Citrus Sinensis ID: 008134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLET
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHHccccccccEEEEEccccccccccccccccccEEEEHHHHHHHcHHccccccccccccEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccEEEEccHHHHcccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEccccccHHccccccccHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHEEHHccccHHHHHHHHHHHHHHHHHHHHccHcccHHHHccEEccccccccccEEccccccccccccccccHHHHHHHHHHHHcccccccccEEEEcccccccccccEEEEcccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEHHHHccHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccEEEEEHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHccHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHccccEEEccccccccccEEEEcccccccccccccccccEEEEEEccccccccccccccccEEEEccccccEcccccHHHHHHHHcHcccccEEEcccccEEccccccc
Coil and Loop (DISEMBL)
mgdfagssfdselltekgsgiYGIVGAAIVALLIPVLLSMMVARKKKvkqrgvpvevggepgyairnaqipelvevpwkGASTMAALFEQsckshpqdrflgkrkllgkdfvtasdgrkfeklhlgdyewQTYGEVFDRACSFAsglvnfghnVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYfendgsekdsgvsggisnwTVSSFSEVeklgkrspvdpslpsqngVAVIMYTsgstglpkgvmithGNIVATAAAIKtlipnpgrsdvylAYLPLAHVLELAAESIMLCAGCAigygstltmtdtsskikkgtkgdvsvlkptlmaAVPAIFDRVREGVVKKVeekggltknlfNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIrfmicggaplsadSQRFINICmgapigqaygltetcagstfsewddpsvgrvgppvpccyiklvswdeggyktsdkpmprgeivvggfnvtagyfnnpgktseVYKVNFHCVWMLCICLYVscdktlet
Flexible Loop (DISEMBL)
mgdfagssfDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKkkvkqrgvpvevggepgyairnaQIPELVEVPWKGASTMAALFEQSCkshpqdrflgkrklLGKDFvtasdgrkfeklHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFendgsekdsgvsggisNWTVSSFSEVEKlgkrspvdpslpsqNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMtdtsskikkgtkgdvsvlkptlMAAVPAIFDRVREGVVKkveekggltknlfnigykrRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGyktsdkpmprgEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLET
Low Complexity Region (SEG)
MGDFAGSSFDSELLTEKGSGIYgivgaaivallipvllSMMVARKKKVKQRgvpvevggepgYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDskqlkklsavssslkTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRegvvkkveekggLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLET
Disordered region (IsUnstruct)
***************EKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE****************W*************************GVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDT***I**GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD*PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCD*****
Disordered Region (DISOPRED)
***********ELLTEKGSGIYGIVGAAIVALLIPVLLSMM**************************AQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS*****LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL**
Disordered Region (DISEMBL)
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARK********PVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE************SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLET
Disordered Region (DISPRO)
********FDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV*GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDFAGSSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
Q9SJD4	720	Long chain acyl-CoA synth	yes	no	0.885	0.708	0.731	0.0
Q9CAP8	691	Long chain acyl-CoA synth	no	no	0.899	0.749	0.629	0.0
O95573	720	Long-chain-fatty-acid--Co	yes	no	0.885	0.708	0.419	1e-115
O60488	711	Long-chain-fatty-acid--Co	no	no	0.892	0.722	0.419	1e-115
Q63151	720	Long-chain-fatty-acid--Co	yes	no	0.892	0.713	0.426	1e-115
Q9CZW4	720	Long-chain-fatty-acid--Co	yes	no	0.892	0.713	0.424	1e-115
O35547	670	Long-chain-fatty-acid--Co	no	no	0.842	0.723	0.437	1e-115
Q9QUJ7	711	Long-chain-fatty-acid--Co	no	no	0.892	0.722	0.423	1e-114
Q5R668	720	Long-chain-fatty-acid--Co	no	no	0.895	0.716	0.425	1e-114
O60135	676	Long-chain-fatty-acid--Co	yes	no	0.815	0.695	0.333	1e-69

>sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/510 (73%), Positives = 443/510 (86%)

Query: 46  KKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRK 105
           KK K+RGVP++VGGE GY +R+A+ PELV+VPW+GA+TM ALFEQSCK + +DR LG R+
Sbjct: 45  KKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTRE 104

Query: 106 LLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC 165
            + K+F+TASDGRKFEKLHLG+Y+WQ+YGEVF+R C+FASGLVN GHNVD R AI ++T 
Sbjct: 105 FIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDTR 164

Query: 166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT 225
            EWFIAFQGCFRQSITVVTIY+SLGE+ALI+SLNET+V+TLICDSKQLKKLSA+ SSLKT
Sbjct: 165 AEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLKT 224

Query: 226 IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG 285
           +KN+IY E DG +  S     + + TVSS SEVEKLG+++ V P LPS+NGVAVIM+TSG
Sbjct: 225 VKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTSG 284

Query: 286 STGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
           STGLPKGVMITHGN+VATAA +  ++P   ++D Y+AYLPLAHV EL AE ++  +G AI
Sbjct: 285 STGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSAI 344

Query: 346 GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF 405
           GYGS +T+TDTS+K+KKGTKGDVS LKPT+M AVPAI DRVREGV+KKVEEKGG+ K LF
Sbjct: 345 GYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTLF 404

Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
           +  YKRRLAAV+GSWFGAWGLE+MLWDA+VFK +RAVLGG IRFM+ GGAPLS DSQRFI
Sbjct: 405 DFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRFI 464

Query: 466 NICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM 525
           NICMG+PIGQ YGLTETCAG+TFSEWDDP+VGRVGPP+PC Y+KLVSW+EGGY+ SDKPM
Sbjct: 465 NICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKPM 524

Query: 526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           PRGEIVVGG +VTAGYFNN  KT EVYKV+
Sbjct: 525 PRGEIVVGGNSVTAGYFNNQEKTDEVYKVD 554

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/524 (62%), Positives = 416/524 (79%), Gaps = 6/524 (1%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQS 91
           +++P+ L+ +V + KK K+RGV V+VGGEPGYAIRN +  E V   W+  ST+  LFE S
Sbjct: 8   VIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEIS 67

Query: 92  CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFG 151
           C +H    FLG RKL+ ++  T+ DG+ FEKLHLGDYEW T+G+  +  C FASGLV  G
Sbjct: 68  CNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIG 127

Query: 152 HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK 211
           H  + R AI A+T  EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC SK
Sbjct: 128 HKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSK 187

