..||++.|++.++..++..+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 137 KITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 98898888888999999999999999899999999877766655554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=208.21 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008106 41 LENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120 (577)
Q Consensus 41 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~ 120 (577)
..+..++.+.+.+| .+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+++++.+++++++
T Consensus 20 ~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~-- 95 (393)
T PRK09705 20 NMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP-- 95 (393)
T ss_pred HcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--
Confidence 33334455555554 56789999999999999999999999999999999997 999999999999999999999986
Q ss_pred cCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhh
Q 008106 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA 200 (577)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 200 (577)
+...++++|+++|+|.+...+.....+.|++| ++ |++.++.+..+.++|.
T Consensus 96 -----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~ 145 (393)
T PRK09705 96 -----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGG 145 (393)
T ss_pred -----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHH
Confidence 56778999999999999999999999999987 66 8999999999999999
Q ss_pred HHHHHHHHHhcccc-chhHHHHHHHHHHHHHH
Q 008106 201 LIAVTFVVWIEDNK-GWQWGFGISTATILLSI 231 (577)
Q Consensus 201 ~igp~~~~~l~~~~-gw~~~f~~~~~~~~~~~ 231 (577)
.+++.+++++.++. |||+.+.+.++..++.+
T Consensus 146 ~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 146 GLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999988875 89988876555444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=219.50 Aligned_cols=175 Identities=11% Similarity=-0.030 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANAS---NLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+......++..+..|.... .....+.+++|++..+.+++.+.+.+++.+++++.|+++||+ |||+++.++.++.+
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 105 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSA 105 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHH
Confidence 34344444444444443322 234567789999999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.++.++.... ...+.+.+++.|+++|++.+...+....++.|++|+++ |+++
T Consensus 106 ~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a 159 (467)
T PRK09556 106 ICMLGFGASLGS--------------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRF 159 (467)
T ss_pred HHHHHHHHHHhc--------------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeee
Confidence 877776653100 01167889999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNK---GWQWGFGISTATILLSIPI 233 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~---gw~~~f~~~~~~~~~~~~~ 233 (577)
++++..+.++|.++++.+..++.+.. +|+..|.+.++..++..++
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~ 207 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFI 207 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHH
Confidence 99999999999999998887766543 5888888776655444333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=216.08 Aligned_cols=145 Identities=25% Similarity=0.367 Sum_probs=125.4
Q ss_pred CchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCc
Q 008106 64 SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGG 143 (577)
Q Consensus 64 s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (577)
+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 125 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFAL---------------------- 125 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcccc----------------------
Confidence 389999999999999999999999999997 999999999999999998887654211
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHH---HHhccccchhHHH
Q 008106 144 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV---VWIEDNKGWQWGF 220 (577)
Q Consensus 144 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~---~~l~~~~gw~~~f 220 (577)
+.+.++++|+++|+|.+...+...++++|++|+++ |++.+++++.+.++|..+++.++ +.+.+..|||+.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34579999999999999999999999999999998 99999999999999999999998 7777778999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 008106 221 GISTATILLSIPIFLLG 237 (577)
Q Consensus 221 ~~~~~~~~~~~~~~~~~ 237 (577)
.+.++..++.++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~l 216 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99766555554444443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=209.54 Aligned_cols=166 Identities=22% Similarity=0.379 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLT 115 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~ 115 (577)
+++.++..+........++.++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4566777777777777777688899999999999999999999999999999999997 999999999999999966666
Q ss_pred HHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHH
Q 008106 116 VQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFC 195 (577)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 195 (577)
+++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+..
T Consensus 81 ~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~ 129 (352)
T PF07690_consen 81 FAS-------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAG 129 (352)
T ss_dssp HHC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHH
T ss_pred hhh-------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccch
Confidence 543 45689999999999999999999999999999988 99999999999
Q ss_pred HhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 196 LSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 196 ~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
.++|..++|.+++++.+..||++.|++.++..++..++
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 99999999999999999899999999998887777654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=210.08 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=144.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.+..+.+..+...+.++.. .....++++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 445566666666666666655 4444567789999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++++++ +.+.++++|++.|++.|...+....++.|.+|+++ |+++
T Consensus 95 ~~~~~~~~~~-------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 95 VGTGLSGLAS-------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHHh-------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 9999988876 67889999999999999999999999999999998 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT 226 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~ 226 (577)
.++...+.++|.++++.+.+.+.+..|||+.|++..+.
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 99999999999999999999999989999999875543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=204.10 Aligned_cols=169 Identities=16% Similarity=0.123 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHH-HHHHHHHHHHHH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVI-SAAIEFMGLLLL 114 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~-~~~~~~~~~~l~ 114 (577)
.+..++..++.....+.++.|+++++|.|+.+.+++.+.+.+...+.+++.|+++||+ ||||.+++ +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999999999999999999999999999999999997 99887665 445555666676
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh--HHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF--FNYY 192 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~ 192 (577)
++++ +.+.+++.|++++.+.+...|...++..|..|+++ |... .+..
T Consensus 82 ~~~~-------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~ 130 (375)
T TIGR00899 82 AWNR-------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVM 130 (375)
T ss_pred Hhcc-------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHH
Confidence 6654 56677888888887777777877788888877655 5543 5677
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+...++|..++|.+++++.+..|||+.|++.++..++..+..++
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999899999999988766655544443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=205.57 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=142.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.+...++..+......+.. ....+++.+++|.++.+.+++.+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 16 WRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS 93 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence 444444444555555554433 4445566788999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.
T Consensus 94 ~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~ 142 (398)
T TIGR00895 94 VFTLLCALAT-------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA 142 (398)
T ss_pred HHHHHHHHcc-------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence 8888887764 56778899999999999999999999999999988 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSI 231 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (577)
+++.+...++|..+++.+.+++.+..||++.|++.++..++..
T Consensus 143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 9999999999999999999999999999999998764444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=211.70 Aligned_cols=170 Identities=10% Similarity=0.066 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 34 FVLAVEVLENLAYLAN---ASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 34 ~~~~~~~~~~~~~~~~---~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.++...++....+|.. .....+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHH
Confidence 3334444444444433 23444577777 99999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+++++..... .+.+.+++.|++.|++.|...+.....+.|++|+++ |+++++
T Consensus 107 ~~~~~~~~~~~---------------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~ 159 (452)
T PRK11273 107 MLFMGFVPWAT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 159 (452)
T ss_pred HHHHHhhhccc---------------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHH
Confidence 88887753101 146678888999999999888888888999999988 999999
Q ss_pred HHHHHHhhhhH-HHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 191 YYVFCLSCGAL-IAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 191 ~~~~~~~lG~~-igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
+++.+.++|+. .+|.+...+....|||+.|++.++..++..+
T Consensus 160 ~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 160 VWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999874 4555443343445899999987766555433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=216.20 Aligned_cols=391 Identities=15% Similarity=0.125 Sum_probs=239.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.+..+++..++..+........+ +++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34455566666666655444444 556679999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+++++++ +...++++|+++|++.+...+...+++.|.+|+++ |+++++
T Consensus 81 ~~~~~~~~-------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 129 (485)
T TIGR00711 81 SLLCGVAP-------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMA 129 (485)
T ss_pred HHHHhCcC-------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHH
Confidence 99988765 67789999999999999999999999999999988 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHH----HHHhhc
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA----AIFNTC 266 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 266 (577)
+++....+|..+||.+++++.+++||++.|++.+...++..++.++..++.++++. ++.+.....+.. ......
T Consensus 130 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~~~ 207 (485)
T TIGR00711 130 IWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLYGL 207 (485)
T ss_pred HHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998776655554444433332221111 111111110000 000000
Q ss_pred cCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhH-----------HHHHHhhcCCCCCccccchhhhhHH
Q 008106 267 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIK-----------FLNRALRNNPAYPIVQCTVKEVEEV 335 (577)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (577)
.+...+ ++ .+...... +..+ .. ..+.|.. +.+.-..
T Consensus 208 ~~~~~~-----------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~ 254 (485)
T TIGR00711 208 SEGPER-----------------GW-----------FDSNEILILSITGLVAIIAFVVW-EL-TDDNPLV---DLRLFKY 254 (485)
T ss_pred hhCCCC-----------------CC-----------CCchHHHHHHHHHHHHHHHHHHH-HH-cCCCCcc---CHHHHcC
Confidence 000000 00 00000000 0000 00 0001110 0000011
Q ss_pred HHHHh-HHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccC
Q 008106 336 KIVVK-IFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEM 414 (577)
Q Consensus 336 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~ 414 (577)
+.... ....+.....++......+. +.....+.+ ....+.......++.+++.++.+++.++..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~------- 320 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPL-YLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDP------- 320 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-------
Confidence 11111 11111111111111111111 111111111 1111222333344455555555555443332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCc
Q 008106 415 GITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL 494 (577)
Q Consensus 415 ~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~ 494 (577)
++.+..+..+..++.+++.... ....+.+..+...++.|++.+...+.......+..|+
T Consensus 321 ----~~~~~~g~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~ 379 (485)
T TIGR00711 321 ----RKLVTIGLILYAVGFYWRAFTF-----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP 379 (485)
T ss_pred ----HHHHHHHHHHHHHHHHHHhccC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3345667777777666554210 0113455566667889999999888888888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 495 SMRSLATSLSWASLAMGYYFSTVLVSIVNN 524 (577)
Q Consensus 495 ~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~ 524 (577)
+.||+++|+.++.+.+|..+|+.+.+.+..
T Consensus 380 ~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 380 HKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=210.32 Aligned_cols=176 Identities=17% Similarity=0.140 Sum_probs=133.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhh-hh-----HHHHHHHHHHHHHhHHHHhhhcccchhHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSS-AN-----IVTNFMGTAFLLALFGGFLADAFFTTYRIYVI 102 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~-~~-----~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~ 102 (577)
++.+....+..+++.+.+.. ......++.++++.+.++. .+ +.++..++..+++++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 34566677788888887664 4555568888886544332 22 23566778889999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhh
Q 008106 103 SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182 (577)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 182 (577)
+.++++++++++++++++..+. -.....+++.|+++|+|.|+..+...+++.|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g-----------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~---- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG-----------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK---- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH-----------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC----
Confidence 9999999999999986422100 0001248899999999999999999999999999998
Q ss_pred hchhhhHHHHHHHHhhhhHHHHHHHHHhc--------cccchhHHHHHHHHHHHH
Q 008106 183 KQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATILL 229 (577)
Q Consensus 183 ~~r~~~~~~~~~~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~~~~~ 229 (577)
|++..++...+..+|..+|+.+..++. ..+|||+.|++.++..++
T Consensus 152 --Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 --RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 999999988888888888876654432 357999999987654443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=203.62 Aligned_cols=174 Identities=9% Similarity=0.139 Sum_probs=146.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
++|..+.+++..++.....+.+-..+|. +.+++|+|.++.+++.+.+.++..++++++|+++||+ |||+.+.++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 4566777777777777776655555544 5679999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.+.+.+.|+++|++.|...+...+.+.|.+|+++ |+.
T Consensus 83 ~i~~~l~~~~~-------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~ 131 (394)
T PRK03699 83 ILAVAGLMFSH-------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS 131 (394)
T ss_pred HHHHHHHHHcc-------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence 99998888765 57788999999999999888889999999999887 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
..+..+...++|+.++|.+.+++.. ..|||+.|.+.++..++..++.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9998888889999999999888754 5799999998776655444433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=203.93 Aligned_cols=172 Identities=12% Similarity=0.124 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++.+.+..++.....+...+.+|. +++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 45677777778888887777777755 5679999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.+++++++ +.+.+++.|++.|++.+...+.....+.|++|+++ |++.+
T Consensus 81 ~~~l~~~~~-------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 129 (382)
T PRK10091 81 GNAMFTLSS-------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV 129 (382)
T ss_pred HHHHHHHhC-------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence 999998876 67889999999999999888888888999999887 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
+++..+..+|..++|.+++++.+..|||+.|.+.++..++..+..
T Consensus 130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998999999998887655544433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=200.56 Aligned_cols=346 Identities=19% Similarity=0.237 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
+.+....++..+.++......+.|. +++|.++.+.+++.+...+...++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 4556677788888888877887776 57799999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 80 ~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 128 (352)
T cd06174 80 LLAFAS-------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLF 128 (352)
T ss_pred HHHHhc-------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHH
Confidence 888764 67789999999999999999999999999999988 99999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCC
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSS 272 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (577)
+...++|..++|.+.+.+.+..+|++.|.+.++..++..+...+.. +
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---------------- 175 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-----------------R---------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------H----------------
Confidence 9999999999999999999988999999988777665554433321 0
Q ss_pred CcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHH-HHHhHHH
Q 008106 273 NAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPI-FMSTIML 351 (577)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 351 (577)
+....... +......
T Consensus 176 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 191 (352)
T cd06174 176 ----------------------------------------------------------------LLLLLALAFFLLSFGY 191 (352)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHhHH
Confidence 00000000 0000001
Q ss_pred HhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhH-HHHHHHHHHH
Q 008106 352 NCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQ-RIGTGLILSI 430 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~-~i~~g~~l~~ 430 (577)
.... .....+.....+.+ ....+.+.....+...++.++.+++.++..+| + .+..+..+..
T Consensus 192 ~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 253 (352)
T cd06174 192 YGLL-TYLPLYLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAA 253 (352)
T ss_pred HHHH-HHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHH
Confidence 1111 11111111100111 11112233334455555666666655544333 2 4666777777
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHH
Q 008106 431 VAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM 510 (577)
Q Consensus 431 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~l 510 (577)
++.+...... +.+...+..++.+++.+...+...++..+..|++.|++.+|+.+....+
T Consensus 254 i~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (352)
T cd06174 254 LGLLLLALAP---------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312 (352)
T ss_pred HHHHHHHHhc---------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 7776665532 3566778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008106 511 GYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFL 564 (577)
Q Consensus 511 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~ 564 (577)
|..+++.+.+.+.+ ..++...|++.+++++++.+.++
T Consensus 313 ~~~i~~~i~g~l~~-----------------~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 313 GGALGPLLAGLLLD-----------------TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHhc-----------------ccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999998863 12345578888888887776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=208.72 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=138.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKF----MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISA 104 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~----lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~ 104 (577)
++.+.++.+..+...+....+....+..-.+. .+.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.
T Consensus 15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~ 93 (502)
T TIGR00887 15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 34455556666666665544444444332222 234556778899999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 105 AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++..++.++++++.+.. ...+...++++|+++|++.|+..+..+.++.|.+|+++
T Consensus 94 ~~~~v~~~~~~~~~~~~-------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------ 148 (502)
T TIGR00887 94 IIMIIATVASGLSPGSS-------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------ 148 (502)
T ss_pred HHHHHHHHHHHHccCcc-------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------
Confidence 99999998888764210 00125789999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhcc-----------------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIED-----------------------NKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
|+++.++.+....+|..+++.+..++.. .++||+.|.+.++..++.++..++.
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l 224 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI 224 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888765421 2479999988777665555444333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=201.63 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=146.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..+.+....+..........+.+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~ 82 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFAL 82 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence 3444555555555555555555554 45679999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.+++.+.+ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 83 ~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 131 (385)
T TIGR00710 83 SSLGLALSN-------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIY 131 (385)
T ss_pred HHHHHHHHc-------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHH
Confidence 998888765 57788999999999999999999999999999888 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
++.+...++|..++|.+++++.+..||++.|++.++..++..+..++
T Consensus 132 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 132 SILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899999999877766555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=202.54 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=133.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCCchhhhhHH-----HHHHHHHHHHHhHHHHhhhcccchhHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFM--HFSPSSSANIV-----TNFMGTAFLLALFGGFLADAFFTTYRIYV 101 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~i~~~~~G~laD~~~Grr~~l~ 101 (577)
+|.++...+..+++...+..+....+.+..+++ +.++. .+++. +...++..+++++.|+++||+ |||+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence 456677777788888877765555556666655 67666 34443 233455667888899999997 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh
Q 008106 102 ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 181 (577)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (577)
++.++++++++++++++++..+. ......+++.|+++|++.|+..+....++.|++|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--- 158 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIG-----------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK--- 158 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHH-----------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC---
Confidence 99999999999999876322000 0012358889999999999999999999999999988
Q ss_pred hhchhhhHHHHHHHHhhhhHHHHHHHHHhc--------cccchhHHHHHHHHHHHH
Q 008106 182 RKQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATILL 229 (577)
Q Consensus 182 ~~~r~~~~~~~~~~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~~~~~ 229 (577)
|+...+....+..+|..++..+..++. +.+|||+.|++.++..++
T Consensus 159 ---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 ---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 999999988888999988877766654 357999999987765443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=208.43 Aligned_cols=148 Identities=13% Similarity=0.134 Sum_probs=130.3
Q ss_pred hcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCC
Q 008106 60 FMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 139 (577)
Q Consensus 60 ~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (577)
++|++..+.|++.+.+.+++.++++++|+++||+ |||+.+.++.++.+++.+++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7899999999999999999999999999999997 9999999999998888887755431
Q ss_pred CCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcccc-chhH
Q 008106 140 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQW 218 (577)
Q Consensus 140 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~-gw~~ 218 (577)
.+...+++.|+++|++.+...+....++.|++|+++ |++..++.+.+.++|..++|.+.+++.+.+ |||+
T Consensus 129 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~ 199 (465)
T TIGR00894 129 ---GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199 (465)
T ss_pred ---cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 035678999999999999999999999999999998 999999999999999999999999999884 9999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 008106 219 GFGISTATILLSIPIFLLG 237 (577)
Q Consensus 219 ~f~~~~~~~~~~~~~~~~~ 237 (577)
.|++.++..++..++.+..
T Consensus 200 ~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 200 IFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred ehhhhhHHHHHHHHHHHHH
Confidence 9998887766555444443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=201.38 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASN---LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
-+.++...++.+.+||.+.-+ ..+++.++.++|.+|.|++.+.+.+.+.++-.+.|.++||. +.|+.+-+++++.+
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence 467788888888999988765 46788999999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
+..+++.+++ +...+.+...+.|..+|.-.|.+...++.++|+++ ||+.
T Consensus 106 i~nil~Gfs~-------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~ 154 (448)
T COG2271 106 IVNILFGFSP-------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTW 154 (448)
T ss_pred HHHHHHhhhh-------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCce
Confidence 9999999987 67788888889999999999999999999999999 9999
Q ss_pred HHHHHHHHhhhhHHHHHHH--HHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 189 FNYYVFCLSCGALIAVTFV--VWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~--~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
.++++.+-|+|+++.|.+. +++..+.+||..|++++++.++..++.++.
T Consensus 155 ~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 155 WSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred EEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999998999999999998876655544443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=210.50 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=127.2
Q ss_pred HHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccC
Q 008106 54 VLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDG 133 (577)
Q Consensus 54 ~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (577)
...+.+++|.+.++.+++.+.+.+...++.++.|+++||+ |||+.++.+.++..++++++++++
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 3456689999999999999999998899999999999996 999999999999999998888765
Q ss_pred CCccCCCCCchHHHHH-HHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc
Q 008106 134 IASCREDEGGKAVMLF-AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 134 ~~~~~~~~~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
+.+.++ ..|++.|++.+...+...+++.|+++ ++ |+++.++.+.+.++|..++|.+.+++.+
T Consensus 106 ----------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 106 ----------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred ----------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 445554 45688899988766677778889886 56 9999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 213 NKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 213 ~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
.+|||+.|++.++..++..+..++.
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887766555444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=199.55 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.++...++..+.+..+.+.+|.|++ ++|.|+.+.|++.+.+.++..+++++.|+++||+ |||+.+.++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45788888999999998888888988886 6899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++++++ +.+.+++.|+++|++.+...+...+.+.|..++++ |++.+
T Consensus 84 ~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 132 (381)
T PRK03633 84 GCAGLGLMV-------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLL 132 (381)
T ss_pred HHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 998888765 67788999999999999888888788888888887 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWG 219 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~ 219 (577)
++++...++|..+||.+++.+.+...+...
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 999999999999999999998776444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=197.92 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=138.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.+.+..++..+....+...++.. .+++|.++.+.+++.+.+.+...++.++.|+++||+ ||||++.++.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 346677777888777665554555444 679999999999999999999999999999999997 999999999999998
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.+++.+.. + .++.|+++|++.+...|...+++.|++|+++ |+++.
T Consensus 81 ~~~~~~~~~-------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~ 126 (393)
T PRK11195 81 GCLLMLFGI-------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKAN 126 (393)
T ss_pred HHHHHHHHH-------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 888776653 2 2678999999999999999999999999998 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
++.....++|..+||.++|++.+. .|+..+.+.+...+++.+
T Consensus 127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 477777666554444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=198.52 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=128.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHH-HHHHHHhHHHHhhhcccchhHHHH-HHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIYV-ISAAI 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grr~~l~-~~~~~ 106 (577)
.+..+...+..++..+....+.+.++.|+++++|.|+++.|++.+...+ ...++++.+|+ +||+ ||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence 4456777788899999988899999999999999999999999876655 55566666666 9997 9988754 55555
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHH-HHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG-LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
.+++..+.++++ +.+.+++. +++.+++ +...|....+..|..++++ |
T Consensus 92 ~~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~ 139 (393)
T PRK15011 92 GVLACTLFAWNR-------------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG------R 139 (393)
T ss_pred HHHHHHHHHHhh-------------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc------c
Confidence 556666666654 44454444 4444444 4556777777777766544 4
Q ss_pred --hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 186 --SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 186 --~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+...++.+.+.++|.++||.+++++.++.|||..|++.++..++..+..+.
T Consensus 140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 334467888999999999999999999899999999887766555444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-20 Score=194.02 Aligned_cols=170 Identities=15% Similarity=0.051 Sum_probs=142.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
.+.||++....++.++.....+....+++.++ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||.+..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 44578888999999998888888888888888 57899999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
+..++.+++..... ...+.+.+++.|++.|+|.+...+...+.+.|.+|+++ |
T Consensus 87 ~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~ 139 (402)
T TIGR00897 87 LWCVGHAAFIVFGL---------------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------L 139 (402)
T ss_pred HHHHHHHHHHHHhc---------------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------H
Confidence 99888766533210 00146677889999999988777777788889999888 9
Q ss_pred hhhHHHHHHHHhhhh-HHHHHHHHHhccccchhHHHHHHH
Q 008106 186 SAFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGIST 224 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~-~igp~~~~~l~~~~gw~~~f~~~~ 224 (577)
+++.++++.+.++|. .++|.+++++.+..||+..++...
T Consensus 140 g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 140 SSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 999999999999996 689999999998889766555443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-23 Score=215.34 Aligned_cols=364 Identities=32% Similarity=0.521 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCc
Q 008106 97 YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE 176 (577)
Q Consensus 97 r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (577)
.|++.+|.+++.+|.+++.++...... +++.+...+++++.+.++|.|+.+|+..++++|++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~ 64 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE 64 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc
Confidence 478999999999999998877642211 2233567899999999999999999999999999998
Q ss_pred ccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccccc-CCCCCchhH-H
Q 008106 177 TTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK-IPTGSPLTT-I 254 (577)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 254 (577)
++ +.+|.++++++|++.|+|+.+++.+.+++.+++||.+.|.++.+.++++++.++..+++++++ ++.+++..+ .
T Consensus 65 ~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~ 141 (372)
T PF00854_consen 65 DD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI 141 (372)
T ss_dssp TT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred cc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence 74 345999999999999999999999999999999999999999999999999999999888877 666666666 3
Q ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCC-CCccc-cchhhh
Q 008106 255 FKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPA-YPIVQ-CTVKEV 332 (577)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~ 332 (577)
..++....+++....|.... +++ ...+ .......... ...........+. ..|.. +.++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (372)
T PF00854_consen 142 KLVLVAAFKKRKLAVPKGSS--WLD-------WALF------QYSERSIFGI--IVFIRAAVIFFPEIFFWALFCQVQRV 204 (372)
T ss_dssp HHHHHHHHHHHCCCH-HHHH--HHH-------HHHH------HHCCCCCCCC--CCHHHHHHHHCCCHHHHTTTSSTTTH
T ss_pred HHHHHHHHHHhhcccccchH--HHH-------Hhhh------hhhhhhhhhh--hhhccchhhhhhhhhhcccCCcccee
Confidence 33444444444332221110 111 0000 0000000000 0000000000000 01111 233455
Q ss_pred hHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCc-cccCCCCCCCcChhhhHHHhhhhhhhhhhccccccc
Q 008106 333 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGS-LKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTK 411 (577)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~ 411 (577)
++.+.+.+..+.+.+.+.+.....+...+...+...+++..++ +++|++.+++++++.++++.|+.+++++|+.|+ +
T Consensus 205 ~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~ 282 (372)
T PF00854_consen 205 EELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--G 282 (372)
T ss_dssp HHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---
T ss_pred eeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--c
Confidence 6667777777777778888888888888777777777777777 899999999999999999999999999999983 2
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhcc
Q 008106 412 TEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 491 (577)
Q Consensus 412 ~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~ 491 (577)
+ .++...++.+|++++.+++++.+.++.+|.....+++ ..+.+|.++.+++..++|.+..+...+..+|.
T Consensus 283 ~--~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~ 352 (372)
T PF00854_consen 283 I--QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEF 352 (372)
T ss_dssp -------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred c--cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 2 2788899999999999999998888875543332222 24557888999999999999999999977777
Q ss_pred CCchhHHHHHHHHHHHH
Q 008106 492 APLSMRSLATSLSWASL 508 (577)
Q Consensus 492 ~P~~~rg~~~g~~~~~~ 508 (577)
+|++..+..+|++....
T Consensus 353 a~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 353 APSRAPSSMMGIWFALS 369 (372)
T ss_dssp TTTT-SSSSTHHHHHHH
T ss_pred hHHhhhHHHHHHHHHHh
Confidence 77777777666666543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=197.36 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=129.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHH-HHH-----HHHHHHHHhHHHHhhhcccchhHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIV-TNF-----MGTAFLLALFGGFLADAFFTTYRIYVI 102 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~-~~~-----~~~~~i~~~~~G~laD~~~Grr~~l~~ 102 (577)
++....+.+..+++.+....+. ...+.+.++++.++.+.+.+. +.. .+...+++++.|+++||+ ||||.+..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence 4456666777777777776654 444577789999888765443 222 122246788999999997 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhh
Q 008106 103 SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182 (577)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 182 (577)
+.+++.++.++++++++...+. ......++++|+++|++.|...+....++.|++|+++
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~-----------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---- 150 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIG-----------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR---- 150 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHH-----------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc----
Confidence 9999999999999876311000 0001257899999999999999989999999999998
Q ss_pred hchhhhHHHHHHHHhhhhHHHHHHHHHhc--------cccchhHHHHHHHH
Q 008106 183 KQRSAFFNYYVFCLSCGALIAVTFVVWIE--------DNKGWQWGFGISTA 225 (577)
Q Consensus 183 ~~r~~~~~~~~~~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~ 225 (577)
|++..++.....++|..+++.+++.+. +.+|||+.|++..+
T Consensus 151 --rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 --KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 999999988888888888887776652 46899999987543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=204.25 Aligned_cols=167 Identities=18% Similarity=0.200 Sum_probs=145.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+++.+..+.+..++..+.+..+...+ .++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 95 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 45666677777777777766554444 566789999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
+++.+++.+.+ +.+.+++.|++.|++.++..+...+++.|.+|+++ |++
T Consensus 96 ~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 144 (496)
T PRK03893 96 SVGTLACGFAP-------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK 144 (496)
T ss_pred HHHHHHHHHHh-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 99999888865 67789999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 227 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~ 227 (577)
.+++++.+.++|..++|.+.+++.+.+||++.|++..+..
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998754433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-20 Score=194.34 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=145.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.+|..+++..+.++..+......+.+|. +.+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 4566677777777777776656555654 4579999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.+.+++.|++.|++.+...+....+..|.+++++ |++
T Consensus 84 ~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 132 (394)
T PRK11652 84 ILGTLVALFAH-------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH 132 (394)
T ss_pred HHHHHHHHHHc-------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence 99988887765 57788999999999988877888888889888877 899
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
..+++..+..+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999987765544433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=203.49 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=134.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.++......++.....+.+.+.+ .++.+++|++..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 3445555555556666665554444 466789999999999998889999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++++++ +...+++.|+++|++.+... .....++|++|+++ |+.+
T Consensus 113 ~~~~~~~~~~-------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a 160 (476)
T PLN00028 113 PAVFCMSLVS-------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA 160 (476)
T ss_pred HHHHHHHHhc-------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence 9988888765 56678889999999887654 34567899999988 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhc----c-----ccchhHHHHHHHHHHHHHHHHHHh
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIE----D-----NKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~----~-----~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
.++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..++
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988777888887766655442 2 258999999888766554444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=198.59 Aligned_cols=394 Identities=10% Similarity=0.015 Sum_probs=228.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.+|.+.+..++..++++.+.++++.|+++++|+++.+.+.+.+.+.+...+++++.|+++||+ ||||.+.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3577777888888888888999999999999999999999999999999999999999999997 999999887666555
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..........+. -......+.++.++..+.......+.+.++.++.. .+++..+
T Consensus 89 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~ 143 (420)
T PRK09528 89 LFGPFFIYVFAPL---------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEY 143 (420)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccc
Confidence 4332211100000 00011222223333333333333334444433211 1256677
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCC
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSK 269 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (577)
+..+...++|..++|.+++++.+ .+|+..|++.++..++.++..+..+++.++++..+++
T Consensus 144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 203 (420)
T PRK09528 144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------- 203 (420)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------
Confidence 88888889999999999999876 5899999988776665555544433221110000000
Q ss_pred CCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHH-HHh
Q 008106 270 NSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIF-MST 348 (577)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 348 (577)
+ +.++ +.....+.. . .-..+.++...... ...
T Consensus 204 ~-------------------------~~~~----~~~~~~~~~---~---------------~l~~~~~~~l~l~~~~~~ 236 (420)
T PRK09528 204 L-------------------------GANA----SAVSLKDAL---A---------------LLKLPKFWFLVLYVIGVA 236 (420)
T ss_pred h-------------------------hccc----ccccHHHHH---H---------------HccCCCeEeehHHHHHHH
Confidence 0 0000 000000000 0 00011111111111 111
Q ss_pred HHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHH
Q 008106 349 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLIL 428 (577)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 428 (577)
..+.....+.+.++.... .+.... ....+.......+...++.++.+++.|++.+| +.+..+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l 301 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTI 301 (420)
T ss_pred HHHHHHHHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHH
Confidence 111122222222222111 011100 00011222223334445555556665544433 225556666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHH-HHHH
Q 008106 429 SIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWAS 507 (577)
Q Consensus 429 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~-~~~~ 507 (577)
..++.+..++. .++++++...++.+++.....+...+++.+..|++.|++..+. +++.
T Consensus 302 ~~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 360 (420)
T PRK09528 302 MAVRIIGSGFA---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFA 360 (420)
T ss_pred HHHHHHHHHhc---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHH
Confidence 66666655542 2445566667788888877778888999999999999988765 6777
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 508 LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 569 (577)
Q Consensus 508 ~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~ 569 (577)
..+|..+++.+.+.+.+. .++...|...+++.++..++.++..++
T Consensus 361 ~~lg~~ig~~~~G~l~~~-----------------~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 361 KQLGAVFLSTLAGNLYDS-----------------IGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------hCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999888731 245667888888888777776665554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-21 Score=198.45 Aligned_cols=152 Identities=12% Similarity=0.128 Sum_probs=134.2
Q ss_pred HHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccc
Q 008106 53 LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLED 132 (577)
Q Consensus 53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (577)
..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++.+++
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------- 81 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------- 81 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence 34578889999999999999999999999999999999997 999999999999999999988876
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHH-HHHHHhc
Q 008106 133 GIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV-TFVVWIE 211 (577)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp-~~~~~l~ 211 (577)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++| .+.+.+.
T Consensus 82 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 82 -----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred -----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999988 99999999999999999999 5777777
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 008106 212 DNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+..||++.|.+.++..++..+..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 145 ELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHhe
Confidence 8889999998877665554443333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=204.67 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=130.0
Q ss_pred HHhhhhcCCC---chhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc
Q 008106 55 LYLSKFMHFS---PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLE 131 (577)
Q Consensus 55 ~yl~~~lg~s---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 131 (577)
..+.++++++ ..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.++.++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3456789998 88999999999999999999999999997 999999999999999998888875
Q ss_pred cCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc
Q 008106 132 DGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~ 211 (577)
+.+.+++.|++.|++.++..+...+++.|.+|+++ |+...++...+..+|.+++|.++..+.
T Consensus 179 ------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 179 ------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred ------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999998 999999999999999999998877664
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 212 DNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
+ ||+.|++.++..++..+..++.
T Consensus 241 ~---wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 241 D---WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3 9999998877666555554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=200.50 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=127.2
Q ss_pred HHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccc
Q 008106 53 LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLED 132 (577)
Q Consensus 53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (577)
...++++ +|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.+++.+++.+.++..
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 115 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----------- 115 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc-----------
Confidence 3456665 599999999999999999999999999999997 999999999999998888776543110
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc-
Q 008106 133 GIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE- 211 (577)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~- 211 (577)
.+...+.+.|++.|++.|...+.....+.|++|+++ |++++++++...++|+.+++.+.+.+.
T Consensus 116 ----------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 116 ----------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred ----------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 145667888999999999888888899999999998 999999999999999999988877644
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 008106 212 DNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
...|||..|++.++..++..+..+
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456899999988777655443333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=190.83 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH-HHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI-EFMG 110 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~-~~~~ 110 (577)
.+.+.+..++...++-...+++|.|++ ++|+|..+.+++.+.+.+...+++++.|.++||+ ||++.......+ ..+.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 344566666677776667788999985 7899999999999999999999999999999997 985433222111 1111
Q ss_pred HH-HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 111 LL-LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 111 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
.+ +...++ +.+.+++.|.+++.+.+...|...++..|. +++ |++.+
T Consensus 84 ~~~~~~~~~-------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~ 130 (382)
T TIGR00902 84 AAAFSAGAH-------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY 130 (382)
T ss_pred HHHHHHhhh-------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence 11 222232 577888999999988888888887776543 344 88899
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCC
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSK 269 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (577)
+......++|.+++|.+++++.+.+|||..|.+..+..++.+.. +..+++.+ +++++
T Consensus 131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~---~~~~~------------------- 187 (382)
T TIGR00902 131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTIP---PKDAI------------------- 187 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCCC---CCccc-------------------
Confidence 99999999999999999999999999999998766543333322 22222110 00000
Q ss_pred CCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhH
Q 008106 270 NSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTI 349 (577)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (577)
+ ..+. .+..++ .+....|+.+... ....
T Consensus 188 -----------------~--------~~~~------~~~~~~------------------~~~l~~~~~~~~l---~~~~ 215 (382)
T TIGR00902 188 -----------------P--------EDES------QGDSAF------------------IALLKNPMNLRFL---AAVC 215 (382)
T ss_pred -----------------c--------cccc------ccchhH------------------HHHHcChHHHHHH---HHHH
Confidence 0 0000 000000 0001112222211 1111
Q ss_pred HHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHH
Q 008106 350 MLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILS 429 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 429 (577)
+.........++...+.. + . +.++........ ...+...+...+.+++.+| .+.++.+..+.++.
T Consensus 216 l~~~~~~~~~~~~~~~l~--~--~---g~s~~~~g~l~~-~~~~~~i~~~~~~~~l~~r-------~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 216 LIQGAHAAYYGFSAIYWQ--A--A---GISASATGLLWG-IGVLAEIIIFAFSNKLFQN-------CSARDLLLISAIAC 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHH--H--C---CCCHhHHHHHHH-HHHHHHHHHHHHhHHHHhh-------CCHHHHHHHHHHHH
Confidence 122222222232222111 1 1 111111111111 1222222223333344444 45556677888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHH-HHH
Q 008106 430 IVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW-ASL 508 (577)
Q Consensus 430 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~-~~~ 508 (577)
.+..+.++..+ +++.++...++.++..+...+....++.+. |++.|++++++++ ...
T Consensus 281 ~~~~~~~~~~~---------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~ 338 (382)
T TIGR00902 281 VGRWAIIGAIE---------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAM 338 (382)
T ss_pred HHHHHHHHhHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHH
Confidence 88877666532 556666677999999999999999999988 9999999999987 567
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHH
Q 008106 509 AMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLH 562 (577)
Q Consensus 509 ~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~ 562 (577)
.+|..+++.+.|.+.+. .+. ..|+..++++++++++
T Consensus 339 g~g~~~g~~~~G~l~~~-----------------~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 339 GGLIAIFTAFAGFIYPT-----------------LGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHh-----------------ccH-HHHHHHHHHHHHHHHH
Confidence 79999999999998731 122 4688888888766544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-19 Score=188.73 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=131.4
Q ss_pred hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCc
Q 008106 57 LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 136 (577)
Q Consensus 57 l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (577)
+.+++|.+..+.++..+.+.++..+++++.|+++||+ |||+++..+.+++.++.+++.+++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------ 102 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------ 102 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence 5779999999999999999999999999999999997 999999999999999999888865
Q ss_pred cCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 137 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 137 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
+.+.++++|+++|++.+...+.....+.|.+|+++ |++.+++.....++|..+||.+++++.+..||
T Consensus 103 -------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw 169 (413)
T PRK15403 103 -------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHW 169 (413)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 67789999999999988766777788899999988 99999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008106 217 QWGFGISTATILLSIPIFL 235 (577)
Q Consensus 217 ~~~f~~~~~~~~~~~~~~~ 235 (577)
|+.|++.++..+++++..+
T Consensus 170 ~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 170 KVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988877666555433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-19 Score=188.10 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHH--hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 008106 42 ENLAYLANASNLVLY--LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAH 119 (577)
Q Consensus 42 ~~~~~~~~~~~l~~y--l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~ 119 (577)
....++......|.+ +++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++.+.+
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE- 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence 333334444444443 6789999999999999999999999999999999997 999999999999998888887765
Q ss_pred ccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhh
Q 008106 120 TRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCG 199 (577)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG 199 (577)
+.+.+++.|+++|++.+...+...+++.|.+|+++ +++.++......++|
T Consensus 93 ------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 93 ------------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALS 142 (401)
T ss_pred ------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHH
Confidence 56788899999999988877888889999999887 888888888888999
Q ss_pred hHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 200 ALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 200 ~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
..++|.+++++.+.+||++.|++..+..++..+..+.
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877766555444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=189.00 Aligned_cols=155 Identities=12% Similarity=0.122 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008106 47 LANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPP 126 (577)
Q Consensus 47 ~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 126 (577)
....+.+|.+. +++|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++..++.+.+
T Consensus 8 ~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~-------- 77 (377)
T PRK11102 8 DMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ-------- 77 (377)
T ss_pred HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc--------
Confidence 34446666665 57999999999999999999999999999999997 999999999999999999988765
Q ss_pred CcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHH
Q 008106 127 TCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 206 (577)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~ 206 (577)
+.+.+.+.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+
T Consensus 78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998999999999999988 9999999999999999999999
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHHH
Q 008106 207 VVWIEDNKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 207 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
++++.+..||++.|++.++..++..+..
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 135 GGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999998999999998776665554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=190.63 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
..+..+.+..+...+........+| .+++++|.++.+.+++.+.+.++..+++++.|+++||+ ||||++.++..++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3455666666666666655555555 45899999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.+++...... .+...++++|+++|+|.|...+..++++.|..|+++ |...+
T Consensus 104 ~~~l~~~~~~a----------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~ 155 (438)
T PRK10133 104 GAALFWPAAEI----------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL 155 (438)
T ss_pred HHHHHHHHHhc----------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHH
Confidence 99876422100 167889999999999999999999999999876665 66678
Q ss_pred HHHHHHHhhhhHHHHHHHHHhc
Q 008106 190 NYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~ 211 (577)
+..+....+|..+||.+++.+.
T Consensus 156 s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 156 NLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999998877543
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=196.09 Aligned_cols=379 Identities=18% Similarity=0.160 Sum_probs=246.8
Q ss_pred hhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccC
Q 008106 59 KFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 138 (577)
Q Consensus 59 ~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (577)
++++++..+.+++.+++..+..++++++|+++||+ |-|+++.++.++.++++++.+++...
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------------------ 126 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------------------ 126 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 36889999999999999999999999999999997 99999999999999999999987642
Q ss_pred CCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc-cchh
Q 008106 139 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQ 217 (577)
Q Consensus 139 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~-~gw~ 217 (577)
+.+.+++.|+++|++.|..+|+...+.+.+.|+.| |++..++.+.+..+|.+++-.+.|++.+. .||+
T Consensus 127 -----~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~ 195 (466)
T KOG2532|consen 127 -----GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP 195 (466)
T ss_pred -----cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc
Confidence 23478999999999999999999999999999999 99999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCcc
Q 008106 218 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 297 (577)
Q Consensus 218 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (577)
++|++.++..++..+++++...+.+.+++.-++. |. + ..+..+.++ ..
T Consensus 196 sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~-El-~-------~I~~~k~~~-----------------------~~ 243 (466)
T KOG2532|consen 196 SIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEK-EL-K-------YIEKGKSEA-----------------------HV 243 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH-HH-H-------HHHhccccc-----------------------cc
Confidence 9999999888777766665544332222211110 00 0 000000000 00
Q ss_pred CCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHH-HHHHHhHHHHhhhhccchhHHhhhhhccccCCcc
Q 008106 298 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIF-PIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSL 376 (577)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (577)
++ .+..||+.. -..+.++..+ ..+.....++....+.++++.. ...++..
T Consensus 244 ~~-------------------~~~vP~~~i-----~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v~---- 294 (466)
T KOG2532|consen 244 KK-------------------KPPVPYKAI-----LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDVR---- 294 (466)
T ss_pred CC-------------------CCCCCHHHH-----HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCChh----
Confidence 00 011244211 1111111111 1111122222333333333322 1222322
Q ss_pred ccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008106 377 KVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG--TGLILSIVAMAVAALVEIKRKRVAVNSGLVN 454 (577)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~--~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~ 454 (577)
..+.+.+++.+...+...+.+.+.|++.+| ... ....+|+. ++....++.++.+++..
T Consensus 295 --~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~-------------- 354 (466)
T KOG2532|consen 295 --ETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS-------------- 354 (466)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------
Confidence 345666777777888888888888888876 222 23334443 35555555555555432
Q ss_pred CCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 008106 455 SSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPW 534 (577)
Q Consensus 455 ~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~ 534 (577)
-...+..+.....+.+..........-.....-++..+..+|+.+....++..++|.+++.+..
T Consensus 355 ------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~---------- 418 (466)
T KOG2532|consen 355 ------DEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT---------- 418 (466)
T ss_pred ------CCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC----------
Confidence 0111122222222222222222222222223135778999999999999999999999888763
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 535 LFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 568 (577)
Q Consensus 535 ~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~ 568 (577)
+ + +...|+.+|++.+++.++..++|.++..
T Consensus 419 --~-~-t~~eW~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 419 --D-N-TREEWRIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred --C-C-CHHHHHHHHHHHHHHHHHhchheeEeec
Confidence 1 1 3467889999999999999999988853
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-19 Score=187.75 Aligned_cols=180 Identities=8% Similarity=-0.015 Sum_probs=133.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.+|.+....++...++..+.++++.|+++++|.++.+.+++.+.+.+...+++++.|+++||+ |||+.+..+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3478888889999999999999999999999999999999999999999999999999999997 999999988776655
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..........+. ........+.+++++.|++.+...+....+..|..+ + ++..+
T Consensus 81 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~ 135 (396)
T TIGR00882 81 LFAPFFIYVFGPL-----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEY 135 (396)
T ss_pred HHHHHHHHHhhhH-----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccccc
Confidence 4433221100000 000012345566777888888777777666655322 2 34466
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+......++|..+||.+++.+.+ .||+..|++.+++.++..+..+.
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence 67777889999999999998865 59999999887766655444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=196.73 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=161.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.+.+++++..+++..-|.+.... .-.++.+|.+++..|.+.+.+.+.+.+..|+.|+++||+ .||+++.+|..++.
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT 109 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence 4668888999999999999887644 667889999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.++++++. +.+.+.+.|.+.|+|.+...+..+++++|.||+.+ |++.
T Consensus 110 ~Av~~~~fs~-------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~ 158 (493)
T KOG1330|consen 110 LAVFASGFSN-------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRV 158 (493)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHH
Confidence 9999999986 78999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
++++|+++++|.++|.+.++.+.+..+ |||.|.+.+++.++..++.++..
T Consensus 159 ~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 159 LGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred HHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence 999999999999999999999988877 99999998888766655544443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-19 Score=186.32 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=133.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSK-FMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+|.++...+..+..... ..+.+.+...+.+ ++|+|.+|.+++.+.+.+.+.++.++.|++.||+ |.|+++.++.++.
T Consensus 33 ~r~l~~s~~~f~~~F~~-w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~ 110 (462)
T PRK15034 33 RRNLWISVSCLLLAFCV-WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 35555555554444444 4444555556554 8999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.+.+++++++.. +...+...+++.|++.|++ |+.++.....+++++|+++ |++
T Consensus 111 ~i~~~~~~~a~~--------------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~ 163 (462)
T PRK15034 111 IIPCVWLGIAVQ--------------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGS 163 (462)
T ss_pred HHHHHHHHHHHc--------------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHH
Confidence 999998887510 0011678899999999998 7788999999999999999 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhc-----c-------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIE-----D-------------NKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~-----~-------------~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
+.++.....|+|..+++.+...+. + ..+|+..+++.++..++..++.++.
T Consensus 164 A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 164 ALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999986666777765555443321 2 2347777766666555555554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-19 Score=210.46 Aligned_cols=155 Identities=17% Similarity=0.082 Sum_probs=127.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchh--hhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSS--SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~--~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+.+...+++.++.++...+....+..++...++.+... .+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 45666667777777776666666667776677765544 58888899999999999999999997 9999999998877
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
+++.++..+..... +.+.+++.|+++|++.+...+...+++.|++|+++ |++
T Consensus 88 ~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 139 (1146)
T PRK08633 88 VGLTLLIVLAYYLG----------------------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSR 139 (1146)
T ss_pred HHHHHHHHHHHHHc----------------------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chh
Confidence 66665554432111 57789999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDN 213 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~ 213 (577)
+++++..+.++|.++|+.+++++.+.
T Consensus 140 ~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 140 ANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998775
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-18 Score=181.39 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
-...+..+....+.......+| .+.+++|.++.+.++..+.+.++..+++++.|+++||+ |||+.+.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 3444445555555555554554 45678999999999999999999999999999999997 999999999999999988
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++...+ +.+.+++.|+++|++.+...+...+++.|.+|+++ |++..++.
T Consensus 84 ~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 132 (392)
T PRK10473 84 LCSLAE-------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLL 132 (392)
T ss_pred HHHHhC-------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 887764 56678889999999999988899999999999988 99999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
+...++|..++|.+++++.+..||++.|++.++..++..++
T Consensus 133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999887665554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=187.71 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.++...++.+......+...+.+|.++++++|+++.+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456777777788888888888888789999999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+++.+.+. +.+.++++|+++|++.+. .+...++++|++|+++ |++..+
T Consensus 81 ~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~ 129 (366)
T TIGR00886 81 CLWAGLAVQ------------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALG 129 (366)
T ss_pred HHHHHHHhh------------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHH
Confidence 998887641 356788899999999665 4567889999999988 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhcc----------ccchhHHHHH
Q 008106 191 YYVFCLSCGALIAVTFVVWIED----------NKGWQWGFGI 222 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~----------~~gw~~~f~~ 222 (577)
++....++|..+++.+++.+.. ..+||+.|++
T Consensus 130 ~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 130 LAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9887788888888777766543 3489999943
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-19 Score=209.99 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=112.0
Q ss_pred hhhhcCCCc-hhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH--HHHHHHHHHHHHhhccCCCCCCcccccC
Q 008106 57 LSKFMHFSP-SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA--IEFMGLLLLTVQAHTRSLKPPTCVLEDG 133 (577)
Q Consensus 57 l~~~lg~s~-~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (577)
+.++.+.+. ...++..+++.+...++++++|+++||+ |||+++..... +...+..+..+...
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~-------------- 106 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN-------------- 106 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 444444433 3357777789999999999999999997 99998644222 22222222222211
Q ss_pred CCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc
Q 008106 134 IASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN 213 (577)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~ 213 (577)
+.+.+++.|+++|++.+...|...+++.|++|+++ |++++++.+++.++|.++||.++|++.+.
T Consensus 107 ----------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~ 170 (1140)
T PRK06814 107 ----------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS 170 (1140)
T ss_pred ----------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 008106 214 KGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 214 ~gw~~~f~~~~~~~~~~~~~ 233 (577)
.||++.|...++..++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 171 GNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 99999885444444444433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=185.49 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=140.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc----cchhHH-HHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF----FTTYRI-YVI 102 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grr~~-l~~ 102 (577)
++|+.+.++...+......+.....+|.+++ +.|.+.++.+... ..... .++.++.|.++||+ +||||. +.+
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence 4556777888888888888888888899976 5699988888862 22222 36889999999993 288885 667
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhh
Q 008106 103 SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182 (577)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 182 (577)
+.+...++..++++.+. ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 87 ~~i~~~~~~~~~a~~~~----------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEP----------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---- 140 (491)
T ss_pred HHHHHHHHHHHHHHcCC----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence 77777777777776531 1156778888999999999999999999999999988
Q ss_pred hchhhhHHHHHHHHhhhhHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHH
Q 008106 183 KQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 183 ~~r~~~~~~~~~~~~lG~~igp~~~~~l~~-~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
|+++.++...+.++|..+++.+.+++.+ ..|||..|++.++..++..+..+
T Consensus 141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 57999999988876665544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=183.75 Aligned_cols=391 Identities=13% Similarity=0.101 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccch-hHHHHHHHHHHHHHHH
Q 008106 34 FVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT-YRIYVISAAIEFMGLL 112 (577)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-r~~l~~~~~~~~~~~~ 112 (577)
-+.+..++.+.++-...+.++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++.++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 355566677777777779999999999999999999999999999999999999999996 65 7788888877777777
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCccc--chhhhchhhhHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT--QLGRKQRSAFFN 190 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~ 190 (577)
+..+.+ +.+.+++.|++.+++.+...+...+...+...++. ....-.|.+.++
T Consensus 85 ~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G 139 (418)
T TIGR00889 85 FAAQVT-------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG 139 (418)
T ss_pred HHHHhc-------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh
Confidence 776654 46677788888888877666655554322221000 000001445444
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCC-CchhHHHHHHHHHHHhhccCC
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTG-SPLTTIFKVLTAAIFNTCKSK 269 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (577)
++|.++||.+++.+....+|. +|++.++..++..+..+. .++.++.++++ ++..+
T Consensus 140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~---------------- 195 (418)
T TIGR00889 140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKV---------------- 195 (418)
T ss_pred ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHH----------------
Confidence 378889999998884433454 455555544444433322 22211100000 00000
Q ss_pred CCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhH
Q 008106 270 NSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTI 349 (577)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (577)
....++. +..+.++.... .....
T Consensus 196 ------------------------------------~~~~~~~------------------~~~k~~~~~~~---~~~~~ 218 (418)
T TIGR00889 196 ------------------------------------MLGLDAF------------------ILFKNKRMAIF---FFFSM 218 (418)
T ss_pred ------------------------------------HhhhhHH------------------HHhcCCCeeeH---HHHHH
Confidence 0000000 00000111111 11111
Q ss_pred HHHhhhhccchhHHhhhh--hccccCC-cccc-CCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHH
Q 008106 350 MLNCCLAQLSTFSVQQAA--TMNTKLG-SLKV-PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG 425 (577)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~--~~~~~l~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 425 (577)
+..........++..+.. +.+...+ ++.. ..+.......+..+++..+.+++.|++.+ ++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~-----------r~~l~~~ 287 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI-----------KKVMLLS 287 (418)
T ss_pred HHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------HHHHHHH
Confidence 111111011111111110 1000000 0000 01112222333334444445555444433 3346666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHH
Q 008106 426 LILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSW 505 (577)
Q Consensus 426 ~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~ 505 (577)
.++..+++.+..... ....+.+.++...++.+++++...+....++.+.+|++.|++++|+.+
T Consensus 288 ~~~~~v~~~l~~~~~-----------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 288 LVAWALRFGFFAYGD-----------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred HHHHHHHHHHHHHcC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 666666654444311 000122334556788899998888998999999999999999999997
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 506 -ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 506 -~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
....+|..+|+.+.+.+.+... ..+..+|+..|.+.+++.+++.+.++++.++.
T Consensus 351 ~~~~~lg~~iGp~l~G~l~~~~g-----------~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 351 LMCNGFGSLLGYILSGVMVEKMF-----------AYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc-----------cccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6778999999999998874220 00112467788888888888888887777654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=176.87 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchh----HHHHHHHHHHHHHHHHH
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY----RIYVISAAIEFMGLLLL 114 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr----~~l~~~~~~~~~~~~l~ 114 (577)
.++..+++..+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|.++||+ ||| +.+.++..+. . ...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~-~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--A-VAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--H-HHH
Confidence 45555666777788999995 6899999999999999999999999999999997 984 3333222211 1 111
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 194 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (577)
.... .+.+.+++.|++.|++.+...+...++..|+ .++ |++.++....
T Consensus 88 ~~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~ 135 (382)
T PRK11128 88 WFGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRL 135 (382)
T ss_pred HHhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHH
Confidence 1211 1577888899999999888888887777765 234 7788888888
Q ss_pred HHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008106 195 CLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSI 231 (577)
Q Consensus 195 ~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (577)
..++|..+||.+++++.+++|||..|++.++..++..
T Consensus 136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999987776544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=183.49 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhH-HHHHHHHHHHHHHHHH
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYR-IYVISAAIEFMGLLLL 114 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~-~l~~~~~~~~~~~~l~ 114 (577)
.+..++....+..+++.|+++++|+++.++|.+.++..+...+..++.|+++||. +|||| .+.++....+++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 4556666677778899999999999999999999999999999999999999983 38855 5667777788777777
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCC-cccchhhhchhhhHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD-ETTQLGRKQRSAFFNYYV 193 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~ 193 (577)
...++.. .......+.+.+++.+++.+.......++..|..+ +++ |++..++..
T Consensus 88 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~ 142 (437)
T TIGR00792 88 FTTPDFS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRR 142 (437)
T ss_pred HhCCCCC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHH
Confidence 6643211 01135566777788888888877788888899885 455 899999888
Q ss_pred HHHhhhhHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHHHHHh
Q 008106 194 FCLSCGALIAVTFVVWIE-------DNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~-------~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
...++|..+++.+.+.+. +..||++.+.+.+++.++...+.+.
T Consensus 143 ~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 143 FGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 888888877766655443 2468999988887766655544443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=181.71 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcC--CCchhhhhHHHH--H---HHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 008106 42 ENLAYLANASNLVLYLSKFMH--FSPSSSANIVTN--F---MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL 114 (577)
Q Consensus 42 ~~~~~~~~~~~l~~yl~~~lg--~s~~~~~~~~~~--~---~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~ 114 (577)
+....+.+. ....++.++.. .++++.+.+.+. + .+...+++++.|+++||+ ||||.+.++.++..++.+++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 344444333 34455555543 445555554433 2 233346889999999997 99999999999999999998
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 194 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (577)
+++++.+.. .......+++.|+++|++.+...+...+++.|.+|+++ |+...++.+.
T Consensus 83 ~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 139 (394)
T TIGR00883 83 GLLPSYATI-----------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQV 139 (394)
T ss_pred hhCCChhhh-----------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHH
Confidence 887532210 00012368899999999999999999999999999998 9999999999
Q ss_pred HHhhhhHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHH
Q 008106 195 CLSCGALIAVTFVVWIE--------DNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 195 ~~~lG~~igp~~~~~l~--------~~~gw~~~f~~~~~~~~~~~~ 232 (577)
+..+|..+++.+...+. +.+|||+.|.+.++..++...
T Consensus 140 ~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 140 GAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999999988776653 357899999887766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-18 Score=181.00 Aligned_cols=407 Identities=15% Similarity=0.087 Sum_probs=238.6
Q ss_pred hhhcC--CCchhh----hhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc
Q 008106 58 SKFMH--FSPSSS----ANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLE 131 (577)
Q Consensus 58 ~~~lg--~s~~~~----~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 131 (577)
.+++| .++++. +.+++.+.+++.+++..+|+++||+ |||..+.++.++..++.+++.++...+
T Consensus 46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~---------- 114 (485)
T KOG0569|consen 46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP---------- 114 (485)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 34566 444433 4567788999999999999999997 999999999999999888887765433
Q ss_pred cCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHH--HH
Q 008106 132 DGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV--VW 209 (577)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~--~~ 209 (577)
...+++++|++.|+..|......+.++.|..|.+- ||..-.+..++..+|-.++..++ ..
T Consensus 115 ------------~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~i 176 (485)
T KOG0569|consen 115 ------------SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSL 176 (485)
T ss_pred ------------hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHh
Confidence 67899999999999999999999999999999999 99999999999999999996654 23
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCc
Q 008106 210 IEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESR 289 (577)
Q Consensus 210 l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (577)
+.....|++.+.+..+..++.++...+..+-.+..--++++..+..+. ++ .++ ...
T Consensus 177 lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~s----l~-------------~y~-------G~~ 232 (485)
T KOG0569|consen 177 LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKA----LK-------------FYR-------GKE 232 (485)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHH----HH-------------HHh-------CCC
Confidence 445556999999888877777666655433211110001111111111 11 111 111
Q ss_pred cCCCCCccCCCCCCCCCchhHHHHHHhhcC--CCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhh
Q 008106 290 DEGNSNVKEKVPSQKPTEDIKFLNRALRNN--PAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAA 367 (577)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (577)
|+++. .+......+..... +..++++..+++ ..|+.+...+.+..++..-.+.....++.......
T Consensus 233 ~~~~~-----------~e~~~~e~~~~~~~~~~~~sl~~~~~~~-~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a 300 (485)
T KOG0569|consen 233 DVEAE-----------IEEMLREIEEEELEKKKQISLRQLLKNP-TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA 300 (485)
T ss_pred cchhH-----------HHHHHHHHHHhccccccCCcHHHHhcCc-chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc
Confidence 10000 00000000000000 111111111111 11222222222222222211111111121111111
Q ss_pred hccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 368 TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 447 (577)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~ 447 (577)
++... ...+.........++...+...++|++.||. .+..+..++.+..+.+..........+
T Consensus 301 G~~~~------~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-----------Lll~~~~~~~~~~~~~~~~~~l~~~~~ 363 (485)
T KOG0569|consen 301 GFTPE------EAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-----------LLLISLSLMAVALLLMSIALFLSNSFG 363 (485)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111 0111222223334444445556666666553 244455555555444443322111100
Q ss_pred hhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 448 VNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITS 527 (577)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~ 527 (577)
.-.++..++..+.+.........|..+-+..|++|++.|+.++++....+++++.+-....+.+.+..
T Consensus 364 -----------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~- 431 (485)
T KOG0569|consen 364 -----------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI- 431 (485)
T ss_pred -----------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00111223333344444555567999999999999999999999999999999999999988887422
Q ss_pred cCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 008106 528 TYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSST 575 (577)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~~~ 575 (577)
+. ++|+.+.+.+.+..+..++..+++|+|+.
T Consensus 432 ---------------g~--~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 432 ---------------GP--YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred ---------------cc--hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 11 47889999999999999999999987763
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-18 Score=186.46 Aligned_cols=400 Identities=14% Similarity=0.104 Sum_probs=232.4
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHH
Q 008106 67 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 146 (577)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (577)
+.+++.+...++..+++++.|+++|++ |||+.++++.+++.+|.++++++. +..
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-------------------------~~~ 143 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-------------------------SWY 143 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh-------------------------hHH
Confidence 348999999999999999999999997 999999999999999999999987 688
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc-cchhHHHHHHHH
Q 008106 147 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTA 225 (577)
Q Consensus 147 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~-~gw~~~f~~~~~ 225 (577)
.++++|++.|+|.|+.....+.+++|..|++. |+...+..+...++|..++..++....+. ++||..+.+..+
T Consensus 144 ~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i 217 (513)
T KOG0254|consen 144 QLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALI 217 (513)
T ss_pred HHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999995444444332 489988887776
Q ss_pred HHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCC
Q 008106 226 TILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKP 305 (577)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (577)
..++..+.+++..+..+....+ .+..+..+.+.... . .+ ..+.+ . +.+..+
T Consensus 218 ~~~~~~~~~~~~pesp~~L~~~-g~~~~a~~~l~~l~-g--~~-~~~~~------------------~--~~~~~~---- 268 (513)
T KOG0254|consen 218 PAVILALGMLFLPESPRWLIEK-GRLEEAKRSLKRLR-G--LS-PEDVE------------------V--ELELLK---- 268 (513)
T ss_pred HHHHHHHHHHhCCCChHHHHHc-CChHHHHHHHHHHh-C--CC-CcchH------------------H--HHHHHH----
Confidence 6555555433332111110001 11111111111110 0 00 00000 0 000000
Q ss_pred CchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCC
Q 008106 306 TEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPV 385 (577)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (577)
...............|+++.. ...+|+......+..++..........++....+....+ .+......
T Consensus 269 ---~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~-------~~~~~~~~ 336 (513)
T KOG0254|consen 269 ---IKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLK-------SDTFLASI 336 (513)
T ss_pred ---HHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCC-------CchHHHHH
Confidence 000000000000001211111 112233322222323332211111111111111111111 11111111
Q ss_pred cChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhH
Q 008106 386 FPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLW 465 (577)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (577)
.......++..+...+.|+..|| ..+..+...+.+++++.+.......... +......+..
T Consensus 337 ~~~~v~~~~t~~~~~lvd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 397 (513)
T KOG0254|consen 337 ILGVVNFLGTLVATYLVDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYP--------NSSKGAGWLA 397 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCC--------CcccchhHHH
Confidence 22222333333444666666554 2366677777777776666542221100 0011234444
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchh
Q 008106 466 VALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHL 545 (577)
Q Consensus 466 ~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (577)
++..+++.........|..+.+..|.+|.+.|+++.++....++..+.+-......... +. . .
T Consensus 398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~---------~~-------~-~ 460 (513)
T KOG0254|consen 398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE---------AL-------G-I 460 (513)
T ss_pred HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------hc-------c-c
Confidence 55555666666677778888999999999999999999999998877776665555442 10 0 1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhcccccC
Q 008106 546 ERFYWLMCILGGLNFL-HFLFWAARYKYSST 575 (577)
Q Consensus 546 ~~~f~~~~~l~~l~~v-~~~~~~~~~~~~~~ 575 (577)
...|+.++.++.+..+ +.+++.++++.++.
T Consensus 461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred cchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 2367777777777777 77888888887764
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=173.98 Aligned_cols=391 Identities=13% Similarity=0.052 Sum_probs=252.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 27 GGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
.++|.+++-.+ .+...+..+.+.+.+.+++.+++|+|+.|.+++.....+...+..++-|.+.||+ |.|+...++.++
T Consensus 11 ~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l 88 (417)
T COG2223 11 IARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL 88 (417)
T ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence 34555554444 4444555566777888899999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
..+-++..+++...+ +.+.+++.+++.|++ |+.++...++++++||+++ +|
T Consensus 89 ~~IP~~~~~~a~~~~----------------------~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG 139 (417)
T COG2223 89 LLIPCLGLAFAVTYP----------------------STWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QG 139 (417)
T ss_pred HHHHHHHHHHHccCC----------------------chHHHHHHHHHHhcc-cceehcccccccccCChhh------hh
Confidence 999999999887544 457899999999998 5567888899999999999 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHH
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIF 263 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (577)
.+.+++. ..|+|..+...+..++....| |+....+..+..++..+.+++..++..+.++..++...
T Consensus 140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------- 208 (417)
T COG2223 140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------- 208 (417)
T ss_pred HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------
Confidence 9999999 899999999999999988888 99888888888777777766655443322211111000
Q ss_pred hhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHH
Q 008106 264 NTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (577)
. ..+.+...+..+.+..
T Consensus 209 ----------------------------------------------~-----------------~~~~v~~~~~~W~lsl 225 (417)
T COG2223 209 ----------------------------------------------A-----------------QLKAVFSNKDTWLLSL 225 (417)
T ss_pred ----------------------------------------------h-----------------HHHHHhcCcchHHHHH
Confidence 0 0000111122222211
Q ss_pred HHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHH
Q 008106 344 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423 (577)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~ 423 (577)
+-..+..-++.+....+ .....+++-.....+.+....++...+..++.+++.||+..+. ...
T Consensus 226 lY~~tFG~Fvgfs~~l~------~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----------v~~ 288 (417)
T COG2223 226 LYFATFGGFVGFSAYLP------MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----------VTL 288 (417)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-----------HHH
Confidence 11111111111111111 1112222111223334555566667777788888887777552 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHH
Q 008106 424 TGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL 503 (577)
Q Consensus 424 ~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~ 503 (577)
..+..+.++......... ++....+....+..++.+.+..++.+...+-.+-.++|+ +-|...|+
T Consensus 289 ~~f~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~ 353 (417)
T COG2223 289 AVFVGMALAAALLSLFLT--------------GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGI 353 (417)
T ss_pred HHHHHHHHHHHHHHcccc--------------ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHH
Confidence 444444544444443210 000112333333334444444444444444444444443 56778888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 504 SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 504 ~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
......+|..+-|...+...+.+ +.++..|+++..+.+++.+..+....|.
T Consensus 354 vga~G~lGGf~lp~~~g~~~~~t----------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 354 VGAIGGLGGFFLPLAFGVSLDLT----------------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHHhccccccchhHHHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888877777777766433 3456689999999999988887776665
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=181.18 Aligned_cols=357 Identities=16% Similarity=0.151 Sum_probs=229.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.+..+....+..+++......-++-++. ++.-|+...+++..+..+...+..+++|.++||+ .|||+++.+-++.++.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 3445556666666666555444554444 5567888899999999999999999999999997 9999999999988776
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
...+++..... ..+.+.+++.-++.|++.+...|+..+++.|..|+++ ..++.+
T Consensus 89 ~~~L~~l~~~~--------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a 142 (524)
T PF05977_consen 89 ALLLAVLAFFG--------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA 142 (524)
T ss_pred HHHHHHHHHhC--------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence 66555433211 1267788888899999999999999999999999998 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCC
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKN 270 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (577)
+.....|+.-.+||.++|.+....|-.+.|.+.++..++.+..+...+++.+ +++.+.....+-+.
T Consensus 143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~----------- 208 (524)
T PF05977_consen 143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALR----------- 208 (524)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHH-----------
Confidence 9999999999999999999998889889999888876665554443332211 11111000000000
Q ss_pred CCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHH
Q 008106 271 SSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIM 350 (577)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (577)
+..+|. ...+.+...+. ...+
T Consensus 209 ------------------------------------~G~ryv--------------------~~~~~l~~~l~---~~~~ 229 (524)
T PF05977_consen 209 ------------------------------------EGLRYV--------------------RSSPPLRSVLL---RSFL 229 (524)
T ss_pred ------------------------------------HHHHHH--------------------hcchHHHHHHH---HHHH
Confidence 000010 00011111111 0111
Q ss_pred HHhhhhccchhHHhhhh-hccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHH
Q 008106 351 LNCCLAQLSTFSVQQAA-TMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILS 429 (577)
Q Consensus 351 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~ 429 (577)
+..+.......+..... .++.. ...-+.+.....++.++++.+..++ .+| .+..+.+..+.++.
T Consensus 230 ~~l~~~a~~aLlPl~a~~~l~~~----a~~yGll~a~~gvGai~Gal~~~~l----~~~-------~~~~~lv~~~~~~~ 294 (524)
T PF05977_consen 230 FNLFASAVWALLPLFARDVLGGG----ASGYGLLLAAFGVGAILGALLLPRL----RRR-------LSSRRLVLLASLLF 294 (524)
T ss_pred HHHhhhHHHHhhhHHHHHHhCCc----HHHHHHHHHHHHHHHHHHHHHHHHh----hcc-------cCcchhhHHHHHHH
Confidence 11111111111111110 11111 1011222333344444444443332 222 23333455566666
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHH
Q 008106 430 IVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA 509 (577)
Q Consensus 430 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~ 509 (577)
+++++.+++. .+.+...+..++.|++.........+...+..|+++||+.++++.+...
T Consensus 295 a~~~~~lal~---------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~ 353 (524)
T PF05977_consen 295 ALALLLLALS---------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF 353 (524)
T ss_pred HHHHHHHhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 6666666553 2455566777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 008106 510 MGYYFSTVLVSIVNN 524 (577)
Q Consensus 510 lg~~~~~~l~~~~~~ 524 (577)
.+..+|..+.|.+.+
T Consensus 354 g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 354 GGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999873
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-17 Score=173.56 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
++.++...+...+.+ ++...+...+++++|.++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 444555555555554 4544455667899999999999999999999999999999999997 99999999999999998
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+++..+...+ +.+.+++.|++.|+|.|...+..++++.+..|+++ |++..++
T Consensus 83 ~l~~~~~~~~----------------------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~ 134 (410)
T TIGR00885 83 FLFWPAAEIM----------------------NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNL 134 (410)
T ss_pred HHHHHHHhhc----------------------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHH
Confidence 8865443111 57789999999999999999999999999999888 8889999
Q ss_pred HHHHHhhhhHHHHHHHHHhccc--------------------------cchhHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDN--------------------------KGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~--------------------------~gw~~~f~~~~~~~~~~~~~ 233 (577)
.+...++|..++|.+++.+... .+||++|.+.+++.++..++
T Consensus 135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877421 36999998777765544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=176.29 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=121.2
Q ss_pred HHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccc
Q 008106 53 LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLED 132 (577)
Q Consensus 53 l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (577)
+...+.+++|++.++.+++.+.+.++..++.++.|+++||+ ||||.+.++.++..++.+.+ ..+
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-------------- 85 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-------------- 85 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc--------------
Confidence 34556789999999999999999999999999999999997 99999999998888877766 433
Q ss_pred CCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc
Q 008106 133 GIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
+.+.+++.|++.|++.+...+..+..+.|.+| ++ |++..++++...++|..+++.+.+.+.+
T Consensus 86 -----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~ 147 (355)
T TIGR00896 86 -----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQ 147 (355)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999888888888888886 46 8999999999999999999999998877
Q ss_pred cc--chhHHHHHHHHHHH
Q 008106 213 NK--GWQWGFGISTATIL 228 (577)
Q Consensus 213 ~~--gw~~~f~~~~~~~~ 228 (577)
.. +||+.|...++..+
T Consensus 148 ~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 148 HSGGHWQQALAWWALPAL 165 (355)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 65 39988876655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-16 Score=167.02 Aligned_cols=167 Identities=11% Similarity=0.108 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc----cchhH-HHHHHHHHHHHH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF----FTTYR-IYVISAAIEFMG 110 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grr~-~l~~~~~~~~~~ 110 (577)
+...+...+.+.....-+|.|++ +.|+|.++.|++...... .+..++.|+++||+ +|||| .+.++.++.+++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 34455566666666777899997 559999999998665554 58889999999995 17765 788888888888
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
..++.+.+. ..+.+.+++..++.++..+...+...+++.|++|+++ |+++.+
T Consensus 82 ~~~l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~ 133 (402)
T PRK11902 82 IAAMAFCPP----------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA 133 (402)
T ss_pred HHHHHhcCc----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence 887776531 1145666666667788888888999999999999998 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHH
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~ 233 (577)
+...+.++|..+++.+.+++.+. .|||..|++.++..++..+.
T Consensus 134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998885 59999999887766554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-17 Score=169.24 Aligned_cols=154 Identities=15% Similarity=0.131 Sum_probs=119.2
Q ss_pred HHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc----cchhHH-HHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008106 52 NLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF----FTTYRI-YVISAAIEFMGLLLLTVQAHTRSLKPP 126 (577)
Q Consensus 52 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~----~Grr~~-l~~~~~~~~~~~~l~~~~~~~~~~~~~ 126 (577)
.+|.+ .+++|+|.++.+++... .+...+ .++.|.++||+ +||||. ++.+.++.+++...+++..+
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------- 79 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------- 79 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-------
Confidence 34444 56889999999998655 344444 88999999996 489997 45667777777666665431
Q ss_pred CcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHH
Q 008106 127 TCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 206 (577)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~ 206 (577)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.++++.+
T Consensus 80 ---------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l 138 (356)
T TIGR00901 80 ---------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSL 138 (356)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHH
Confidence 1145556666667788888888999999999999988 9999999999999999999999
Q ss_pred HHHhccccc--------hhHHHHHHHHHHHHHHHHHHh
Q 008106 207 VVWIEDNKG--------WQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 207 ~~~l~~~~g--------w~~~f~~~~~~~~~~~~~~~~ 236 (577)
++++.+..| ||..|++.++..++.++..++
T Consensus 139 ~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 139 ALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999988888 999999888876665554443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=158.02 Aligned_cols=119 Identities=10% Similarity=0.081 Sum_probs=106.8
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCC
Q 008106 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 140 (577)
Q Consensus 61 lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (577)
.+.+..-+|.+-+.|++.+++.++..|.+||++ |||.++.++.+..++...+++.+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~---------------------- 119 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR---------------------- 119 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 334445568888899999999999999999998 999999999999999999999887
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc
Q 008106 141 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 141 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
+...+.++|++.|+..|-. ..+.++++|.+++++ |+.+++.......+|.++||.++|++.+
T Consensus 120 ---~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 ---NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ---HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5667778899999998876 566799999999998 9999999999999999999999999988
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-15 Score=151.55 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
-...+.+.|+...........+.+.+++.++++..|++.+..++..++.+++++.|++.+|+ |+|+.+++|+.++++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~ 92 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGA 92 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 34444444444444455666788889999999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
.+..-+++.. ++..+.++.++.+.|.+....+.++++....+++. -..-+++
T Consensus 93 ~lF~pAa~~~----------------------~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl 144 (422)
T COG0738 93 ALFWPAASSK----------------------SYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNL 144 (422)
T ss_pred HHHhhhhhhh----------------------hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHH
Confidence 9886444322 67889999999999999999999999999999876 5666777
Q ss_pred HHHHHhhhhHHHHHHHHHhcc
Q 008106 192 YVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~ 212 (577)
.+....+|++++|++++++..
T Consensus 145 ~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 145 AQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHH
Confidence 888889999999999998876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-15 Score=158.04 Aligned_cols=441 Identities=12% Similarity=0.049 Sum_probs=245.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhc----ccchhHHHHHH-HH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADA----FFTTYRIYVIS-AA 105 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grr~~l~~~-~~ 105 (577)
+++.+..+.+.-++++-...++++.|+ +++|.+....+.+..+..+...+.+++.|+++|| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 467777777888888877778888876 6899999999999999999999999999999994 6 999998875 55
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
...++.++++++++...+.. +...+.......+..+++..+.-++.....+...++++|.+|+++. ++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~--------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~ 150 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFG--------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RT 150 (477)
T ss_pred HHHHHHHHHHhCchhhhhcc--------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HH
Confidence 55566667666543211110 0000000001123445555556667777778889999999998861 02
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHh--cccc-------------chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCc
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWI--EDNK-------------GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSP 250 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l--~~~~-------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (577)
+.+.++.+...++|..+|+.++++. .+.. +.+..|++.++..++...+..+..+|.+..++++.+
T Consensus 151 ~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~ 230 (477)
T TIGR01301 151 RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence 5788999999999999999988865 2211 568899988887777766655544432211111000
Q ss_pred hhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchh
Q 008106 251 LTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVK 330 (577)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (577)
.+ +.+ +.++ .+....+.+. | +
T Consensus 231 -~~---------------------------------~~~------~~~~------~~~~~~~~~i--------~-----~ 251 (477)
T TIGR01301 231 -NS---------------------------------EAA------PPSK------HGEEAFFGEL--------F-----G 251 (477)
T ss_pred -hh---------------------------------hcc------cccc------cchhhhHHHH--------H-----H
Confidence 00 000 0000 0000000000 0 0
Q ss_pred hhhHH-HHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCC------CCcChhhhHHHhhhhhhhhh
Q 008106 331 EVEEV-KIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASL------PVFPVIFILILAPVYNHVII 403 (577)
Q Consensus 331 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~ 403 (577)
...+. |.+.++.....+.-+-|..+....+.+.-+..+-..+ . .+..+ .........+...+.+.+..
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~----~-~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~ 326 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSV----N-QGAKYDDGVRAGAFGLMLNSVVLGITSIGME 326 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCC----c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 1111111111222222222222223222211000000 0 00011 01111111112223344444
Q ss_pred hcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccee-hhHHHHHHHHHHHHHHHHHh
Q 008106 404 PFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT-FLWVALQYLFLGSADLFTLA 482 (577)
Q Consensus 404 ~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~p 482 (577)
++.||...+ +.....+.++.++++....+......+.. +.+-.+.--..+.. .+..+..+.+.|+.......
T Consensus 327 ~l~~~~g~~------k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 327 KLCRGWGAG------KRLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 445553211 12235677777777777766542110000 00000000011122 36677788999999999999
Q ss_pred hhHHHhhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHH
Q 008106 483 GMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNF 560 (577)
Q Consensus 483 ~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~ 560 (577)
..++++.+..|++ ..|..+|+.|++--+...+.....+.+.+.. . ++-...+.+-++.++++.
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~---------g------~~~~~~~~~~gv~~~~aa 464 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLF---------G------GGNLPAFVVGAVAAFVSG 464 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHc---------C------CCCeeHHHHHHHHHHHHH
Confidence 9999999999954 4599999999999999999888777754322 1 122236677777777777
Q ss_pred HHHHHHhhhcc
Q 008106 561 LHFLFWAARYK 571 (577)
Q Consensus 561 v~~~~~~~~~~ 571 (577)
+..++..++.+
T Consensus 465 ~~~~~~~~~~~ 475 (477)
T TIGR01301 465 LLALILLPRPR 475 (477)
T ss_pred HHHHHhCCCCC
Confidence 77777666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=154.20 Aligned_cols=177 Identities=13% Similarity=-0.042 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHH--HHHHHHHHHHHhHH-HHhhhcccchhHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIV--TNFMGTAFLLALFG-GFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~--~~~~~~~~i~~~~~-G~laD~~~Grr~~l~~~~~~~~ 108 (577)
...+....+.+.+.+....+.+|.|++ +.|.|.++.|.+. ........+.+++. ++.+||+ ||||..++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 456666777888888888889999986 6699999999973 45566665555555 7789996 99999766654322
Q ss_pred H-HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 109 M-GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 109 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
. ....+.... + . ......++....+.++..+...+....+..|..++++ ++.
T Consensus 81 ~~~~~~~~~~~--~------------------~-~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~ 133 (390)
T TIGR02718 81 SACLASLALVG--P------------------D-VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAK 133 (390)
T ss_pred HHHHHHHHcCC--c------------------c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhH
Confidence 2 222222111 0 0 0012233334444556666666666666667766665 777
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
..+....+..+|..+|+...+++.+..|||..|++.++..++..+..++.
T Consensus 134 ~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 134 GNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777888899999999889999999999999998887766555544433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-15 Score=158.31 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhH-HHHHHHHHHHHHHH
Q 008106 37 AVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYR-IYVISAAIEFMGLL 112 (577)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~-~l~~~~~~~~~~~~ 112 (577)
+..+..+..+..+..+++.|+++.+|+++.++|.+.....+...+..|+.|+++||. +|||| .++++.+..+++..