Query: 212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSL 271
           +LKKL  +S  L+T+K VI  ++   E  S V+   SNW  +SF++V+KLG+ +PVDP+ 
Sbjct: 188 ELKKLMDISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNF 241

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE 331
           P    VAVIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LE
Sbjct: 242 PLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILE 301

Query: 332 LAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
           LAAES+M   G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR+GV 
Sbjct: 302 LAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVR 361

Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
           KKV+ KGGL+K LF+  Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++
Sbjct: 362 KKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLL 421

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
            GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV
Sbjct: 422 SGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLV 481

Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
            W EGGY TSDKPMPRGEIV+GG N+T GYF N  KT EVYKV+
Sbjct: 482 DWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVD 525

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/539 (41%), Positives = 317/539 (58%), Gaps = 29/539 (5%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ ++    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
            +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT-------V 252
           T+VT +I   + L+ KL  + S +  ++++I            V G    W+       V
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHII-----------TVDGKPPTWSEFPKGIIV 253

Query: 253 SSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
            + + VE LG ++ ++    S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +  
Sbjct: 254 HTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAE 313

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
            IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD S
Sbjct: 314 RIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTS 373

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
           +LKPTLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    
Sbjct: 374 MLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTP 427

Query: 430 LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS 489
           L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T S
Sbjct: 428 LCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTIS 487

Query: 490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
           E  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG +VT GY+ N  KT
Sbjct: 488 EVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKT 546

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/529 (41%), Positives = 309/529 (58%), Gaps = 15/529 (2%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
           + IP        +K  + +R        +PG   R+      L  +   GA T+  LF+ 
Sbjct: 26  IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85

Query: 91  SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
           +     +   LG R++L ++     +G+ F+KL LG+Y+W  Y EV  R  +F SGL   
Sbjct: 86  AVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTAL 145

Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
           G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++A++H LNE++ + LI   
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSV 205

Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
           + L+ KL      +  +K++IY +N    K     G    + + S   VE+LG       
Sbjct: 206 ELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FEIHSMQSVEELGSNPENLG 261

Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
           + PS P+ + +A++MYTSGSTG PKGVM+ H N++A        IP  G  D Y+ YLPL
Sbjct: 262 IPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321

Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
           AHVLEL AE      GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381

Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
            + V+ KV+E   + K LF IGY  +L  ++       G +  L + ++FK V+A+LGG 
Sbjct: 382 YKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLFKKVKALLGGN 435

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
           +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T +E  D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495

Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
            IKL  W EGGY  +DKP PRGEIV+GG N++ GYF N  KT+E Y V+
Sbjct: 496 EIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSVD 544

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/535 (42%), Positives = 314/535 (58%), Gaps = 21/535 (3%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ I+    +   IP        ++K    +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFIISLYTILTYIPFYFLCESKQEKPNHIKAKPVSSKPDSAYRSVNS-MDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
             F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
           T+VT +I   + L+ KL  + S +  ++++I  +      SE   GV        V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257

Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            V+ LG ++ VD    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +   IP 
Sbjct: 258 AVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
            G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           TLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    L D 
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
            VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T +E  D
Sbjct: 432 FVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
            + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  KT
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKT 546

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/535 (42%), Positives = 315/535 (58%), Gaps = 21/535 (3%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ I+    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFIISLYTILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRSINS-VDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
             F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H LNE
Sbjct: 145 LDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDG---SEKDSGVSGGISNWTVSSFS 256
           T+VT +I   + L+ KL  + S +  ++++I  +      SE   GV        V + +
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGV-------IVHTMA 257

Query: 257 EVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            V+ LG ++ V+    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +   IP 
Sbjct: 258 AVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPR 317

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
            G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD SVLKP
Sbjct: 318 LGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKP 377

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           TLMAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    L D 
Sbjct: 378 TLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI------SKGCSTPLCDR 431

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
            VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T +E  D
Sbjct: 432 FVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWD 491

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
            + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  KT
Sbjct: 492 YNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKT 546

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/501 (43%), Positives = 305/501 (60%), Gaps = 16/501 (3%)

Query: 59  GEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGR 118
           G P  ++ +     ++++P  GA T+  LF+ +     +   LG R++L ++     +G+
Sbjct: 15  GSPYRSVTHFDSLAVIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72

Query: 119 KFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
            F+KL LG+Y+W  Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ 
Sbjct: 73  VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132

Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGS 237
           +  +VT+Y++LG++A++H LNE++ + LI   + L+ KL A    +  +K++IY +N   
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTI 192

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
            +     G      + S   VE+LG +   S + PS P+ + +A++MYTSGSTG PKGVM
Sbjct: 193 NRAEYPEG----LEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVM 248

Query: 295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT 354
           + H N++A        IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++
Sbjct: 249 MHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLS 308

Query: 355 DTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           D SSKIKKG+KGD +VLKPTLMAAVP I DR+ + V+ KV+E   + K LF IGY  +L 
Sbjct: 309 DQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLE 368

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
            ++       G +  L + I+FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIG
Sbjct: 369 QIKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIG 422

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG 534
           Q YGLTE+C   T +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG
Sbjct: 423 QGYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGG 482

Query: 535 FNVTAGYFNNPGKTSEVYKVN 555
            N++ GYF N  KT+E Y V+
Sbjct: 483 QNISMGYFKNEEKTAEDYSVD 503

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/529 (42%), Positives = 308/529 (58%), Gaps = 15/529 (2%)

Query: 32  LLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRN-AQIPELVEVPWKGASTMAALFEQ 90
           + IP        +K  + +R        +PG   R+      L  +   GA T+  LF+ 
Sbjct: 26  IFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDH 85

Query: 91  SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF 150
           +     +   LG R++L ++     +G+ F+KL LG+Y+W  Y EV  R  +F SGL   
Sbjct: 86  AVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGSGLTAL 145

Query: 151 GHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS 210
           G       AI  ET  EW IA Q CF+ +  +VT+Y++LG +A++H LNE++ + LI   
Sbjct: 146 GLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSV 205

Query: 211 KQLK-KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--- 266
           + L+ KL A    +  +K++IY +N    +     G      + S   VE+LG +     
Sbjct: 206 ELLESKLKAALVDINCVKHIIYVDNKTINRAEYPEG----LEIHSMQSVEELGAKPENLS 261

Query: 267 VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
           V PS P+ + +A++MYTSGSTG PKGVM+ H N++A        IP  G  D Y+ YLPL
Sbjct: 262 VPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPL 321