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 445666666677778899999999999999999999999999999999999999993 38754 55567677777665
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCc-ccchhhhchhhhHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE-TTQLGRKQRSAFFNY 191 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~ 191 (577)
++...++.+ .....+.+++..++.+.+..+......++.+|+.++ ++ |.+..++
T Consensus 96 l~f~~p~~~-------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l~~~ 150 (444)
T PRK09669 96 LTFYTPDFG-------------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSLQSW 150 (444)
T ss_pred HHHhCCCCC-------------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHHHHH
Confidence 554432111 112345555555666666667777788999999854 44 8888888
Q ss_pred HHHHHhhhhHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIED-------NKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
.....++|..+++.+...+.. ..||+..+.+.+++.++...+.+
T Consensus 151 r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 151 RFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 888888888777665433321 34677777766665554444333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-14 Score=157.31 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=127.5
Q ss_pred hhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCcc
Q 008106 58 SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASC 137 (577)
Q Consensus 58 ~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (577)
.+..+.+........+.+.++..+++++.|+++|++ |||++++++.++..++.++.++++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~------------------- 169 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP------------------- 169 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence 356777888889999999999999999999999995 999999999999999999999987
Q ss_pred CCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchh
Q 008106 138 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 217 (577)
Q Consensus 138 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~ 217 (577)
+.+.+++.|++.|++.++...+...+++|++++++ |+...++ ......++.+++.+.+++.. +||
T Consensus 170 ------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr 234 (521)
T KOG0255|consen 170 ------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWR 234 (521)
T ss_pred ------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHH
Confidence 78899999999999999999999999999999999 9999999 88888899999999999877 799
Q ss_pred HHHHHHHHHHHHHHHH
Q 008106 218 WGFGISTATILLSIPI 233 (577)
Q Consensus 218 ~~f~~~~~~~~~~~~~ 233 (577)
+.+++..+..++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 235 WLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887776655555
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-15 Score=157.90 Aligned_cols=396 Identities=12% Similarity=0.119 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhh----cccchhHHH-HHHHHHHHHHHHH
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLAD----AFFTTYRIY-VISAAIEFMGLLL 113 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Grr~~l-~~~~~~~~~~~~l 113 (577)
.+..++.......+++.|+++.+|+++...+.+.....+...+..|+.|+++| |+ ||||.. +++.+..+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35555666666678889999999999999999999999999999999999999 76 976654 4677777787777
Q ss_pred HHHH-hhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 114 LTVQ-AHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 114 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
+... +... +.......+.+..++..++.........++..|..++.+ +|.+..++-
T Consensus 89 lf~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~ 145 (428)
T PF13347_consen 89 LFSPPPAGL------------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWR 145 (428)
T ss_pred hhccccchh------------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHH
Confidence 7654 2000 111134445666677788999999999999999998654 289998888
Q ss_pred HHHHhhhhHHHHHHHHHhcc----c---cchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhh
Q 008106 193 VFCLSCGALIAVTFVVWIED----N---KGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNT 265 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~----~---~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (577)
.....+|..+...+.+.+.+ . .+|++...+.+++.++...+.++..|+.+.+++++++
T Consensus 146 ~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~--------------- 210 (428)
T PF13347_consen 146 MIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK--------------- 210 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------
Confidence 88888888655555554432 2 1688887777776666555555544430000000000
Q ss_pred ccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHH
Q 008106 266 CKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIF 345 (577)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (577)
. .+ +.+ .++... ++ |.... +.
T Consensus 211 ---------------------------------~---~~------~~~---------~~~~~~----~n-r~~~~---l~ 231 (428)
T PF13347_consen 211 ---------------------------------K---IS------LRD---------SLRSLF----RN-RPFRI---LL 231 (428)
T ss_pred ---------------------------------c---cc------ccc---------chhhhc----cc-chHHH---HH
Confidence 0 00 000 000000 11 11111 11
Q ss_pred HHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHH
Q 008106 346 MSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG 425 (577)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 425 (577)
....+.+.......+...++....-.+ -+ ..+.+.....+..++..++..++.+++.+| +.+..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~---~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~ 296 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVLGN---EG-LISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIG 296 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhcC---ch-hhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhh
Confidence 222222222222222222221111111 00 111222233344444555555554333322 336667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCc-------hhHH
Q 008106 426 LILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPL-------SMRS 498 (577)
Q Consensus 426 ~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~-------~~rg 498 (577)
..+..++.++..+.. ..+.+++.+..++.+++.+...+..+++..|..+. +..|
T Consensus 297 ~~~~~~~~~~~~~~~-------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g 357 (428)
T PF13347_consen 297 LLLAALGFLLLFFLG-------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG 357 (428)
T ss_pred HHHHHHHHHHHHHHH-------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence 777777777666642 13667788888999999999999999999998873 4579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 499 LATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 499 ~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
...|++++...++..+++.+.+.+......+.+.. +............++.+.++..++..+..++|+
T Consensus 358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~-----~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~ 425 (428)
T PF13347_consen 358 MYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAA-----VQSASALSGIRILFSIVPAIFLLLAIIFMRFYP 425 (428)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcC-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998876542211110 122233444445555555555555555666554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-20 Score=201.22 Aligned_cols=139 Identities=22% Similarity=0.298 Sum_probs=116.9
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHH
Q 008106 67 SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAV 146 (577)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (577)
+.+++.+...++..++.+++|+++||+ |||+++.++.++..++.++..+++.. .+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~ 103 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY----------------------NNFW 103 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc----------------------cccc
Confidence 357888999999999999999999997 99999999999999999999887621 1467
Q ss_pred HHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc---ccchhHHHHHH
Q 008106 147 MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---NKGWQWGFGIS 223 (577)
Q Consensus 147 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~---~~gw~~~f~~~ 223 (577)
.+.++|++.|++.|+..+..+.++.|..|++. |+...++.+....+|..++..+.-.+.+ ..+||..+.+.
T Consensus 104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999998 9999999999989998888766544433 24599998888
Q ss_pred HHHHHHHHHHH
Q 008106 224 TATILLSIPIF 234 (577)
Q Consensus 224 ~~~~~~~~~~~ 234 (577)
.+..++.++..
T Consensus 178 ~~~~l~~~~~~ 188 (451)
T PF00083_consen 178 AIPSLLVLLLR 188 (451)
T ss_pred ccccccccccc
Confidence 77665444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-14 Score=151.48 Aligned_cols=155 Identities=12% Similarity=0.086 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhHHH-HHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYRIY-VISAAIEF 108 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~~l-~~~~~~~~ 108 (577)
+.-.+..+..++.+..+..+++.|+++.+|+++.++|.+.....+...+..++.|+++||. +||||.. .++.+...
T Consensus 11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~ 90 (448)
T PRK09848 11 VGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLM 90 (448)
T ss_pred HhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHH
Confidence 3334566677777777778888999999999999999999999999999999999999994 3777754 55555555
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
+...++...+. .. ......+..++..++.+++.+...+...++..|..++.+ +|.+.
T Consensus 91 ~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~ 147 (448)
T PRK09848 91 IFSVLVFWVPT-DW-----------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARL 147 (448)
T ss_pred HHHHHHHhCcC-CC-----------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHH
Confidence 44444322110 00 011133444555566788888888877888777776643 16666
Q ss_pred HHHHHHH-----HhhhhHHHHHHHHHh
Q 008106 189 FNYYVFC-----LSCGALIAVTFVVWI 210 (577)
Q Consensus 189 ~~~~~~~-----~~lG~~igp~~~~~l 210 (577)
.++-.++ .+++..++|.+.+..
T Consensus 148 ~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 148 GAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5554433 345666677666543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-14 Score=151.82 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=119.7
Q ss_pred HHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc
Q 008106 52 NLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLE 131 (577)
Q Consensus 52 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 131 (577)
....+..+++|-+ ....|+.+...+...+..++.|.++|.| |||..++.+.++..+|.+.++.++
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------- 129 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------- 129 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence 3456888899965 5668888899999999999999999996 999999999999999999999876
Q ss_pred cCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc
Q 008106 132 DGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~ 211 (577)
+...++++..+.|+|.|... .....++|..|.+. |..+..+.....-.....+|.+...+.
T Consensus 130 ------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 ------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred ------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 67789999999999987765 44566899999877 877776666555555556777776676
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 008106 212 DNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 212 ~~~gw~~~f~~~~~~~~~~~~ 232 (577)
.+.+|||.|++.++...++++
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHH
Confidence 677899999988876555544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-14 Score=153.85 Aligned_cols=174 Identities=11% Similarity=0.021 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhh----cccch-hHHHHHHHHHHHH
Q 008106 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLAD----AFFTT-YRIYVISAAIEFM 109 (577)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD----~~~Gr-r~~l~~~~~~~~~ 109 (577)
-.+..+..++.+..+..+++.|+++.+|+++..+|.+.....+...+..|+.|+++| |+ || |+.++++.+..++
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i 89 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV 89 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence 335566677777788889999999999999999999999999999999999999999 65 98 5566667777777
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCC-cccchhhhchhhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD-ETTQLGRKQRSAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~ 188 (577)
+.+++...++. ........+.+..++.+++.........++..|+.+ +++ |.+.
T Consensus 90 ~~~llf~~p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l 144 (473)
T PRK10429 90 VLFLLFSAHLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQL 144 (473)
T ss_pred HHHHHHcCCCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHH
Confidence 76666432210 011123445555556677888888888999999995 555 9998
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIED-------NKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
.++-....++|+.+.+.+...+.+ ..||+....+.+++.++.....
T Consensus 145 ~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 145 VPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 888777777776666554443221 1245655555554444433333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-14 Score=150.40 Aligned_cols=155 Identities=13% Similarity=0.070 Sum_probs=137.2
Q ss_pred HHHHHHHhhhhcCCCchh-hhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 008106 50 ASNLVLYLSKFMHFSPSS-SANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128 (577)
Q Consensus 50 ~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (577)
.++...|+.+++|++++| .|.+.+++..++.++.+++|+++||+ |.|+++.++.+..++..++.++..
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 355677999999999999 99999999999999999999999996 999999999999999999999976
Q ss_pred ccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHH
Q 008106 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 208 (577)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~ 208 (577)
+...+.+.|++.|++.|+.. +...++..++|+++ |+++.++...+.++|.++++++++
T Consensus 114 ---------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 114 ---------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999 99999999999999 999999999999999999999999
Q ss_pred HhccccchhHHHH---HHHHHHHHHHHHHHhcC
Q 008106 209 WIEDNKGWQWGFG---ISTATILLSIPIFLLGS 238 (577)
Q Consensus 209 ~l~~~~gw~~~f~---~~~~~~~~~~~~~~~~~ 238 (577)
++ ..+||++-+. ++.....+++++.++++
T Consensus 172 ll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 172 LL-VTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 94 4678886554 44555566666665554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-13 Score=143.60 Aligned_cols=385 Identities=16% Similarity=0.125 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
..+....++..+.+-...++++.|++ +.|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++.++..+
T Consensus 5 ~rLs~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~ 83 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALL 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Confidence 34555566666666667788999996 67899999999999999999999999999999974577888777666666555
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
+....+ +.+.+++..++..+......|...++..+...+ ++.-++-.
T Consensus 84 ~~~~~~-------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~i 130 (400)
T PF03825_consen 84 LLAFSS-------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRI 130 (400)
T ss_pred HHHHhc-------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcc
Confidence 554443 455566666667777777777777777666553 22233333
Q ss_pred HHHHhhhhHHHHHH-HHHhccccc---hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccC
Q 008106 193 VFCLSCGALIAVTF-VVWIEDNKG---WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 268 (577)
Q Consensus 193 ~~~~~lG~~igp~~-~~~l~~~~g---w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (577)
.+..++|-+++.+. .+++....+ ....+++.++..++.....+. .|+.+.++..+++.
T Consensus 131 RlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~----------------- 192 (400)
T PF03825_consen 131 RLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESV----------------- 192 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCc-----------------
Confidence 33444555544332 222222222 233455544433222221111 22111000000000
Q ss_pred CCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHh
Q 008106 269 KNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 348 (577)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (577)
++. ...+. + ++-..|+.... +...
T Consensus 193 --------------------------------~~~------~~~~~---------~------~llk~~~~~~F---ll~~ 216 (400)
T PF03825_consen 193 --------------------------------KKL------LGLDA---------L------KLLKNPRFLVF---LLAA 216 (400)
T ss_pred --------------------------------ccc------cchHH---------H------HHhcCccHHHH---HHHH
Confidence 000 00000 0 00001111111 1111
Q ss_pred HHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHH
Q 008106 349 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLIL 428 (577)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 428 (577)
.+..+...-.+++...+ ++ ++|+ .+... .......+.+......-..+|..+| .+..+.+.++...
T Consensus 217 ~l~~~~~~~~~~f~~~y---l~-~~gg--~~~~~-----~g~~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~ 282 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIY---LQ-ELGG--YSGST-----IGILWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVA 282 (400)
T ss_pred HHHHHHHHHHHHHHHHH---HH-Hccc--chhhH-----HHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence 11111111111211111 11 1111 00011 1111112222232222223333333 5666667777776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHH----HHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHH
Q 008106 429 SIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV----ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 504 (577)
Q Consensus 429 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~ 504 (577)
.++=..+++... .+++.. .....+.|+..++.......|+.+.+|++.|+++++++
T Consensus 283 ~~vR~~l~a~~~--------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~ 342 (400)
T PF03825_consen 283 YAVRWLLYAYFS--------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLY 342 (400)
T ss_pred HHHHHHHHHHhc--------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 666666665531 122222 22235799999999999999999999999999999998
Q ss_pred HH-HHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 505 WA-SLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 505 ~~-~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
.. ..++|..+|..+.|.+.+.... + ....+..++.+.+++.++..+++++..|+.
T Consensus 343 ~~~~~Glg~~iG~~igG~l~~~~g~--------~---~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 343 SALSFGLGGAIGSLIGGWLYDAFGA--------R---GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcc--------h---hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 85 4679999999999998853210 0 001233456677777777777777765554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=168.95 Aligned_cols=205 Identities=15% Similarity=0.163 Sum_probs=153.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 27 GGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
.++|.+.+.+....+....+.+........++++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3345444444445555556667777777888999999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHHhhccCCC----------------CCCcccc-------cCCC-ccCCCC--CchHHHHHHHHHHHHhhcc
Q 008106 107 EFMGLLLLTVQAHTRSLK----------------PPTCVLE-------DGIA-SCREDE--GGKAVMLFAGLYIVALGVG 160 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~----------------~~~~~~~-------~~~~-~~~~~~--~~~~~~l~~~~~l~g~g~g 160 (577)
++++.++.++++...... ...|-+. +..+ .|.+.+ ......++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 999999998865221000 0011000 0000 112111 1245678899999999999
Q ss_pred cccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcccc----------------------chhH
Q 008106 161 GIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK----------------------GWQW 218 (577)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~----------------------gw~~ 218 (577)
...+...+++.|.+|+++ |+..+++++....+|.++|+++++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999998 999999999999999999999999887532 2777
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 008106 219 GFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 219 ~f~~~~~~~~~~~~~~~~~~ 238 (577)
+|++.+++.++..+.+++..
T Consensus 262 ~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 88887776665554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=149.88 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=136.3
Q ss_pred hhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccC
Q 008106 59 KFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 138 (577)
Q Consensus 59 ~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (577)
+.++-++++.|++.+...+.+.+..++.|.+.||+ |+|-.+++|+.+....+++.++..
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~-------------------- 157 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN-------------------- 157 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence 35667788899999999999999999999999996 999999999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhH
Q 008106 139 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQW 218 (577)
Q Consensus 139 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~ 218 (577)
++++++++|.++|+|.++...+..++++|.||++. +|++.+|..-....+|-.+||.++|.+.|..|++.
T Consensus 158 -----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~a 227 (464)
T KOG3764|consen 158 -----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSA 227 (464)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcC
Confidence 57789999999999999999999999999999876 38999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 008106 219 GFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 219 ~f~~~~~~~~~~~~~~~~~~~ 239 (577)
+|++.+++.++...+-++..+
T Consensus 228 PFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 228 PFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred cHHHHHHHHHHHHHHHHheeC
Confidence 999998887776666555443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=142.96 Aligned_cols=171 Identities=13% Similarity=0.059 Sum_probs=125.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+|..+.....+..+. ...|++. .....+++++|++..+.+++.+... ...++.+++|+++||+ |||+++.++.+++
T Consensus 26 Rw~~lva~~~~~~~~-g~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~ 101 (591)
T PTZ00207 26 RFALLVLGAFCSICT-SFMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF 101 (591)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 343333333333333 3334443 4456788999999999999887643 3445677889999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
++++++++++.+.. + ..+.+.+.+.|++.|+|.+...+.....+.++|| ++ |+.
T Consensus 102 ~iG~ll~ala~~~~-i------------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~ 155 (591)
T PTZ00207 102 CLGTLLFALTFQEV-I------------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGA 155 (591)
T ss_pred HHHHHHHHHHhccc-c------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHH
Confidence 99999998863100 0 1267889999999999999888888889999997 55 899
Q ss_pred hHHHHHHHHhhhhHH-HHHHHHHhccccchhHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWGFGISTATILLS 230 (577)
Q Consensus 188 ~~~~~~~~~~lG~~i-gp~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (577)
..++......+|+++ +++..+++. .+|+..|++.++..++.
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 999999999999975 555555554 35777777665554443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=149.75 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=124.1
Q ss_pred CcchhHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcC-------CCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchh
Q 008106 28 GMLAACFVLAVEVL---ENLAYLANASNLVLYLSKFMH-------FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY 97 (577)
Q Consensus 28 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~yl~~~lg-------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr 97 (577)
.|+.+-.+.++.+. +....+.+....+.+-.-..| .++...+.+..+..++..++|++.||++||+ |||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence 35555555555444 444444444444444333333 4455667888889999999999999999997 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcc
Q 008106 98 RIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDET 177 (577)
Q Consensus 98 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (577)
+++...+++..+++++++++. |+++...-.+.+...|+++|+|.|+-+|...+..+|..-+.
T Consensus 115 ~vYG~~liImIi~t~~~~~s~------------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~ 176 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSV------------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK 176 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCC------------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence 999999999999999777654 23333346788999999999999999999999999999888
Q ss_pred cchhhhchhhhHHHH----HHHHhhhhHHHHHHHHHhcccc-----------chhHHHHHHHHHHH
Q 008106 178 TQLGRKQRSAFFNYY----VFCLSCGALIAVTFVVWIEDNK-----------GWQWGFGISTATIL 228 (577)
Q Consensus 178 ~~~~~~~r~~~~~~~----~~~~~lG~~igp~~~~~l~~~~-----------gw~~~f~~~~~~~~ 228 (577)
. ||...+.. .++.-.|++++-++.+...... =||..|.+..+..+
T Consensus 177 ~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 177 T------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred c------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 7 87776653 4455556666655554442211 28888877665544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=150.37 Aligned_cols=174 Identities=17% Similarity=0.081 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc-----hhHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT-----TYRIYVISAAI 106 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rr~~l~~~~~~ 106 (577)
..++....+.+.+. +.+...++.++.+++|+++.+.+...+...+...+-++ .|.++|++ + ||+.+.++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34555567778887 77778889999999999999999998888888888666 89999997 7 77777877766
Q ss_pred HH-HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 107 EF-MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 107 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
.. ++...++..++ ......+.+++.+++.+...+...+++.|..+ +++ ..+
T Consensus 105 ~~~~~~~~l~~~~~------------------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~ 156 (468)
T TIGR00788 105 GSAILYGLLPGKVS------------------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAG 156 (468)
T ss_pred HHHHHHHhcccccc------------------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcC
Confidence 53 32222221110 23334446788999999999999999999999 441 124
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+...++.+...++|..+|+.++|++.+.+||+..|++.+++.++..+..++
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 455667777788999999999999999999999999888776666443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-14 Score=152.30 Aligned_cols=420 Identities=15% Similarity=0.090 Sum_probs=253.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASN---LVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
-|.+.++.|+.+...+++... +-..++++++.+.++++|+.++......+..++.+.+.||+ |.|.+.+.|.++.+
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 366677777777777766554 44567889999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHH-HHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGL-YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
+|.++..++. +.+.+++.- ++.|+|.|........+++.+|+++ |+.
T Consensus 123 ~g~~lssF~~-------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~l 170 (509)
T KOG2504|consen 123 LGLLLSSFAT-------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RAL 170 (509)
T ss_pred HHHHHHHHHh-------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHH
Confidence 9999999987 555555555 5689999999999999999777754 899
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhcc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCK 267 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (577)
+.++...+..+|..+=|.+..++.+.+|||..+++.+.+.+-.++.....+|.....++.++.. .+. ...
T Consensus 171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~---~~~-------~~~ 240 (509)
T KOG2504|consen 171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKD---LRN-------SAA 240 (509)
T ss_pred HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhh---hcc-------ccc
Confidence 9999889999999999999999999999999999887776555554444444222222210000 000 000
Q ss_pred CCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCcc------ccc---hhhhhHHHHH
Q 008106 268 SKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIV------QCT---VKEVEEVKIV 338 (577)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~ 338 (577)
..+... +..+.+ ..+ ..+........+..... + ....++ ... .+...+++-+
T Consensus 241 ~~~~~~----------~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~d~~ll~~~~fl 301 (509)
T KOG2504|consen 241 SVESTP----------KPVELR-ISE--RDSGLKKLSLSNLATLK-R-----GPDKWRNSPLQAFLSMLDLSLLKDPKFL 301 (509)
T ss_pred cccccc----------cccccc-ccc--CCCCCCcccccchhhhh-h-----CCccccccchhhhhhhhhHHHHcCchHH
Confidence 000000 000000 000 00000000000000000 0 000010 000 0000111111
Q ss_pred HhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCCh
Q 008106 339 VKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITH 418 (577)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~ 418 (577)
.+.....+....+......+..+.. +.+-.....+.+.+...+..+++.++.+.+.|+.. ...
T Consensus 302 ----~~~~~~~~~~~g~~~p~~~l~~~~~----~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~ 364 (509)
T KOG2504|consen 302 ----LLALSNLFAYLGFNVPFVYLPSYAK----SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRA 364 (509)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHh----hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cch
Confidence 1111111111111111111222211 11100112223333444455555555555544333 122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHH
Q 008106 419 LQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRS 498 (577)
Q Consensus 419 ~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg 498 (577)
.....++++.++++.++.... .+.+.++...++.|+..+...........+..+.+.-.
T Consensus 365 ~~~~~~~ll~~gl~~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~ 423 (509)
T KOG2504|consen 365 LVLFLLTLLIAGLARLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS 423 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc
Confidence 333455666666665454442 35566777779999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 008106 499 LATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWA 567 (577)
Q Consensus 499 ~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~ 567 (577)
.+.|+..+.+.++..+|+.+.+.+.+.+ +.|+..|+..++..+++.+++++..
T Consensus 424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~t----------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 424 NAYGLLLLFQGIGALVGPPIAGLLYDIT----------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHhHHHHHcCcccceeeeecc----------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999988766433 2245567777777777776665555
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=147.77 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=129.1
Q ss_pred hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCc
Q 008106 57 LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 136 (577)
Q Consensus 57 l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (577)
+.++++....+.+.+.++|.+++.++.+++|.+.||+ .-.+.+....++.++-.++.....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------ 132 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------ 132 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 3478889999999999999999999999999999997 978877777777776665555544
Q ss_pred cCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHh------
Q 008106 137 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI------ 210 (577)
Q Consensus 137 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l------ 210 (577)
+.+.+++.|++.|+..++.+|....+++.++.+++ |+.-+++++...++|.++|..+...+
T Consensus 133 -------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 133 -------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred -------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 67889999999999999999999999999999999 99999999999999999999888775
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 211 EDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 211 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
....||||.|++.+++.+...++.++..|
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 34578999999999877665555555444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=137.05 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q 008106 43 NLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRS 122 (577)
Q Consensus 43 ~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~ 122 (577)
-.........+..-+....|.+..|...+......+..+++...|.++|++ |||+.+.+......+...+...++
T Consensus 90 d~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp---- 164 (528)
T KOG0253|consen 90 DAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP---- 164 (528)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC----
Confidence 333444445566667788899999999999999999999999999999997 999999988777776666666554
Q ss_pred CCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHH
Q 008106 123 LKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALI 202 (577)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~i 202 (577)
+...+.+.|.+.|+|.|+ .|...+.-.|..|..+ |....-.. ....+|.++
T Consensus 165 ---------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ 215 (528)
T KOG0253|consen 165 ---------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF 215 (528)
T ss_pred ---------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence 677899999999999999 7888899999999887 76665554 566788888
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 203 AVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 203 gp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
...+.-.+..+.||||-....++...+.+...+..
T Consensus 216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhc
Confidence 87777777788899998887776554444444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-13 Score=142.46 Aligned_cols=394 Identities=11% Similarity=0.067 Sum_probs=219.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH-
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF- 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~- 108 (577)
+..|......++..+.+-...++.+.++++..|+|.++.|.+.++..+...+.+++.|.++||. |.||-+++...+..
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4677777878887788777788999999999999999999999999999999999999999996 97776555443322
Q ss_pred -HHHHHH-HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 109 -MGLLLL-TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 109 -~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+-+.. .+.+.... + +.++.++.++..+.......+.. |.+-++.. .+.+
T Consensus 86 l~~pff~~v~~pll~~---------------------n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s---r~~~ 137 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQS---------------------N---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS---RRNG 137 (412)
T ss_dssp TCHHHHHHTHHHHHHT---------------------T----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH---HHHS
T ss_pred HHHHHHHHHHHHHHHH---------------------H---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHH---HHhc
Confidence 222222 22221000 1 23333343444444433333333 44443321 1122
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 266 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (577)
-=+|-..+..++|.+++..++|++.+ .+-+..|++..+..++..++.+..+++..++.+..+
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~----------------- 199 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD----------------- 199 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-----------------
T ss_pred CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-----------------
Confidence 23334667788999999999999876 455678887666555444444444332111100000
Q ss_pred cCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHH
Q 008106 267 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 346 (577)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (577)
.. + +++ +..+ +.+ ..+.-..|+.+....+..
T Consensus 200 ---------------------~~------~-~~~------~~~~-~~~--------------~~~l~k~~~fw~~~l~v~ 230 (412)
T PF01306_consen 200 ---------------------AL------G-AKK------DKVS-LKD--------------VLSLFKMRNFWFFVLFVI 230 (412)
T ss_dssp ---------------------TS------S-S-------------HHH--------------HHHHTTSHHHHHHHHHHH
T ss_pred ---------------------cc------c-cCC------CCCc-HHH--------------HHHHhcchhHHHHHHHHH
Confidence 00 0 000 0000 000 001111233333333333
Q ss_pred HhH-HHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHH
Q 008106 347 STI-MLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTG 425 (577)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g 425 (577)
... .+.++.+|.+.++..+- +.. +..+..+...+.+...+=. +.-.+..++.+| .+.+..+.++
T Consensus 231 g~~~~Y~vfdqqf~~y~~~~f---~~~----~~g~~~~G~l~s~~v~~E~-~~m~~~p~li~r-------ig~k~~Llla 295 (412)
T PF01306_consen 231 GVAAIYDVFDQQFPIYFASFF---QSA----GQGNQMYGYLWSVQVFLEA-LMMFFSPWLINR-------IGAKNLLLLA 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS---SSH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-------H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccc----ccChhHHhHHHHHHHHHHH-HHHHHHHHHHHh-------cChHhHHHHH
Confidence 333 33333334333333211 100 0001111222222222211 111233444455 3444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHH-
Q 008106 426 LILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS- 504 (577)
Q Consensus 426 ~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~- 504 (577)
..++.+=....++. .+++++.+.-.+.++-..+......-|+.+.+|++..++...+.
T Consensus 296 g~i~~iRi~~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~ 354 (412)
T PF01306_consen 296 GVIMAIRIIGSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGF 354 (412)
T ss_dssp HHHHHHHHHHHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Confidence 55555555555543 46777888889999999899999999999999999999999885
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 505 WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 505 ~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
+...++|..+.+.+.|.+.+ .-+++..|++++.+.++..++..+..++.++
T Consensus 355 ~~~~~~~~~i~s~~~G~lyd-----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 355 QFAKQIGIIILSPLAGYLYD-----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp TTTHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHhhhHHhhHh-----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 58888999999999998873 2456678999999988888887777776654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-12 Score=131.15 Aligned_cols=368 Identities=15% Similarity=0.167 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 008106 34 FVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL 113 (577)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l 113 (577)
.+.++.+-.|...-++-+ +..-+++++|.|.+++|.+++...++..+.+++..+++.|+ |.++.+.+++++.++|..+
T Consensus 16 gIvlia~NLR~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~i 93 (395)
T COG2807 16 GIVLIAFNLRPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILI 93 (395)
T ss_pred HHHHHHhccchhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 344444445555544433 33667899999999999999999999999999999999996 9999999999999999988
Q ss_pred HHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHH
Q 008106 114 LTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 193 (577)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (577)
-... +...++.+-.+.|.|.+...+..|..+-+.||++. +..++.|.
T Consensus 94 R~~~--------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs 140 (395)
T COG2807 94 RSLG--------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYS 140 (395)
T ss_pred Hhcc--------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHH
Confidence 7654 45678888899999999999999999999999875 88999999
Q ss_pred HHHhhhhHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCC
Q 008106 194 FCLSCGALIAVTFVVWIEDNK-GWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSS 272 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (577)
...++|+++++.+...+.++. |||....+-+...++++++.+-... |++.+..+.
T Consensus 141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~--r~~~~~~~~---------------------- 196 (395)
T COG2807 141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQAL--REQAASIAT---------------------- 196 (395)
T ss_pred HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccc----------------------
Confidence 999999999999999998877 7999988888777777766544321 111100000
Q ss_pred CcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHH-HHhHHH
Q 008106 273 NAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIF-MSTIML 351 (577)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 351 (577)
+. ++. ..-|| .++.+.+..++ .-...+
T Consensus 197 ----------------~~------~~~---------------------~~vw~---------~~~aW~vtLfmGlqS~~~ 224 (395)
T COG2807 197 ----------------KL------VSV---------------------RKVWR---------SPLAWQVTLFMGLQSLLY 224 (395)
T ss_pred ----------------cc------ccc---------------------ccccc---------CchhHHHHHHHHhhHHHH
Confidence 00 000 00121 12222222222 223456
Q ss_pred HhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHH
Q 008106 352 NCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIV 431 (577)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i 431 (577)
++...+++..+.... ++.. ..+.+-+...+..+..+.+...+ .+|. .+.+........++.+
T Consensus 225 Y~~~~WLP~ili~~G--~sa~------~aG~llsl~~l~~~~~~ll~P~l----a~R~------~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 225 YIVIGWLPAILIDRG--LSAA------EAGSLLSLMQLAQLPTALLIPLL----ARRS------KNQRPLVVLALLLMLV 286 (395)
T ss_pred HHHHHHHHHHHHHcC--CCHH------HhhhHHHHHHHHHHHHHHHHHHH----HHHh------cccchHHHHHHHHHHH
Confidence 666777777766543 2221 12222222333333333333333 3331 1223334445555555
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCC-chhHHHHHHHHHHHHHH
Q 008106 432 AMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP-LSMRSLATSLSWASLAM 510 (577)
Q Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P-~~~rg~~~g~~~~~~~l 510 (577)
+.+-+.+.+. +..++| .+++|+|.+..+|....++....+ ++..+.-.|+.+....+
T Consensus 287 G~~G~~~~P~------------------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYl 344 (395)
T COG2807 287 GLVGLLLAPG------------------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYL 344 (395)
T ss_pred HHHHHHHhhh------------------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHH
Confidence 5554444321 122333 488899999999999998887665 45555555666665556
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 511 GYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAA 568 (577)
Q Consensus 511 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~ 568 (577)
=..+||.+.|.+.+.+ ++| ......++...++..++-+...|
T Consensus 345 lAa~GP~l~G~lhDa~-----gsw-----------~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 345 LAAFGPWLFGFLHDAT-----GSW-----------SAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred HHhhhhhhHhHHHHhc-----CCh-----------HHHHHHHHHHHHHHHHHHhhcch
Confidence 6667899999988654 334 33455666666555555444444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-12 Score=134.90 Aligned_cols=176 Identities=11% Similarity=0.141 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhHHHH-HHHHHHHHHH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYRIYV-ISAAIEFMGL 111 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~~l~-~~~~~~~~~~ 111 (577)
.+..+..++.+..+..++..|+++.+|+++..+|.+....-+.-.+.-|+.|+++||. +||||..+ ++.+.++++.
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3556666777777778899999999999999999999999999999999999999973 58876554 5666777777
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+++...+.. +.......+.+.-++..++.........++.+|+.++.+ +|.+..++
T Consensus 95 ~llf~~p~~-------------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~ 150 (460)
T PRK11462 95 VLAYSTPDL-------------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSW 150 (460)
T ss_pred HHHHhCCCC-------------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHH
Confidence 666543210 111134445555566678888888888999999998654 29999999
Q ss_pred HHHHHhhhhHHHHHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDN-------KGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~-------~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
...+.++|..+++.+...+.+. .||+....+.+++.++...+.+
T Consensus 151 r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 151 RFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888898888887665444332 2466555555544444443333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-14 Score=142.39 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=145.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhccc-chhHHHHHHHHH-
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIYVISAAI- 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Grr~~l~~~~~~- 106 (577)
.|.+|.++++.++.++..|++..|.|+|+.|..|+|..++++..+.|..++..++++.||+|||.+ |||...-+...+
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999998 777665544333
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++.+...++++ .+..+..+..+++|+..-+..-.+.....|..|.+. -|
T Consensus 331 i~~~~~~~w~~~~-----------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aG 381 (448)
T COG2271 331 ITASLVLYWLAPN-----------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AG 381 (448)
T ss_pred HHHHHHHHHcCCC-----------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------cc
Confidence 3344444444331 155677777778888877777777777889999887 88
Q ss_pred hhHHHHHHHHhh-hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 187 AFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 187 ~~~~~~~~~~~l-G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
++.|+..+...+ |+..+....|++.|.+||...|.+..+..+++.+++.
T Consensus 382 tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 382 TATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred chhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 899998888888 9999999999999999999999977766655554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=137.65 Aligned_cols=177 Identities=11% Similarity=0.072 Sum_probs=134.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+++..+..+...++....++....++|.|+++++|+++.+.+.+.+...+...++.++.|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334444444444555555666667899999999999999999888877777888899999999997 9999888776655
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.+....+...+ +.+.+.+.+++.+++.|...+..+....|.+|+ + |++
T Consensus 293 ~~~~~~~~~~~-------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~ 340 (393)
T PRK15011 293 VCFYAGMLMAH-------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGS 340 (393)
T ss_pred HHHHHHHHHHh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cch
Confidence 55444433332 344556677777777666666667778888874 4 789
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
+.++++...++|..++|.++|++.+..||+..|.+..+..+++++..+..
T Consensus 341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99998888999999999999999998999999998887777766665543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=123.57 Aligned_cols=365 Identities=11% Similarity=0.066 Sum_probs=224.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhH-HHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYR-IYVISAAIE 107 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~-~l~~~~~~~ 107 (577)
-..-....+..++.+-.+..++..|.++..|+++..+|.+..+.-+.-.+.-|+.|.++||. +||+| -++++.+-+
T Consensus 14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~ 93 (467)
T COG2211 14 KIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPF 93 (467)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHH
Confidence 34455667777788888888999999999999999999999999999999999999999975 47655 555666778
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
++.+.++..+++. +.+.+....++.-++.+++...+.....++.+|+.++.+ +|.+
T Consensus 94 ~i~~~l~F~~p~~-------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~ 149 (467)
T COG2211 94 AIVAVLLFITPDF-------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERAS 149 (467)
T ss_pred HHHHHHHHcCCCc-------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHH
Confidence 8888877766421 112355666777788899999999999999999998765 3999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhcc-------ccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIED-------NKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTA 260 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (577)
..++-....++|..+...+.+.+.. ..||+..-.+.+++.++.++..++..+| |..+++
T Consensus 150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E-R~~~~~------------- 215 (467)
T COG2211 150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE-RVVETQ------------- 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccCccc-------------
Confidence 9999888888887776555544432 2366666665555555555444433221 111000
Q ss_pred HHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHh
Q 008106 261 AIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVK 340 (577)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (577)
+.+ + +...++.+.. ...++...
T Consensus 216 ---------~~~-------------------------~-------~~~~~~~~~~-----------------~~~~~Nrp 237 (467)
T COG2211 216 ---------PTK-------------------------T-------GVKLKLKDSF-----------------LLIFKNRP 237 (467)
T ss_pred ---------cCc-------------------------c-------cccccHHHHH-----------------HHHHccch
Confidence 000 0 0000000000 00011111
Q ss_pred HHHHHHHhHHHHhhhhccchhHHhhh-hhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChh
Q 008106 341 IFPIFMSTIMLNCCLAQLSTFSVQQA-ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 419 (577)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~ 419 (577)
...+.....+.++..+...+...++. ..++.. ...+...........+++.++ .-++.+| .+++
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~----~p~L~~~-------~gkk 302 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLIL----WPRLVKK-------FGKK 302 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHh----HHHHHHH-------hchH
Confidence 11111222233333333333333221 111111 111111111111112222223 3333344 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCC------
Q 008106 420 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAP------ 493 (577)
Q Consensus 420 ~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P------ 493 (577)
+...++.++..++.+...+.. ..+.+.+++..++.+++.+...+..++++.|...
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T 363 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT 363 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence 557778888888877776642 1245556666688889999999999999998664
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 494 -LSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 526 (577)
Q Consensus 494 -~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~ 526 (577)
.+..|...|...+..-+|.+++..+.+.+....
T Consensus 364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456688889999999999999999999988654
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=141.76 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=130.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.+.......++....+|++..++|.|+++.+|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~ 327 (490)
T PRK10642 249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 34444444455667788999999999999989999988888887788888899999999999997 99999988876555
Q ss_pred HHHHHHH-HHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 109 MGLLLLT-VQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 109 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
++...+. ...+ .+...+++++++.+++.+...+....++.|.+|++. |++
T Consensus 328 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~ 378 (490)
T PRK10642 328 VLAIPAFILINS-----------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS 378 (490)
T ss_pred HHHHHHHHHHhC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence 4333322 2110 034567778888887776666777788889999998 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~ 237 (577)
++++.+....+++.++|.+.+++.+..+ |+.++++..+..++.++..++.
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9998555566777889999999887654 6766665554444444444443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-10 Score=122.61 Aligned_cols=94 Identities=9% Similarity=0.000 Sum_probs=75.5
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCC
Q 008106 462 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLN 541 (577)
Q Consensus 462 ~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 541 (577)
+.+-+.+.-++.|+..+...+.+-++..++.|++.++...|++.+.......+||.+++.+...+
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t--------------- 443 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT--------------- 443 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 33444455578899999999999999999999999999999999999999999999999998544
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 542 HYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 542 ~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
++.++.+..+.++.++++++++.+..+..
T Consensus 444 -g~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 444 -GSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred -CCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 22445677888888888777755544443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=141.13 Aligned_cols=177 Identities=16% Similarity=0.111 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.+|.+.+..++....++++..++|.|+++.+|++..++++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4588888888888888899999999999999999999999999999999999999999999997 999987766554444
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..+..+... .+.....+.+++.|+...+..........|.+|++. |+++.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~ 387 (467)
T PRK09556 337 IFTLGVYQHA-----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVAN 387 (467)
T ss_pred HHHHHHHHhc-----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHH
Confidence 3333222210 033445566666775433332233356679999988 99999
Q ss_pred HHHHHHHhh-hhHHHHHHHHHhcc------------ccchhHHHHHHHHHHHHHHHHHHh
Q 008106 190 NYYVFCLSC-GALIAVTFVVWIED------------NKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 190 ~~~~~~~~l-G~~igp~~~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
++.+...++ |++++|.+.|++.+ ..||+..|.+..+..+++++..++
T Consensus 388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999988886 77999999999999 678999999887777666555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=137.61 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=132.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++......++....++.+..++|.|+++++|.+..+.+.+.....+...++.++.|+++||+ |||+.+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3467777777888888888889999999999999999999999999999999999999999997 999988766555444
Q ss_pred HH-HHH-HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 110 GL-LLL-TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 110 ~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.. .+. .+... .+.+.++...++.+++.+...+...+++.|.+|+++ |++
T Consensus 298 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~ 348 (394)
T TIGR00883 298 LAVPLLMALLDS-----------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYT 348 (394)
T ss_pred HHHHHHHHHhcC-----------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eee
Confidence 33 222 22110 034556666777888888888899999999999988 999
Q ss_pred hHHH-HHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHH
Q 008106 188 FFNY-YVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATI 227 (577)
Q Consensus 188 ~~~~-~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~ 227 (577)
++++ +.....+|..++|.++|++.+..| |+..++...+..
T Consensus 349 ~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 349 GASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred EeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 9987 456667899999999999999888 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.5e-12 Score=137.42 Aligned_cols=182 Identities=15% Similarity=0.071 Sum_probs=131.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+++....+....++..+.+|.+..+.+.|+++.+|.+......+.....+...++.++.|+++||+ ||||.+..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 344444444566777888999999999999999999887655555556666778888999999997 9999998887665
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++...+....... .....+++..++.+++.+...+..++++.|.+|.+. |+.
T Consensus 327 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 327 TLSAFPFFMALEAQ---------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHcC---------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 55443332221000 023334445566678877777888899999999988 999
Q ss_pred hHHHH-HHHHhhhhHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHhc
Q 008106 188 FFNYY-VFCLSCGALIAVTFVVWIEDNK--GWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 188 ~~~~~-~~~~~lG~~igp~~~~~l~~~~--gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
+.++. ..+..+|++++|.+.+++.+.. +|+..+...++..+++.+..+..
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 99884 4555689999999999998744 48888877766666666555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=134.53 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=137.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++.+....++..........+.+.|. +++|.++.+.+.+.+.+.+...++.++.|+++||+ |||+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence 3455555556666666555666666675 57899998899999999999999999999999997 999999999988888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.+++.+.++. ....++...++.+++.|...+..++++.|.+|+++ |++.+
T Consensus 283 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 333 (377)
T TIGR00890 283 GMAAMLFIPML-----------------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY 333 (377)
T ss_pred HHHHHHHcccc-----------------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence 88777654310 22334455677788888888888889999999998 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSI 231 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (577)
++++...++|..++|.+.|++.+..||++.|.+.++..++++
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988877665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=138.17 Aligned_cols=180 Identities=10% Similarity=0.059 Sum_probs=137.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc--------hhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP--------SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVI 102 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~--------~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~ 102 (577)
.++..++..++..........+.+.|++ +.|.++ ...+.+.+...+...++.++.|+++||+ |||+.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~ 286 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL 286 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence 3455555566655555555567788875 455443 5568888888888899999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhh
Q 008106 103 SAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGR 182 (577)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 182 (577)
+.++..++..+....... ..+.+.+++.+++.|++.+...+....++.|.+|+++
T Consensus 287 ~~~~~~v~~~l~~~~~~~---------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---- 341 (418)
T TIGR00889 287 SLVAWALRFGFFAYGDPE---------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---- 341 (418)
T ss_pred HHHHHHHHHHHHHHcCcc---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence 999888887666653210 0023556778889999988888888899999999998
Q ss_pred hchhhhHHHHH-HHHhhhhHHHHHHHHHhccc------cchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 183 KQRSAFFNYYV-FCLSCGALIAVTFVVWIEDN------KGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 183 ~~r~~~~~~~~-~~~~lG~~igp~~~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
|++.+++.+ ....+|.++||.++|++.+. +||+..|.+.++..+++.+++++..+
T Consensus 342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999887 46999998887766655555444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-12 Score=131.13 Aligned_cols=172 Identities=13% Similarity=0.094 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
.+.+....++...........+|.|+++++|.++.+.+.+.....+...++.+++|+++||+ |||+.+.++.++..+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY 279 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 44444444444444555566788999999999999999888777777778889999999997 99999988877655555
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
......+ +.+.+++.+++.|++.|...+.......|..|++ +++.+++
T Consensus 280 ~~~~~~~-------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~ 327 (375)
T TIGR00899 280 TGLAADN-------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTL 327 (375)
T ss_pred HHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHH
Confidence 4444433 4555666777888888887788888888988753 5689999
Q ss_pred HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
++...++|..++|.+.|++.+..||+..|.+.++..+++.+..++
T Consensus 328 ~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 328 YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999888777766665443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-12 Score=132.98 Aligned_cols=169 Identities=19% Similarity=0.186 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 008106 37 AVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTV 116 (577)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~ 116 (577)
....+..+.+..+..+++.|+. +.|+ .+.+...+.+.++..++.++.|+++||+ ||||.+.++..+..++.+++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~ 298 (399)
T PRK05122 223 MGLALASIGFGTIATFITLYYA-ARGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWL 298 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677778888876 4565 3456666777888888999999999997 9999999998888888777766
Q ss_pred HhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHH
Q 008106 117 QAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCL 196 (577)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 196 (577)
.+ +.+.+++.+++.|++.+...+.....+.|.+|+++ |++..++++...
T Consensus 299 ~~-------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 299 AP-------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred hc-------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 54 44556777888999998888887788889999888 999999999999
Q ss_pred hhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 008106 197 SCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPF 240 (577)
Q Consensus 197 ~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~ 240 (577)
++|..+++.+.|++.+..||+..|.+.++..+++++..++.+++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998887777766665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-12 Score=133.29 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++.+.+..++....++.+..++|.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 4466666777777778888899999999999999999999999999999999999999999997 999999887776666
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
...+....+ +.....+..++.|++.+...+...+...|..|++ +++..
T Consensus 284 ~~~~~~~~~-------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 331 (394)
T PRK03699 284 LMYLFVNTD-------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLV 331 (394)
T ss_pred HHHHHHHcC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHH
Confidence 555554432 3334455566778877777777777777776643 45667
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
++.....++|..++|.+.|++.+..||+..+++..+..+++..
T Consensus 332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 7878888999999999999999999999998877666555543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.3e-10 Score=114.65 Aligned_cols=382 Identities=13% Similarity=0.039 Sum_probs=210.6
Q ss_pred hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc-----hhH-HHHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 008106 57 LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT-----TYR-IYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130 (577)
Q Consensus 57 l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-----rr~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 130 (577)
+..+++++..-.+.+++....... ..+..|+.||+. + ||. -++.|.++++.+..+.+++.-.- ..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~----- 76 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AE----- 76 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--cc-----
Confidence 456889988888888888777665 477889999997 6 443 45666666777777666543100 00
Q ss_pred ccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHh
Q 008106 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l 210 (577)
..+ ..+++...........-.+.|+|.+....+.-+++.|..|+++ |++..++.+...-+|.+++..+.+.+
T Consensus 77 -~~~-~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 77 -SGQ-QSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred -ccc-ccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011111122234444456889988888899999999999999 99999999999999999999999988
Q ss_pred ccccchh----HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCC
Q 008106 211 EDNKGWQ----WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSN 286 (577)
Q Consensus 211 ~~~~gw~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (577)
.+.+.-. ..-.+..+..++.++..+-.+++.++..+..+
T Consensus 149 L~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~------------------------------------- 191 (403)
T PF03209_consen 149 LDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE------------------------------------- 191 (403)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC-------------------------------------
Confidence 8877532 22223333333344444433332221110000
Q ss_pred CCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhh
Q 008106 287 ESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQA 366 (577)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (577)
.++.++.+. |++...+ .+.++.+.. ++.....+++--..+.. |--+.
T Consensus 192 -------------------~~~~~f~~a---------~~~~~~~--~~a~~f~~f--l~l~t~a~~~QD~iLEP-ygg~V 238 (403)
T PF03209_consen 192 -------------------RPRPPFREA---------WRQVWAS--PQARRFFVF--LFLGTLAFFMQDVILEP-YGGEV 238 (403)
T ss_pred -------------------CCCccHHHH---------HHHHHhC--CChhHHHHH--HHHHHHHHHhhHHHcCC-chhHH
Confidence 000001110 0000000 011222111 11111111111000000 00000
Q ss_pred hhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 367 ATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRV 446 (577)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~ 446 (577)
.++... .+..+......+..++..+.++... +|. ++.+....|..+..++........
T Consensus 239 fgmsv~------eTT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~------ 296 (403)
T PF03209_consen 239 FGMSVG------ETTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAG------ 296 (403)
T ss_pred cCCCHH------HHHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHH------
Confidence 011100 1123334445555555555555432 232 112223334444444443322211
Q ss_pred hhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 447 AVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNIT 526 (577)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~ 526 (577)
..-+.+.+.+..+++|++.++......+...+..+++..|+.+|.|...|.++..++..+.+.+.+..
T Consensus 297 ------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 297 ------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred ------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11245667788899999999999999999999999999999999999999999999999999988765
Q ss_pred ccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008106 527 STYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFW 566 (577)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~ 566 (577)
.. +.. +-....|...|.+=+++.++++++...+
T Consensus 365 ~~-----~~~--~~~~~aY~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 365 RA-----LFG--NSPALAYGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HH-----hcc--CCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 111 0112355556666666666555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=127.57 Aligned_cols=174 Identities=22% Similarity=0.296 Sum_probs=153.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhH-HHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYR-IYVISAAIEF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~-~l~~~~~~~~ 108 (577)
|.++...+..++..........+.+.|+.+.+|.++.+.+.......++..++.++.|+++||+ |||+ .+.++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 3455566667777777788888899999888899999999999999999999999999999997 9999 9999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++...+ +.+...+..++.|++.+...+...+++.|..|+++ |++.
T Consensus 254 i~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 302 (352)
T cd06174 254 LGLLLLALAP-------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTA 302 (352)
T ss_pred HHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHH
Confidence 9888887754 45677888899999999999999999999999988 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
++..+...++|..++|.+.+++.+..||+..|.+.++..+++.+..+
T Consensus 303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999998888777665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=129.31 Aligned_cols=179 Identities=13% Similarity=0.019 Sum_probs=138.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..+.+.+..++....++++..++|.|+++ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345666667777788888999999999975 899999999999999999999999999999996 999999998887777
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCC-cccchhhhchhhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYD-ETTQLGRKQRSAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~ 188 (577)
+..+....+. +...+ ...+.|++.+...+.......|.++ +++ |++.
T Consensus 283 ~~~~~~~~~~------------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~ 330 (393)
T PRK09705 283 GFCGFIWLPL------------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKL 330 (393)
T ss_pred HHHHHHHccc------------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHH
Confidence 7665543221 11112 2245677888777877777777775 455 8999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcCcccc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGSPFYR 242 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~ 242 (577)
+++.+...++++.++|.+.|++.+..| |...|.+.++..+...+..+...++.+
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999886 788888777666665555555444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=139.14 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHH
Q 008106 72 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG 151 (577)
Q Consensus 72 ~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (577)
..+..++..++.+++|+++||+ |||+++.++.++.+++++++++.+ +...+++.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-------------------------s~~~ll~~ 654 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-------------------------SESAMIAL 654 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-------------------------cHHHHHHH
Confidence 4455677788999999999997 999999999999999888887765 34456666
Q ss_pred HHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 008106 152 LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSI 231 (577)
Q Consensus 152 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~ 231 (577)
+++.+++.++..+...++++|++|++. |++++++.+...++|+++||.+++++.+. +...+|++.++..+++.
T Consensus 655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ 727 (742)
T TIGR01299 655 LCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG 727 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 777787777788889999999999999 99999999999999999999999988764 45667777776666655
Q ss_pred HHHHhc
Q 008106 232 PIFLLG 237 (577)
Q Consensus 232 ~~~~~~ 237 (577)
++.++.
T Consensus 728 ll~~~L 733 (742)
T TIGR01299 728 LLALKL 733 (742)
T ss_pred HHHHhC
Confidence 544443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=130.99 Aligned_cols=171 Identities=16% Similarity=0.024 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
.+.+....++....++.+..++|.|++ +.|+++.+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (406)
T PRK11551 222 TLLLWISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL 299 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 344444455556677777888899986 4799999999999999999999999999999997 99999988776666665
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
++....+ +.+.+.+..++.|++.++..+...+++.|.+|+++ |++..++
T Consensus 300 ~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 348 (406)
T PRK11551 300 AALAAAP-------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA 348 (406)
T ss_pred HHHHhcC-------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence 5554432 33445555667787777777888899999999998 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~ 235 (577)
.+...++|..++|.+.|++.+..+ |...+.+.....+++.+..+
T Consensus 349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 55556555555544444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=130.34 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCch---hhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 008106 37 AVEVLENLAYLANASNLVLYLSKFMHFSPS---SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL 113 (577)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l 113 (577)
...+........+.++++.|+.+..+.... ..+.+.+...++..++.+..|+++||+ |||+.+..+..+..++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 226 VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHH
Confidence 333444445455667788888765443222 234455556677778888999999997 9999999998877777766
Q ss_pred HHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHH
Q 008106 114 LTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 193 (577)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (577)
..+.+ +.+.+++.+++.|++.+...+...+.+.+..|+++ |++.+++++
T Consensus 305 ~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 353 (408)
T PRK09874 305 MSFVQ-------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ 353 (408)
T ss_pred HHHhc-------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence 65543 45667778889999999988988889889888888 999999999
Q ss_pred HHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 194 FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
...++|..+||.++|++.+..||+..|.+.+++.+++.+..+.
T Consensus 354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877776665544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=127.39 Aligned_cols=172 Identities=13% Similarity=-0.015 Sum_probs=146.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.++...+..++....++...++.+.|++ ++|.++.+.+.+.+...+...+..++.|++.||+ |+|+.+.++.+...
T Consensus 204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACV 281 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHH
Confidence 355777778888888888888899999996 5999999999998888888889999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
+...++++.+ +.+.+++.+++.|+..|...+....++.+. |+++ |+++
T Consensus 282 ~~~~~~~~~~-------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~ 329 (382)
T TIGR00902 282 GRWAIIGAIE-------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKL 329 (382)
T ss_pred HHHHHHHhHh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHH
Confidence 9988887765 667788889999999999999999999988 8877 8899
Q ss_pred HHHHH-HHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 189 FNYYV-FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 189 ~~~~~-~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
.++++ ....+|..++|.++|++.|++|+ ..|.+.++..++++++..
T Consensus 330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 99876 46789999999999999999986 567777766666655443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=131.10 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=144.6
Q ss_pred cccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccch-hH
Q 008106 21 ALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSK-FMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT-YR 98 (577)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-r~ 98 (577)
.+...+.+||.+++..+..++....+..+....-.|+++ +.+-+++..|+++++..++..+..+..|+.+.|. |+ |+
T Consensus 25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~ 103 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKK 103 (488)
T ss_pred cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCccc
Confidence 344456789999999999999998888888888889875 4777788889999999999999999999999996 75 88
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCccc
Q 008106 99 IYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT 178 (577)
Q Consensus 99 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (577)
-++.|.++.++|.++....+..+ ....+.++++|++.|+|.|.. ...-+++++....++
T Consensus 104 Pli~s~ii~~~g~llY~~l~~~~--------------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d 162 (488)
T KOG2325|consen 104 PLIVSFLIAIIGNLLYLALAYVP--------------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED 162 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc--------------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc
Confidence 88899999999999984333211 115788999999999998864 667789999888888
Q ss_pred chhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc----ccc---------chhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 179 QLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE----DNK---------GWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~----~~~---------gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
|.++++....+..+|.++||.+...+. +.+ -|..+-++.+++.++.++++.+..+
T Consensus 163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 899998877776777777776654332 111 1345556666666655555544443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-12 Score=124.28 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.+..+++..|..+++| .--.-+.+++..+.+...++..++.+.++....+.+.++|++.||.+|-|..-++-..+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 3445555555555553 333456788888888888888999999999999999999999999999888777777777777
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+..+.-.-. ...|....+|++.|+|.-......+.+..-+|..++ ..-.++
T Consensus 124 qliFa~Ggi~----------------------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfG 175 (459)
T KOG4686|consen 124 QLIFAAGGIS----------------------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFG 175 (459)
T ss_pred HHHHHhchHH----------------------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhh
Confidence 7766542210 167899999999999988888889999999999998 999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccc
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKG 215 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~g 215 (577)
+......+|+..--.+.+++.+..|
T Consensus 176 lqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 176 LQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred HHHHHHHhhceeeeeecHHHHHHHH
Confidence 9999999999988888888877554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=126.42 Aligned_cols=177 Identities=13% Similarity=0.035 Sum_probs=130.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHH-HHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIY-VISAAIEF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l-~~~~~~~~ 108 (577)
+.++..++..++....++.+..+.+.|+++.+|.++.+.+++.+...+...++.+++|+++||+ |||+.. ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4577788888888889999999999999999999999999999999999999999999999997 998611 11111111
Q ss_pred HH---HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 109 MG---LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 109 ~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
++ ..+..+..... ...........+.+.+.+ ..+...+++.|.+|+++ |
T Consensus 294 ~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNYV---------------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhccc---------------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------H
Confidence 11 11111111000 022223333333344444 67889999999999998 9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHH
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~ 235 (577)
++.+++.+...++|..++|.+.|++.+..| |+..|.+.++..+++.+..+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 99999887777666555443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-12 Score=133.29 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFM---HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.+.+..++....+.......+.|+.+.+ +.+..+.+.+.+...+...++.++.|+++||+ |||+.+.++.++..
T Consensus 225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~ 303 (420)
T PRK09528 225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA 303 (420)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence 343333334444444444456777776543 56667778888888888889999999999997 99999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.++..+.+ +.+.+++.+++.+++.+...+....++.|.+|++. |+..
T Consensus 304 ~~~~l~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~ 352 (420)
T PRK09528 304 VRIIGSGFAT-------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATI 352 (420)
T ss_pred HHHHHHHhcc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeee
Confidence 8888877654 45667778888888888777777788899999887 7777
Q ss_pred HHH-HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 189 FNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 189 ~~~-~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
.+. ++...++|.+++|.+.|++.+..||+..|.+.++..++...+.+
T Consensus 353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 353 YLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 665 67778899999999999999999999999987766555444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-11 Score=127.63 Aligned_cols=177 Identities=14% Similarity=0.030 Sum_probs=132.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH-HHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-ISAAIEF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~-~~~~~~~ 108 (577)
|.++...+..++....++++..+.|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 44677777788888889999999999985 5899999999988889999999999999999996 9988764 3333333
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++...+.+.+... ..+.+..++..++.|++.+...+. .+.+.|..| ++ |++.
T Consensus 300 ~~~~~l~~~~~~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~ 351 (402)
T TIGR00897 300 IFTLALYYIPQHF--------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAA 351 (402)
T ss_pred HHHHHHHHHHHcc--------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHH
Confidence 3333333222100 013445566677778777765443 455667655 46 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
+++.+...++|..++|.+.+++.+.+||+..|++.++..+++.++..+
T Consensus 352 ~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 352 MSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888777666555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-11 Score=128.24 Aligned_cols=164 Identities=12% Similarity=-0.050 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008106 46 YLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125 (577)
Q Consensus 46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 125 (577)
..++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++.+++.++..+.+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 356667889999888999999999999999999999999999999996 888888888887777777665543
Q ss_pred CCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHH
Q 008106 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVT 205 (577)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~ 205 (577)
+.....+..++.|++.+...+...+++.|..|++. |++.+++++...++|..+||.
T Consensus 311 ------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 311 ------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHH
Confidence 44556667777888888777777888999999988 999999999999999999999
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccc
Q 008106 206 FVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFY 241 (577)
Q Consensus 206 ~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 241 (577)
+.|++.+..|++..+.+.++..++...+.....++.
T Consensus 367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 367 LLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999988888877665555444444443433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-12 Score=110.44 Aligned_cols=132 Identities=13% Similarity=0.208 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHH
Q 008106 73 TNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGL 152 (577)
Q Consensus 73 ~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (577)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++...+ +.+.+.+.+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 58 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-------------------------NITVLIIAR 58 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-------------------------cHHHHHHHH
Confidence 445677788899999999997 999999999988888888777654 566788889
Q ss_pred HHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 153 YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 153 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..||++.|.+..+..++..+
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99999999989999999999999998 999999999999999999999999999988999999887776666555
Q ss_pred HHHh
Q 008106 233 IFLL 236 (577)
Q Consensus 233 ~~~~ 236 (577)
..++
T Consensus 133 ~~~~ 136 (141)
T TIGR00880 133 LLAF 136 (141)
T ss_pred HHhh
Confidence 5444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=123.36 Aligned_cols=175 Identities=13% Similarity=0.032 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.++......++....+++...+++.|+++..|.+..+.+++.+...++..++.++.|+++||+ |||+. ..+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~ 283 (390)
T PRK03545 206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVC 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHH
Confidence 345555556666666777777888899888999999999999999999999999999999997 98865 4444444444
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
..+.....+ +.+.+.+..++.|++.+...+...+.+.|..|+ + |+++++
T Consensus 284 ~~~l~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~g 332 (390)
T PRK03545 284 LLLLLPAAN------------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-A------TDVAMA 332 (390)
T ss_pred HHHHHHHhc------------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-c------HHHHHH
Confidence 433322211 445666677788888877777777778887763 5 889999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
+++...++|..+||.++|++.+.+|++..|.+.+++.+++++......
T Consensus 333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999889999999999999999999999999988887777766655433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=126.19 Aligned_cols=164 Identities=18% Similarity=0.263 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQA 118 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~ 118 (577)
.++....+..+..+.+.|+++ .|++ +.+.....+.++..+++++.|++.||+ ||||.+.++..+..++.++..+.+
T Consensus 225 ~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 225 LALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc
Confidence 334455666667778888864 5654 345566667777788999999999996 999999999888888877766543
Q ss_pred hccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhh
Q 008106 119 HTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC 198 (577)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 198 (577)
+.+...+..++.|++.+...+...+.+.|.+|+++ |++.+++++...++
T Consensus 301 -------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~ 349 (392)
T PRK12382 301 -------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDI 349 (392)
T ss_pred -------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHH
Confidence 34556677888899988888888888899999888 99999999999999
Q ss_pred hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 199 GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 199 G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
|..++|.+.|++.+..||+..|.+.++..+++.++.+..
T Consensus 350 g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 350 AYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888777766655543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-11 Score=128.86 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhccc-chhHHH-HHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF-TTYRIY-VISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~-Grr~~l-~~~~~~~ 107 (577)
+.+|...+..++....++++..++|.|++++.|++..+++.+...+.++..++.+++|+++||+. |||+.. .....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 45778888888888888999999999999999999999999888888888899999999999951 334332 2222333
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.++..+... .+.....+..++.|.+..........+..|.+|++. |++
T Consensus 333 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 383 (452)
T PRK11273 333 TIATIVYWLNPA-----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 383 (452)
T ss_pred HHHHHHHHHhcc-----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence 333333222210 022233344444554433322333455679999988 999
Q ss_pred hHHHHHHHHhhhhHH-HHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALI-AVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 188 ~~~~~~~~~~lG~~i-gp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
++++.+...++|+.+ +|.+.|++.+..||+..|.+.++..+++++...
T Consensus 384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999888888765 799999999999999999877776655544433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=122.15 Aligned_cols=160 Identities=13% Similarity=0.166 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQA 118 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~ 118 (577)
.+...+.+.....++|.|+++ .|.++.+.+.+.+...++..+++++.|+++||+ |||+.+..+..+..++..... .
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~ 284 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h
Confidence 333334444455678888864 699999999998888899999999999999997 999999988887777665442 1
Q ss_pred hccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhh
Q 008106 119 HTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSC 198 (577)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 198 (577)
. ......+.+.|++.+...|...+.+.|..|+++ ++...+.++...++
T Consensus 285 -------------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 332 (381)
T PRK03633 285 -------------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTV 332 (381)
T ss_pred -------------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHH
Confidence 1 123345566777767778888888899998877 77777787888999
Q ss_pred hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q 008106 199 GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 199 G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
|..+||.+.|++.+++||++.|.+.+...++.....
T Consensus 333 G~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 333 GSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777666554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=124.88 Aligned_cols=159 Identities=21% Similarity=0.201 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 008106 34 FVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLL 113 (577)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l 113 (577)
.+.....+.+...+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 320 (405)
T TIGR00891 242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP 320 (405)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence 344444455566666777899999999999999999999999999999999999999997 9999998887665333322
Q ss_pred HHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHH
Q 008106 114 LTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV 193 (577)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 193 (577)
...... +.+.+.+..++.++..++..+..++++.|.+|+++ |++.+++.+
T Consensus 321 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 370 (405)
T TIGR00891 321 VFAIGA------------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTY 370 (405)
T ss_pred HHHhCC------------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHH
Confidence 211110 34455556566666666777888899999999988 999999999
Q ss_pred HHHhhhhHHHHHHHHHhccccc-hhHHHHHH
Q 008106 194 FCLSCGALIAVTFVVWIEDNKG-WQWGFGIS 223 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~ 223 (577)
...++|..++|.+.|++.+..| |+..+...
T Consensus 371 ~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 371 QLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 9999999999999999999988 87666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-11 Score=126.06 Aligned_cols=177 Identities=18% Similarity=0.100 Sum_probs=123.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc-hhHHH-HHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT-TYRIY-VISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-rr~~l-~~~~~~~ 107 (577)
+.++.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ +|+.. ....+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 346777777777777888888899999988999999999999999999999999999999999622 22222 2221111
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++......... . +.....+..++.|++.............|.+|+++ |++
T Consensus 323 ~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 373 (434)
T PRK11663 323 LLSVGSLWLMPF-A----------------------SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGA 373 (434)
T ss_pred HHHHHHHHHccc-c----------------------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHh
Confidence 112111111110 0 22223333333444332222233456689998888 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
..++.+...++|.+++|.+.|++.+..||+..|.+.+++.+++.+..+
T Consensus 374 ~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 374 ATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777666554443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=125.58 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH-HH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL-LL 114 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~-l~ 114 (577)
+...++....++.+..+.|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.+..+..+..+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 4444556677888889999999988999999988888888888899999999999997 999998876554433221 11
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 194 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (577)
......+ +........++.+++.+...+...+++.|.+|++. |+.++++.+.
T Consensus 323 ~~~~~~~----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~ 374 (434)
T PRK15075 323 SWLVAAP----------------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYS 374 (434)
T ss_pred HHHHcCC----------------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHH
Confidence 1111000 22233333445556666666667788999999998 9999998544
Q ss_pred -HHhhhhHHHHHHHHHhccccchh
Q 008106 195 -CLSCGALIAVTFVVWIEDNKGWQ 217 (577)
Q Consensus 195 -~~~lG~~igp~~~~~l~~~~gw~ 217 (577)
+..+++.++|.+.+++.+..|++
T Consensus 375 ~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 375 LATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCc
Confidence 44456788999999999988853
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=112.82 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=143.9
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHH
Q 008106 20 PALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRI 99 (577)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~ 99 (577)
|....+......+|.+.+..++...+.+=+...-+.++++++|+|+..++.+.+.......+..++.|.++||+ ||+-.
T Consensus 254 pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~ 332 (459)
T KOG4686|consen 254 PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLW 332 (459)
T ss_pred cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceeh
Confidence 33444455556688888888888887777777789999999999999999999999999999999999999997 99998
Q ss_pred HHHHHHHHHH-HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCccc
Q 008106 100 YVISAAIEFM-GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT 178 (577)
Q Consensus 100 l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 178 (577)
.+.+..+..+ +..++.+. .+.-+++..++|++......+.+++++-..|+++
T Consensus 333 wv~~a~~~tl~~H~~l~Ft---------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q 385 (459)
T KOG4686|consen 333 WVASACILTLLGHSGLFFT---------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ 385 (459)
T ss_pred hHHHHHHHHHHHhhhHHhh---------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence 8887766554 55555553 3335566778888888877778999999999998
Q ss_pred chhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccc---hhHHHHHHHH-HHHHHHHHHHhc
Q 008106 179 QLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG---WQWGFGISTA-TILLSIPIFLLG 237 (577)
Q Consensus 179 ~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g---w~~~f~~~~~-~~~~~~~~~~~~ 237 (577)
.|++++..+...|+|-.+.|++.|.+.+.-| |--.|++... ..++...+++..
T Consensus 386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred ------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999999988655 4445554433 344444444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=126.57 Aligned_cols=148 Identities=20% Similarity=0.152 Sum_probs=115.8
Q ss_pred HHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008106 48 ANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPT 127 (577)
Q Consensus 48 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 127 (577)
.+..++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+.+.++..+..++.++.....+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999989999999999999999999999999999999996 9999998887666655544433211
Q ss_pred cccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHH
Q 008106 128 CVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 207 (577)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~ 207 (577)
.+.+...+..++.+....+..+..++++.|.+|+++ |++.+++++...++|..+||.+.
T Consensus 364 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~ 422 (496)
T PRK03893 364 ---------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILG 422 (496)
T ss_pred ---------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHH
Confidence 023333344444433333345677788999999988 99999999999999999999999
Q ss_pred HHhccccchhHHHHHHHH
Q 008106 208 VWIEDNKGWQWGFGISTA 225 (577)
Q Consensus 208 ~~l~~~~gw~~~f~~~~~ 225 (577)
|++.+.+||+..+.+.+.
T Consensus 423 g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 423 ALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHhccCChHHHHHHHHH
Confidence 999999999887765443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=112.88 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=108.1
Q ss_pred HHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc
Q 008106 52 NLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLE 131 (577)
Q Consensus 52 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 131 (577)
.+..|..+.+| +...+-|+..+|++......+.+-|+.||+ |-|..+.++..+-++|..+-..+.. +.+.
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cccc-------
Confidence 45567777888 667778899999999999999999999997 9999999999999999988776542 2211
Q ss_pred cCCCccCCCCCchHH--HHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHH
Q 008106 132 DGIASCREDEGGKAV--MLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW 209 (577)
Q Consensus 132 ~~~~~~~~~~~~~~~--~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~ 209 (577)
...+ ..+.+..+.+.+.-.+...-+-..+-+|++++ |..+...-.++..+|.++|.++...
T Consensus 136 -----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 136 -----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred -----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccce
Confidence 1334 78888888888888777776777788999998 9999998888888888888777666
Q ss_pred hccc
Q 008106 210 IEDN 213 (577)
Q Consensus 210 l~~~ 213 (577)
+..+
T Consensus 199 lV~~ 202 (480)
T KOG2563|consen 199 LVPS 202 (480)
T ss_pred ecCC
Confidence 6543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=123.23 Aligned_cols=175 Identities=12% Similarity=0.020 Sum_probs=113.5
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEV-LENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.+.+....+ +....+|++..++|.|+.+.+|.+..+.+...+...+...++.++.|+++||+ |||+.+.++.++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 322 (432)
T PRK10406 244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 444444433 45778899999999999999999998988888887777888888999999997 9999888776654433
Q ss_pred HHHHHH-HhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 111 LLLLTV-QAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 111 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
...... ..+.. +....+....+..++.+...+....+.+|.+|++. |++++
T Consensus 323 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~ 374 (432)
T PRK10406 323 TVPILSALQNVS----------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGV 374 (432)
T ss_pred HHHHHHHHHcCC----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhh
Confidence 322211 11000 11211211222223333333456678899999998 99999
Q ss_pred HHHHHHHh-hhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 008106 190 NYYVFCLS-CGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 190 ~~~~~~~~-lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 236 (577)
++.+...+ +++...|.+.+++. ..| |...+++.++..+++++..++
T Consensus 375 g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 375 GLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99776554 44555888888664 455 555566555555555444444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=124.16 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHH-HHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVT-NFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.+.+.+..++.....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444444455566666666778889988889999999999875 45678899999999999997 9999888776655554
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+......... .+...+.+..++..+..|...+...++..+..+++. +++.++
T Consensus 303 ~l~~~~l~~~~---------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~g 355 (491)
T PRK11010 303 NAGYWLLSITD---------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFA 355 (491)
T ss_pred HHHHHHHHhcc---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHH
Confidence 43332211000 023333444455444444444666788889999888 788899
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
+.+...++|..+++.+.|++.+..||+..|.+.++..+.+++.....++
T Consensus 356 l~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 356 LLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888887777766655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-10 Score=116.23 Aligned_cols=163 Identities=13% Similarity=0.036 Sum_probs=127.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKF--MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
.+.+++..+..++....--++..|++.|+.+. +|+++.+.+...+.+..+..++.+++++++||+ |+||.+.++..+
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHH
Confidence 34466666666666657778888999999854 799999999999999999999999999999997 999999988887
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++.++....+ ... ...+.++.|++.+..+|...+...+.+|++. +
T Consensus 218 ~~~~~~l~~~~~-------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~ 264 (310)
T TIGR01272 218 AVLLSIGAALTH-------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------S 264 (310)
T ss_pred HHHHHHHHHHcC-------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------h
Confidence 777765554432 111 2235557899999999999999999888654 3
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHH
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTAT 226 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~ 226 (577)
.+.++. ....+|+++.|.+.|.+.|..|.+..|++..+.
T Consensus 265 ~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 265 QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 333443 456799999999999999999988888865544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-10 Score=121.42 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=153.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchh--HHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY--RIYVISAA 105 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr--~~l~~~~~ 105 (577)
+.|.+..-++..++.+-+...+.....+|.++++|++..+...+.....+...+++++.|++.||+ |.| +++.++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 346677788888888889999999999999999999999999988899999999999999999997 999 88888887
Q ss_pred HHHHHHHHHHH--HhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh
Q 008106 106 IEFMGLLLLTV--QAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK 183 (577)
Q Consensus 106 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (577)
++.+..+.-.+ .++ ..+ ..+.+.+++.-++.|+..|...+..-++.+|+.|+++
T Consensus 358 ~~~~i~~~g~~G~~~~---~~g----------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----- 413 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPS---FFG----------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----- 413 (477)
T ss_pred HHHHHHHHHHHHhhhc---ccC----------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence 77543333322 111 000 1155667777788999999999999999999999998
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~ 237 (577)
.+..||++.+..-..+.+||.+.|.+.+..| -|.++....++.++++++++..
T Consensus 414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999887 8889888888877777776543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-09 Score=108.58 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc----------
Q 008106 144 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---------- 213 (577)
Q Consensus 144 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~---------- 213 (577)
+...+.++.++.|.|.+...+..++++++..|+++ +.+.+++.+....+|+.++|.+.+.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 67789999999999999999999999999999888 89999999999999999999999987631
Q ss_pred ------cchhHHHHHHHHHHHHHH
Q 008106 214 ------KGWQWGFGISTATILLSI 231 (577)
Q Consensus 214 ------~gw~~~f~~~~~~~~~~~ 231 (577)
..|+++|++.+++.++..
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~ 106 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLA 106 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 368999886555444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=124.37 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++...+..++.....+++..++|.|+++..|+++.++++....+.+...++.+++|+++||+ |+++....+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 4467777777777788889999999999998999999999999999999999999999999996 754433333322222
Q ss_pred ---HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 110 ---GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 110 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
+...+..... .+.+......++.|++..+..........|.+|+++ |+
T Consensus 330 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 380 (438)
T TIGR00712 330 VTIAVIVYWMNPA-----------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 380 (438)
T ss_pred HHHHHHHHHhcCC-----------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence 1111111110 022223333344454433222222345779999888 99
Q ss_pred hhHHHHHHHHhhhh-HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 187 AFFNYYVFCLSCGA-LIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 187 ~~~~~~~~~~~lG~-~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
++.++.+...++|+ +++|.+.|++.+..||...|.+..+..+++++..++.
T Consensus 381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888775 6899999999999999999987776665555544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=116.30 Aligned_cols=185 Identities=16% Similarity=0.085 Sum_probs=147.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+..|.+++..+...-++.++..++|.|+++++|.++.+++.+...+.....+..+.+|++|||+ |.+|+..+.....+
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 35589999999998889999999999999999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++..+..+..+.. .+..+....+...+.+++..|.-...+..++...+|++ -+..
T Consensus 296 ~~~~~l~~~~~~~------------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v 350 (417)
T COG2223 296 LAAALLSLFLTGF------------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAV 350 (417)
T ss_pred HHHHHHHcccccc------------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHH
Confidence 8888877653111 00123444444444455555555556777888888864 5888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
.++.....++|+..-|...+...+..| +...|++.....+.+.++.+..+.
T Consensus 351 ~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 351 TGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988888 899999888887777776655443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-10 Score=114.57 Aligned_cols=178 Identities=19% Similarity=0.171 Sum_probs=148.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.++...+..++...+.|...+++.+++++..|+|.+..+++...|.++..++..++|+++|| +.|+.+.....+..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3458888899999999999999999999999999999999999999999999999999999998 89999888888888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
+..+.+.+..+ +.+...+..++.|++.+........-+++..|+ . ++..
T Consensus 288 ~~~l~l~~~~~------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-~------~~~a 336 (394)
T COG2814 288 LALLALTFTGA------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD-A------ADLA 336 (394)
T ss_pred HHHHHHHHhcc------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-c------hHHH
Confidence 87777766542 445555666667777776655555566664343 3 7999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
.+++....|+|-.+|..++|.+.+++|+....++.++..++++.+.+...+
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988888777666544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=120.81 Aligned_cols=183 Identities=14% Similarity=-0.001 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 008106 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL 114 (577)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~ 114 (577)
.++..+........+..+.+. ..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.+++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~ 366 (481)
T TIGR00879 289 VVLQWFQQFTGINAIMYYSPT-IFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVL 366 (481)
T ss_pred HHHHHHHHHhCCeehHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444 4467899998888888888899999999999999997 99999999988888877777
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 194 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (577)
.+...... .+.+...+...+....+..+....+..+....++.|.+|+++ |++..++.+.
T Consensus 367 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~ 426 (481)
T TIGR00879 367 GILGASFV--------------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVA 426 (481)
T ss_pred HHHhhccc--------------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHH
Confidence 64221000 000000012222222222222222334666777899999988 9999999999
Q ss_pred HHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 195 CLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 195 ~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
..++|.+++|.+.+++.++.||++.|++.+++.+++.++.++..+
T Consensus 427 ~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 427 ANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 999999999999999999889999998887776666655554444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.4e-10 Score=117.05 Aligned_cols=169 Identities=12% Similarity=0.012 Sum_probs=132.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++...+..++....+......++.|++ +.|.++.+.+.+.+...+...+..++.|++.||+ |+|+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45666666677767777777788889985 5899999999988888888888899999999997 999999999988888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.++....+ +.+.+++..++.|++.+...+....++.+. ++++ +++..
T Consensus 283 ~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~ 330 (382)
T PRK11128 283 RWGLMGSTT-------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQ 330 (382)
T ss_pred HHHHHHhhh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHH
Confidence 777766554 566778888899999888777777777775 4454 67778
Q ss_pred HHHH-HHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 190 NYYV-FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 190 ~~~~-~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
+.+. ....+|..+||.++|++.|..|+. .|+..+++.++++++
T Consensus 331 ~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 331 ALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence 8765 556788899999999999998874 666555555544443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=122.65 Aligned_cols=173 Identities=15% Similarity=0.094 Sum_probs=137.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc-cchhHHHHHHHHH--
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF-FTTYRIYVISAAI-- 106 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~-~Grr~~l~~~~~~-- 106 (577)
+.++..++..++..+.++....+++.|++ ++|+++.+++.+.+...++..++.+++|+++||. +++|+...++..+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 45677777777888888888889999986 5799999999999999999999999999999973 2445444443333
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
..++.+++.+.. +.+.+++.+++.|++.+...+...+++.|.+|+++ ++
T Consensus 320 ~~l~~ll~~~~~-------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g 368 (455)
T TIGR00892 320 NGLTHLLCALAG-------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FS 368 (455)
T ss_pred HHHHHHHHHHhc-------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hh
Confidence 333344444332 45667788899999999999999999999999888 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHH
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNK-GWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~-gw~~~f~~~~~~~~~~~~~~ 234 (577)
+.+++++...++|..+||.+.|++.+.. +|++.|++.++..+++.+..