Query: 327 AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
           AHVLEL AE      GC IGY S LT++D SSKIKKG+KGD +VLKPTLMAAVP I DR+
Sbjct: 322 AHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRI 381

Query: 387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGR 446
            + V+ KV+E   + K LF IGY  +L  ++       G +  L + I+FK V+A+LGG 
Sbjct: 382 YKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFKKVKALLGGN 435

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC 506
           +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T +E  D + GRVG P+ CC
Sbjct: 436 VRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGAPLICC 495

Query: 507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
            IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT+E Y V+
Sbjct: 496 EIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVD 544

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2

 Score =  413 bits (1061), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/533 (42%), Positives = 317/533 (59%), Gaps = 17/533 (3%)

Query: 21  IYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG 80
           I+ ++    +   IP        ++K  + +  PV    +  Y   N+ +  L  V + G
Sbjct: 26  IHFLISLYTILTYIPFYFFSESRQEKSNRIKAKPVNSKPDSAYRSVNS-LDGLASVLYPG 84

Query: 81  ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRA 140
             T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +Y +VF RA
Sbjct: 85  CDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRA 144

Query: 141 CSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNE 200
            +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  A++H+LNE
Sbjct: 145 FNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNE 204

Query: 201 TQVTTLICDSKQLK-KLSAVSSSLKTIKNVIYFENDGSEKD-SGVSGGISNWTVSSFSEV 258
           T+VT +I   + L+ KL  + S +  ++++I    DG     S    GI    V + + V
Sbjct: 205 TEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGI---IVHTMAAV 259

Query: 259 EKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG 315
           E LG ++ ++    S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +   IP  G
Sbjct: 260 EALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELG 319

Query: 316 RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTL 375
             DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD S+LKPTL
Sbjct: 320 EEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTL 379

Query: 376 MAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIV 435
           MAAVP I DR+ + V+ KV E     +NLF + Y  ++  +      + G    L ++ V
Sbjct: 380 MAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQI------SKGRNTPLCNSFV 433

Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
           F+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T SE  D +
Sbjct: 434 FRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYN 493

Query: 496 VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
            GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG  VT GY+ N  KT
Sbjct: 494 TGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKT 546

Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O60135|LCF1_SCHPO Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcf1 PE=3 SV=1

 Score =  264 bits (675), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/506 (33%), Positives = 262/506 (51%), Gaps = 36/506 (7%)

Query: 66  RNAQIPE-LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVT-----ASDGRK 119
           RNA  P+ LVE       T+  +F  S K     + +G R L+ +   T       DG K
Sbjct: 20  RNANFPDHLVETYSDDVHTLFDVFRHSVKQFGNKKAMGYRNLVKEHVETKMVTKVVDGEK 79

Query: 120 FE------KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ 173
            E         L DY + ++ +++D+A  +A  L   G N   +  + A T   W +  +
Sbjct: 80  KEVPKSWSYFELSDYNYLSFNDIYDKALRYAGALRKLGLNKGDKFELYAPTSAFWLLTAE 139

Query: 174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE 233
            C  QS+T+VT Y +LGE+ L+HSL E+ V  +  +   LK L      +++++ +IY  
Sbjct: 140 ACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIY-R 198

Query: 234 NDGSEKDSGVSGGIS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKG 292
           ND  E+D      I  N  +  F++ EK+          PS   +  IMYTSGSTGLPKG
Sbjct: 199 NDAKEEDIKTIQEIRPNLKLIKFADFEKMSPPVEP--DPPSPEEICCIMYTSGSTGLPKG 256

Query: 293 VMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
           V+++H N+VA   AI   +P     D  LAYLPLAH+LE A E+I L  G  IGY +  T
Sbjct: 257 VILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPLAHILEFAFENICLAWGGTIGYANVRT 316

Query: 353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR 412
           + DT+    +  KGD++  +PT+M  VPA+++ VR+G++ K+     + +++F   Y  +
Sbjct: 317 LVDTNC---RNCKGDINTFRPTIMVGVPAVWEMVRKGIMSKLNAASAVKRSVFWTAYYTK 373

Query: 413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAV-LGGRIRFMICGGAPLSADSQRFINICMGA 471
              +  +  G+  L     D  VF  +R++  GGR+R+ + GG+ LS D++RF++I +  
Sbjct: 374 AKLMRHNLPGSCVL-----DTAVFNKIRSMGTGGRLRYTLSGGSALSPDTKRFLSIVL-C 427

Query: 472 PIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
           P+   YGLTE  A +          DD +    G  +PC  +KLV  +EG Y +   P P
Sbjct: 428 PMLIGYGLTEISAAAMVQNPACFNLDDSA----GSLLPCTEMKLVDCEEGNYNSHGHP-P 482

Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEVY 552
           RGEI + G ++T GY N   +  E +
Sbjct: 483 RGEIWLRGPSLTRGYLNRDKENKESF 508

Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids. It may supplement intracellular myristoyl-CoA pools from exogenous myristate. Preferentially acts on C12:0-C16:0 fatty acids with myristic and pentadecanic acid (C15:0) having the highest activities (By similarity). Appears to play a role in the maintenance of cell viability during stationary phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
255582880	730	long-chain-fatty-acid CoA ligase, putati	0.937	0.739	0.760	0.0
193290712	726	putative long-chain acyl-CoA synthetase	0.930	0.738	0.732	0.0
225447498	719	PREDICTED: long chain acyl-CoA synthetas	0.901	0.721	0.737	0.0
356577566	725	PREDICTED: long chain acyl-CoA synthetas	0.942	0.748	0.719	0.0
224131896	679	predicted protein [Populus trichocarpa]	0.887	0.752	0.761	0.0
356547579	725	PREDICTED: long chain acyl-CoA synthetas	0.942	0.748	0.715	0.0
449453754	732	PREDICTED: long chain acyl-CoA synthetas	0.937	0.737	0.709	0.0
449511787	732	PREDICTED: long chain acyl-CoA synthetas	0.937	0.737	0.709	0.0
357462487	727	Annotation was added to scaffolds in Nov	0.935	0.741	0.712	0.0
317373793	711	long-chain acyl-CoA synthetase 2 [Helian	0.920	0.745	0.704	0.0

>gi|255582880|ref|XP_002532212.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223528108|gb|EEF30181.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis]

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/547 (76%), Positives = 478/547 (87%), Gaps = 7/547 (1%)