T Consensus 369 ~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 369 SAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred hHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999887 49999998887766555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.9e-10 Score=120.60 Aligned_cols=158 Identities=13% Similarity=0.009 Sum_probs=126.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.+...+...++....+.......|.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+.+.++..+..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4466666777777777666666778888878999999999988888888888889999999997 999999999888887
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++.+... ......+.+..++.|++.+...+....++.+..|+++ ++..+
T Consensus 340 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 391 (471)
T PRK10504 340 VSLLFMLVAL----------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGN 391 (471)
T ss_pred HHHHHHhccc----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchH
Confidence 7766655321 0023334455667788888888888899999999988 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
++.++..++|..+|+.++|.+.+..|+
T Consensus 392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 392 SLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999988766655
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=118.91 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=130.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANA-SNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
+.++...+..++....++... .+.|.|.++.+|.++.+.+.+.....++..++.++.|+++||+ |||+.+..+..+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 446666666777777776666 6788888878999999999999999999999999999999997 99999998877777
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++..+..+.++ +.+.+.+..++.|++.+...+...+++.|..|+++ |++.
T Consensus 289 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 338 (365)
T TIGR00900 289 LAILVVGLTPP------------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRV 338 (365)
T ss_pred HHHHHHHhhch------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 77776665431 25567777888999999988999999999999988 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKG 215 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~g 215 (577)
.++++...++|..++|.+.|++.+..|
T Consensus 339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 339 FGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=118.93 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH-H-H
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA-I-E 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~-~-~ 107 (577)
+.++.+.+..++.....+.+..+.+.|+++.+|+++.+.+.+.+.+.++..++.++.|+++||+.+||+....... . .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567777778888888888889999999999999999999999999999999999999999985234433322211 1 1
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++........ ..+.....+..++.|+..++..+....+..|.+|+++ |++
T Consensus 296 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 346 (379)
T TIGR00881 296 IVSLLVYWLNP-----------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGT 346 (379)
T ss_pred HHHHHHHhcCc-----------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHH
Confidence 11111111110 0023344455556666555555666678899999988 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGF 220 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f 220 (577)
..++++...++|..++|.+.|.+.+.+||+..|
T Consensus 347 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 347 AAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999999999998754
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-09 Score=112.56 Aligned_cols=171 Identities=14% Similarity=-0.029 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++...+..++....++......|.|+.+++|+++.+.++......++..++.++.|+++||+ |||+.+.++.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence 3456666666666666666667788899889999999999887777778889999999999997 999999999888888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..+........ ..+.+.++++.++.|+|.+...+......... ++++ |++..
T Consensus 294 g~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~ 346 (406)
T PRK15402 294 GLLLAALATVIS--------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVS 346 (406)
T ss_pred HHHHHHHHHHcc--------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHH
Confidence 877776543100 11345567777888888887766665555433 3355 89999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 228 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~ 228 (577)
+.+++...+|..+|+.+.+++.+..++....+..++..+
T Consensus 347 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 347 AAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 999999999999999999999888886655544444333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=122.13 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=124.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.++..++..++....++......+.|.+..++ ++.+.+.+.....+...++.++.|+++||+ |||+++.++.++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~ 298 (437)
T TIGR00792 221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMV 298 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 3456777777777777777665556566665566 556667777777888899999999999997 99999999988888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch-hhhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL-GRKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~ 187 (577)
++.++..+..+ +.+.+++..++.|++.+...+...++++|..|.++-. ....++.
T Consensus 299 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 354 (437)
T TIGR00792 299 LGYLIFFFAGS------------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGL 354 (437)
T ss_pred HHHHHHHHcch------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHH
Confidence 87777665321 3455666677888999988899999999998743211 1112688
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchh
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQ 217 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~ 217 (577)
.++++++...+|..+++.+.|++.+..||.
T Consensus 355 ~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 355 VYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999998777763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-10 Score=117.89 Aligned_cols=166 Identities=10% Similarity=0.007 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHH-HHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSK-FMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRI-YVISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~-l~~~~~~~ 107 (577)
+.+|...+..++....++++..++|.|+++ ..|.++.+++.......++..++.++.|+++||+ |||+. +....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 456777888888888999999999999976 3578888889998999999999999999999996 87775 33333333
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++..+..... +.........+.++|.....+.......|.+|+++ |+.
T Consensus 321 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~ 369 (412)
T TIGR02332 321 AAGWLLASATD-------------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAI 369 (412)
T ss_pred HHHHHHHHhcC-------------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHH
Confidence 33322221111 11111222223333333333444455577888888 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATI 227 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~ 227 (577)
++++.+...++|.+++|.+.|.+.+..| |++.|.+..++.
T Consensus 370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999999999999999875 999988766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-08 Score=104.23 Aligned_cols=128 Identities=17% Similarity=0.083 Sum_probs=86.2
Q ss_pred HHHHHHHhhhhcCC---Cchhh----hhHHHHHHHHHHHHHhHHHHhhhcccchhH-HHHHHHHHHHHHHHHHHHHhhcc
Q 008106 50 ASNLVLYLSKFMHF---SPSSS----ANIVTNFMGTAFLLALFGGFLADAFFTTYR-IYVISAAIEFMGLLLLTVQAHTR 121 (577)
Q Consensus 50 ~~~l~~yl~~~lg~---s~~~~----~~~~~~~~~~~~i~~~~~G~laD~~~Grr~-~l~~~~~~~~~~~~l~~~~~~~~ 121 (577)
....|+|+++..+- ++.+. +...+...+...+..|+.|.++|+. |+|| .+.+...+-.+.++++.+.++
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~-- 111 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP-- 111 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence 34678999887765 55444 3445556666777888999999997 8555 455555555556666666542
Q ss_pred CCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhH
Q 008106 122 SLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGAL 201 (577)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 201 (577)
..+.....+..++..++..+......+++.|..++++ -++..+.-+-..++|+.
T Consensus 112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~ 165 (438)
T COG2270 112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV 165 (438)
T ss_pred --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence 1145566666677889999999999999999999877 45544454445556666
Q ss_pred HHHHH
Q 008106 202 IAVTF 206 (577)
Q Consensus 202 igp~~ 206 (577)
+.-++
T Consensus 166 i~li~ 170 (438)
T COG2270 166 ILLIF 170 (438)
T ss_pred HHHHH
Confidence 55444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=113.62 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
.+......++.....+....+++.|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 45554445555555566667778899888999999999999999999999999999999997 99999999988888777
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchh-hhcccCCcccchhhhchhhhHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP-HGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
++.....+ +.+...+..++.++|.++..+.... ...+..+++. ++..
T Consensus 280 ~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~-- 327 (382)
T PRK10091 280 LMLFFFGG------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA-- 327 (382)
T ss_pred HHHHHHHh------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--
Confidence 65543321 2233444445555555443333332 3334333333 4433
Q ss_pred HHHHHHhhhhHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHH
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDN-KGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~-~gw~~~f~~~~~~~~~~~~~ 233 (577)
..+...++|..+||.+.|++.+. .||+..+.+.++..++.+..
T Consensus 328 ~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 328 GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 33566789999999999999885 68999999887665554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=116.22 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=128.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFM---HFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
|.++..++..++....+.....+.+.|+.+.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence 34555555555555555556567888887766 45556677788888888888899999999997 999999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++..+....+ +.+.+++.+++.|++.+........+..+..+++. ++
T Consensus 294 ~~l~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a 342 (396)
T TIGR00882 294 MSVRIIGSSFAT-------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA 342 (396)
T ss_pred HHHHHHHHHhcC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence 888777655543 45556777888888866555555556666667665 67
Q ss_pred hhHHH-HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 187 AFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 187 ~~~~~-~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
...+. ++....+|.++++.+.|++.+..||+..|.+.++..++..++
T Consensus 343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 76665 667889999999999999999999999999877766555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-08 Score=106.77 Aligned_cols=345 Identities=14% Similarity=0.094 Sum_probs=202.4
Q ss_pred HHHHHHhhhhcCCCchhh-hhHHHHH----HHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008106 51 SNLVLYLSKFMHFSPSSS-ANIVTNF----MGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKP 125 (577)
Q Consensus 51 ~~l~~yl~~~lg~s~~~~-~~~~~~~----~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 125 (577)
.....+.....+.+.... +...... .+...+..+.-|.++|++ |||..+.+......+..+.+.+..
T Consensus 42 ~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~------- 113 (463)
T KOG2816|consen 42 TNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG------- 113 (463)
T ss_pred hhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH-------
Confidence 455556555555544333 2233333 456778889999999997 999999999998888888877742
Q ss_pred CCcccccCCCccCCCCCchHHHHHHHHHHHH--hhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHH
Q 008106 126 PTCVLEDGIASCREDEGGKAVMLFAGLYIVA--LGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIA 203 (577)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ig 203 (577)
+.+++ +.+ -+.+.......++++|...+++ |...+++.+.....+..++
T Consensus 114 --------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~ 164 (463)
T KOG2816|consen 114 --------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIG 164 (463)
T ss_pred --------------------HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHH
Confidence 22222 322 3345566778889999999998 9999999999999999999
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCC-chhHHHHHHHHHHHhhccCCCCCCcccccccCC
Q 008106 204 VTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGS-PLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSP 282 (577)
Q Consensus 204 p~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (577)
|.+++.+.+..|....|.++.+..++..+...+..|+-..++.++. +. ...+++
T Consensus 165 p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~-----------------~~~~~~-------- 219 (463)
T KOG2816|consen 165 PALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL-----------------RELTPG-------- 219 (463)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc-----------------cccCCC--------
Confidence 9999999999999999999999888877766655543322221110 00 000000
Q ss_pred CCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhH
Q 008106 283 TCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFS 362 (577)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (577)
..+ +..... +++.... ....|..+.+. +..... ..-...+..-..
T Consensus 220 ----~~~--------------~~~~~~-------------~~~~~~~--~~~~r~~l~l~-l~~~~~-~~~~~~~~~~~~ 264 (463)
T KOG2816|consen 220 ----SLD--------------SSHVAD-------------AFQSLTK--VGPDRLLLLLL-LVAFLS-SLPEAGGASDVL 264 (463)
T ss_pred ----ccc--------------chhhhh-------------hhhhhcc--cCCCccchHHH-HHHHHH-HHHHhcCceeEE
Confidence 000 000000 0000000 01112111111 111111 011111111000
Q ss_pred HhhhhhccccCCcccc-CCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008106 363 VQQAATMNTKLGSLKV-PPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEI 441 (577)
Q Consensus 363 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~ 441 (577)
...++..++ |+. .-+.+.....+...+. ..+..++..+.. ...+.+..|+..-.+..++.++..
T Consensus 265 ---~~yl~~~f~-w~~~~~s~~~~~~~~~~~i~----~l~~~~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~- 329 (463)
T KOG2816|consen 265 ---LLYLKAKFG-WNKKEFSDLLSLVSILGIIS----QLLLLPLLSSIL------GEKRLISLGLLSEFLQLLLFAFAT- 329 (463)
T ss_pred ---EEEEeeecC-cCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhc-
Confidence 011111111 110 1111222222222222 222233333321 222357788888888888888742
Q ss_pred HHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008106 442 KRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSI 521 (577)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~ 521 (577)
+ .|+...............|...+++..+..++.+|+..++......+++.+++.+.+.
T Consensus 330 --------------------~-~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 330 --------------------E-TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred --------------------c-chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 2 2444445555566668889999999999999999999999999999999999999999
Q ss_pred hhhcccc
Q 008106 522 VNNITST 528 (577)
Q Consensus 522 ~~~~~~~ 528 (577)
+...+..
T Consensus 389 i~~~t~~ 395 (463)
T KOG2816|consen 389 IFALTLD 395 (463)
T ss_pred HHHHHHH
Confidence 9877643
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=114.24 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHH-HHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFM-GTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
++.+++..++..........+.+.|+.+++|+++++.+++.+... ++..++.+++|++.||+ |||+.+.++.++..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444444445544433333345556778889999999999886654 45788999999999997 9999988877776665
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHH----HHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGL----YIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+.+......+ .+.+.+.+.. +..|++.+...+....++.+.+|.++ +
T Consensus 290 ~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~- 341 (402)
T PRK11902 290 NLGYWVLAVTP---------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y- 341 (402)
T ss_pred HHHHHHHHhcC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H-
Confidence 44432211100 0233344333 34456666666777777777777554 4
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
+.+....++|..+++.++|++.+..||+..|.+.+++.++++.+.+...+
T Consensus 342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444446777766678999999999999999988887777666554443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-08 Score=109.25 Aligned_cols=162 Identities=18% Similarity=0.154 Sum_probs=120.3
Q ss_pred HHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc--cc--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008106 52 NLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF--FT--TYRIYVISAAIEFMGLLLLTVQAHTRSLKPPT 127 (577)
Q Consensus 52 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~--~G--rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 127 (577)
....|+++++|+++.+...+.+...+...+-+ +.|.++|-+ +| ||+-++++.++.+++...++..+..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 34568899999999998888777776665555 569999997 34 5666666776666666655554311
Q ss_pred cccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHH
Q 008106 128 CVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 207 (577)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~ 207 (577)
..+.....+..++..+|........-+++.|...++.. . |+...++.+....+|.+++..+.
T Consensus 83 --------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~-~---~g~lqS~~~~~~~~G~lv~~~l~ 144 (433)
T PF03092_consen 83 --------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE-S---RGDLQSFVWGVRSVGSLVGSLLS 144 (433)
T ss_pred --------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc-h---hHHHHHHHHHHHHHHHHHHHHhh
Confidence 11344555666778899999999999999999876541 1 78888899999999999999999
Q ss_pred HHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 208 VWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 208 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
|.+.+..+++..|.+.+++..+..+..++..+
T Consensus 145 G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 145 GPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999887776655544444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=116.98 Aligned_cols=173 Identities=10% Similarity=-0.013 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhH-------HHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYR-------IYVISA 104 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~-------~l~~~~ 104 (577)
+|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ .+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 45555555555666667778899999999999999999999999999999999999999996 8762 222222
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 105 AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++..++.++..... +.+...+..++.+++.+...+...+++.+..| +.
T Consensus 333 ~l~~i~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------ 380 (476)
T PLN00028 333 TLGGVFCIWLGRAN-------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------ 380 (476)
T ss_pred HHHHHHHHHhcccc-------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence 22222222222221 23334444455555554444555556666654 44
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
|+...++.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 889999887777778777776654 22334699999988887777766665554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=111.93 Aligned_cols=176 Identities=17% Similarity=0.108 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHH-HHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
.++..+...++..........+.+.|+.+ .|+++++.+.+...... ...++.+++|++.||+ |+|+.+.++.++..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 35556666667777777777888889875 79999999998887754 5567788999999997 999999988776544
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCc-ccchhhhchhhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE-TTQLGRKQRSAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~ 188 (577)
..+......... . ......+.....+.+++.|...+...+.+.+..++ +. +++.
T Consensus 287 ~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~ 341 (390)
T TIGR02718 287 LALLWFAQAAFW-L------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTD 341 (390)
T ss_pred HHHHHHHHHHcc-c------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHH
Confidence 333222211100 0 00222333444455566666667777777777665 55 8999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
+++.+...++|..+||.++|++.+..||+..|.+.++..++++..
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877766655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-11 Score=135.13 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 008106 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL 114 (577)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~ 114 (577)
+++..+.. ....+.+....+-++++++++.+++|++.+.+-++..+..++..++.+|. -|-|.+-+|.++.++|++++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 33344444 66777777777889999999999999999999999999999999999996 88899999999999999999
Q ss_pred HHHhhccCCCCCCcc-----cccCC-Ccc-------------------CCCCCchHHHHHHHHHHHHhhcccccccchhh
Q 008106 115 TVQAHTRSLKPPTCV-----LEDGI-ASC-------------------REDEGGKAVMLFAGLYIVALGVGGIKGSLAPH 169 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~-----~~~~~-~~~-------------------~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~ 169 (577)
++.+...-...++-. +.+.+ ..| ++........++++.++.|+|....++...++
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 986532211110000 00001 123 01222345788999999999999999999999
Q ss_pred hcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc---------------------ccc-hhHHHHHHHHHH
Q 008106 170 GAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED---------------------NKG-WQWGFGISTATI 227 (577)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~---------------------~~g-w~~~f~~~~~~~ 227 (577)
+=|..+++. -+...|+++....+|.++|.++++.+.. +.| |+.+|.+.+++.
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999888 7888999999999999999888876531 124 889999888776
Q ss_pred HHHHHHHHhcCccccc
Q 008106 228 LLSIPIFLLGSPFYRN 243 (577)
Q Consensus 228 ~~~~~~~~~~~~~~~~ 243 (577)
++..+.+++.++++++
T Consensus 240 ~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ----------------
T ss_pred HHHHHHHHcCCccCCC
Confidence 6655555555544443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-09 Score=112.95 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008106 42 ENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTR 121 (577)
Q Consensus 42 ~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~ 121 (577)
.....+.+..++|.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++...... .
T Consensus 243 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (426)
T PRK12307 243 IFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-D 319 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-c
Confidence 333444566788888875 699999999888888899999999999999997 9999999888776665554443221 0
Q ss_pred CCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhH
Q 008106 122 SLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGAL 201 (577)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~ 201 (577)
....+....+..+++..+..+..+.++.|.+|++. |++++++.+...++|+.
T Consensus 320 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 320 ----------------------NYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ----------------------cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 11112122222223333344566778899999988 99999999999999999
Q ss_pred HHHHHHHHhccccchhHHHHH
Q 008106 202 IAVTFVVWIEDNKGWQWGFGI 222 (577)
Q Consensus 202 igp~~~~~l~~~~gw~~~f~~ 222 (577)
++|.+.|++.+..|+....++
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 999999999998887654433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=114.56 Aligned_cols=178 Identities=15% Similarity=0.073 Sum_probs=124.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHH--------H
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRI--------Y 100 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~--------l 100 (577)
++.+|...+..++....++.+..++|.|+.+.+|++..+.++..+...++..++.+++|+++||+ ++|+. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999999999999999996 65432 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (577)
..+......+..+...... . .+....++...+.+.+.++..+.......|..|. .
T Consensus 339 ~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-- 393 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYL-S---------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHHc-C---------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--
Confidence 1111111111112111110 0 0222333344444555554445555555566664 4
Q ss_pred hhhchhhhHHHHHHHHhhhhHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHHHHHh
Q 008106 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK---GWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 181 ~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
++...++.+...++|+.++|.+.|++.+.. +|+..|.+.++..+++.+...+
T Consensus 394 ----~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 ----LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 899999999999999999999999987653 3888888887777766655443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=113.33 Aligned_cols=148 Identities=16% Similarity=0.053 Sum_probs=115.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..+.+.+..++....++.+..++| ++.+++|.++.+.+.+.+...++..++.++.|+++||+ |||+.+... .+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~-~~~~~ 326 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLL-LLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHH-HHHHH
Confidence 3345555566677777777777887 66778999999999999999999999999999999997 999554443 33333
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
...++....+ +.....+..++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 327 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 376 (398)
T TIGR00895 327 FAVLVGSTLF------------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGV 376 (398)
T ss_pred HHHHHHHHhh------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHH
Confidence 3333322111 34556677788899999889999999999999998 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHh
Q 008106 190 NYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l 210 (577)
++.+...++|..+||.+.|++
T Consensus 377 g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 377 GWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999875
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=116.02 Aligned_cols=172 Identities=21% Similarity=0.169 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
+..+++..++.++....+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+|+ ++++.+..+.++++++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence 33444444455555555566789999999999999999999999999999999999999996 99999999999999888
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+.+++.+ +.+...+..++.|++.........+.+.+..|++. ||+.+++
T Consensus 299 ~~lal~~-------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 299 LLLALSP-------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred HHHhcch-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 8888875 56677778888999988888888999999999999 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
+++..+.+..+|..+.|.+.+.+|-+..+.++++..+++.++.+
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887776555554443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=116.86 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=130.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++...+..++..+.+++...++|.|+++.+|.++.+++.......++..++.++.|++.||+ |||+.+.++..+.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 4566677777888888888889999999999999999999999999999999999999999997 999999999888888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++.+... ...+.+.+....++.|+|.+...+.......+..|+++ |+.+.
T Consensus 334 ~~~~~~~~~~---------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~ 386 (485)
T TIGR00711 334 GFYWRAFTFT---------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGS 386 (485)
T ss_pred HHHHHhccCC---------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHH
Confidence 8877663210 01134556666778899998887777777788889888 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcccc
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNK 214 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~ 214 (577)
++++...++|+.+|+.+.+.+.++.
T Consensus 387 ~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 387 SLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998886643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=109.40 Aligned_cols=153 Identities=18% Similarity=0.043 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++.+.+..++....++.+..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+.++.++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV 275 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence 445666666667778888888999999974 7999999999999999999999999999999962456677777777777
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCc-ccchhhhchhhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE-TTQLGRKQRSAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~ 188 (577)
+.+++.+..+ + ... ...++.|++.|...+...+.+.+..++ ++ ++..
T Consensus 276 ~~~~~~~~~~------------------------~-~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~------~g~~ 323 (355)
T TIGR00896 276 GLCGLLFAPM------------------------H-GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ------AAAL 323 (355)
T ss_pred HHHHHHHhhh------------------------h-HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH------HHHH
Confidence 7776665431 1 111 134678999998888877777665554 44 6888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKG 215 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~g 215 (577)
+++.+...++|..++|.+.|++.+++|
T Consensus 324 ~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 324 SAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888999999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=112.69 Aligned_cols=174 Identities=13% Similarity=-0.021 Sum_probs=130.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSK--FMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
|.++...+..++..+.+.....+.+.|+.. +.+.+....+.+.....+.....+.+.|++.||+ ++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence 445666666677666666666677777653 3455555566676666666667778889999997 9999999998888
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.....+..+ +.+.+.+...+.++|.+...|...+.+.+..|++. |++
T Consensus 285 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 285 VIGLVGFIFSGN------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHHHHcch------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 888777665321 44556667778899988878888889999999887 888
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
.++... ...+|..+||.++|++.+..|....|.+.++...++.++..
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 887654 56689999999999999999988888876666555555444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-09 Score=112.41 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYL-SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
.++...+..++.....++...+++.|+ ++.+|.++.+++.....+.++..++.+++|+++||+ |||+++..+.++..+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~ 337 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344555556666677777778888896 567899999999999999999999999999999997 999999988777766
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+.++..+.+ +. ..+....+.|++.+...|...+...|.+|++. +.+.
T Consensus 338 ~~~~~~~~~-------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as 384 (438)
T PRK10133 338 LCLISAFAG-------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGS 384 (438)
T ss_pred HHHHHHHcC-------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccch
Confidence 655554432 11 12445677899999999999999999988643 4444
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPI 233 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~ 233 (577)
++..+ ..+|+.++|.+.|++.+..| -+..|++..+..+..+..
T Consensus 385 ~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 385 SFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred hHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 44433 34688889999999999887 678888766655544443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.2e-09 Score=108.88 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.++...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|+++||+ |||+.+.++..+..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS 285 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 355555556666667777777888999999999999999999999999999999999999997 9999999988888877
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+++....... ......++....+.|++.+...+.......|..| ++ |++..+
T Consensus 286 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 338 (385)
T TIGR00710 286 AVLLEITAILG--------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASA 338 (385)
T ss_pred HHHHHHHHHhc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHH
Confidence 76665543100 0123445555667888888888888888888876 45 788999
Q ss_pred HHHHHHhhhhHHHHHHHHHhccccchhHHHHHH
Q 008106 191 YYVFCLSCGALIAVTFVVWIEDNKGWQWGFGIS 223 (577)
Q Consensus 191 ~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~ 223 (577)
+++.....++.+.+.+.+.+.+..+|...+...
T Consensus 339 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 339 LFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccccChHHHHHHHH
Confidence 877766554444444555665555555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=111.11 Aligned_cols=161 Identities=10% Similarity=-0.011 Sum_probs=113.7
Q ss_pred HHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 008106 50 ASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCV 129 (577)
Q Consensus 50 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 129 (577)
..+.|.+ .+++|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+
T Consensus 291 ~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------- 360 (479)
T PRK10077 291 LYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------- 360 (479)
T ss_pred HHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------
Confidence 3344444 457898887777777777788889999999999997 999999999999888887776542101
Q ss_pred cccCCCccCCCCCchHHHHHHHHHHHHhhccc-ccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHH
Q 008106 130 LEDGIASCREDEGGKAVMLFAGLYIVALGVGG-IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 208 (577)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~ 208 (577)
. ..........+.+++.+. ..+....++.|.+|+++ |+.++++.+...++|.++++.+.+
T Consensus 361 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 361 ------------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred ------------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 0 111223333444444433 23677899999999988 999999999988888888865554
Q ss_pred ------HhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 209 ------WIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 209 ------~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
++.+..||+..|++.++..+++.+..++..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 422 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4446788888888877665555555544443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-09 Score=114.87 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhh------------HHHHHHHHHHHHHhHHHHhhhcccchhHHHHHH
Q 008106 36 LAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN------------IVTNFMGTAFLLALFGGFLADAFFTTYRIYVIS 103 (577)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~ 103 (577)
....++..+.+|++..+.|.+++ +.|++..+++. ......++..++.++.++++||+ |||+.++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence 33445566788888888888885 67887653321 12223344556778899999997 999999998
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh
Q 008106 104 AAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK 183 (577)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (577)
.++.+++.+++.+..+.. + +...+....+...++..+..+....+.+|.+|++.
T Consensus 372 ~~~~~~~~~~l~~~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~----- 425 (502)
T TIGR00887 372 FFILTVLFFVLGFAYNHL-------------------S--THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY----- 425 (502)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------c--hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH-----
Confidence 888777776665532100 0 11111111122222223334566777899999999
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHhccc----------cchhHHHHHHHHHHHHHHHHH
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWIEDN----------KGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l~~~----------~gw~~~f~~~~~~~~~~~~~~ 234 (577)
|+++.++.+....+|++++|.+.+++.+. .|+...|++.++..+++.+..
T Consensus 426 -R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 426 -RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998773 344556666666555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=115.76 Aligned_cols=154 Identities=7% Similarity=-0.011 Sum_probs=130.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.+....+..++....+++...++|.|+++.+|.++.+++.......++..++.++.|++.||+ |||+.+..+.++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4566677777788888888888999999999999999999999999999999999999999997 999999999888888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++..... ..+.+......++.|+|.|...+.....+.+..|+++ ++.+.
T Consensus 338 ~~~~l~~~~~----------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~ 389 (495)
T PRK14995 338 SFYGLAMTDF----------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAG 389 (495)
T ss_pred HHHHHHHhcC----------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHH
Confidence 7776654321 0133445667788899999988888888889999888 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcc
Q 008106 190 NYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
+++++..++|..+|+.+.+.+.+
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888754
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=110.40 Aligned_cols=207 Identities=15% Similarity=0.165 Sum_probs=154.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+.+..+.....+......+......+-+.++++++.++.|++.+.+-++..+...+..|.+-|. =|-|.+-+|.++.+
T Consensus 95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~ 173 (735)
T KOG3626|consen 95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG 173 (735)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence 34455555555555555557778888889999999999999999999999999999999999996 88899999999999
Q ss_pred HHHHHHHHHhhccCCCC--------CCccc-----c---c-CCCccC----------CCCCchHHHHHHHHHHHHhhccc
Q 008106 109 MGLLLLTVQAHTRSLKP--------PTCVL-----E---D-GIASCR----------EDEGGKAVMLFAGLYIVALGVGG 161 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~--------~~~~~-----~---~-~~~~~~----------~~~~~~~~~l~~~~~l~g~g~g~ 161 (577)
++.++.++.+...--.. ..... + + ....|+ +.+..-..+++.+.++.|+|...
T Consensus 174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp 253 (735)
T KOG3626|consen 174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP 253 (735)
T ss_pred HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence 99999988643221000 00000 0 0 001122 12222345788999999999999
Q ss_pred ccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc------------------ccc-hhHHHHH
Q 008106 162 IKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED------------------NKG-WQWGFGI 222 (577)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~------------------~~g-w~~~f~~ 222 (577)
+++...+++=|-..+++ -...+++.+....+|.++|.++++++.. +.| |+.+|++
T Consensus 254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999988888777 7889999999999999999999987631 224 8999999
Q ss_pred HHHHHHHHHHHHHhcCcccc
Q 008106 223 STATILLSIPIFLLGSPFYR 242 (577)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (577)
.+.+.++..+.+++..++++
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 99888777776666655444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-08 Score=105.25 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++...+..++....+++...++++++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+..+. +..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence 3455555555666666666666765555568899999999999999999999999999999994 5544444 4444333
Q ss_pred H-HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 110 G-LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 110 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
. .++..... +.+.+.+..++.|++.+...+...+.+.+..|++ +++.
T Consensus 294 ~~~~l~~~~~-------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~ 341 (394)
T PRK10213 294 SALVLTLWGS-------------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA 341 (394)
T ss_pred HHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence 3 33333322 3456667778889999988888888888888743 4566
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLS 230 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~ 230 (577)
.+......++|..+||.++|++.+..|++..+...++..++.
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 667777889999999999999999999988888776554433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-08 Score=99.04 Aligned_cols=156 Identities=14% Similarity=0.084 Sum_probs=110.1
Q ss_pred hhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCcc
Q 008106 58 SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASC 137 (577)
Q Consensus 58 ~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (577)
.++.|++..|.+.+.....+...+..++.|.++||+ |||+.-+...+++++++++.-..
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~~-------------------- 119 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHSS-------------------- 119 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 368999999999999999999999999999999997 99999999999999888754332
Q ss_pred CCCCCchHHHHHHHHHHHHhhcccccccchhhh-cccCCcccchhhhchhhhHHHHH-HHHhhhhHHHHHHHHHhccccc
Q 008106 138 REDEGGKAVMLFAGLYIVALGVGGIKGSLAPHG-AEQYDETTQLGRKQRSAFFNYYV-FCLSCGALIAVTFVVWIEDNKG 215 (577)
Q Consensus 138 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~lG~~igp~~~~~l~~~~g 215 (577)
+...++++|++.|++......+-.+-+ .|.-....+.+. .+.-++... +...+-++++.++.-++.+..|
T Consensus 120 ------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 120 ------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 678899999999999998877666544 333222111111 344444333 2223334444555556666555
Q ss_pred h--hHHHHHHHHHHHHHHHHHHhcCcccc
Q 008106 216 W--QWGFGISTATILLSIPIFLLGSPFYR 242 (577)
Q Consensus 216 w--~~~f~~~~~~~~~~~~~~~~~~~~~~ 242 (577)
. ..+|..+.++.+++.+++....++..
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 4 78999988888777776665555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=108.56 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
++...+..+.....+.....++|.|+++..+ ++.+.+++.+...+....+....+++.||.++.++.+..+.++..++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 3433333333333333345678888876655 677788887776665554444445555543477777788888888887
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
.++...+ +.+.+.+..++.+++.+...|...+++.|..|+++ |++.+++
T Consensus 289 ~~l~~~~-------------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~ 337 (400)
T PRK11646 289 FPIGMVS-------------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGF 337 (400)
T ss_pred HHHHHhh-------------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhH
Confidence 7766654 34445556677788888888888999999999998 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhcccc---c-hhHHHHHHHHHHHHHHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNK---G-WQWGFGISTATILLSIPI 233 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~---g-w~~~f~~~~~~~~~~~~~ 233 (577)
++...++|..+||.+.|++.+.. + ....|.+.++..++....
T Consensus 338 ~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 338 SRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 2 345555545444444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=105.31 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=148.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.+..-++..++.+=+.-.+......|...++|++..+..++.....+...+++++.|+++||+ |-|+++.++++++.+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 3566666677776666677788888999999999999999999999999999999999999996 999999999999988
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
.++...+.. ....+.+.-++.|...|+..+..-++.++..|+++ -++.|
T Consensus 331 ~~~~~~~~~-------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fF 379 (438)
T COG2270 331 AALYLIFLE-------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFF 379 (438)
T ss_pred HHHHHHHcc-------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------cccee
Confidence 877776643 22335555577899999999999999999999998 89999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
|+|.+.....+.+||.+.+.+.+.+| -|..+....++..+++++++..+
T Consensus 380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence 99999999999999999999988776 67777777777777766655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=121.68 Aligned_cols=164 Identities=10% Similarity=0.034 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCch-hhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPS-SSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
+.++.+++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence 3455566666666666677778899999999999999 999999999999999999999999997 99999998888888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+++.+.. +.+.+++..++.|++.+...+...+++.+..|++. |+++
T Consensus 311 ~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~ 359 (1146)
T PRK08633 311 LSLFLLPTAP-------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKV 359 (1146)
T ss_pred HHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhh
Confidence 7777776654 45566777788899999888889999999999998 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcc-ccchhHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTA 225 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~-~~gw~~~f~~~~~ 225 (577)
+++.++..++|.++++.+++.+.. .+++...|++.+.
T Consensus 360 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 360 LAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999888877776644 2345555554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=109.67 Aligned_cols=145 Identities=16% Similarity=0.057 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHH-HHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFM-GTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
.++.+.+..++..+.++....+++.|+++ +|+++.+.+.+.+... +...++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 36667777777888889999999999986 9999999998887765 56778999999999997 999999999888877
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..+..+..+.... .+ ....+.+.+....++.+++.+...+...+++.|.+|+++ |++.+
T Consensus 288 ~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 347 (356)
T TIGR00901 288 TNAGFVWLASNGHH-------------DG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQM 347 (356)
T ss_pred HHHHHHHHHhcCcc-------------cc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHH
Confidence 76655543210000 00 000134566777788899999999999999999999999 99999
Q ss_pred HHHHHHHh
Q 008106 190 NYYVFCLS 197 (577)
Q Consensus 190 ~~~~~~~~ 197 (577)
++++...|
T Consensus 348 g~~~~~~~ 355 (356)
T TIGR00901 348 ALLSSLSA 355 (356)
T ss_pred HHHHHHHh
Confidence 99877655
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=121.76 Aligned_cols=186 Identities=10% Similarity=-0.076 Sum_probs=137.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+.++.+.+..++.++.++.+..++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~ 302 (1140)
T PRK06814 224 DKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG 302 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence 35677788888888888888888999999999999999999999999999999999999999986 77777776666666
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++.+.+.+... .....+.. ..-..--....+.+.+.+..++.|++.+...+...+++.+.+|++. ||+.
T Consensus 303 ~~~~~l~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v 371 (1140)
T PRK06814 303 LFGLDLAFASS-SVPAEPAQ----LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV 371 (1140)
T ss_pred HHHHHHHhccc-cccccccc----ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence 55554443200 00000000 0000000000144566777888899999999999999999999999 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcc-ccchhHHHHHHHHH
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTAT 226 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~-~~gw~~~f~~~~~~ 226 (577)
++..++..++|..+++++.+.+.+ ..++...|++.++.
T Consensus 372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999999999998874 44666666654443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-08 Score=103.46 Aligned_cols=185 Identities=11% Similarity=0.044 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..|++++..++..-.|.++..++|.|+++.+. ............+...+..+++|+++||+ |+||++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 347888888888888888888899999987663 33333233445677888999999999997 999999999887777
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcc------------
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDET------------ 177 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~------------ 177 (577)
+........ +. ....+.+.+.+..+.+.++.|.-..++..++.+.+|+.
T Consensus 329 ~~~~~~l~l--p~-----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 329 FSALLFLTL--PG-----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHHHHHHHh--cc-----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 664433221 10 01124555555555555566666667777787877741
Q ss_pred ---cchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHh
Q 008106 178 ---TQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 178 ---~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~ 236 (577)
....+++-+...|+......+|+.+-|.+.|...+..| +...|+...+..++.+++-|.
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01112235677788888889999999988888777655 788888777766665555444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.2e-09 Score=108.25 Aligned_cols=144 Identities=23% Similarity=0.281 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-chhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFS-PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
+|.+....++..+.++....++|.|+.+.+|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+...+......++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 286 (352)
T PF07690_consen 208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG 286 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence 444566666666777888899999999999999 78999999999999999999999999996 9988888887777776
Q ss_pred HHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 111 LLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
.+.+.+..... +....+...++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 287 ~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g 338 (352)
T PF07690_consen 287 ALGLLLLPFSS----------------------SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG 338 (352)
T ss_dssp HHHHCCSHHHC----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred HHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 66665443211 34556667788899999999999999999999998 999999
Q ss_pred HHHHHHhhhhHHHH
Q 008106 191 YYVFCLSCGALIAV 204 (577)
Q Consensus 191 ~~~~~~~lG~~igp 204 (577)
+.+...++|..+||
T Consensus 339 ~~~~~~~~~~~igP 352 (352)
T PF07690_consen 339 LFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-08 Score=101.63 Aligned_cols=167 Identities=13% Similarity=0.003 Sum_probs=114.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchh---HHHHH-HHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTY---RIYVI-SAA 105 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr---~~l~~-~~~ 105 (577)
+.+|.+.+..++....+|++..|+|.|++ +.|++.. .+.......+... +..++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 56788889999999999999999999996 4677754 4555444444444 4457888885 543 33232 333
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
+.++.....++.. +....++...+.+++.....+...++.+|.+|++. |
T Consensus 266 ~~a~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------r 314 (368)
T TIGR00903 266 LIAAFFLALAFEL-------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------H 314 (368)
T ss_pred HHHHHHHHHHHcc-------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------c
Confidence 3333333333222 12233444455666677666778889999999999 9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
+++.++.+...++|+..+|.+.+.+.. |.+..|.+.++..+++.+..+
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887763 666677766666555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-08 Score=104.25 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=134.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.+..+++..++..+.........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+|+.+..+.++.+
T Consensus 224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA 301 (428)
T ss_pred cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence 356778888888888888877788888888888877 5567777788888999999999999997 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh-hhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG-RKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~ 187 (577)
++.++..+... .+.+.+++...+.|++.+...+...++++|..+.++-++ +.+.|.
T Consensus 302 ~~~~~~~~~~~-----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 302 LGFLLLFFLGP-----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHHHh-----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 99988877641 166788888899999999999999999999999765221 223577
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
.++.+.+...+|..+++.+.+.+.+..|+
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 78889999999999999998887665554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=100.03 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..+..++..++.....+....+.|.++.+.+|+++.+.+.+.....+...++.++.|+++||+ |||+.+.++..+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFI 272 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 3455555556666666677777778888888999999999999999999999999999999996 999999998876554
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
..+........+ .+.+...++..+.+.+.+...+.....+.|..| +. +++..
T Consensus 273 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 273 MGIWLVVSALLD---------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 333322211000 023334444444444555555555666777776 45 77787
Q ss_pred HHHHHH-HhhhhHHHHHHHH
Q 008106 190 NYYVFC-LSCGALIAVTFVV 208 (577)
Q Consensus 190 ~~~~~~-~~lG~~igp~~~~ 208 (577)
+..... ..+|+.+++.+.+
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 775443 4566777765544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=107.71 Aligned_cols=164 Identities=12% Similarity=0.125 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.+....++.++....++......+.|+++.+|.++...++......++..++.++.++++||+ |+|+.+.++.++..
T Consensus 227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~ 305 (448)
T PRK09848 227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGT 305 (448)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 35567777777777888777777777788888998776655555544566778899999999997 99999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh-hhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG-RKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~ 187 (577)
++.+++.+.+. .+.+.+++..++.++|.+...+...++.+|..|.++-+. ..+++.
T Consensus 306 i~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~ 362 (448)
T PRK09848 306 CGYLLFFWVSV-----------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL 362 (448)
T ss_pred HHHHHHHHcCc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence 88777765321 145556677788899999999999999999988654111 112588
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
.++.+++...+|..+|+.+.+.+.+..||
T Consensus 363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999999999999998887655554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=107.90 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc--hhHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT--TYRIYVISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rr~~l~~~~~~~ 107 (577)
+.++.+.+...+..+.++.....++.|.. ..|.+..+++.+.+...+...++.++.|+++|+. . ++....++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 66888888888899999888888999987 9999999999999999999999999999999996 7 444556666666
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+.+++.+ +.+.+++.-.+.|+..|......+..+.|..+.++ ...