Query: 12  ELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQ-RGVPVEVGGEPGYAIRNAQI 70
           +L  EKG G YGI+GAAIVA+ +PVLLS++   +KKVK+ RGVPVEVGGE GYAIRNA+ 
Sbjct: 22  QLSVEKGYGTYGILGAAIVAIFLPVLLSIVFLGRKKVKKVRGVPVEVGGEAGYAIRNART 81

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDG--RKFEKLHLGDY 128
           P L+EVPW+GA+TMAALFEQSCK H Q RFLG RKL+ ++F+TASDG  RKFEKLHLGDY
Sbjct: 82  PGLIEVPWEGATTMAALFEQSCKKHSQYRFLGTRKLVSREFITASDGSGRKFEKLHLGDY 141

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           EWQTYG+VFDRAC+FASGL+   HN D RAAI +ET  EW IA QGC RQ+I+VVTIYSS
Sbjct: 142 EWQTYGQVFDRACNFASGLIRLEHNEDARAAIFSETREEWLIALQGCMRQNISVVTIYSS 201

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
           LG+DAL+HSLNET+V TLICDSKQLKKL+A+SS L TIKNVIYFE++GS     +   +S
Sbjct: 202 LGDDALVHSLNETEVQTLICDSKQLKKLAAISSRLTTIKNVIYFEDEGS----AMPQSMS 257

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
           NWTVSSF EVEK+GK +P+ PSLPS++G+AVIMYTSGSTGLPKGVMITHGNI+AT AA+ 
Sbjct: 258 NWTVSSFPEVEKMGKTNPLLPSLPSKDGIAVIMYTSGSTGLPKGVMITHGNIIATIAAVM 317

Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
           T IP  G +DVYLAYLPLAHVLELAAES+ML AGCAIGYGS LT+TDT++KIKKGTKGD 
Sbjct: 318 TTIPKLGTNDVYLAYLPLAHVLELAAESVMLTAGCAIGYGSALTLTDTANKIKKGTKGDA 377

Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
           S+LKPTLMAAVP I DRVREGV KKV+EKGGL K LF+IGYKRR AA+EGSWFGAWGLER
Sbjct: 378 SMLKPTLMAAVPTILDRVREGVQKKVDEKGGLAKKLFDIGYKRRQAAIEGSWFGAWGLER 437

Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
           +LWDAIVF+++RA LGG IRFM+CGGAPLS DSQRFINICMGA IGQAYGLTETCAG+ F
Sbjct: 438 VLWDAIVFRTIRAGLGGHIRFMLCGGAPLSGDSQRFINICMGAIIGQAYGLTETCAGAAF 497

Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
           S+WDD SVGRVGPPVPCCYIKLVSW+EGGY+ SDKPMPRGEIVVGGF+VT+GYF +  KT
Sbjct: 498 SDWDDTSVGRVGPPVPCCYIKLVSWEEGGYRISDKPMPRGEIVVGGFSVTSGYFKSHEKT 557

Query: 549 SEVYKVN 555
           +EVYKV+
Sbjct: 558 NEVYKVD 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290712|gb|ACF17664.1| putative long-chain acyl-CoA synthetase [Capsicum annuum]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/539 (73%), Positives = 463/539 (85%), Gaps = 3/539 (0%)

Query: 17  KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
           K  G  G+ GA  +A+++P++LSM++  KKK KQRGVPV+VGGE G A+RN +   LVEV
Sbjct: 25  KNYGSSGVTGAVFIAIIMPIILSMLLMGKKKAKQRGVPVQVGGEAGLAMRNVKSARLVEV 84

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           PW+GA+T+ ALFEQSCK H  DR LG RKL+ +DFVTASDGRKFEKLHLG+Y+W++YG+V
Sbjct: 85  PWEGATTVPALFEQSCKKHSSDRCLGTRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQV 144

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           FDR C+FASGL+ FGH+VDT AAI AET  EW IAFQGCFRQ+ITVVTIY+SLG+DALIH
Sbjct: 145 FDRTCNFASGLIKFGHDVDTHAAICAETRPEWIIAFQGCFRQNITVVTIYASLGDDALIH 204

Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
           SLNETQV+TLICD+KQLKK+++VSSSLKTIKNVIYFE+D +  DS     I +W +SSFS
Sbjct: 205 SLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETAIDST---NIDSWRMSSFS 261

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
            VEKLGK SP+ P LP +  +AVIMYTSGSTGLPKGVMITHGNIVAT+AA+ T+IPN G 
Sbjct: 262 AVEKLGKNSPIQPRLPIKEDIAVIMYTSGSTGLPKGVMITHGNIVATSAAVMTVIPNLGS 321

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
           SDVYLAYLPLAHV ELAAE++ML AG  IGYGS LT+TDTS+K+ KGTKGD +VLKPTLM
Sbjct: 322 SDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLM 381

Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
           AAVPAI DRVR+GV+KKVEEK G  K LF+IG+ RRLAA+EGSWFGAWGLE+ LWD I+F
Sbjct: 382 AAVPAILDRVRDGVMKKVEEKAGSAKKLFHIGFNRRLAAMEGSWFGAWGLEKQLWDIIIF 441

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
           K VRAVLGG IRFM+CGGAPLS D+QRFINICMGAPIGQ YGLTET AG+TFSEWDDPSV
Sbjct: 442 KKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGATFSEWDDPSV 501

Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           GRVGPP+PC YIKLV+W+EGGY+  DKPMPRGE+VVGG ++TAGYFNN  KT+EVYKV+
Sbjct: 502 GRVGPPLPCSYIKLVTWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEDKTNEVYKVD 560

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447498|ref|XP_002267417.1| PREDICTED: long chain acyl-CoA synthetase 8 [Vitis vinifera] gi|296085053|emb|CBI28468.3| unnamed protein product [Vitis vinifera]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/521 (73%), Positives = 457/521 (87%), Gaps = 2/521 (0%)

Query: 35  PVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKS 94
           P+L S+++  KKKVKQRGVPVEVG E G+A+RN++  ELVEVPW+GA+T+AALFEQSC  
Sbjct: 32  PLLFSIILVGKKKVKQRGVPVEVGDELGFAMRNSRYTELVEVPWEGATTIAALFEQSCGK 91

Query: 95  HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV 154
           H +D FLG RKL+ ++F+TA DGRKFEK+HLG+Y+W+TY E+F+RAC+FASGL+  GHNV
Sbjct: 92  HSRDPFLGTRKLINREFITAGDGRKFEKVHLGEYQWETYEEIFNRACNFASGLIKLGHNV 151

Query: 155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK 214
           D+  AI ++T  EW IAFQGCFRQ+IT+VTIY+SLGEDALIHSLNETQ++TLICDSKQLK
Sbjct: 152 DSHVAIFSDTQAEWLIAFQGCFRQNITIVTIYASLGEDALIHSLNETQISTLICDSKQLK 211

Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
           KL+++SS L+ IKNVIYF+N  S  DS  SG +SNWTVS+FSEVEKLGK +PV P LPS+
Sbjct: 212 KLASISSRLEMIKNVIYFDNAAS--DSDFSGDMSNWTVSTFSEVEKLGKENPVHPRLPSK 269

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
             +AV+MYTSGSTGLPKGVM+THGNIVATAAA+ T+IP  G  D+YLAYLPLAHV ELAA
Sbjct: 270 TDIAVVMYTSGSTGLPKGVMMTHGNIVATAAAVMTVIPELGSKDIYLAYLPLAHVFELAA 329

Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
           E++M+ AGCAIGYGS LT+TDTS+KI+KGTKGD S+LKPTLMA VPAI DRVR+GV+K+V
Sbjct: 330 ETVMMAAGCAIGYGSALTLTDTSNKIQKGTKGDASMLKPTLMATVPAILDRVRDGVLKQV 389

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
           E KGGL K LFNIGYKRRLAAVEGS FGAWGLER+ WDAIVFK +R++LGG IRFM+CGG
Sbjct: 390 EAKGGLVKKLFNIGYKRRLAAVEGSCFGAWGLERVFWDAIVFKKIRSLLGGHIRFMLCGG 449

Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
           APLS D+QRFINICMGAPIGQ YGLTETCAG+TF+E DDP+VG VGPP+PC YIKLVSW+
Sbjct: 450 APLSGDTQRFINICMGAPIGQGYGLTETCAGATFTEPDDPNVGHVGPPLPCAYIKLVSWE 509

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           EGGYKTSDKPMPRGE+VVGG+++TAGYFNN  KT E YKV+
Sbjct: 510 EGGYKTSDKPMPRGEVVVGGYSITAGYFNNEEKTKEAYKVD 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577566|ref|XP_003556895.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/545 (71%), Positives = 460/545 (84%), Gaps = 2/545 (0%)

Query: 11  SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
           S++   K  G YG + A ++++L+PVL S +   KKK K RGVPVEVGGE  +A+RNA+ 
Sbjct: 17  SDIFGWKDHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
            ELVEVPWKGA TMA LFEQSC  +  +RFLG RKL+ K+ VT+SDGRKFEKLHLGDYEW
Sbjct: 77  TELVEVPWKGAPTMAHLFEQSCNKYTCNRFLGTRKLIQKELVTSSDGRKFEKLHLGDYEW 136

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +TYGEVF R  +FASGL+  GHN D+R AI ++T  EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNEDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
           EDALIHSLNET+V+TLICDSKQLKKL A+ S L +++N+IYFE+D  E     SG  S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQLKKLDAIRSRLISLQNIIYFEDDNEE--DAFSGSSSGW 254

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
           IPN G  DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+  YKRRLAAV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLAAVKGSWLGAWGLEKLM 434

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
           WD IVFK +R+ LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRSALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
           WDD SVGRVGPP+PCCYIKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N  KT+E
Sbjct: 495 WDDYSVGRVGPPLPCCYIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTNE 554

Query: 551 VYKVN 555
           V+KV+
Sbjct: 555 VFKVD 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131896|ref|XP_002321205.1| predicted protein [Populus trichocarpa] gi|222861978|gb|EEE99520.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/511 (76%), Positives = 443/511 (86%)

Query: 45  KKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKR 104
           KKKVKQRGVPVEVGGE GYA+RNA+  ELVEVPWKGA+TMAALFEQSC+ H  +RFLG R
Sbjct: 3   KKKVKQRGVPVEVGGEAGYAVRNARHAELVEVPWKGATTMAALFEQSCRKHSPERFLGTR 62

Query: 105 KLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET 164
           KL+ K+FVTASDGRKFEKLHLGDYEWQTYG+VFDR C+FASGL+  GHN D RAAI A+T
Sbjct: 63  KLISKEFVTASDGRKFEKLHLGDYEWQTYGQVFDRVCNFASGLIMLGHNEDARAAIFADT 122

Query: 165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK 224
             EW IAFQGCFRQ+ITVVT+Y+SLG DALIHSLNETQV+TLICD KQLK L+A+SS + 
Sbjct: 123 RAEWLIAFQGCFRQNITVVTMYASLGVDALIHSLNETQVSTLICDPKQLKTLAAISSKIT 182

Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
           TIKNVIYFE+  +  D G+S   S W VSSFSEVE+LGK S V PSLP++NG+AV+MYTS
Sbjct: 183 TIKNVIYFEDGETTNDLGLSASTSYWKVSSFSEVEELGKNSHVPPSLPTKNGIAVVMYTS 242

Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCA 344
           GSTG PKGVMITHGNIVATAAA+ T+IP    +DVYLAYLPLAHV ELAAES+ML  GCA
Sbjct: 243 GSTGQPKGVMITHGNIVATAAAVMTVIPKLSSNDVYLAYLPLAHVFELAAESVMLSVGCA 302

Query: 345 IGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
           IGYGS LT+TDTS+KIKKGTKGD S+L PTLM AVPAI DRVR+GV+KKVEEKGGL K L
Sbjct: 303 IGYGSALTLTDTSNKIKKGTKGDASMLNPTLMLAVPAILDRVRDGVLKKVEEKGGLAKKL 362

Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
           FNIG KRR+AA+EGSWFG   LERMLWD I FK +RA+LG R++F++CGGAPLS DSQRF
Sbjct: 363 FNIGCKRRMAAIEGSWFGTSALERMLWDVIAFKQIRAILGVRMQFILCGGAPLSGDSQRF 422

Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
            NICMGA IGQAYGLTETCAG+ ++EWDDPSVGRVGPP+PCCY+KLVSW+EGGY  +DKP
Sbjct: 423 TNICMGAIIGQAYGLTETCAGAAYTEWDDPSVGRVGPPLPCCYVKLVSWEEGGYTVADKP 482

Query: 525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           MPRGE+VVGGF+VTAGYFN   KT+EVYKV+
Sbjct: 483 MPRGEVVVGGFSVTAGYFNYQEKTNEVYKVD 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547579|ref|XP_003542188.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Glycine max]