T Consensus 376 gl~~~~~p~~~-------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~ 424 (509)
T KOG2504|consen 376 GLARLFLPFAT-------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSN 424 (509)
T ss_pred HHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cch
Confidence 66776777765 56778888889999999998888889999999998 999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
++|+..+...+++.+||.+.|++.+..| |...|+..++..+++....+..+
T Consensus 425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999888 99999999888877776555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.6e-08 Score=101.12 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
.+...+...+..........+.|.|+++++|+++.+.+.+.....+...++.++.|++.||+ |||+.+.++..+..++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 283 (392)
T PRK10473 205 FLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAG 283 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33333333333334444555667788889999999999988889999999999999999996 99999999998888888
Q ss_pred HHHHHHh
Q 008106 112 LLLTVQA 118 (577)
Q Consensus 112 ~l~~~~~ 118 (577)
+++.+..
T Consensus 284 ~~~~~~~ 290 (392)
T PRK10473 284 ITLALSP 290 (392)
T ss_pred HHHHHHH
Confidence 7777654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=99.08 Aligned_cols=155 Identities=11% Similarity=-0.065 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 008106 41 LENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHT 120 (577)
Q Consensus 41 ~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~ 120 (577)
+...........++.|+++.+|.++.+.|.+.+...++..++.++.+++.||+ ++|+.+..+. +.++...+..+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~-~~~~~~~~~~~~~-- 291 (393)
T PRK11195 216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGI-LMGLVVLLMALQH-- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHH-HHHHHHHHHHHHh--
Confidence 33444555556677889999999999999999999999999999999999996 9998888775 3334333333332
Q ss_pred cCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhh
Q 008106 121 RSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGA 200 (577)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~ 200 (577)
+.+...+..++.|++.+...+...+.+.|..|++. ++++.++..++..++|.
T Consensus 292 -----------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~ 343 (393)
T PRK11195 292 -----------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAM 343 (393)
T ss_pred -----------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHH
Confidence 34455566678899988888888888888755432 16899999999999999
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHH
Q 008106 201 LIAVTFVVWIEDNKGWQWGFGISTATIL 228 (577)
Q Consensus 201 ~igp~~~~~l~~~~gw~~~f~~~~~~~~ 228 (577)
.++..+.+.+ +..|=+..+.+..+..+
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 9999888866 55675555555444333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-08 Score=107.03 Aligned_cols=131 Identities=16% Similarity=0.024 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHH
Q 008106 74 NFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLY 153 (577)
Q Consensus 74 ~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (577)
...+....+.++.++++||+ |||+.+.++.++.+++.+++.+.++. ..+...+..+
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~~~ 418 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPVD-----------------------LYFLRTALAV 418 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCCC-----------------------chHHHHHHHH
Confidence 34556677888999999996 99999999998888887777665310 1133344445
Q ss_pred HHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 154 IVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 154 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
+.+++.+...+....+.+|.+|++. |+.++++.+....+|++++|.+.+ +. ..++..++.+.++..+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence 5566666667788899999999998 999999999999999999999988 43 355666777666665555444
Q ss_pred HHh
Q 008106 234 FLL 236 (577)
Q Consensus 234 ~~~ 236 (577)
.++
T Consensus 491 ~~~ 493 (505)
T TIGR00898 491 TLF 493 (505)
T ss_pred HHc
Confidence 443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-07 Score=98.70 Aligned_cols=160 Identities=9% Similarity=-0.041 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
.+...+...+....++....+.|.|++ +.|+++.+.+.......++..++..+.+++.||+ |+|+.+....+..+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 205 YLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 333333344444555666677888875 5899999999888777888888999999999997 99998877766666554
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+.+....... ..+.....+...+.+++.+...+...+...|..|+ + ++++.++
T Consensus 283 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~ 335 (401)
T PRK11043 283 IAIWLASLLS--------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAAL 335 (401)
T ss_pred HHHHHHHHhc--------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHH
Confidence 4433222100 00334445556677888888888887777777764 5 8999999
Q ss_pred HHHHHhhhhHHHHHHHHHhccccchhHHH
Q 008106 192 YVFCLSCGALIAVTFVVWIEDNKGWQWGF 220 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~~~gw~~~f 220 (577)
++.....++.+++.+.+.+.+.......+
T Consensus 336 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 336 QNTLQLGLCFLASLLVSALISTPLLTTGS 364 (401)
T ss_pred HHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence 98888888888988888887754444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-07 Score=92.33 Aligned_cols=167 Identities=16% Similarity=0.072 Sum_probs=135.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+..|.+.+..-+.++.+|.++.|+|.++. +.|+|..++|++.+...+.+....+.+-++++|.-.+|+.......++.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34678888888899999999999999986 89999999999999999999999999999999875788888888888888
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
|.+.+.+.+. +. .+...+++|+|.|+.++....++.+-.++.+. -++..
T Consensus 287 G~~G~~~~P~------------------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LS 335 (395)
T COG2807 287 GLVGLLLAPG------------------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALS 335 (395)
T ss_pred HHHHHHHhhh------------------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHH
Confidence 8888877652 22 22235889999999999999999998876551 56666
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATIL 228 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~ 228 (577)
++.+-...+=++.||++.|++.|..| |+..+...+...+
T Consensus 336 gmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred HHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 66666667778889999999999875 8877765544433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=102.48 Aligned_cols=166 Identities=10% Similarity=0.078 Sum_probs=117.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.+..+++..++.+...+......+.|.+..++ +....+.+.+...+...++.++.++++||+ |+|+.+.++.++..
T Consensus 230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~ 307 (473)
T PRK10429 230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPV 307 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence 3567777777777777777665655544443334 455556666666678888899999999997 99999998888777
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCccc-chhhhchhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETT-QLGRKQRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~ 187 (577)
++.+........+ ..+.+.+++..++.+++.+...+...++++|..|.++ ...+...|.
T Consensus 308 ~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 308 LSCGVLLLMGLAA--------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred HHHHHHHHHhccC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 6665554321000 0134556666677889999988999999999988543 111112455
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
.+++..+...+|..+++.+.|++.+..||
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77888999999999999999998766665
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.3e-07 Score=95.09 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
+...++..++.....-....+...|+++.-|.+....+.+.+...+.-...-.+.+++-.|+ |.|+.+.++.+..++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44455555555655555667888998754447777777776666667777778889999996 99999999999888877
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
.+.+...+.+ .........+.+++|+..|....+...++.+..|++. |+++.++
T Consensus 288 ~l~a~~~~~~--------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 288 LLYAYFSDPW--------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHhcCCc--------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 7776652100 0012233444567999999999999999999999999 9999999
Q ss_pred HHHH-HhhhhHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHHHHhc
Q 008106 192 YVFC-LSCGALIAVTFVVWIEDNKGWQ------WGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 192 ~~~~-~~lG~~igp~~~~~l~~~~gw~------~~f~~~~~~~~~~~~~~~~~ 237 (577)
++.. ..+|..+|..++|++.+.+|-+ ..+.+.++..++..+++++.
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7764 5799999999999999987744 34445555544444444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=98.60 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=135.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.++...+.+.+.++..+.-.-......+.+-++-|++..++.+++........+..+++.++.||+ |||+.++++..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 345567777777777666555555556667778999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHH--HHhhcccccccchhhhcccCCcccchhhhch
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYI--VALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l--~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
.+..+++......... ....-....+++.++ ..++.| ..|..+-+.+|.+|++. |
T Consensus 346 ~~~~~~~~~~~~l~~~----------------~~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R 402 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNS----------------FGSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------R 402 (485)
T ss_pred HHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------h
Confidence 9888777654321100 000001112333333 233333 34778888999999998 9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccC
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (577)
..++++.+....+..++-......+.+..|- ..|++..+..++..+..+...|+.|++.
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 9999998887777777776666667676664 5666666666656665666666655443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=97.92 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.++.+.+..++....++.+..+++.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence 3456666666777777788888999999999999999999998889999999999999999997 999988888777776
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++.+... +..+.....+..++.+++.|...+...++++|..|+ + +++..
T Consensus 304 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~ 355 (366)
T TIGR00886 304 GAFLVVLGLV---------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVS 355 (366)
T ss_pred HHHHHHhcCC---------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHH
Confidence 6666554321 000233344444555556666666677788888873 5 89999
Q ss_pred HHHHHHHhhhh
Q 008106 190 NYYVFCLSCGA 200 (577)
Q Consensus 190 ~~~~~~~~lG~ 200 (577)
++.+...++|+
T Consensus 356 g~~~~~~~~g~ 366 (366)
T TIGR00886 356 GLVGAIGNLGG 366 (366)
T ss_pred HHHHHhccCCC
Confidence 99888777764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-07 Score=96.16 Aligned_cols=164 Identities=12% Similarity=0.032 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKF-MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
.++...+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++||.+.++.++..+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 355556666666666667778899998653 244545555566677788899999999999996 999999888888887
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
.+++..+.+ +. ......++.|+..+.++|+..+...+..+++. .....
T Consensus 312 ~~ll~~~~~-------------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~ 359 (410)
T TIGR00885 312 LCLGSIFAG-------------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAA 359 (410)
T ss_pred HHHHHHHcC-------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHH
Confidence 777776643 11 23455667888888999999999999998765 33232
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcccc------chhHHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNK------GWQWGFGISTATILL 229 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~------gw~~~f~~~~~~~~~ 229 (577)
...++. +|+.+.|.+.|++.|.. |.+..|.++.+..+.
T Consensus 360 -~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 360 -GLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred -HHHHHH-hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 223333 99999999999999954 478888887665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=96.23 Aligned_cols=179 Identities=12% Similarity=0.125 Sum_probs=138.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---CchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHF---SPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
.|.+|.+.+........|+..-...+.|.+..+.- ++...|.+.+.-.+.-.+.-.+..++-+|+ |.|+.++++..
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 45678777776666666666666688888765542 233346666666667778888899999996 99999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
+.++=..++++++ +.+.+.+.+.+.++-.+.......-++++.+|++. .
T Consensus 298 i~~iRi~~~~~~~-------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------s 346 (412)
T PF01306_consen 298 IMAIRIIGSGFAT-------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------S 346 (412)
T ss_dssp HHHHHHHHHHT---------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------H
T ss_pred HHHHHHHHHhhhc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------H
Confidence 9998888888876 67889999999999999999999999999999887 7
Q ss_pred hhhHHH-HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 186 SAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 186 ~~~~~~-~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
++...+ +.....+|..+.+.+.|++.|+.|++..|++.+.+++...++..+..+
T Consensus 347 At~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 347 ATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 777777 467888999999999999999999999998877776655554444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-07 Score=90.23 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--C-----------------CCchhhhhHHHHHHHHHHHHHhHHHHhh
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFM--H-----------------FSPSSSANIVTNFMGTAFLLALFGGFLA 90 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--g-----------------~s~~~~~~~~~~~~~~~~i~~~~~G~la 90 (577)
|.-+++-...|...+.||+.+-......+... | .+...-..=..+..+..+-+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 44566777788889999998765433332211 1 1111111112234455567889999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhh
Q 008106 91 DAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHG 170 (577)
Q Consensus 91 D~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ 170 (577)
||+ |||+++..+++++++.++++....+ .......++++|+....+. -+.+.+.
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~---------------------rn~~tvllf~arafisg~f----qvaYvYt 459 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT---------------------RNAYTVLLFTARAFISGAF----QVAYVYT 459 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC---------------------cchhHHHHHHHHHHHhchh----eEEEEec
Confidence 995 9999999999999998888765431 1113456777777654443 4567888
Q ss_pred cccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 171 AEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 171 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
.|.+|+.. |+.+.|.-.....+|+++.|.+. ...+.. -..+..+.++..+++.+...+
T Consensus 460 PEVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s-~sl~i~vy~~~~ilagIavcf 517 (528)
T KOG0253|consen 460 PEVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAELS-TSLPIFVYGALFILAGIAVCF 517 (528)
T ss_pred Ccccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccc-eeehHHHHHHHHHHHHHHhee
Confidence 99999998 99999999999999999999888 333322 233444444444444444333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-07 Score=96.34 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=122.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccch--------hHH-H
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT--------YRI-Y 100 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr--------r~~-l 100 (577)
+.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|++.+...+...+..+++|.++||. -+ ||. =
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999999996 43 121 1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCC-chHHHHHHHHHHHHhhcccccccchhhhcccCCcccc
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEG-GKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 179 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (577)
.++....++..+.+++.+. ++. .....+.++..+.|+.. +....-..|..|++
T Consensus 337 ~i~~~~~ai~l~~l~~~~~--------------------~~~~~a~~~l~~~~~~~g~~~----~Gf~~~~~~~apq~-- 390 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTSD--------------------EHRLLAVILLTIAIGLSGFNI----SGFYKNHQDIAPQH-- 390 (466)
T ss_pred hHHHHHHHHHHHeeeecCC--------------------CcchHHHHHHHHHHHHcccch----hhhHhhhhhccchH--
Confidence 2222223333333333321 000 01111111112222222 22233333445544
Q ss_pred hhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc---cchhHHHHHHHHHHHHHHHHHHhc
Q 008106 180 LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN---KGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
-+..+++.+...++.++++|.+.+.+.++ ..|+..|++.+++.+++.+.+.+.
T Consensus 391 -----a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 -----AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 48889999999999999999999999843 369999999998887777655443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.5e-07 Score=97.21 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.+++..++......... .+..|..++.--+++..+.+.....+...++.++.++++||+ |+|+.+.++.++..+
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRG-GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHh-hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 445555555555544443333 344454433322333334455556677778888999999996 999999988776665
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch-hhhchhhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL-GRKQRSAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~ 188 (577)
+.....+.+ ..+.+.+++..++.|++.+...+...++++|..+.++-+ .+...+..
T Consensus 307 ~~~~~~~~~-----------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~ 363 (444)
T PRK09669 307 LSALIFFIP-----------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV 363 (444)
T ss_pred HHHHHHHhC-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence 444333321 014556677778899999999999999999999854421 12224667
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
++.+.+...+|.++|+.++|++.+..||
T Consensus 364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 364 FSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888999999999999999998776666
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-06 Score=89.30 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008106 45 AYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLK 124 (577)
Q Consensus 45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~ 124 (577)
.........+.|+++.+|.++.+.+++.....++..++.++.+++.||+ ||+... +.....++.+.........
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~--- 295 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG--- 295 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc---
Confidence 3333344567788888999999999888888888888888899999986 743333 2222222222221111000
Q ss_pred CCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHH
Q 008106 125 PPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV 204 (577)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 204 (577)
..+.+.+..+.++.++|.+...+...+...|.+|+ + ++...++.+...++|..+++
T Consensus 296 -----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~ 351 (394)
T PRK11652 296 -----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAA 351 (394)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHH
Confidence 01345566777888999998889999999998874 4 78888999888999999999
Q ss_pred HHHHHhccccchhH
Q 008106 205 TFVVWIEDNKGWQW 218 (577)
Q Consensus 205 ~~~~~l~~~~gw~~ 218 (577)
.+.+++.+...+..
T Consensus 352 ~~~~~~~~~~~~~~ 365 (394)
T PRK11652 352 LLSAMLPQTGQFSL 365 (394)
T ss_pred HHHHHccCCchHHH
Confidence 99998876544443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-06 Score=88.48 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=89.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCch
Q 008106 416 ITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS 495 (577)
Q Consensus 416 ~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~ 495 (577)
.++.+.+..|+....+=.+.+.++ .++|.+++.-++.|+..+.+..+.-+|+...+|++
T Consensus 433 iGHv~v~~lgLa~~~~Rf~~~S~L---------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~ 491 (618)
T KOG3762|consen 433 IGHVNVMYLGLACNVGRFLYYSYL---------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPG 491 (618)
T ss_pred hcccceeeehhhHHHHHHHHHHHh---------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 444455666777666666666655 47788888889999999999999999999999999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 496 MRSLATSLSW-ASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 496 ~rg~~~g~~~-~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
+|.+++|+.. ....+|..+|+.+.+.+.+. -+-...|..+++.|++.++.+...-+..++
T Consensus 492 l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-----------------fg~~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 492 LRATAQGLLQGIFHGLGKGLGSLIGGFVVER-----------------FGARTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred chHHHHHHHHHHhcccCcchhhhhhhhhhee-----------------ehhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999988 56678999999998887732 122446777777777776665544444443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-05 Score=79.85 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHH
Q 008106 72 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAG 151 (577)
Q Consensus 72 ~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (577)
+.+......+..++++.+-|+. |.|..+.++...+..-.....+. +...++.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~--------------------------N~y~~yfs 108 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP--------------------------NSYYLYFS 108 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc--------------------------chHHHHHH
Confidence 5556677788899999999996 99999999988887766555443 56778889
Q ss_pred HHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHH
Q 008106 152 LYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFV 207 (577)
Q Consensus 152 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~ 207 (577)
-.+.|+|.+..+...-.++.|..+++. +++..++.......+.++|....
T Consensus 109 sallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 109 SALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999999999999999999888 88888887777777777775544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-06 Score=91.37 Aligned_cols=186 Identities=10% Similarity=-0.033 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchh----hhhHHHHHHHHHHHHHhHHH----HhhhcccchhHHH--H
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSS----SANIVTNFMGTAFLLALFGG----FLADAFFTTYRIY--V 101 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~i~~~~~G----~laD~~~Grr~~l--~ 101 (577)
+..+++..++....+....+.++.|.+++.+.+... .+++.+...+...+.+++.. ++.||-.+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 444555555666666666777888887766554322 55666666666666655544 4555411334444 7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh
Q 008106 102 ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 181 (577)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (577)
+|.++.+++...+++..... ++....+.+.+++..++.++|.....|...+++.|..|++.
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~----------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~--- 414 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFA----------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL--- 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhc----------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---
Confidence 78888888877776542110 01112378889999999999999999999999999999999
Q ss_pred hhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 182 RKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 182 ~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
|++.++++.....+|..+++.+.....+..||...|...++..++..+++++..+
T Consensus 415 ---~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 415 ---MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777778888887777666655555544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=6e-06 Score=72.69 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=94.9
Q ss_pred ChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHH
Q 008106 387 PVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 466 (577)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (577)
..++.++..++.+++.|+..|| +.+..+..+..++.+..... .+.+..
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ 54 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS---------------------SNITVL 54 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh---------------------ccHHHH
Confidence 3455666677777766555433 23555666666665554442 245556
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhH
Q 008106 467 ALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLE 546 (577)
Q Consensus 467 ~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (577)
....++.+++.....+....+..|..|++.|++.+++.++...+|..+++.+.+.+.+ ..++.
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~ 117 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-----------------FLGWR 117 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc-----------------ccchH
Confidence 6677889999999999999999999999999999999999999999999999888752 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008106 547 RFYWLMCILGGLNFLHFLFWA 567 (577)
Q Consensus 547 ~~f~~~~~l~~l~~v~~~~~~ 567 (577)
..|++.+++.++..+..+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 118 APFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 577777777777766655543
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.2e-06 Score=80.35 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=99.9
Q ss_pred HHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCC
Q 008106 55 LYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGI 134 (577)
Q Consensus 55 ~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (577)
.|+.+..|+...+.+.+..+......+...+.|-++||- |||+.-+ .+++...++.+....+
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKhSp------------- 122 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKHSP------------- 122 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhcCC-------------
Confidence 467788999999999988887777778888889999996 9999655 4566666666654322
Q ss_pred CccCCCCCchHHHHHHHHHHHHhhcccccccchh-hhcccCCcccchhhhchhhhHHH-HHHHHhhhhHHHHHHHHHhcc
Q 008106 135 ASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAP-HGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~lG~~igp~~~~~l~~ 212 (577)
++-.++++|.+-|+..+..+.+-.+ +++|..+++.-.++ -...-++- ..++..+-++++.+.+-.+.+
T Consensus 123 ---------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Feqq-Wls~TFskA~ffgNglvAiiaGlfgn~lvd 192 (454)
T KOG4332|consen 123 ---------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQ-WLSVTFSKAVFFGNGLVAIIAGLFGNLLVD 192 (454)
T ss_pred ---------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHh-hhhHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 4557899999999998877665544 34555543321000 01111111 112333444555555555555
Q ss_pred cc--chhHHHHHHHHHHHHHHHHHHhcCcccccc
Q 008106 213 NK--GWQWGFGISTATILLSIPIFLLGSPFYRNK 244 (577)
Q Consensus 213 ~~--gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 244 (577)
.. |--.+|-..+.+..++..+.+-.+.+..++
T Consensus 193 ~~slGPVAPFdAAacfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 193 TFSLGPVAPFDAAACFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HhccCCCCchHHHHHHHHHHHHHHHhhhhhccCC
Confidence 54 455677766666666655554444433333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-05 Score=83.31 Aligned_cols=174 Identities=13% Similarity=0.176 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
...+..-++..+++..--..+=+|--+.+|++..++..++.....+..++-...|++..|..++++...++..+..++..
T Consensus 211 ~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 211 RRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred hHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 33444445555565555556677888899999999999999999999999999999988666999999999999888888
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
+..++.... +.+.+..+.++.|+|.|......-+.+.|..++++ -|..++.+
T Consensus 291 lii~a~~~~----------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~W 342 (403)
T PF03209_consen 291 LIILAGPLG----------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAW 342 (403)
T ss_pred HHHHHHhcc----------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHH
Confidence 877765322 57789999999999999999999999999998887 78999999
Q ss_pred HHHHhhhhHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIED----------NKGWQWGFGISTATILLSIPIF 234 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~ 234 (577)
.....+...+|..++|.+.| ..+|..+|.+-++..++++.+.
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877543 2357788888777766666544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=78.27 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008106 45 AYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLK 124 (577)
Q Consensus 45 ~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~ 124 (577)
+.|.+ +.....+++++|+|++|.+.+..+-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..++.+..+..
T Consensus 17 t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~--- 90 (250)
T PF06813_consen 17 TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR--- 90 (250)
T ss_pred cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc---
Confidence 34434 34456788999999999999999999998875 7789999997 999999999999999999888765322
Q ss_pred CCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHH
Q 008106 125 PPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAV 204 (577)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp 204 (577)
....+.+.+.+..++.+.|.+...........+.||+ + ||...++.-....+++.+-.
T Consensus 91 ---------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t 148 (250)
T PF06813_consen 91 ---------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFT 148 (250)
T ss_pred ---------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHH
Confidence 1112566666666666666555544444555688885 5 89999987666667666655
Q ss_pred HHHHHhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 205 TFVVWIEDNKGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 205 ~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
.+...+.+.-.-...+++.....++.++..++.+
T Consensus 149 ~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 149 QIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 5554444432223333344444444444444443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.2e-06 Score=87.17 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=125.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.+..+++..++...++....+....|.+-.+|-++............+..++.++...+++|+ |+|+++.++.++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~ 313 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLA 313 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHH
Confidence 34556666666666666555555556666667888888888888888888888899999999996 99999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhh-chhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRK-QRSA 187 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~ 187 (577)
++.+++.+.+. .+.+.+++..++.++|.+...+..+++++|..+..|-.+-+ .-|-
T Consensus 314 i~~~~~~f~~~-----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi 370 (467)
T COG2211 314 VGYLLLYFTPA-----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI 370 (467)
T ss_pred HHHHHHHhhcC-----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence 99999988651 26778888889999999999999999999999876522211 1245
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
.++.+.+..=+|.+++..+.|++....||
T Consensus 371 ~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 371 VYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55667777788888888777777555544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=78.44 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=111.2
Q ss_pred HHHHHHhhhhcCCCc--hhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 008106 51 SNLVLYLSKFMHFSP--SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128 (577)
Q Consensus 51 ~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (577)
...+.+. .+++.+. .+.++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+
T Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3444444 4555555 5788899999999999999999999997 9999888888776666566655441
Q ss_pred ccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCc-ccchhhhchhhhHHHHHH-HHhhhhHHHHHH
Q 008106 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDE-TTQLGRKQRSAFFNYYVF-CLSCGALIAVTF 206 (577)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~lG~~igp~~ 206 (577)
.....+.+.|++.|++.+...+...+++.|.+|+ .+ |+...+.... ...+|..++|.+
T Consensus 92 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T COG0477 92 --------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLL 151 (338)
T ss_pred --------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467889999999999999999999999999997 44 8888888777 578888888877
Q ss_pred HHHhccc--cchhHHHHHHHHHH
Q 008106 207 VVWIEDN--KGWQWGFGISTATI 227 (577)
Q Consensus 207 ~~~l~~~--~gw~~~f~~~~~~~ 227 (577)
.+.+... .+|+..|.+.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 152 AGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 7666543 57888665554443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=89.19 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc--hhHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT--TYRIYVISAAIEFM 109 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G--rr~~l~~~~~~~~~ 109 (577)
++...+.-...+...-..-+.+++++.|.+..+..+.|....-..+...++..+.|.++||+ + |......++++..+
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~ 350 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGV 350 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 55566666666666666778899999999996666999988888999999999999999997 9 66666666666665
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
.+....+.+ +...+++-+...+++.+.+.+...+..+.+.+.++..+-...|...
T Consensus 351 ~~~~iP~~~-------------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVy 405 (464)
T KOG3764|consen 351 SSGPIPFAT-------------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVY 405 (464)
T ss_pred HhchhHhhh-------------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHH
Confidence 555555554 5667777788888888888888888888888776532111367888
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHh
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLL 236 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 236 (577)
++...+..+|.++||.++|.+.+..|++|.-.+.+...++-..++.+
T Consensus 406 aIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 406 AIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998888777766555444444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=83.13 Aligned_cols=170 Identities=15% Similarity=0.070 Sum_probs=111.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++...+..++....++......|.++++.+|.++.+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 5577777777778888888888889999999999999999988777777777777777765443 444544444344444
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
+..++....... .......+++.++.++|.+...|......- .+.+.+ +++..
T Consensus 297 g~~l~~~~~~~~--------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~ 349 (413)
T PRK15403 297 GLALLIVGNLLW--------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVS 349 (413)
T ss_pred HHHHHHHHHHHc--------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHH
Confidence 444433221000 002333566777888888887777764332 322221 67777
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATIL 228 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~ 228 (577)
+.++.....+..+++...+++.++ +-.+.|.+..+...
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 888888888888888888988665 44566665554433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-05 Score=81.10 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.-.+..|+..-.--.+-++++.|+.+..|++..++...++.+..+..++..++-++-.|+ -..|.+.+..++..+
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 4466666777776666677778999999988999999999999999999999999999998886 999998888766666
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
-++..++.. + ..-+...++.|+..+..+|++.+...+..|++. +.+..
T Consensus 315 l~~~~~l~~-------------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~- 362 (422)
T COG0738 315 LLLAVALIG-------------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG- 362 (422)
T ss_pred HHHHHHHhc-------------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce-
Confidence 666666654 2 234445577899999999999999999999544 12222
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFG 221 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~ 221 (577)
.-...-+|+++-|.+.|++.|..|-+..+.
T Consensus 363 --~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 363 --LLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred --eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 223445899999999999999998777766
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.9e-07 Score=92.65 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=116.8
Q ss_pred CCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 008106 380 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 459 (577)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (577)
.+.++....+..+++.|+.+++.|++-|+.. +..|..+-.++.+..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----------~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----------IAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----------EeeHHHHHHHHHHHHHHHH-------------------
Confidence 4567777778888899999999877766542 6678888888887777642
Q ss_pred ceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCC
Q 008106 460 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 539 (577)
Q Consensus 460 ~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 539 (577)
+.|.+++.=.+.|+||....|...+++.|.+|...|++..+++++....|..+|......+...+
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------------- 184 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------------- 184 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-------------
Confidence 55666777799999999999999999999999999999999999999999999888766654321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 540 LNHYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 540 ~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
.+|++.|+..++++++..++..++.+.-+
T Consensus 185 ---~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 185 ---FWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred ---cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 33778899999999999888777776543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=83.27 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.+..++...++..+...........|.+..+|. +...+.+.+.+.++..++.+++++++||+ |+|+.+..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3344444444444444443333333333333443 33445666777888888999999999996 999988766555544
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch-hhh
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR-SAF 188 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~ 188 (577)
..++..+.+. .+...+++..++.|++.+...+...++++|..+.++-+..++| +..
T Consensus 306 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 306 ISLAMFFVPM-----------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHHHHhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 4443333221 0222334445566777777777778889988885431111112 333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccch
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGW 216 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw 216 (577)
++...+...+|.++|+.+.|++.+..||
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666788899999999888887654454
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.6e-05 Score=82.38 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hcCCCc------hhhhhHHHHHHHHHHHHHhHH----HHhhhcccchhHHHHHHHHH
Q 008106 39 EVLENLAYLANASNLVLYLSK--FMHFSP------SSSANIVTNFMGTAFLLALFG----GFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~--~lg~s~------~~~~~~~~~~~~~~~i~~~~~----G~laD~~~Grr~~l~~~~~~ 106 (577)
.++....+|.+...++.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.+|+++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 335556666666666666543 111111 124445554454444555555 6667775 778899999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++.+.++...+... +....+.+.+....+++++|.+...|...+++.+..|++. |+
T Consensus 360 ~~l~f~~l~~~~~~~~----------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg 417 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN----------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MG 417 (500)
T ss_pred HHHHHHHHHHHHHhcC----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HH
Confidence 9999988877653210 1112356678889999999999999999999999999999 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIED----------NKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
+.+|.+.+...+|..++..+.+.... ..++...|...++..++..++++...+
T Consensus 418 ~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~ 480 (500)
T PRK09584 418 FIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888887776653321 123667777666554433333333333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.6e-06 Score=89.00 Aligned_cols=137 Identities=11% Similarity=-0.038 Sum_probs=107.6
Q ss_pred hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCc
Q 008106 57 LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIAS 136 (577)
Q Consensus 57 l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (577)
.++.+|+++.+.|.+.....++..++....+++.+|+ +.|+++.++.++..++............+.
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~------------ 345 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA------------ 345 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc------------
Confidence 3468999999999999999999999999999999996 999999999999888776643211000000
Q ss_pred cCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccc
Q 008106 137 CREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG 215 (577)
Q Consensus 137 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g 215 (577)
..-...+.+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..|
T Consensus 346 ---~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 346 ---FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ---cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000022234445567788888888888999999999998 9999999999999999999999999988777
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-05 Score=83.50 Aligned_cols=149 Identities=7% Similarity=-0.016 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCch----hhhhHHHHHHHHHHHHHhHHHHhhhcccchhHH-------HHHHHHHH
Q 008106 39 EVLENLAYLANASNLVLYLSKFMHFSPS----SSANIVTNFMGTAFLLALFGGFLADAFFTTYRI-------YVISAAIE 107 (577)
Q Consensus 39 ~~~~~~~~~~~~~~l~~yl~~~lg~s~~----~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~-------l~~~~~~~ 107 (577)
..+....+......++.|.++..+.+.. ...++.+...+...+..++.|++.||. |||+. +.+|+++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 4445555555556777887753333211 223444444455667777889999996 99973 77888887
Q ss_pred HHHHHHHHHHhh-ccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 108 FMGLLLLTVQAH-TRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 108 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
+++.+.++.... .. +.....+.+.++...++.|+|.+...+...+++.+..|++. ++
T Consensus 357 ~~~~~~~~~~~~~~~----------------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g 414 (489)
T PRK10207 357 SLGFLTAAAAGMWFA----------------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MG 414 (489)
T ss_pred HHHHHHHHHHHHhhc----------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HH
Confidence 777655432210 00 00111256667778888999999999999999999999998 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHh
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l 210 (577)
..++.+++..++|..+|..+....
T Consensus 415 ~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 415 FILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998777655
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.002 Score=67.64 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=110.6
Q ss_pred HHHHHHhhhh-cCCCchhhhh-HHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc
Q 008106 51 SNLVLYLSKF-MHFSPSSSAN-IVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTC 128 (577)
Q Consensus 51 ~~l~~yl~~~-lg~s~~~~~~-~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 128 (577)
+++..|+.+. .|++..|..- +.=...-......++...+.|.. |.|++++++.+...+...++.+.+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 3578899886 9999998853 33344444556777889999996 999999999888888777777765
Q ss_pred ccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHH
Q 008106 129 VLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV 208 (577)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~ 208 (577)
+...+.+..+..|++.+. ..+..+++=-..|+++ -.+..++...+.-+|-.++.+++=
T Consensus 93 ---------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 93 ---------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred ---------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888776 4556677766666665 666677766666677666665554
Q ss_pred Hhcc--ccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 209 WIED--NKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 209 ~l~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
.+.. ..++....+++.....+++++.++.++
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4433 345777777777777777766555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=82.92 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=108.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhc----ccchhHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADA----FFTTYRIYVISAA 105 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~----~~Grr~~l~~~~~ 105 (577)
..+|..+++.++.....|++..++|.|+.+..|+|..+++.+...+.++..++.++.|+++|| + .+|..+.....
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~ 351 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC 351 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 458999999999999999999999999998678999999999999999999999999999999 5 77777777766
Q ss_pred HHHHHH-HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 106 IEFMGL-LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 106 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++.+.. ..+...+ .......+.+....+.+...++...-..+....+. +
T Consensus 352 ~~~~~g~~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k 401 (495)
T KOG2533|consen 352 LYAIIGAISLLAAA-------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----K 401 (495)
T ss_pred HHHHHHHHHHHhhc-------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----H
Confidence 655433 4443322 11112222222233333333444444455544433 2
Q ss_pred hhhhHHHHHHHHhhhhHHH-HHHHHHhccccchhHHHHHHH
Q 008106 185 RSAFFNYYVFCLSCGALIA-VTFVVWIEDNKGWQWGFGIST 224 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~ig-p~~~~~l~~~~gw~~~f~~~~ 224 (577)
|-...+.+..+.+.+++++ ++.-+.....++|...|....
T Consensus 402 ~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 402 ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 4444444444444444444 444555666678988885433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.8e-05 Score=60.15 Aligned_cols=71 Identities=24% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+-...++...+.-.+.++++.|++ +.|+++.+.|.+.++..+...+++++.|+++||+ ||++.+.....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 334455566666667789999997 6999999999999999999999999999999997 9888877765543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.5e-08 Score=103.93 Aligned_cols=188 Identities=15% Similarity=0.025 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||+.++++..+.+++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344555555555555544444545555667777766 2222233455566777888999996 9999999998888877
Q ss_pred HHHHH-HHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 111 LLLLT-VQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 111 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
.+.++ .....+ +.++..+...+............+..+....+..|.+|++. |+++.
T Consensus 330 ~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~ 387 (451)
T PF00083_consen 330 SLILGIIFFLGV----------------SSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGI 387 (451)
T ss_pred cccccccccccc----------------ccccccccccceeeeeccccccccccccccccccccccccc------ccccc
Confidence 77664 111000 00000111111111111111222334666688899999999 99999
Q ss_pred HHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008106 190 NYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRN 243 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 243 (577)
++.+....+++++++.+...+.+..+-...|.+.++..++..+..++..|+.++
T Consensus 388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 999888899999999888888777663345555554444455444444454443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-05 Score=83.43 Aligned_cols=181 Identities=15% Similarity=0.066 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhh--------HHHHHHHHHHH-HHhHHHHhhhcccchhHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSAN--------IVTNFMGTAFL-LALFGGFLADAFFTTYRIY 100 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~--------~~~~~~~~~~i-~~~~~G~laD~~~Grr~~l 100 (577)
+.+...+...|+.-+++|+...+...-+ +..|+.+.+... .......++.+ +..++.++.|++ |||++.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 5567777888888888888876655544 456665554333 22222233333 666778889996 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (577)
+.+++++++..+.++...+.. +. +...++..-+.+-+++-+...+.-.+-+|.||++.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~~-----------------~~---~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv-- 439 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQL-----------------EN---TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV-- 439 (538)
T ss_pred HhhHHHHHHHHHHHcCCcccc-----------------cc---cCceeehHHHHHHHHhcCCCceeEEeehhhchHHH--
Confidence 999999999888887765311 11 11112222223344555555667777799999999
Q ss_pred hhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-----NKGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 181 ~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~-----~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
|+.+.++.-...-+|+++|.....++.+ ..|.+..|++.....+++.+..++..
T Consensus 440 ----R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 440 ----RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred ----hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 9999999999999999999999999988 77899999999888887776655543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.027 Score=60.84 Aligned_cols=159 Identities=6% Similarity=-0.038 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CchhhhhHHHHHHHHHHHH-HhHHHHhhhcccchhHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHF-----SPSSSANIVTNFMGTAFLL-ALFGGFLADAFFTTYRIYVIS 103 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~-----s~~~~~~~~~~~~~~~~i~-~~~~G~laD~~~Grr~~l~~~ 103 (577)
++++.+.+..|+--+.|+.+. -+.|.+.. +.+...++.+...+.+.+. .++-+++++|+ +|++.+.+.
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~ 80 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV 80 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence 456777777777777766554 34566655 3345667776665555444 77889999996 999998887
Q ss_pred HHHHHHHHHHHHHH--hhccCCCCCCcccccCCCccCC------C---------CCchHHHHHHHHHHHHhhccccc-cc
Q 008106 104 AAIEFMGLLLLTVQ--AHTRSLKPPTCVLEDGIASCRE------D---------EGGKAVMLFAGLYIVALGVGGIK-GS 165 (577)
Q Consensus 104 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~------~---------~~~~~~~l~~~~~l~g~g~g~~~-~~ 165 (577)
...+.....+.++. +..+.+. | +..++. . .......+++.- .+-..... -.
T Consensus 81 ~~~F~~~f~lF~~vl~p~~~~~~-p-------~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~---elw~~~vvS~l 149 (472)
T TIGR00769 81 ISPFLGFFALFAFVIYPLSDLLH-P-------TALADKLLSLLPPGFMGFIAILRIWSFALFYVMA---ELWGSVVLSLL 149 (472)
T ss_pred HHHHHHHHHHHHHHHhcchhhcC-C-------cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHH
Confidence 77766665555543 1100000 0 001110 0 011111222222 12222222 26
Q ss_pred chhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc
Q 008106 166 LAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~ 211 (577)
-++++.|.++.++ -.+.+++++.+.|+|..+++.+..++.
T Consensus 150 FW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 150 FWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999998 899999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=74.30 Aligned_cols=207 Identities=10% Similarity=-0.066 Sum_probs=138.6
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCch------hh---h-hHHHHHHHHHHHHHhHHHHhhhcc
Q 008106 25 RHGGMLAACFVLAVEVLENLAYLANASNLVLYLSK-FMHFSPS------SS---A-NIVTNFMGTAFLLALFGGFLADAF 93 (577)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~lg~s~~------~~---~-~~~~~~~~~~~i~~~~~G~laD~~ 93 (577)
.+..|+..+.+++++++..++++.+..+...|+.+ .++-++. +. | +....+.+...+.+++.-++.+|+
T Consensus 253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34458999999999999999999998888888775 3443321 11 2 233334555566677778889996
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcc
Q 008106 94 FTT-YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAE 172 (577)
Q Consensus 94 ~Gr-r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~ 172 (577)
|+ |+...++.++.+++.....+..+...-.. .+++....-++.....+..++...+.|+..+.....-.+++++
T Consensus 333 -g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~ 407 (477)
T TIGR01301 333 -GAGKRLWGIVNIILAICLAATVLVTYVAKNSR----YYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI 407 (477)
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc----cccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 95 67778888888888877765542110000 0000000000111113556666678899999999999999999
Q ss_pred cCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHhcCcc
Q 008106 173 QYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG--WQWGFGISTATILLSIPIFLLGSPF 240 (577)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~ 240 (577)
..+++. .+.|..+|+.+..+-+.-.+..+..|.+.+..| -.+.+.+.++..+++.+..++..|+
T Consensus 408 ~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 408 RSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 999543 116999999999999999988887777655444 4567778888888777776666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=78.19 Aligned_cols=135 Identities=11% Similarity=0.061 Sum_probs=90.5
Q ss_pred hhhhHHHhhhhhhhhhhc-ccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHH
Q 008106 388 VIFILILAPVYNHVIIPF-ARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWV 466 (577)
Q Consensus 388 ~~~~~~~~~l~~~~~~~~-~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (577)
.....+..++.+++.||+ .|| +.+..|.++..++.++++... .+...+
T Consensus 55 ~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~--------------------~~~~~~ 103 (493)
T PRK15462 55 CSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE--------------------IHPSFL 103 (493)
T ss_pred HHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh--------------------cchhHH
Confidence 344455666777777776 433 336778888777766554311 111223
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcch
Q 008106 467 ALQYLFLGSADLFTLAGMMEFFFTDAPLS--MRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYH 544 (577)
Q Consensus 467 ~~~~~l~g~~~~~~~p~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (577)
.....+..++.++..|...+++.+.+|++ .|+++.++..+..++|..++|.+.+.+.+ ..+
T Consensus 104 ~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-----------------~~G 166 (493)
T PRK15462 104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-----------------EYS 166 (493)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-----------------hhC
Confidence 34444555666677787789999999975 79999999999999999999999988762 134
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 545 LERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 545 ~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
|+..|.+.++..+++++.++...+++
T Consensus 167 w~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 167 WAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 56677777666666666655444343
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.042 Score=58.70 Aligned_cols=188 Identities=12% Similarity=-0.076 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMG 110 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~ 110 (577)
..+.+....++.+..-=+.-...++|+.+-+.-+.--++..-..-.+...+..+..|...||. -|.+++..+.+.--++
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 456677777777766666666677888766543433333333334555667777889999997 9999998887753332
Q ss_pred HHH----HHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHH-HHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 111 LLL----LTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLY-IVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 111 ~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
... ....-..+. .++.+......+++... +.++..=+..+...+.=-|+...=..+....+
T Consensus 82 v~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS--------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 222 211111000 00000111222222222 22222222223333444555432111112225
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 233 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~ 233 (577)
.+..+...=.=.+.-+++|++.|.+....|......+.++..++++..