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/545 (71%), Positives = 459/545 (84%), Gaps = 2/545 (0%)

Query: 11  SELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQI 70
           S++   KG G YG + A ++++L+PVL S +   KKK K RGVPVEVGGE  +A+RNA+ 
Sbjct: 17  SDIFGWKGHGEYGALAAIVISILVPVLFSALFFGKKKGKIRGVPVEVGGEECFAVRNARK 76

Query: 71  PELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEW 130
            ELVEVPWKGA TMA LFEQSC  + +++FLG RK++ K+FVT+SDGRKFEKLHLGDYEW
Sbjct: 77  TELVEVPWKGAPTMAHLFEQSCNKYTRNQFLGTRKIIQKEFVTSSDGRKFEKLHLGDYEW 136

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +TYGEVF R  +FASGL+  GHN D+R AI ++T  EW IA QGCFRQ++TVVTIY+SLG
Sbjct: 137 ETYGEVFARVSNFASGLLKLGHNGDSRVAIFSDTRAEWLIALQGCFRQNVTVVTIYASLG 196

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
           EDALIHSLNET+V+TLICDSKQ KKL A+ S L +++NVIYFE+D  E     SG  S W
Sbjct: 197 EDALIHSLNETEVSTLICDSKQSKKLDAIRSRLTSLQNVIYFEDDNEE--DAFSGSSSGW 254

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           T++SFSEVEKLGK SPV+PSLPS+N +AVIMYTSGSTGLPKGVMITHGNIVAT AA+ T+
Sbjct: 255 TIASFSEVEKLGKESPVEPSLPSKNAIAVIMYTSGSTGLPKGVMITHGNIVATTAAVMTV 314

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
           IPN G  DVYLAYLPLAHV E+AAES+ML AGCAIGYGS LT+TDTS+K+KKGTKGD +V
Sbjct: 315 IPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGCAIGYGSPLTLTDTSNKVKKGTKGDATV 374

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           LKPTL+ AVPAI DR+R+GVVKKVE+KGGL KNLF+  YKRRL AV+GSW GAWGLE+++
Sbjct: 375 LKPTLLTAVPAILDRIRDGVVKKVEQKGGLVKNLFHFAYKRRLGAVKGSWLGAWGLEKLM 434

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
           WD IVFK +R  LGG++RFM+CGGAPLS DSQ FINICMGAPIGQ YGLTET AG+ FSE
Sbjct: 435 WDTIVFKQIRTALGGQLRFMLCGGAPLSGDSQHFINICMGAPIGQGYGLTETFAGAAFSE 494

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
           WDD SVGRVGPP+PCC+IKLVSW+EGGY TSDKPMPRGEIVVGGF+VTAGYF N  KT E
Sbjct: 495 WDDYSVGRVGPPLPCCHIKLVSWEEGGYLTSDKPMPRGEIVVGGFSVTAGYFKNQEKTKE 554

Query: 551 VYKVN 555
           V+KV+
Sbjct: 555 VFKVD 559

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453754|ref|XP_004144621.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/540 (70%), Positives = 460/540 (85%)

Query: 14  LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
           L  +G GI GIVG   + +LI +LL  +V  KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25  LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84

Query: 74  VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
            +VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85  SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
           GEVF+RAC+FASGLV  GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
           L+HSLNET+V+TLIC+SKQL+KL  +SSSL T++N+IYFE+ G E D   S   S W V 
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
           SFSEV KLG  +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP 
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
               DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+ 
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           ++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511787|ref|XP_004164053.1| PREDICTED: long chain acyl-CoA synthetase 8-like [Cucumis sativus]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/540 (70%), Positives = 460/540 (85%)

Query: 14  LTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPEL 73
           L  +G GI GIVG   + +LI +LL  +V  KK+ K+RG+PVEVGG+PGYA+RN ++ EL
Sbjct: 25  LVGRGYGIVGIVGTIFIGILIAILLRSVVLVKKRRKRRGIPVEVGGDPGYAMRNVRVTEL 84

Query: 74  VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTY 133
            +VPWKGA+TMAALFEQSC+ H Q++FLG RKL+ K+FVTASDGRKFEKL+LG+YEWQTY
Sbjct: 85  SQVPWKGATTMAALFEQSCRKHAQNKFLGTRKLISKEFVTASDGRKFEKLNLGEYEWQTY 144

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
           GEVF+RAC+FASGLV  GH+VD+R AI AETC EWFIAFQGC RQ ITVVTIY+SLGE+A
Sbjct: 145 GEVFERACNFASGLVGIGHDVDSRVAIYAETCAEWFIAFQGCIRQDITVVTIYASLGEEA 204

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVS 253
           L+HSLNET+V+TLIC+SKQL+KL  +SSSL T++N+IYFE+ G E D   S   S W V 
Sbjct: 205 LVHSLNETEVSTLICNSKQLRKLMEISSSLTTVENIIYFEDVGYEADFISSENTSKWKVI 264

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
           SFSEV KLG  +PV PSLPS + +AV+MYTSGSTGLPKGVMI+HGNIVATAA + T+IP 
Sbjct: 265 SFSEVIKLGTENPVVPSLPSSHSIAVVMYTSGSTGLPKGVMISHGNIVATAAGVMTVIPK 324

Query: 314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP 373
               DVYLAYLPLAHVLELAAE++++ AG A+GYGS LTMTDTSSKIKKGTKGDVSVLKP
Sbjct: 325 LDSDDVYLAYLPLAHVLELAAEAVIVSAGSAMGYGSPLTMTDTSSKIKKGTKGDVSVLKP 384

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T+M AVPAI DR+R+GV+KKVEEKGGL K LF+I Y R LAA+EGSW GAWGLER+ W+ 
Sbjct: 385 TIMTAVPAILDRIRDGVLKKVEEKGGLVKKLFHIAYNRELAALEGSWLGAWGLERLFWNV 444

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           ++F+++R+VLGGR+RFM+CGGAPLS +SQRF NICMG+ IGQ YGLTET AG+ FSEWDD
Sbjct: 445 LIFRNIRSVLGGRLRFMLCGGAPLSEESQRFFNICMGSTIGQGYGLTETFAGAAFSEWDD 504

Query: 494 PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            SVGRVGPP+PCC+IKLVSW+EGGY+T+DKPMPRGEIV+GG +VT GYF +P KT+EVYK
Sbjct: 505 TSVGRVGPPLPCCFIKLVSWEEGGYRTTDKPMPRGEIVIGGTSVTVGYFKDPEKTNEVYK 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462487|ref|XP_003601525.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357469953|ref|XP_003605261.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355490573|gb|AES71776.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|355506316|gb|AES87458.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/539 (71%), Positives = 453/539 (84%)

Query: 17  KGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEV 76
           K  G  G V A ++ +++PVL S+    KKK K RGVPVEV GE GYA+RNA+  ELVEV
Sbjct: 23  KDHGELGTVFAIVIGIIVPVLFSVFFLGKKKGKVRGVPVEVSGESGYAVRNARYSELVEV 82

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           PWKGA TMA LFEQSCK H  +RFLG RKL+GK+FVT+SDGRKFEK+HLG+YEW+TYGEV
Sbjct: 83  PWKGAPTMAHLFEQSCKKHTHNRFLGTRKLIGKEFVTSSDGRKFEKVHLGEYEWETYGEV 142

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           F R  +FASGL+  GH++D+  AI ++T  EWFIA QGCFRQ+ITVVTIY+SLGEDALIH
Sbjct: 143 FARVSNFASGLLKLGHDIDSHVAIFSDTRAEWFIALQGCFRQNITVVTIYASLGEDALIH 202

Query: 197 SLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFS 256
           SLNETQV+TLICD K L KL A+ S L +++N+IYFE+D  E+ +   G  SN  ++SF 
Sbjct: 203 SLNETQVSTLICDVKLLNKLDAIRSKLTSLQNIIYFEDDSKEEHTFSEGLSSNCKIASFD 262

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
           EVEKLGK SPV+PSLPS+N VAV+MYTSGSTGLPKGVMITHGNIVAT AA+ T+IPN G 
Sbjct: 263 EVEKLGKESPVEPSLPSKNAVAVVMYTSGSTGLPKGVMITHGNIVATTAAVMTVIPNLGS 322

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM 376
            DVYLAYLPLAHV E+AAES+ML AG AIGYGS +T+TDTS+K+KKGTKGDV+VLKPTL+
Sbjct: 323 KDVYLAYLPLAHVFEMAAESVMLAAGVAIGYGSPMTLTDTSNKVKKGTKGDVTVLKPTLL 382

Query: 377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF 436
            AVPAI DR+R+GVVKKVEEKGGL KNLF I YKRRLAAV+GSW GAWG+E+++WD I+F
Sbjct: 383 TAVPAIIDRIRDGVVKKVEEKGGLAKNLFQIAYKRRLAAVKGSWLGAWGVEKLVWDTIIF 442

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
           K +R VLGG +RFM+CGGAPLS DSQ+FINIC+GAPIGQ YGLTET AG+ FSE DD SV
Sbjct: 443 KKIRTVLGGNLRFMLCGGAPLSGDSQQFINICVGAPIGQGYGLTETFAGAAFSEADDYSV 502

Query: 497 GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           GRVGPP+PCCYIKLVSW+EGGY +SDKPMPRGE+VVGGF+VTAGYF N  KT EV+KV+
Sbjct: 503 GRVGPPLPCCYIKLVSWEEGGYLSSDKPMPRGEVVVGGFSVTAGYFKNQDKTDEVFKVD 561

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317373793|gb|ADV16379.1| long-chain acyl-CoA synthetase 2 [Helianthus annuus]

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/534 (70%), Positives = 456/534 (85%), Gaps = 4/534 (0%)

Query: 22  YGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGA 81
           YG   A + A+ +P++LS M   KKKVKQRGVPVEVGGEPG+ +RN +  +LV+VPW+GA
Sbjct: 16  YGAAIAVLFAVAVPLVLSSMFVGKKKVKQRGVPVEVGGEPGFGMRNVRSKKLVDVPWEGA 75

Query: 82  STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRAC 141
           +TMAALFEQSCK H Q RFLG RKL+ + F+  S GRKFEKLHLG+YEW+T+G+VF+R C
Sbjct: 76  TTMAALFEQSCKKHSQHRFLGTRKLIERSFIDGSGGRKFEKLHLGEYEWETFGQVFERVC 135

Query: 142 SFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET 201
           +FASGL+  GH+ DTR AI ++T  EW IAF+GCFRQ+ITVVTIY+SLG+DALIHSLNET
Sbjct: 136 NFASGLIQLGHDPDTRIAIFSDTRAEWLIAFEGCFRQNITVVTIYASLGDDALIHSLNET 195

Query: 202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
           +V+TLICDSK LKK+++VSSSL+T+ NVIYFE+D +E  S     I +W +SSFSEVEK+
Sbjct: 196 KVSTLICDSKLLKKVASVSSSLETVTNVIYFESDNTEALSK----IGDWQISSFSEVEKM 251

Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL 321
           G+ SPV   LP +  +AVIMYTSGSTGLPKGVM+THGN+VATAAA+ T+IP  G SDVY+
Sbjct: 252 GRNSPVKARLPIKKDIAVIMYTSGSTGLPKGVMMTHGNVVATAAAVMTVIPGIGTSDVYM 311

Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
           AYLPLAH+ ELAAE++M+ AG +IGYGS LT+TDTS+KIKKGT GD + LKPTLMA+VPA
Sbjct: 312 AYLPLAHIFELAAETVMITAGSSIGYGSALTLTDTSNKIKKGTMGDATALKPTLMASVPA 371

Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           I DRVR+GVVKKVEEKGGLT  LFNI Y+RRL AV+GSW GAWGLE++LWDAIVFK +++
Sbjct: 372 ILDRVRDGVVKKVEEKGGLTTKLFNIAYQRRLLAVDGSWLGAWGLEKLLWDAIVFKKIQS 431

Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP 501
           VLGG++RFM+CGGAPL+AD+QRFIN+C+GAPIGQ YGLTETCAG+ FSE DD SVGRVGP
Sbjct: 432 VLGGKMRFMLCGGAPLAADTQRFINVCIGAPIGQGYGLTETCAGAAFSEADDNSVGRVGP 491

Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           P+PC YIKLVSWDEGGY TSDKPMPRGE+VVGG++VTAGYFNN  KT EV+KV+
Sbjct: 492 PLPCVYIKLVSWDEGGYLTSDKPMPRGEVVVGGYSVTAGYFNNEEKTKEVFKVD 545