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 555555555556788899999999988888887777666666666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.012 Score=61.80 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=51.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008106 462 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 522 (577)
Q Consensus 462 ~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~ 522 (577)
+.|.+++..+..|+-.+......+..+.+..|++.|..++|.....-++|-.+++.+.-.+
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566666778888888888889899999999999999999999999998888888775444
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00067 Score=74.74 Aligned_cols=195 Identities=15% Similarity=0.037 Sum_probs=107.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.+|.....+....+..++-+....+....+-+..|.+... .+......+...++..++.++.||+ |||+.++.+.+.+
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m 369 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGM 369 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHH
Confidence 4455565666666666555444444334445677776554 4444555666777888889999997 9999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.++++........ +.. .........+....+.......+..+..+.+..|.+|.+. |+.
T Consensus 370 ~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~ 431 (513)
T KOG0254|consen 370 SICLVILAVVGVFALY-----------YPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK 431 (513)
T ss_pred HHHHHHHHHHHHHhcc-----------CCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence 9999888765421110 000 0001112222222222333333344666678899999998 888
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH-HHHhcCcccc
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP-IFLLGSPFYR 242 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~-~~~~~~~~~~ 242 (577)
+.++......+...+-....-.+.+..++...|........+... .+++..|+.+
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 888854444343333322222333333333445444444333333 3444444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=77.65 Aligned_cols=171 Identities=11% Similarity=0.024 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q 008106 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLL 114 (577)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~ 114 (577)
.+++.++..+..-.+..++=-++ |+++-.+.--|........+-.+.-++.+++-.|+ |+-+++.+++....+=.+..
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY 453 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence 33444444444444555554444 56665555556555555666677888999999996 99999999988888877777
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHH-
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYV- 193 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 193 (577)
.... +.|+.+..-+++|+..+.++.++.+++.+..|++. |.++.++..
T Consensus 454 S~L~-------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g 502 (618)
T KOG3762|consen 454 SYLQ-------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQG 502 (618)
T ss_pred HHhc-------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHH
Confidence 7765 77888889999999999999999999999999998 888888744
Q ss_pred HHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 194 FCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 194 ~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
..-.+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+....
T Consensus 503 ~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 503 IFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788889999999999999988888888777666665554433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00091 Score=73.84 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=100.5
Q ss_pred CCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 008106 380 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 459 (577)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (577)
..++...+.+...+..++.+++.|.+.||.. +..|.++..+|.++.+..
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA-------------------- 128 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATA-------------------- 128 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcC--------------------
Confidence 3466677788888888999999999988853 777888888888877753
Q ss_pred ceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCC
Q 008106 460 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSN 539 (577)
Q Consensus 460 ~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 539 (577)
.+....+...++.|+|.+.... ....+.|..|.+.|+.+.++.....-.....++.+...+.
T Consensus 129 -~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~---------------- 190 (599)
T PF06609_consen 129 -QNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA---------------- 190 (599)
T ss_pred -CcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc----------------
Confidence 2455667778888888666654 3556899999999998887766544444444555544332
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 540 LNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 540 ~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
.+.+|+|.|++.+++..++++...++.+..
T Consensus 191 -~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 191 -AHSGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred -cCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 125678888888888888877666665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=70.75 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHH
Q 008106 421 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLA 500 (577)
Q Consensus 421 ~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~ 500 (577)
.+..+.+...+..++.++. .+...+.+.-++.|++|+... ..+.++++.+|++.|+++
T Consensus 94 vL~l~~l~Wsl~t~L~~fa---------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ra 151 (511)
T TIGR00806 94 VLVLQALSFVCVWLLLLLG---------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRA 151 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHH
Confidence 3566666666666666653 256778888899999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008106 501 TSLSWASLAMGYYFSTVLVSIVN 523 (577)
Q Consensus 501 ~g~~~~~~~lg~~~~~~l~~~~~ 523 (577)
+|+++....+|.++++.+.+.+.
T Consensus 152 tsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 152 AAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999844
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=79.10 Aligned_cols=173 Identities=14% Similarity=0.013 Sum_probs=110.2
Q ss_pred CCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh-----hhc--
Q 008106 380 PASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKR--KRVA-----VNS-- 450 (577)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~--~~~~-----~~~-- 450 (577)
.+.+.+...++..+..++++++.++..|| +.+.+|.++.+++.++.++.+-.. +..+ ..+
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~-----------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP-----------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCcc-----------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 45566667777777777777776655443 236778888888888877643110 0000 000
Q ss_pred ----CCC--C-------------CCCCc--ceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHH
Q 008106 451 ----GLV--N-------------SSEPL--PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLA 509 (577)
Q Consensus 451 ----~~~--~-------------~~~~~--~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~ 509 (577)
..- + +.+.. ...+..+++.-++.|+|++...+...+++.|.+|++.|+.+.|+.+....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 0 00000 11345566788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCcc---C-CCCC--c----chhHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 510 MGYYFSTVLVSIVNNITSTYRHTPWLF---G-SNLN--H----YHLERFYWLMCILGGLNFLHFLFWAA 568 (577)
Q Consensus 510 lg~~~~~~l~~~~~~~~~~~~~~~~~~---~-~~~~--~----~~~~~~f~~~~~l~~l~~v~~~~~~~ 568 (577)
+|..+|+.+.+.+.+... +|-. + .+++ + +.|...|++.+++.++..+.++++-+
T Consensus 219 iG~~lG~llgg~l~~~~~-----d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQIYV-----DTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred hhhHHHHHHHHHHHhccc-----ccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999988875321 1100 0 0011 1 23455577777777776665544433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=71.83 Aligned_cols=117 Identities=6% Similarity=-0.001 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHH
Q 008106 420 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 499 (577)
Q Consensus 420 ~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~ 499 (577)
+.+.+|.++..++.++.++.... ....+.+.+.+..++.|++++...+.......+.+| +.||.
T Consensus 92 ~vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 92 PIFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 44778888888888877763100 001256667777889999999998888888888887 67999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008106 500 ATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARY 570 (577)
Q Consensus 500 ~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~ 570 (577)
++|+......+|.++.+.+...+.. .++..+|++++++.++..++.+.+.+..
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~------------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFS------------------DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 9999999999999865555444431 1244578888888888877777766544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0019 Score=66.29 Aligned_cols=152 Identities=12% Similarity=0.106 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccc-hhHHHHHHHHHHH
Q 008106 31 AACFVLAVEVLENLAYLANASNLVLYL-SKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFT-TYRIYVISAAIEF 108 (577)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~G-rr~~l~~~~~~~~ 108 (577)
..+..+...-+.+.-.|....+...++ .+.+|+++.|.|-+.....+.+.+.+..-+...|+..| -+..+..++.++.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 344444444444444444444545555 57899999999999888888888888888888898722 5666666766666
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
...++...+. ....++.+..+-.+..+...++...++....|+++ ||..
T Consensus 341 P~~llls~~~-------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~ 389 (451)
T KOG2615|consen 341 PAFLLLSLAR-------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTL 389 (451)
T ss_pred HHHHHHhccc-------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHH
Confidence 6777776655 34568888888888888888999999999999998 9999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccc
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDN 213 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~ 213 (577)
.|+......++=++||.+.|.+..+
T Consensus 390 ~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 390 NGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHHHHhhhhhhheeEEE
Confidence 9999999999999999999887653
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00032 Score=73.35 Aligned_cols=162 Identities=13% Similarity=0.175 Sum_probs=121.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcc---cchhHHHHHHHH-
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF---FTTYRIYVISAA- 105 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~---~Grr~~l~~~~~- 105 (577)
+.++.+..+.+...+++-.=.+++++|++ .+|.+-+-.+.+-...-+...+.+++.|..+||. +||||-++....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 66777777788888887777778888885 9999988888888888888899999999999986 688877665544
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCC----CCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE----DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 181 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (577)
..+++.++..++++..... ++. ........++++.-+.=+.+-.....+-++++|.....+
T Consensus 111 ~i~~~l~Lig~aaDig~~l------------gd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~--- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLL------------GDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA--- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHh------------cCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence 4566777777766433221 221 222455667777777778887888889999999987665
Q ss_pred hhchhhhHHHHHHHHhhhhHHHHHHHHH
Q 008106 182 RKQRSAFFNYYVFCLSCGALIAVTFVVW 209 (577)
Q Consensus 182 ~~~r~~~~~~~~~~~~lG~~igp~~~~~ 209 (577)
+ +.++.+++.....+|..+|..++++
T Consensus 176 ~--~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 176 K--KTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred h--hhccchhHHHHHHhcceeeeecccc
Confidence 1 2228888888999999999877764
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.007 Score=55.20 Aligned_cols=107 Identities=7% Similarity=0.063 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHH
Q 008106 70 NIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLF 149 (577)
Q Consensus 70 ~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (577)
.-.+.......+..++...+.+++ |.|+.+++|.+.+.+-....... +.+.++
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~~--------------------------~~~~l~ 93 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFYP--------------------------NSYTLY 93 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhh--------------------------hHHHHH
Confidence 344455666677778888899996 99999999988877544443222 456788
Q ss_pred HHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHH
Q 008106 150 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW 209 (577)
Q Consensus 150 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~ 209 (577)
.+-.+.|++.+..+.....++.+..++++ |++..+++....+.+.++|..+.-.
T Consensus 94 ~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 94 PASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988887 8888888777777777777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.2 Score=51.76 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=88.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhh-----cccchhHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLAD-----AFFTTYRIY 100 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD-----~~~Grr~~l 100 (577)
++..+++.++++......+- ++....+|..++ .-|.|-++.+....++. =+-.-++...+.| |+ ||||.-
T Consensus 27 ~~d~~~illLl~LYllQGiP-~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-GrrksW 101 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIP-LGLIGAIPLLLQ-AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKSW 101 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCc-hhHhhhhHHHhc-CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccce
Confidence 34456678888877777766 456666666664 67777776665443321 1223455566667 85 999975
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (577)
++- .-+.+|.++..++....... ..+. ...+...+-...++.-+..+..-.+.-...-.+..+++
T Consensus 102 vvp-~q~llG~~mllLs~~v~~~~-----------g~ng-~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~-- 166 (510)
T KOG3574|consen 102 VVP-CQYLLGLFMLLLSYLVDRGL-----------GGNG-GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN-- 166 (510)
T ss_pred eee-hHHHHHHHHHHHhhCCCccc-----------ccCC-CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence 432 12344555555543211110 1111 11122333333345555555555555555555555555
Q ss_pred hhhchhhhHHHHHHHHhhhhHHHHHHH
Q 008106 181 GRKQRSAFFNYYVFCLSCGALIAVTFV 207 (577)
Q Consensus 181 ~~~~r~~~~~~~~~~~~lG~~igp~~~ 207 (577)
.+.+......+.+.|.+++..+.
T Consensus 167 ----lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 167 ----LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred ----cCchhHHHHHHHhhhHHhhccee
Confidence 78888888888899998886553
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=69.99 Aligned_cols=200 Identities=9% Similarity=0.029 Sum_probs=130.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHH--HHhHHHHhhhcc--cchhHHHHH
Q 008106 27 GGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFL--LALFGGFLADAF--FTTYRIYVI 102 (577)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i--~~~~~G~laD~~--~Grr~~l~~ 102 (577)
..++..+.+.++.+..++.+..+-...+......++++.+++-...+.......+ ..+...+.--+. +-+|+.+..
T Consensus 259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~ 338 (488)
T KOG2325|consen 259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILL 338 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeee
Confidence 3467778888888888888888788788888889999998886665554333222 112222222221 134555555
Q ss_pred HHHHHHHHHHHHHHHh---hccCCCCC---CcccccCCCccCCCCCchHHHHHHHHH-HHHhhcccccccchhhhcccCC
Q 008106 103 SAAIEFMGLLLLTVQA---HTRSLKPP---TCVLEDGIASCREDEGGKAVMLFAGLY-IVALGVGGIKGSLAPHGAEQYD 175 (577)
Q Consensus 103 ~~~~~~~~~~l~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~g~g~g~~~~~~~~~~~~~~~ 175 (577)
+..+......+....- +.|-...+ ...+++.|.||++....+...+++... +.|.+.-.+.....++-+|...
T Consensus 339 g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLg 418 (488)
T KOG2325|consen 339 GFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILG 418 (488)
T ss_pred hHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhC
Confidence 5444333333222111 00100001 113456667898888778777777755 4677777777778888899998
Q ss_pred cccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 176 ETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
+.+ .+...+.+......+-.+||++...+....|.++...+..+..+....
T Consensus 419 p~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 419 PRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred Ccc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 888 788888888899999999999999988888988777766665544443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=67.12 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=100.2
Q ss_pred CCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccee
Q 008106 383 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPIT 462 (577)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (577)
.+++..++..++..+.+.+.|+++||. .+..++.+..++.+..++. -+
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a---------------------~~ 170 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA---------------------PN 170 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh---------------------Cc
Confidence 445556777777778888888866653 2555666666666555553 36
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCc
Q 008106 463 FLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNH 542 (577)
Q Consensus 463 ~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 542 (577)
++...+.-++.|++........+.+..|..+++.|+.++.+ ......+..+++...+++.
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~------------------- 230 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT------------------- 230 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH-------------------
Confidence 67777788999999999999999999999999999999999 8888888888888888776
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 008106 543 YHLERFYWLMCILGGLNFLH 562 (577)
Q Consensus 543 ~~~~~~f~~~~~l~~l~~v~ 562 (577)
.+|++.+++..+.+++.++.
T Consensus 231 ~~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 231 RDWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35778888888888877666
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0093 Score=62.64 Aligned_cols=186 Identities=15% Similarity=0.034 Sum_probs=114.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccch-hHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTT-YRIYVISAAIE 107 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr-r~~l~~~~~~~ 107 (577)
.+.+.++.++.-.....+|++...+..-+ ..-|.+...+|.+.....+.+.++..++|.++||. .. |++.++.....
T Consensus 265 n~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~ 342 (480)
T KOG2563|consen 265 NRQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFA 342 (480)
T ss_pred CccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHH
Confidence 35567777776667666776655553333 35677778889999999999999999999999997 54 44444444444
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccC-Ccccchhhhchh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQY-DETTQLGRKQRS 186 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~ 186 (577)
.++.......+..+ ...+.++....+.|+...+..|...-+..|.. |..| +
T Consensus 343 ~v~~~~l~~~t~~~---------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~ 394 (480)
T KOG2563|consen 343 LVGTLMLLTCTLFL---------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------G 394 (480)
T ss_pred HHHHHHHHHhhccC---------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------c
Confidence 44432222111101 13345666667777777777787777777765 4444 5
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccc----hhHHHHHHHHHHHHHHHHHHhcCcccccc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKG----WQWGFGISTATILLSIPIFLLGSPFYRNK 244 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~g----w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 244 (577)
...|+..+..++-+.+-..+.+.+.+..+ |...-+......++.+.+..+.++++++.
T Consensus 395 tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 395 TSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred ccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 55666666666666666677777777666 44333333334444555555556555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0036 Score=67.54 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=118.0
Q ss_pred CcchhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHH-HhhhcccchhHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYL-ANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGG-FLADAFFTTYRIYVISAA 105 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G-~laD~~~Grr~~l~~~~~ 105 (577)
+.|..+.+++..++....-. +-...+..|+...+++++.+.+...+.......+++++.. .+.-. +|-|+.+.+|+.
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~ 316 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLL 316 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHH
Confidence 34455555555544433332 2221446788899999999999999999999888888887 66666 599999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
...+...+.+++. +.|+.+....+.++. +...|...+++..+.++++ +
T Consensus 317 ~~~~~~~~~af~~-------------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~ 364 (463)
T KOG2816|consen 317 SEFLQLLLFAFAT-------------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------Q 364 (463)
T ss_pred HHHHHHHHHHHhc-------------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------c
Confidence 9999999999986 556677776665554 5667899999999999999 9
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhc
Q 008106 186 SAFFNYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 186 ~~~~~~~~~~~~lG~~igp~~~~~l~ 211 (577)
|+.+++.+....+.+.++|.+-+.+.
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999998877664
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0099 Score=48.00 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 008106 46 YLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQA 118 (577)
Q Consensus 46 ~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~ 118 (577)
.+...+.+ +.++++.++|.++.+++.++..+++.++.+...++.++. .+++.+..+.++..+.++.+++.+
T Consensus 8 RFayTplL-P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 8 RFAYTPLL-PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHhHh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444 667889999999999999999999999999999999996 889999999999999999999876
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.044 Score=61.55 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHH-HHHHHhHHHHhhhcc-cchhHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGT-AFLLALFGGFLADAF-FTTYRIYVISAAIE 107 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~-~~i~~~~~G~laD~~-~Grr~~l~~~~~~~ 107 (577)
+.+....+...++...+-+..+++|-|+.+++|.+++.++.+.+...+. ..++.+++|++..|+ +.-|.+..+.++..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 5577888899999999999999999999999999999999999887666 468999999999987 55666666666655
Q ss_pred HHHHHHHHHHh-----h------------ccCCCCCC-----c------ccccCCCccCC--------------------
Q 008106 108 FMGLLLLTVQA-----H------------TRSLKPPT-----C------VLEDGIASCRE-------------------- 139 (577)
Q Consensus 108 ~~~~~l~~~~~-----~------------~~~~~~~~-----~------~~~~~~~~~~~-------------------- 139 (577)
.+..+.....- + .+.....+ | .+.+-+|+|.+
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 55444422110 0 00111111 1 11122223221
Q ss_pred -----------------------------CCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHH
Q 008106 140 -----------------------------DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFN 190 (577)
Q Consensus 140 -----------------------------~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 190 (577)
+-......+++..++..+-.+...+....++-+..++++ |.-+.|
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 101122333333333444444444566677789999999 999999
Q ss_pred HHHHH-HhhhhHHHHHHHHHhcc
Q 008106 191 YYVFC-LSCGALIAVTFVVWIED 212 (577)
Q Consensus 191 ~~~~~-~~lG~~igp~~~~~l~~ 212 (577)
+..+. .-+|.+-+|++-|++.|
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHh
Confidence 95554 46788889999999865
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.066 Score=58.92 Aligned_cols=172 Identities=14% Similarity=0.005 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH-HHHHHHHHHH-HHH
Q 008106 37 AVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-ISAAIEFMGL-LLL 114 (577)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~-~~~~~~~~~~-~l~ 114 (577)
.+.++..++-...-....-.+.-.+|-+..+.+.+++.+..+..++..++|+++++. -|+.... +...+.+..+ .+.
T Consensus 21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll 99 (521)
T PRK03612 21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALIL 99 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455566677899999999999999999999999999887543 2322211 1111111111 111
Q ss_pred HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHH
Q 008106 115 TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF 194 (577)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 194 (577)
....... ......++...++.++..|+..|....+..+... ++ -++..+..|.
T Consensus 100 ~~~~~~~--------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~ 152 (521)
T PRK03612 100 YAAFAFQ--------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLA 152 (521)
T ss_pred HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHh
Confidence 1111000 0011222333445667777766666555543322 12 3556777888
Q ss_pred HHhhhhHHHHHHHHHhc-cccchh-HHHHHHHHHHHHHHHHHHh
Q 008106 195 CLSCGALIAVTFVVWIE-DNKGWQ-WGFGISTATILLSIPIFLL 236 (577)
Q Consensus 195 ~~~lG~~igp~~~~~l~-~~~gw~-~~f~~~~~~~~~~~~~~~~ 236 (577)
...+|+++|.++.+++. ...|-. ..+.+..+..+++++.++.
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999998887754 456744 4444444444444444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0022 Score=70.70 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHH-HHHHHHhHHHHhhhcc-cchhHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMG-TAFLLALFGGFLADAF-FTTYRIYVISAAI 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~-~Grr~~l~~~~~~ 106 (577)
.+.+....+....+.+..-++.+++|-|++.+++.++++++.+.+...+ +..++.+++|++..|+ ++.|+.+.+..+.
T Consensus 304 Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~ 383 (539)
T PF03137_consen 304 NPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVV 383 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHH
Confidence 3556778888889999999999999999999999999999999988766 4678999999999997 4566776666665
Q ss_pred HHHHHHHHH---HH--hhcc--CCCCCC---cccccCC---Ccc----------------CCCCCchHHHHHHHHHHHHh
Q 008106 107 EFMGLLLLT---VQ--AHTR--SLKPPT---CVLEDGI---ASC----------------REDEGGKAVMLFAGLYIVAL 157 (577)
Q Consensus 107 ~~~~~~l~~---~~--~~~~--~~~~~~---~~~~~~~---~~~----------------~~~~~~~~~~l~~~~~l~g~ 157 (577)
..++.++.. +. ++.+ -+..+- ..+.+.. ..| +.+-......+++..++..+
T Consensus 384 ~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~ 463 (539)
T PF03137_consen 384 SIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSF 463 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHH
Confidence 555444311 10 1100 000000 0000000 112 11212234555565555555
Q ss_pred hcccccccchhhhcccCCcccchhhhchhhhHHHHHH-HHhhhhHHHHHHHHHhccc
Q 008106 158 GVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDN 213 (577)
Q Consensus 158 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~lG~~igp~~~~~l~~~ 213 (577)
..+..........-+..|+++ |+-+.|+..+ .--+|.+-||++.|.+.|.
T Consensus 464 ~~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 464 FTFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 555555555666779999998 9999999555 4467888899999998875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.27 Score=52.58 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=118.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
+.+++..+...+.+++..++-..+..|+..+ |+++...|..=+...+....+.....++.+|+ |..|.=.+++.....
T Consensus 258 q~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~ 335 (432)
T PF06963_consen 258 QPVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWV 335 (432)
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHH
Confidence 4567777777777777777777889999866 99999999999999999999999999999997 999998888887665
Q ss_pred HHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhH
Q 008106 110 GLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFF 189 (577)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 189 (577)
...++..+-..+. .+.+..+...++.+..+.=+|.=+.--+..-++.|..|+++ |+...
T Consensus 336 ~L~~~v~~~~~~~---------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~ 394 (432)
T PF06963_consen 336 CLALCVVSFWAPG---------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVS 394 (432)
T ss_pred HHHHHHHHHhcCC---------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHH
Confidence 5555543321110 00022355666666666556666667788899999999999 99999
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 008106 190 NYYVFCLSCGALIAVTFVV 208 (577)
Q Consensus 190 ~~~~~~~~lG~~igp~~~~ 208 (577)
+......++.-.+...++-
T Consensus 395 gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 395 GVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988888888887765543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.47 E-value=3.7 Score=44.80 Aligned_cols=166 Identities=8% Similarity=0.001 Sum_probs=90.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---CchhhhhHHHHHHH-HHHHHHhHHHHhhhcccchhHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHF---SPSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIYVISA 104 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grr~~l~~~~ 104 (577)
+++++.+.+..++-.+.|-.+. -+.|.+=. +++....+-....+ ...+...+-.+++|++ +|.+++.+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~ 96 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 3556777766666655543222 22222212 34444445443333 3455567779999996 9999888777
Q ss_pred HHHHHHHHHHHHH--hhccCCCCCCcccccCC--CccCCC---------CCchHHHHHHHHHHHHhhcccccccchhhhc
Q 008106 105 AIEFMGLLLLTVQ--AHTRSLKPPTCVLEDGI--ASCRED---------EGGKAVMLFAGLYIVALGVGGIKGSLAPHGA 171 (577)
Q Consensus 105 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~ 171 (577)
..+.....+.++. ++-..+.+ +...+ +...+. .+++...+++.-=+- |.-...-.-+.+..
T Consensus 97 ~~F~~fF~~f~~vlyP~~~~lhp----~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElw--gsvvlSlLFW~fAN 170 (491)
T PF03219_consen 97 IPFLGFFALFAFVLYPNRDILHP----DAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELW--GSVVLSLLFWGFAN 170 (491)
T ss_pred HHHHHHHHHHHHHHhhchhhcCC----CHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 6666555555442 11011100 00000 000000 011111222211111 11111123478889
Q ss_pred ccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc
Q 008106 172 EQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
|.++.+| -.+.++++..+.|+|.+++..+..++.+
T Consensus 171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 8899999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.24 E-value=5.5 Score=43.03 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=51.6
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 462 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 524 (577)
Q Consensus 462 ~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~ 524 (577)
....++..+++..+..-..+....++-.+++.|..-|++|.+.|..+++|+.--..++-.+.+
T Consensus 404 Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 404 YFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 344556677888888888889999999999999999999999999999988776665555443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.3 Score=52.39 Aligned_cols=175 Identities=11% Similarity=-0.019 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----chhhhhHHHHHHHHHHHHHhHHHHhhhcccchh-------HHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFS----PSSSANIVTNFMGTAFLLALFGGFLADAFFTTY-------RIY 100 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s----~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr-------~~l 100 (577)
.+.+++........+--.-+.+..|.++..+-+ +....+..+.-.+.-.+..++..++--|. +|+ .-+
T Consensus 286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KF 364 (498)
T COG3104 286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKF 364 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHH
Confidence 334444444444444444455666665432211 23344555554455555666666666663 433 234
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccch
Q 008106 101 VISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQL 180 (577)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 180 (577)
-+++++...+.+++..... ....|+...+.++++..-+++++|.=++.|...+++....|++-
T Consensus 365 alGl~l~g~~fl~l~~~~~---------------~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~-- 427 (498)
T COG3104 365 ALGLILAGLGFLILLLAGI---------------WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL-- 427 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------hhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH--
Confidence 5555666666666655421 01222334578889999999999999999999999999999988
Q ss_pred hhhchhhhHHHHHHHHhhhhHHHHHHHHH------hccccchhHHHHHHHHHHH
Q 008106 181 GRKQRSAFFNYYVFCLSCGALIAVTFVVW------IEDNKGWQWGFGISTATIL 228 (577)
Q Consensus 181 ~~~~r~~~~~~~~~~~~lG~~igp~~~~~------l~~~~gw~~~f~~~~~~~~ 228 (577)
.+..++.+.+....|..++..+.+. ..+.......|...+...+
T Consensus 428 ----~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i 477 (498)
T COG3104 428 ----KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAI 477 (498)
T ss_pred ----HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHH
Confidence 8899999888888888887666652 2222334455555554433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.16 Score=53.45 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCch---hH
Q 008106 421 RIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLS---MR 497 (577)
Q Consensus 421 ~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~---~r 497 (577)
.+..|.++..+|.++........ ......+...+.+.+.++++|.++.=|....+..++++++ .|
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~------------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPP------------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSS------------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcc------------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 36678888888887755432000 0011234567788889999999999999999999999866 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008106 498 SLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 573 (577)
Q Consensus 498 g~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~ 573 (577)
..+...+...-++|..++..+.+++.+ ..+|...|.+.++..+++++.++.--++++++
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~~-----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQQ-----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHH-----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhcc-----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 667777788888899888888777652 24566678888888888888877766666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.9 Score=47.45 Aligned_cols=317 Identities=10% Similarity=-0.025 Sum_probs=183.3
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCC
Q 008106 61 MHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRED 140 (577)
Q Consensus 61 lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (577)
.+....+.......+.....+..+.....+|-.-|+-..+..-.....+..+...+... .. ..
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a----------------~~ 77 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA----------------IP 77 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc----------------Cc
Confidence 34444455667777888888999999999998766666676666666666777766541 00 01
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhH-
Q 008106 141 EGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQW- 218 (577)
Q Consensus 141 ~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~- 218 (577)
.........+..+.+.++.++..+.-+.+-++..+..+ ..++.+..+++++..+.+.+. ..++..+..... +..
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGC 153 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 11112334456666889999999999999999988655 444557888899988877764 456666655432 321
Q ss_pred -----HHH-HHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCC
Q 008106 219 -----GFG-ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEG 292 (577)
Q Consensus 219 -----~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (577)
.|. ..++..++.++.+.......+..++++.....+.++........
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~--------------------------- 206 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTAL--------------------------- 206 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHH---------------------------
Confidence 232 44444555555555544433333332222111112111111000
Q ss_pred CCCccCCCCCCCCCchhHHHHHHhhcCC--CCCccccc--hhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhh
Q 008106 293 NSNVKEKVPSQKPTEDIKFLNRALRNNP--AYPIVQCT--VKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT 368 (577)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (577)
..+...... ...|.+.. +..+++.+.+.+++.++...+.+++++.+.......+...
T Consensus 207 -------------------~~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~q 267 (654)
T TIGR00926 207 -------------------RKRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQ 267 (654)
T ss_pred -------------------HHhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 000000000 01121111 1112345667777888887888888777766666666666
Q ss_pred ccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 369 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 447 (577)
Q Consensus 369 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~ 447 (577)
.++.-+++...+...+.++.+-.++..++...+..++.++..++ ..++.++.-+.+.+.++.+.++..........
T Consensus 268 a~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 268 ATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66553333322233445556666666666666656777776433 45667788888889988888888876666654
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.46 Score=46.95 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchh
Q 008106 417 THLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM 496 (577)
Q Consensus 417 ~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~ 496 (577)
+++..+.+|.....+|+.+.......+ ....+.|.+.....+.+.+....+........+.+|. .
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 344557778888888887766543211 0113455555555666677777777777777789985 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 497 RSLATSLSWASLAMGYYFSTVLVSIVN 523 (577)
Q Consensus 497 rg~~~g~~~~~~~lg~~~~~~l~~~~~ 523 (577)
||++.|+.-....++..+-+.+...+.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 999999999999998888888777765
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.51 Score=49.80 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhc
Q 008106 144 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE 211 (577)
Q Consensus 144 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~ 211 (577)
+.+..++..+..|+..|+..+++...+.|..|+++ |.-+++...++-++|..++..++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67777778888999999999999999999998888 999999999999999988877765553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.1 Score=37.95 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=54.4
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008106 462 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 523 (577)
Q Consensus 462 ~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~ 523 (577)
+.+.+++.-++.|++........-.+..+...++.|++..++.......+..+|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999988888887765554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.7 Score=45.17 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccC---CchhHH
Q 008106 422 IGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDA---PLSMRS 498 (577)
Q Consensus 422 i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~---P~~~rg 498 (577)
+.++..+..++.+.++..... ..+.......+.+..+|..+.....=+.+.|.. |.+ ||
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 555666665555555554310 123334445556667777777776666666654 555 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 499 LATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 569 (577)
Q Consensus 499 ~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~ 569 (577)
..++.......+|+.++..+.+.+.+. .+.+..|.+.+++.++..+..+++.++
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~~-----------------~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLDS-----------------FGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhc-----------------CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999998887631 122335667777777776666666664
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.42 E-value=6.3 Score=40.24 Aligned_cols=118 Identities=14% Similarity=0.004 Sum_probs=70.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAA 105 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~ 105 (577)
+..-|.++++....++.+..|-+.. ++.+....++| ....+.+. .......++.+.+-.+ +|-|.++.++..
T Consensus 25 ~~~~knv~i~s~~fl~~f~a~~gl~-nlq~~vn~~lg--~~sl~~~y----~~l~~s~m~~~~~Ir~-~g~K~tm~lav~ 96 (390)
T KOG3097|consen 25 LGILKNVLILSIAFLLTFTAYLGLQ-NLQTSVNYDLG--TVSLGALY----LSLIDSSMFMPLLIRF-LGTKWTMVLAVF 96 (390)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhcCcc--cchhhhhh----HHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 3445667777777777766666553 44444443333 22222222 2223344444456666 599999998766
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcc
Q 008106 106 IEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDET 177 (577)
Q Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 177 (577)
.+.+-...--.. .+..++..-...|+|.+..+++-.+++++.-...
T Consensus 97 ~Y~lyiA~Nl~p--------------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y 142 (390)
T KOG3097|consen 97 PYALYIAANLEP--------------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY 142 (390)
T ss_pred HHHHHHHhhcch--------------------------hHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence 655433222111 4455667777889999999999888887776543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.24 E-value=9.3 Score=41.21 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHhHHHHhh---hcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCC-ccCC-----CCCchHHHHH
Q 008106 79 AFLLALFGGFLA---DAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA-SCRE-----DEGGKAVMLF 149 (577)
Q Consensus 79 ~~i~~~~~G~la---D~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~l~ 149 (577)
..++....+.+. ++ +||++.+.++.++..++.++.-+.. +.|. ..+. .-..+.....
T Consensus 292 ~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~-------------p~dap~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 292 EVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF-------------PNDAPLRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred HHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc-------------cccCCCCCCcccccccccchhHHH
Confidence 344444455554 55 4999999999999998888876543 1121 1111 1122344445
Q ss_pred HHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHH
Q 008106 150 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 206 (577)
Q Consensus 150 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~ 206 (577)
+.-+++|++-++........+++.+| ++ |..+++++.+-..++..++-..
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence 55577899999999999999999995 44 6777777666666666555433
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.46 E-value=10 Score=38.41 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008106 469 QYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLV 519 (577)
Q Consensus 469 ~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~ 519 (577)
..++-|+-.+......+--+.+..+++.|-.+|+...+.-++|-.+++.+.
T Consensus 348 lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 348 LILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 334444433444455555566788899999999999988888777776653
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.18 E-value=3.1 Score=44.34 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=103.4
Q ss_pred hHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChh
Q 008106 340 KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHL 419 (577)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~ 419 (577)
......+...+.|....+..+.+... .+.... -.+.....-++..++..|+.+...|+-..|+.||+
T Consensus 36 ~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------ 102 (498)
T KOG0637|consen 36 SVASIAAGVQFGWALELSYLTPYLQS-LGVPHK------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------ 102 (498)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc------cccccccccccccceeccccccccccccccccccc------
Confidence 33333344444455444444444332 233322 23445666778888889999988888887775542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHH
Q 008106 420 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 499 (577)
Q Consensus 420 ~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~ 499 (577)
.-+.++..+.++++.+.++..+.....+++.. ...-+......++.+.++=++.-....+.-++..+..-.+.+-+
T Consensus 103 PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~----~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~ 178 (498)
T KOG0637|consen 103 PFILAGSLLIAVSLFLIGYAADIGLLLGDNER----KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT 178 (498)
T ss_pred chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc----cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh
Confidence 23666777788888777765433222221111 00112344445566677777777777788999999998777777
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Q 008106 500 -ATSLSWASLAMGYYFSTVLVSI 521 (577)
Q Consensus 500 -~~g~~~~~~~lg~~~~~~l~~~ 521 (577)
+++.+.++-.+|+.+|-.+.++
T Consensus 179 ~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 179 RANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred ccchhHHHHHHhcceeeeecccc
Confidence 9999999999999998887654
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=85.46 E-value=24 Score=34.94 Aligned_cols=58 Identities=14% Similarity=0.342 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHHhhhhHHHHHHHHHh---cc--ccchhHHHHHHHHHHHHHHHHHHhcCccc
Q 008106 184 QRSAFFNYYVFCLSCGALIAVTFVVWI---ED--NKGWQWGFGISTATILLSIPIFLLGSPFY 241 (577)
Q Consensus 184 ~r~~~~~~~~~~~~lG~~igp~~~~~l---~~--~~gw~~~f~~~~~~~~~~~~~~~~~~~~~ 241 (577)
+|+....+..++.++|+++.-...-.- .+ ...|++++.+.+++.++-++++....++.
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 367777777788899999885442211 11 12499999988887777666665554443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.04 E-value=60 Score=34.97 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=52.1
Q ss_pred ehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008106 462 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIV 522 (577)
Q Consensus 462 ~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~ 522 (577)
+.++.++..++.|+..+......+.+.-+.++++.|..+..+...+..+|-..|+.+.-.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667789999999999999999999999999999999999999898988888874433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.45 E-value=3.9 Score=44.05 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHH
Q 008106 144 KAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTF 206 (577)
Q Consensus 144 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~ 206 (577)
+.+..++..++.|+..|-.......+..+..++++ |..+-.+..+..++|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777889999999988888888888887776 7777777777778888777654
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.29 E-value=7.7 Score=38.55 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhhhcccch--hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchH
Q 008106 68 SANIVTNFMGTAFLLALFGGFLADAFFTT--YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 145 (577)
Q Consensus 68 ~~~~~~~~~~~~~i~~~~~G~laD~~~Gr--r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (577)
-|.+.+.++++..+++-+...+..+- .. ...+.+.+++......+..+..+ .. ++..+.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~-vs-----------------P~kes~ 344 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS-VS-----------------PSKESP 344 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc-cC-----------------CCcCCc
Confidence 37888888888777776666665542 21 12344444444444333322221 11 111234
Q ss_pred HHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHH
Q 008106 146 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 225 (577)
Q Consensus 146 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~ 225 (577)
..-+++..+.-...|..+|...-+=..+.|++. |+..++++..-.|+-.-++-...-.=....+-|..|.++.+
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 444666666777889999999999999999998 99999999888777665542110000112356778888877
Q ss_pred HHHHHHHH
Q 008106 226 TILLSIPI 233 (577)
Q Consensus 226 ~~~~~~~~ 233 (577)
....+.+.
T Consensus 419 ~~~~a~i~ 426 (454)
T KOG4332|consen 419 FLFVASIL 426 (454)
T ss_pred HHHHHHHH
Confidence 76655443
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.20 E-value=8.3 Score=39.81 Aligned_cols=102 Identities=9% Similarity=-0.052 Sum_probs=56.7
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCC
Q 008106 461 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 540 (577)
Q Consensus 461 ~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 540 (577)
-++|+.-..|++......+..+....-+.+....+.-|...|++.+..-+=..+-+. ++.+. ++.+-+--.+
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~---iVvd~--~g~~L~ir~Q--- 395 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTL---IVVDD--RGLGLDIRTQ--- 395 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheE---EEEcc--cccCCCccee---
Confidence 367888888888877777777776666666666777777777777543322222111 11110 0000000000
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008106 541 NHYHLERFYWLMCILGGLNFLHFLFWAARYK 571 (577)
Q Consensus 541 ~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~ 571 (577)
..-+..+|.+++++.++...+.+..-++-+
T Consensus 396 -~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~~~ 425 (433)
T KOG3810|consen 396 -FVVYSSYFIVLGVIFLIGFGIEYLMCRRNK 425 (433)
T ss_pred -EEEEeehHHHHHHHHHHHHHHHHHHhhcCC
Confidence 123445788899998888776554444433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.19 E-value=81 Score=34.28 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---chhhhhHHHHHHH-HHHHHHhHHHHhhhcccchhHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFS---PSSSANIVTNFMG-TAFLLALFGGFLADAFFTTYRIYVISA 104 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~-~~~i~~~~~G~laD~~~Grr~~l~~~~ 104 (577)
++++..+.+..+|-.+.|+.+. -+.+.+..+ +.....+-...-. .+.+..++-+++.++. -|.+++.+-.
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~ 99 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL 99 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence 4567777777777666655443 234555544 4444556666555 4567788889999996 9999988888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCcccccCCC-ccC------C---------CCCchHHHHHHHHHHHHhhcccccccchh
Q 008106 105 AIEFMGLLLLTVQAHTRSLKPPTCVLEDGIA-SCR------E---------DEGGKAVMLFAGLYIVALGVGGIKGSLAP 168 (577)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~------~---------~~~~~~~~l~~~~~l~g~g~g~~~~~~~~ 168 (577)
..+....+++++.-. | .+.-...++ +.+ | .++++...+++.-=+-| .=...-.-..
T Consensus 100 ~~F~~fF~LFa~Vi~-P-----~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~S~lFw~ 171 (509)
T COG3202 100 GFFLGFFALFAFVIY-P-----YKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVLSLLFWQ 171 (509)
T ss_pred HHHHHHHHHHHHHHh-c-----cccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 777777777765421 1 110000110 011 1 11233333332221111 0011113456
Q ss_pred hhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcc
Q 008106 169 HGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED 212 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~ 212 (577)
...|.+..++ -.+.+++++++.|++..++..+..++..
T Consensus 172 faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 172 FANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7789998888 8999999999999999999999988866
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 577 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 326 bits (837), Expect = e-105
Identities = 93/561 (16%), Positives = 205/561 (36%), Gaps = 60/561 (10%)
Query: 18 NKPALRGRHGGMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSP------SSSANI 71
N P + + +++A E E ++ + L +L + S + + ++
Sbjct: 2 NSPVDAPKWPRQIP--YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDV 59
Query: 72 VTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLE 131
+F+ + L GG++AD FF Y + + I +G L + H+
Sbjct: 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ--------- 110
Query: 132 DGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191
+ GL+++ALG GGIK ++ +Q+D++ + F+
Sbjct: 111 ---------------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQS---NKSLAQKAFDM 152
Query: 192 YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPL 251
+ F ++ G+ A + + N G FGI + ++ F LG Y + P
Sbjct: 153 FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP 212
Query: 252 TTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKF 311
V+ +A+ + K + V + + + + + + + F
Sbjct: 213 HGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGL-CCAMVLVMGF 271
Query: 312 LNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNT 371
+ V+ V+ V++I +F Q ++ + QA M
Sbjct: 272 VGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM-- 329
Query: 372 KLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIV 431
+ PA + + +++L P N V+ P ++ +T L+++G G+ ++ +
Sbjct: 330 -VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGL 385
Query: 432 AMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTD 491
+ V +++ ++ W L Y L ++ A +EF ++
Sbjct: 386 SWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433
Query: 492 APLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWL 551
AP +M+ S S+ +G + + V + T T + + ++ + F++
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFA 489
Query: 552 MCILGGLNFLHFLFWAARYKY 572
L + F +A Y+
Sbjct: 490 --GFAILAAIVFALYARSYQM 508
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 34/216 (15%)
Query: 35 VLAVEVLENLAYLANASNLVLYLSKF-----MHFSPSSSANIVTNFMGTAFLLALFGGFL 89
+ E+ E +Y + L+ Y+ +H + +++A+I+ + +L GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 90 ADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLF 149
AD + +G ++L + A LF
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVLALPFG-------------------------ASALF 112
Query: 150 AGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVW 209
+ ++ +G G +K +++ YDE ++R A F+ +VF ++ GA IA V
Sbjct: 113 GSIILIIIGTGFLKPNVSTLVGTLYDE----HDRRRDAGFSIFVFGINLGAFIAPLIVGA 168
Query: 210 IEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKI 245
++ G+ F ++ + + + ++ G +
Sbjct: 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPH 204
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 59/423 (13%), Positives = 119/423 (28%), Gaps = 143/423 (33%)
Query: 35 VLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAF- 93
+L+ E ++++ +A + L L F S +V F+ L + FL
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRL--FWTLL-SKQEEMVQKFVEEV--LRINYKFLMSPIK 99
Query: 94 ------------FTTYRIYVISAAIEFMGL------LLLTVQAHTRSLKPPTCVLEDGIA 135
+ R + + F L ++ L+P VL DG+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 136 SCREDEGGKAVM-------------LFAGLYIVALGVGGIKGSL---------------- 166
GK + + ++ + L ++
Sbjct: 160 GS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 167 -APHGAEQYDETTQLGRKQRSAFFNY--YVFCLSCGALIAVTFV--VWIEDNKGWQWGFG 221
+ + + Y CL L+ + V + K W F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LV----LLNVQ--NAKAWN-AFN 263
Query: 222 ISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSS 281
+S IL LTT FK +T + S+ T +
Sbjct: 264 LS-CKIL----------------------LTTRFKQVTDFL--------SAATTTHISLD 292
Query: 282 PTCSNESRDEGNS------NVK-EKVPSQKPTED---IKFLNRALRNNPA----YPIVQC 327
+ DE S + + + +P + T + + + ++R+ A + V C
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 328 TVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLG----SLKVPPASL 383
+++ +++ L L ++ M +L S +P L
Sbjct: 353 -----DKLTTIIES------------SLNVLEPAEYRK---MFDRLSVFPPSAHIPTILL 392
Query: 384 PVF 386
+
Sbjct: 393 SLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 69/525 (13%), Positives = 138/525 (26%), Gaps = 182/525 (34%)
Query: 172 EQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVV-WIEDNKGWQWGFGISTATILLS 230
E+ D ++ + FV + N + I T S
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPS 106
Query: 231 IPIFLLGSPFYRNKIPTGSPLTTIFKV--------LTAAIFN------------------ 264
+ + R+++ + + + V L A+
Sbjct: 107 MMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 265 -----TCKSK------------------NSSNAVTE----VHSSPTCSNESRDEGNSNVK 297
C S NS V E + + SR + +SN+K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 298 EKVPSQKPTEDIK-FLNRALRNNPAYPI------------------VQCTV------KEV 332
I+ L R L++ P Y + C + K+V
Sbjct: 225 L------RIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 333 EEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATM-----NTKLGSLKVPPASLPVFP 387
+ I + T + + ++ + + L P L P
Sbjct: 278 TDFLSAATTTHISLDHH--------SMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNP 327
Query: 388 VIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVA 447
+I + + + A + + + + +I+ ++ L + +++
Sbjct: 328 RRLSIIAESIRDGL----AT--------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 448 VNSGLVNSSEPLP---ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS 504
+ S +P ++ +W + +D + + L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIK-------------------SDVMVVVNKLHKY-- 414
Query: 505 WASLA-----------MGYYFSTVLV---------SIVN--NITSTYRH----TPWLFGS 538
SL Y + SIV+ NI T+ P+L
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 539 NLNH--YHL------ERFYWLMCILGGLNFLHFLFWAARYKYSST 575
+H +HL ER + FL F F + ++ ST
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDST 512
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.92 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.21 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.06 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.9 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.16 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=278.35 Aligned_cols=441 Identities=18% Similarity=0.287 Sum_probs=299.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCCchhhhhHHHHHHHHHHHHHhHHHHhhhc-ccchhHH
Q 008106 26 HGGMLAACFVLAVEVLENLAYLANASNLVLYLSKF-----MHFSPSSSANIVTNFMGTAFLLALFGGFLADA-FFTTYRI 99 (577)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Grr~~ 99 (577)
++++|.++.+.+..++.++.+|++..+++.|++++ +|.+..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567889999999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccc
Q 008106 100 YVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQ 179 (577)
Q Consensus 100 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 179 (577)
+.++.++.+++.+++++++ +.+.++++|+++|++.|...+...+++.|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF-------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHHhh-------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 9999999999999988765 566799999999999999999999999999998661
Q ss_pred hhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHHH
Q 008106 180 LGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNK---IPTG-SPLTTIF 255 (577)
Q Consensus 180 ~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ 255 (577)
+|+.++++++...++|..++|.+++++.+..||++.|++.++..+++++++++..++..++ ++++ ....+..
T Consensus 143 ----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 143 ----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 2667788899999999999999999999999999999998777666655554433222111 1111 1111111
Q ss_pred HHHHH-------------HHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHH---Hhhc-
Q 008106 256 KVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNR---ALRN- 318 (577)
Q Consensus 256 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 318 (577)
+.... .....+ .. +..+....... ....
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~--~~---------------------------------~~~~~~~~~~~~~~~~~~~ 263 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVG--WN---------------------------------SLPAYINLLTIVAIAIPVF 263 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHS--SC---------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--Cc---------------------------------ccccchhhhhHHHHHHHHH
Confidence 11000 000000 00 00000000000 0000
Q ss_pred CCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhh-ccccCCccccCCCCCCCcChhhhHHHhhh
Q 008106 319 NPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT-MNTKLGSLKVPPASLPVFPVIFILILAPV 397 (577)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 397 (577)
.....|++... ...++++......++.....++..+.+..+.+..+... .+.. ....+.+.....+..++..++
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 264 YFAWMISSVKV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHH
Confidence 00000110000 01223333344445555556666666655554433222 1211 134566677777888888888
Q ss_pred hhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHH
Q 008106 398 YNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSAD 477 (577)
Q Consensus 398 ~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 477 (577)
.+++.|++.||. .....++..+..+..+++++........ +...+.+.++.++.+++.+++.
T Consensus 339 ~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 339 FAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY------------GTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp HHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC------------CCCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCCccHHHHHHHHHHHHHHH
Confidence 888877776653 3445667788888888877766543211 0012346778888899999999
Q ss_pred HHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHH
Q 008106 478 LFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGG 557 (577)
Q Consensus 478 ~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~ 557 (577)
+...|..++++.+..|++.||+++|+.++...+|..+++.+.+.+.+ .++...|+.++++++
T Consensus 401 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 401 MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA------------------KSEVAYFSYFGLGSV 462 (491)
T ss_dssp HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG------------------SSTTHHHHHTHHHHH
T ss_pred HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777642 233457888888888
Q ss_pred HHHHHHHHHhhhccc
Q 008106 558 LNFLHFLFWAARYKY 572 (577)
Q Consensus 558 l~~v~~~~~~~~~~~ 572 (577)
+..++.++..++.++
T Consensus 463 ~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 463 VLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777766554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=278.57 Aligned_cols=474 Identities=19% Similarity=0.336 Sum_probs=290.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMH------FSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV 101 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~ 101 (577)
++|.++.+.+..++.++.+|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45667889999999999999999999999999999 999999999999999999999999999999439999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchh
Q 008106 102 ISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLG 181 (577)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (577)
++.++..++.+++++++. +.+.++++|++.|++.+...+...+++.|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEH------------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHTSS------------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHhcc------------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 999999999998887641 46778899999999999999999999999999888
Q ss_pred hhchhh---hHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHH
Q 008106 182 RKQRSA---FFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVL 258 (577)
Q Consensus 182 ~~~r~~---~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (577)
|++ .+++++...++|..++|.+++++.+..||++.|++.++..+++++.+++..++.+++++++++..+..+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 754 45558999999999999999999988999999999888777666665554443333222222211111111
Q ss_pred HHHHHhhccCCCCCCc-------ccccccCCCCCCCCccCCCCCccCCCCCCCCCch---hHHHHHHhhcCCCCCcc---
Q 008106 259 TAAIFNTCKSKNSSNA-------VTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTED---IKFLNRALRNNPAYPIV--- 325 (577)
Q Consensus 259 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--- 325 (577)
....+++..+.+.... ..... ... .......... ..+....+ ....+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 281 (524)
T 2xut_A 220 RSALLTKVEGKGNIGLVLALIGGVSAAY-------ALV---------NIPTLGIVAGLCCAMVLVMGF--VGAGASLQLE 281 (524)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHH-------TGG---------GTTTTCSSHHHHHHHHHHHHH--HHTGGGTHHH
T ss_pred HHHHhhhhcccCccchhhhhhhhhhhhh-------hhc---------ccchhhhhhhhhhhhhhhhcc--cccchhhHHh
Confidence 1111110000000000 00000 000 0000000000 00000000 0000110
Q ss_pred ----ccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhh
Q 008106 326 ----QCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHV 401 (577)
Q Consensus 326 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (577)
...+.+.+++++......++.....++..+.+..+.+..+...++... + .+.+.+...+.+..++..++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 282 RARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp HSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred hhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhh
Confidence 001111233444444444555555566666666665555443333221 0 133445566667777788888877
Q ss_pred hhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHH
Q 008106 402 IIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTL 481 (577)
Q Consensus 402 ~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 481 (577)
..+..+|..++ .+..+++..|..+.++++++.+..+... +.....+.+++++.+++.+++++...
T Consensus 359 ~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~ 423 (524)
T 2xut_A 359 LYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVS 423 (524)
T ss_dssp ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------TTTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 65555554333 4455667778877777776655421000 00112466778888999999999999
Q ss_pred hhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH
Q 008106 482 AGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFL 561 (577)
Q Consensus 482 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v 561 (577)
|..++++.+.+|++.||+++|+.++...+|+.+++.+.+.+.+.+. .+|.+..+. +.....|++.+++++++.+
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 497 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGM--SVTAFQMFFFAGFAILAAI 497 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccc--cccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998763110 012110000 0012237888888888888
Q ss_pred HHHHHhhhcccc
Q 008106 562 HFLFWAARYKYS 573 (577)
Q Consensus 562 ~~~~~~~~~~~~ 573 (577)
+++++.++++++
T Consensus 498 ~~~~~~~~~~~~ 509 (524)
T 2xut_A 498 VFALYARSYQMQ 509 (524)
T ss_dssp HHC---------
T ss_pred HHHHHHHHhccc
Confidence 887777666543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=242.95 Aligned_cols=403 Identities=8% Similarity=-0.058 Sum_probs=256.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
++.++.+.+..++..+..+.+...++.+. +++ .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 45566777777777777776666666555 567 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----HhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 109 MGLLLLTV----QAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 109 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
++.+++++ ++ +.+.++++|+++|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 152 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHHHHhhhhccc-------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence 99999988 65 45678999999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHH
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIF 263 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (577)
|++.+++.+...++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.++.....+.
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 219 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------- 219 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------
Confidence 9999999999999999999999999888888 99999988877665544443333321111100000
Q ss_pred hhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHH
Q 008106 264 NTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFP 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (577)
++. +.+ .++ +.+. +. ....++++....+....+.++..
T Consensus 220 --------~~~------------~~~-~~~--~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~-- 257 (451)
T 1pw4_A 220 --------EEY------------KND-YPD--DYNE--KA---------------EQELTAKQIFMQYVLPNKLLWYI-- 257 (451)
T ss_dssp --------TTT------------CCC---------------------------------CCTHHHHHHTSSCHHHHHH--
T ss_pred --------hhh------------ccc-ccc--cchh--hh---------------hcccccccchHHHHHcCHHHHHH--
Confidence 000 000 000 0000 00 00000000000000001222111
Q ss_pred HHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHH
Q 008106 344 IFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIG 423 (577)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~ 423 (577)
.....+..........++..+ .....+-.....+.+.....++.+++.++.+++.|++.+ ++++.+.
T Consensus 258 -~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~ 324 (451)
T 1pw4_A 258 -AIANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATG 324 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHH
Confidence 111111111111111222211 111111001111223333444555556666666555410 1122233
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHH
Q 008106 424 TGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS 502 (577)
Q Consensus 424 ~g~~l~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g 502 (577)
.+..+.. ++++++... ...+.+......++.|++.....+..+++..+..|++.||+++|
T Consensus 325 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHHHHHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 4443333 444433321 01245556667788888888888888999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 503 LSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAAR 569 (577)
Q Consensus 503 ~~~~~~~l-g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~ 569 (577)
+.+....+ |..+++.+.+.+.+. .++...|++.+++++++.++++...++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDF-----------------FGWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-----------------SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------------cCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999988741 235567888888888887776665443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=233.24 Aligned_cols=352 Identities=14% Similarity=0.133 Sum_probs=231.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 28 GMLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
+++.+..+.+..++..+....+...+ .++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 45556666666667767666555455 457789999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHH---HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhc
Q 008106 108 FMGLLLL---TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQ 184 (577)
Q Consensus 108 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (577)
+++.+++ .+++ +.+.++++|++.|++.|...+...+++.|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 150 (438)
T 3o7q_A 102 ALGAALFWPAAEIM-------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_dssp HHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------
T ss_pred HHHHHHHHhccccc-------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------
Confidence 9999998 5544 67889999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHhhhhHHHHHHHHHhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC
Q 008106 185 RSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG-------------------------WQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 185 r~~~~~~~~~~~~lG~~igp~~~~~l~-~~~g-------------------------w~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
|++.+++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.+++.+
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 230 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK 230 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999988 5554 99999877665554444443321
Q ss_pred -ccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhh
Q 008106 239 -PFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALR 317 (577)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (577)
++.++++++++ + + .....++.
T Consensus 231 ~p~~~~~~~~~~-------------------------------------------------~--~--~~~~~~~~----- 252 (438)
T 3o7q_A 231 FPALQSDNHSDA-------------------------------------------------K--Q--GSFSASLS----- 252 (438)
T ss_dssp CCCCTTTCCCCS-------------------------------------------------S--T--TSHHHHHH-----
T ss_pred CCcccccccccc-------------------------------------------------c--c--cchhhhHH-----
Confidence 11100000000 0 0 00000000
Q ss_pred cCCCCCccccchhhhhHHHHHHhHH-HHHHHhHHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhh
Q 008106 318 NNPAYPIVQCTVKEVEEVKIVVKIF-PIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAP 396 (577)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 396 (577)
+....+.++... ..+.....+.......+.++.....+.+.. ..+.+.....++.+++.+
T Consensus 253 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~ 313 (438)
T 3o7q_A 253 -------------RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG------FAANYLTGTMVCFFIGRF 313 (438)
T ss_dssp -------------HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH------HHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh------HHHHHHHHHHHHHHHHHH
Confidence 000011111111 111111111111111111101111111111 112223333444555566
Q ss_pred hhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHH
Q 008106 397 VYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSA 476 (577)
Q Consensus 397 l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 476 (577)
+.+++.|++.+| +.+..+.++..+++++.... +..+.+..+++.+++
T Consensus 314 ~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~ 360 (438)
T 3o7q_A 314 TGTWLISRFAPH-----------KVLAAYALIAMALCLISAFA----------------------GGHVGLIALTLCSAF 360 (438)
T ss_dssp HHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHc----------------------CCcHHHHHHHHHHHH
Confidence 666665554333 33555666666665555441 222344556788888
Q ss_pred HHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008106 477 DLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNN 524 (577)
Q Consensus 477 ~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~ 524 (577)
.....|..+++..+..|++ ++.+.++.. .+.+|..+++.+.+.+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888999999999999987 999999887 667999999999998874
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=228.69 Aligned_cols=410 Identities=14% Similarity=0.109 Sum_probs=225.1
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchH
Q 008106 66 SSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKA 145 (577)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (577)
.+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++........+.. .--..-..+.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-------~~~~~~a~~~ 126 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-------TVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-------SCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-------HHHHHHhhhH
Confidence 4567888889999999999999999997 9999999999999999999986431110000000 0000012267
Q ss_pred HHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhccc--------cchh
Q 008106 146 VMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------KGWQ 217 (577)
Q Consensus 146 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~--------~gw~ 217 (577)
+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|+
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 899999999999999999999999999999999 99999999999999999998887765432 3467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCccCCCCCcc
Q 008106 218 WGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVK 297 (577)
Q Consensus 218 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (577)
..+.+..+..++.+...++.++..+.... +.+.++..+.+.....+... + +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~-~~~~~~a~~~l~~~~~~~~~----~------------------------~ 251 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMS-RGKQEQAEGILRKIMGNTLA----T------------------------Q 251 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHH-TTCHHHHHHHHHHHHHHHHH----H------------------------H
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHH-cCchhHHHHhHHHhcCCchh----H------------------------H
Confidence 66666555544444433332211110000 01111111111111000000 0 0
Q ss_pred CCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHhHHHHhhhhccchhHHhhhhhccccCCccc
Q 008106 298 EKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK 377 (577)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (577)
+. .+..+..++.+.. . ........++.........++. +. .. .....+........+...
T Consensus 252 ~~------~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~--~~---~~-~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 252 AV------QEIKHSLDHGRKT----G----GRLLMFGVGVIVIGVMLSIFQQ--FV---GI-NVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HH------HHHHHHHHHHHHH----T----THHHHSCCTHHHHHHHHHHHHH--HT---CH-HHHHHHHHHHHHHSSCCH
T ss_pred HH------HHHHHHHHhhhhh----h----hHHHHhcccHHHHHHHHHHHHH--Hh---hh-hHHHhcchHHHHhcCCCc
Confidence 00 0000000000000 0 0000000111111111101000 00 00 000001001111100000
Q ss_pred cCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 008106 378 VPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE 457 (577)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 457 (577)
...........+..++...+...+.|++.|| +.+..+...+.++++..+.....
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~--------------- 365 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT--------------- 365 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc---------------
Confidence 0011111222333444455555666655554 22455666666666555443211
Q ss_pred CcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCccC
Q 008106 458 PLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 537 (577)
Q Consensus 458 ~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~ 537 (577)
...++..++..+++.........|..+.+..|.+|.+.|++++|+....+.+++.+++.+.+.+.+.. |..
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~- 436 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV- 436 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH-
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-
Confidence 00122222222233333333455778899999999999999999999999999999999888775321 100
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 008106 538 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSSTG 576 (577)
Q Consensus 538 ~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~~~~ 576 (577)
...+....|++++++++++.++.+++.+++|+++.|
T Consensus 437 ---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 437 ---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 012233468899999999999999999999887753
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-23 Score=215.55 Aligned_cols=167 Identities=10% Similarity=0.086 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 008106 33 CFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLL 112 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~ 112 (577)
+.+.+..++..+......+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 456666777777777676666654 578999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH
Q 008106 113 LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY 192 (577)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 192 (577)
++.+++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~~~~~-------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 129 (375)
T 2gfp_A 81 VAVTTS-------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLL 129 (375)
T ss_dssp HHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHH
T ss_pred HHHHhc-------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHH
Confidence 998876 67889999999999999999999999999999988 99999999
Q ss_pred HHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q 008106 193 VFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIP 232 (577)
Q Consensus 193 ~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~ 232 (577)
+...++|..++|.+++++.+..||++.|.+.++..++..+
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999987776555444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=215.90 Aligned_cols=392 Identities=10% Similarity=0.015 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFM 109 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~ 109 (577)
|.++.+....++..+.+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||.+.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4577777777777777777788999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 110 GLLLL---TVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 110 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
+.... .+... ....+..++.+.+++.|...+...+...++.++.. .+++
T Consensus 86 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPL------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp CHHHHHHHTHHHH------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 32211 22110 00012334444444444444444444545444321 1156
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTC 266 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (577)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..++.+++. +++.+.
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------- 197 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV---------------- 197 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS----------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc----------------
Confidence 66777777788999999999999876 5899999876655433333222221110 000000
Q ss_pred cCCCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHH
Q 008106 267 KSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFM 346 (577)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (577)
. +.. + +. . +..+..++. +.-..++.+.......
T Consensus 198 ---~----------------~~~------~-~~--~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 230 (417)
T 2cfq_A 198 ---A----------------NAV------G-AN--H-SAFSLKLAL------------------ELFRQPKLWFLSLYVI 230 (417)
T ss_dssp ---S----------------SSS------S-SC--C-CCCCHHHHH------------------HHTTCHHHHHHHHHHH
T ss_pred ---c----------------ccc------c-cc--c-ccccHHHHH------------------HHhcCCchhhHHHHHH
Confidence 0 000 0 00 0 000000000 0000122211111111
Q ss_pred H-hHHHHhhhhccchhHHhhhhhccccCCccccCC---CCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHH
Q 008106 347 S-TIMLNCCLAQLSTFSVQQAATMNTKLGSLKVPP---ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRI 422 (577)
Q Consensus 347 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i 422 (577)
. ...+.....+.+.++... .... +... +.....+.+..+++..+.+++.||+.+| +.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l 292 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSF---FATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NAL 292 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---SSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---Hhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHH
Confidence 1 111112111211121110 1100 0000 1112223333444555556665555433 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHH
Q 008106 423 GTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATS 502 (577)
Q Consensus 423 ~~g~~l~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g 502 (577)
..+..+..++++..+.. .+.+.++....+.+++.....+..+.++.|..|++.||++.+
T Consensus 293 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g 351 (417)
T 2cfq_A 293 LLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 55665555554443321 133444555566677766677777899999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008106 503 LS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 573 (577)
Q Consensus 503 ~~-~~~~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~~ 573 (577)
+. +..+++|+.+++.+.+.+.+ ..++...|.+.+++++++.++++...++.++.
T Consensus 352 ~~~~~~~~lg~~~gp~l~G~l~~-----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 352 VCFCFFKQLAMIFMSVLAGNMYE-----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHTTTHHHHHHHHTHHHHTHHH-----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHhHHHHHhhhhHHHHHH-----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 94 88888999999999988763 12455678888888888888776666655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=143.28 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=151.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhccc--chhHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFF--TTYRIYVISAAI 106 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Grr~~l~~~~~~ 106 (577)
.+.++.+.+..++..+.++++..++|.|+++.+|+++.+.+.+.+...++..++.++.|+++|| + |||+.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4568888888999999999999999999998899999999999999999999999999999999 6 899988888777
Q ss_pred HH-HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhch
Q 008106 107 EF-MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQR 185 (577)
Q Consensus 107 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 185 (577)
.. ++.+++.+.+ ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |
T Consensus 330 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 330 LVTIATIVYWMNP-----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHHTTSCC-----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHHhc-----------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 66 5555444321 0145566777778888888888888899999999998 9
Q ss_pred hhhHHHHHHHHhh-hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhc
Q 008106 186 SAFFNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 186 ~~~~~~~~~~~~l-G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 237 (577)
++.+++++...++ |..++|.+.|++.+..||+..|++.++..+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999998887776666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=135.75 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=139.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLY-LSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIE 107 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~ 107 (577)
.+.++...+..++....++.+..+++.| +++.+|.+..+++.+.+...++..++.+++|+++||+ |||+.+.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3557788888888888889999999999 8888899999999999999999999999999999996 9999999999888
Q ss_pred HHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhh
Q 008106 108 FMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSA 187 (577)
Q Consensus 108 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (577)
.++.+++.+.+ +.. ..+..++.|++.+...+...++..|.+|++ ++.
T Consensus 336 ~~~~~~~~~~~-------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~ 382 (438)
T 3o7q_A 336 MALCLISAFAG-------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKY 382 (438)
T ss_dssp HHHHHHHHHCC-------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHH
T ss_pred HHHHHHHHHcC-------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccc
Confidence 88887777654 233 233447788898988999999989998854 455
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHH
Q 008106 188 FFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTATILLSIPI 233 (577)
Q Consensus 188 ~~~~~~~~~~lG~~igp~~~~~l~~~~g-w~~~f~~~~~~~~~~~~~ 233 (577)
+.++.. ...+|..++|.+.|++.+..| ++..|.+.++..++.++.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 555554 567999999999999999998 999998876655544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-12 Score=131.37 Aligned_cols=178 Identities=8% Similarity=0.022 Sum_probs=130.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---chhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFS---PSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI 106 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~ 106 (577)
+.++...+..++....++....++|.|+.+.++.. ..+.+...+...+...++.++.|+++||+ |||+.+.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 34555555545555555566667888987766532 33445666666677788899999999997 999999988888
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+++.++.++.+ +.+.+++..++.+++.+...+....++.|.+|++. |+
T Consensus 299 ~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 347 (417)
T 2cfq_A 299 MSVRIIGSSFAT-------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SA 347 (417)
T ss_dssp HHHHHHHHTTCC-------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HH
T ss_pred HHHHHHHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HH
Confidence 777665554432 34455566666777766666667789999999988 99
Q ss_pred hhHHH-HHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 008106 187 AFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSP 239 (577)
Q Consensus 187 ~~~~~-~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 239 (577)
++.++ ++...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99888 577888999999999999998889999998888777766665544333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=128.48 Aligned_cols=187 Identities=12% Similarity=0.004 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHH-----HHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYV-----ISAAI 106 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~-----~~~~~ 106 (577)
.+.+.+..++....+......++.|+++.++.+..+.+.+.....+...++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 45556666677777777788899999998998888888888888888999999999999997 9987655 77777
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 107 EFMGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
..++.+++.+...... +....+.+.+.+..++.|++.+...+...+++.|.+|++. |+
T Consensus 364 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g 421 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS 421 (491)
T ss_dssp HHHHHTTTHHHHHHCC----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred HHHHHHHHHHHHHhcC----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 7777766665431100 0111245566777788999999989999999999999999 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCcccc
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYR 242 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 242 (577)
.+.++++...++|..++|.+.+++.+ .++...|.+.++..+++.++.++..++.+
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988866 46777787777666666555555544433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=117.50 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHH
Q 008106 32 ACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGL 111 (577)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~ 111 (577)
........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 34444444444444333334444566678888888877777778888899999999999997 99999999998888887
Q ss_pred HHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHH
Q 008106 112 LLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY 191 (577)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 191 (577)
+.++...... ............+..+++.+ ..+....+.+|.+|++. |+++.++
T Consensus 357 ~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~------R~~~~g~ 410 (491)
T 4gc0_A 357 FSLGTAFYTQ-------------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAI------RGKALAI 410 (491)
T ss_dssp HHHHHHHHTT-------------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred HHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhH------HHHHHHH
Confidence 7766543211 00111222222222333333 34667789999999999 9999999
Q ss_pred HHHHHhhhhHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHHHHHhcCccccc
Q 008106 192 YVFCLSCGALIAVTFVVWIED------NKGWQWGFGISTATILLSIPIFLLGSPFYRN 243 (577)
Q Consensus 192 ~~~~~~lG~~igp~~~~~l~~------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 243 (577)
.+...++|+.+++.+.+.+.+ ..++...|++.+++.+++.+..++..||.++
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 999999999999888766643 2355667777777776666666555565443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-10 Score=117.18 Aligned_cols=163 Identities=12% Similarity=0.025 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHH-HH
Q 008106 30 LAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAI-EF 108 (577)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~-~~ 108 (577)
|.++...+..++....++.+..++|.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5577788888888888899999999999988999999999999999999999999999999996 883 2333332 22
Q ss_pred HHHH--HHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchh
Q 008106 109 MGLL--LLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRS 186 (577)
Q Consensus 109 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 186 (577)
.+.. ....... .+.+.+++..++.|++.+...+...+++.|.+| ++ |+
T Consensus 276 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g 325 (375)
T 2gfp_A 276 AGLLMWIPDWFGV-----------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AG 325 (375)
T ss_dssp TSSSSSHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HH
T ss_pred HHHHHHHHhhhcc-----------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cc
Confidence 2222 1222110 044556677788899999999999999999998 66 99
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHH
Q 008106 187 AFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTA 225 (577)
Q Consensus 187 ~~~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~ 225 (577)
+..++.+...++|..++|.+.+.+.+..+|+..+.+.++
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999999999999999887788877776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=95.19 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHhh----hcccch----hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccCC
Q 008106 68 SANIVTNFMGTAFLLALFGGFLA----DAFFTT----YRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCRE 139 (577)
Q Consensus 68 ~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (577)
.+.+.....++..+..++.+++. ||+ || ++.+.++.++.+++.+++++..... +.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~ 399 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM----------------DG 399 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------------TT
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----------------cC
Confidence 44444444444555556666654 443 43 3456677777776666655432100 00
Q ss_pred CCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHhcccc--ch-
Q 008106 140 DEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNK--GW- 216 (577)
Q Consensus 140 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l~~~~--gw- 216 (577)
....+.+.+.+..++.|++.+...+...+++.|..|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~ 473 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQI 473 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 011245566777888999999999999999999999998 999999999999999999999999987743 23
Q ss_pred --------hHHHHHHHHHHHHHHHHHHhcCcc
Q 008106 217 --------QWGFGISTATILLSIPIFLLGSPF 240 (577)
Q Consensus 217 --------~~~f~~~~~~~~~~~~~~~~~~~~ 240 (577)
+..|++.++..+++.+++++..++
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 474 VQTGMSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233666655555555554444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.39 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.33 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.4e-26 Score=241.17 Aligned_cols=159 Identities=10% Similarity=0.046 Sum_probs=135.2
Q ss_pred HHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 008106 51 SNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVL 130 (577)
Q Consensus 51 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 130 (577)
+.+.++++ ++|+|.+|.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++......
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------- 114 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------- 114 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh--------
Confidence 45556776 6899999999999999999999999999999997 9999999999999999998887643221
Q ss_pred ccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHHHHHHhhhhHHHHHHHHHh
Q 008106 131 EDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWI 210 (577)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lG~~igp~~~~~l 210 (577)
+.+.+++.|++.|++.|...+...++++|++|+++ |++.+++.+.+.++|..++|.+.+.+
T Consensus 115 -------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 115 -------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp -------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence 45679999999999999999999999999999998 99999999999999999999988877
Q ss_pred ccc-cchhHHHHHHHHHHHHHHHHHHhcC
Q 008106 211 EDN-KGWQWGFGISTATILLSIPIFLLGS 238 (577)
Q Consensus 211 ~~~-~gw~~~f~~~~~~~~~~~~~~~~~~ 238 (577)
... .+|++.|++.++..++..++.++..
T Consensus 176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 176 MAWFNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence 665 4799999887776655544444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.9e-23 Score=212.06 Aligned_cols=399 Identities=9% Similarity=-0.014 Sum_probs=232.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.|.+|.+.+..++..+.+....+.++.|+++++|+|+.+.|++.+.+.++..+++++.|+++||+ ||||.++++..+..
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 35689999999999999888889999999999999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
++..+..+..+.+. .....+..+.+.+.+.+...........+..+++. .++...
T Consensus 85 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPL---------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp HTHHHHHHHTHHHH---------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCC
T ss_pred HHHHHHHHhhhhhh---------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHH
Confidence 88888776542110 11122333334333433333333333333333221 125566
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhhccC
Q 008106 189 FNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKS 268 (577)
Q Consensus 189 ~~~~~~~~~lG~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (577)
.+........+..++|.+++++.+. +|+..+........+.....++..++.+..++++++. +
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 202 (417)
T d1pv7a_ 140 FGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV-------------G--- 202 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH-------------H---
T ss_pred HHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh-------------h---
Confidence 6677778888999999999988775 4555555444444333333333332221111110000 0
Q ss_pred CCCCCcccccccCCCCCCCCccCCCCCccCCCCCCCCCchhHHHHHHhhcCCCCCccccchhhhhHHHHHHhHHHHHHHh
Q 008106 269 KNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMST 348 (577)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (577)
+ . . +...... ..+. ...++............
T Consensus 203 ------------------~-----------~--~-~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 203 ------------------A-----------N--H-SAFSLKL-ALEL----------------FRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp ------------------S-----------C--C-CCCCHHH-HHHH----------------TTSSHHHHHHHHHHHHH
T ss_pred ------------------h-----------h--c-ccccccc-cccc----------------cccccccchhhhhHHHH
Confidence 0 0 0 0000000 0000 00000000011111111
Q ss_pred HHHHhhhhccchhHHhhhhhccccCCccccCCCCCCCcChhhhHHHhhhhhhhhhhcccccccccCCCChhHHHHHHHHH
Q 008106 349 IMLNCCLAQLSTFSVQQAATMNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLIL 428 (577)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l 428 (577)
......... ...+.. ......+..............+...++..+.+++ .+| .++++.+..+..+
T Consensus 234 ~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r-------~~~~~~~~~~~~~ 298 (417)
T d1pv7a_ 234 CTYDVFDQQ-FANFFT---SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI----INR-------IGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHH-HHHHHT---TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHH-------HCHHHHHHHHHHH
T ss_pred HHHHhhhcc-cccccc---ccccccccchhhhcccccccccccccchhhhhhh----hcc-------cccccchhhhHHH
Confidence 111111100 000000 0000000000000011111222233333333333 333 2334446667776
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcceehhHHHHHHHHHHHHHHHHHhhhHHHhhccCCchhHHHHHHHH-HHH
Q 008106 429 SIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLS-WAS 507 (577)
Q Consensus 429 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~-~~~ 507 (577)
..++.+..... .+.+.++...++.+++.+...+...++..+.+|++.|+++.|+. ++.
T Consensus 299 ~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (417)
T d1pv7a_ 299 MSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF 357 (417)
T ss_dssp HHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTT
T ss_pred HHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH
Confidence 76666655542 35666777888999999999999999999999999999999985 466
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008106 508 LAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKY 572 (577)
Q Consensus 508 ~~lg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~l~~v~~~~~~~~~~~ 572 (577)
..+|..+++.+.+.+.+. .+++..|++.++++++..++.++..++.+.
T Consensus 358 ~~~g~~i~~~~~G~l~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 358 KQLAMIFMSVLAGNMYES-----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 779999999999888731 345678889999998888888887776543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1e-12 Score=135.99 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=141.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH
Q 008106 29 MLAACFVLAVEVLENLAYLANASNLVLYLSKFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEF 108 (577)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~ 108 (577)
.+.++.+....++.....+++..+.+.|+.+.++.+..+.+.......+...++.+++|+++||+ +|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 45678888888899999999999999999999999999999999999999999999999999997 88765554444433
Q ss_pred HHHHHHHHHhhccCCCCCCcccccCCCccCCCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhh
Q 008106 109 MGLLLLTVQAHTRSLKPPTCVLEDGIASCREDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAF 188 (577)
Q Consensus 109 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 188 (577)
+.......... ....+.+...+..++.|++.++..+....+..|.+|++. |+++
T Consensus 327 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 380 (447)
T d1pw4a_ 327 LVTIATIVYWM--------------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 380 (447)
T ss_dssp HHHHHHHHTTS--------------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHHh--------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 33333322211 011145666677777888888888888999999999988 9999
Q ss_pred HHHHHHHHhh-hhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q 008106 189 FNYYVFCLSC-GALIAVTFVVWIEDNKGWQWGFGISTATILLSIPIFL 235 (577)
Q Consensus 189 ~~~~~~~~~l-G~~igp~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 235 (577)
.++.+...++ |..++|.+.|++.+.+||+..|++.++..+++.++..
T Consensus 381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 9998888777 5667899999999999999999877666555544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=5.4e-13 Score=135.24 Aligned_cols=147 Identities=7% Similarity=-0.022 Sum_probs=122.4
Q ss_pred hhcCCCchhhhhHHHHHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccccCCCccC
Q 008106 59 KFMHFSPSSSANIVTNFMGTAFLLALFGGFLADAFFTTYRIYVISAAIEFMGLLLLTVQAHTRSLKPPTCVLEDGIASCR 138 (577)
Q Consensus 59 ~~lg~s~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (577)
+..+.+....+.......++..++..+.|++.||+ |||+.+.++.++.+++.++..+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 310 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------- 310 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc--------------------
Confidence 34444555667777778888889999999999997 999999999999988888887754
Q ss_pred CCCCchHHHHHHHHHHHHhhcccccccchhhhcccCCcccchhhhchhhhHHHH-HHHHhhhhHHHHHHHHHhccccchh
Q 008106 139 EDEGGKAVMLFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYY-VFCLSCGALIAVTFVVWIEDNKGWQ 217 (577)
Q Consensus 139 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lG~~igp~~~~~l~~~~gw~ 217 (577)
+.+.+++..++.|++.+...+...+++.|.+|++. |++.++.. .....+|..++|.+.|++.+..||+
T Consensus 311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 56777888888999999999999999999999998 99999975 4567799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008106 218 WGFGISTATILLSIPIFLLG 237 (577)
Q Consensus 218 ~~f~~~~~~~~~~~~~~~~~ 237 (577)
..|++.+++.++..++..+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99998877766555544443
|