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2058384	720	LACS8 "AT2G04350" [Arabidopsis	0.935	0.748	0.641	3.7e-190
TAIR|locus:2204765	691	LACS9 "AT1G77590" [Arabidopsis	0.887	0.739	0.586	2e-166
UNIPROTKB|F1MBW3	722	ACSL4 "Uncharacterized protein	0.817	0.652	0.433	4.2e-102
UNIPROTKB|O60488	711	ACSL4 "Long-chain-fatty-acid--	0.817	0.662	0.427	3.8e-101
UNIPROTKB|Q2QC87	670	ACSL4 "Uncharacterized protein	0.817	0.702	0.429	7.9e-101
UNIPROTKB|O95573	720	ACSL3 "Long-chain-fatty-acid--	0.807	0.645	0.442	1.3e-100
UNIPROTKB|F1PEH9	670	ACSL4 "Uncharacterized protein	0.817	0.702	0.425	1.7e-100
RGD|69401	670	Acsl4 "acyl-CoA synthetase lon	0.817	0.702	0.429	1.7e-100
UNIPROTKB|F1P451	720	ACSL3 "Uncharacterized protein	0.873	0.698	0.406	3.4e-100
RGD|70552	720	Acsl3 "acyl-CoA synthetase lon	0.807	0.645	0.438	4.4e-100

TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
 Identities = 347/541 (64%), Positives = 417/541 (77%)

Query:    17 KGS--GIYXXXXXXXXXXXXXXXXSMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELV 74
             KGS  G+Y                S+++   KK K+R           Y +R+A+ PELV
Sbjct:    14 KGSDFGVYGIIGGGIVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELV 73

Query:    75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYG 134
             +VPW+GA+TM ALFEQSCK + +DR LG R+ + K+F+TASDGRKFEKLHLG+Y+WQ+YG
Sbjct:    74 DVPWEGAATMPALFEQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYG 133

Query:   135 EVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL 194
             EVF+R C+FASGLVN GHNVD R AI ++T  EWFIAFQGCFRQSITVVTIY+SLGE+AL
Sbjct:   134 EVFERVCNFASGLVNVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEAL 193

Query:   195 IHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSS 254
             I+SLNET+V+TLICD               T+KN+IY E DG +  S     + + TVSS
Sbjct:   194 IYSLNETRVSTLICDSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSS 253

Query:   255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
              SEVEKLG+++ V P LPS+NGVAVIM+TSGSTGLPKGVMITHGN+VATAA +  ++P  
Sbjct:   254 ISEVEKLGQKNAVQPILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKL 313

Query:   315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374
              ++D Y+AYLPLAHV EL AE ++  +G AIGYGS +T+TDTS+K+KKGTKGDVS LKPT
Sbjct:   314 DKNDTYIAYLPLAHVFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPT 373

Query:   375 LMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
             +M AVPAI DRVR            + K LF+  YKRRLAAV+GSWFGAWGLE+MLWDA+
Sbjct:   374 IMTAVPAILDRVREGVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDAL 433

Query:   435 VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP 494
             VFK +RAVLGG IRFM+ GGAPLS DSQRFINICMG+PIGQ YGLTETCAG+TFSEWDDP
Sbjct:   434 VFKKIRAVLGGHIRFMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDP 493

Query:   495 SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
             +VGRVGPP+PC Y+KLVSW+EGGY+ SDKPMPRGEIVVGG +VTAGYFNN  KT EVYKV
Sbjct:   494 AVGRVGPPLPCGYVKLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553

Query:   555 N 555
             +
Sbjct:   554 D 554

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)]

 Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
 Identities = 303/517 (58%), Positives = 379/517 (73%)

Query:    39 SMMVARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQD 98
             + +V + KK K+R           YAIRN +  E V   W+  ST+  LFE SC +H   
Sbjct:    15 TFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTLPELFEISCNAHSDR 74

Query:    99 RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA 158
              FLG RKL+ ++  T+ DG+ FEKLHLGDYEW T+G+  +  C FASGLV  GH  + R 
Sbjct:    75 VFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFASGLVQIGHKTEERV 134

Query:   159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXX 218
             AI A+T  EWFI+ QGCFR+++TVVTIYSSLGE+AL HSLNET+VTT+IC          
Sbjct:   135 AIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVTTVICGSKELKKLMD 194

Query:   219 XXXXXXTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVA 278
                   T+K VI  ++   E  S V+   SNW  +SF++V+KLG+ +PVDP+ P    VA
Sbjct:   195 ISQQLETVKRVICMDD---EFPSDVN---SNWMATSFTDVQKLGRENPVDPNFPLSADVA 248

Query:   279 VIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
             VIMYTSGSTGLPKGVM+THGN++AT +A+ T++P+ G+ D+Y+AYLPLAH+LELAAES+M
Sbjct:   249 VIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHILELAAESVM 308

Query:   339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXX 398
                G AIGYGS LT+TDTS+KIKKGTKGDV+ LKPT+M AVPAI DRVR           
Sbjct:   309 ATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDRVRDGVRKKVDAKG 368

Query:   399 XLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
              L+K LF+  Y RRL+A+ GSWFGAWGLE++LWD +VF+ +RAVLGG+IR+++ GGAPLS
Sbjct:   369 GLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGGQIRYLLSGGAPLS 428

Query:   459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
              D+QRFINIC+GAPIGQ YGLTETCAG TFSE++D SVGRVG P+PC ++KLV W EGGY
Sbjct:   429 GDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPCSFVKLVDWAEGGY 488

Query:   519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
              TSDKPMPRGEIV+GG N+T GYF N  KT EVYKV+
Sbjct:   489 LTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVD 525

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 211/487 (43%), Positives = 287/487 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    81 VIDIP--GADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLN 138

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G    +  AI  ET  EW IA Q CF+ +  +VT+Y++LG +
Sbjct:   139 YLEVNRRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGRE 198

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   199 AVVHGLNESEATYLITSVELLESKLKTALIDINCVKHIIYVDNKTINKAEYPEG----FE 254

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   255 IHSMQSVEELGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 314

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   315 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 374

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   375 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 428

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + I+FK V+A+LGG +R M+ GGAPLS  +QRF+N+C   P+GQ YGLTETC   T 
Sbjct:   429 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTV 488

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   489 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKT 548

Query:   549 SEVYKVN 555
             +E Y V+
Sbjct:   549 AEDYSVD 555

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)]

 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 208/487 (42%), Positives = 287/487 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    70 VIDIP--GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMN 127

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:   128 YLEVNRRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 187

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ + LI                 + +K++IY +N    K     G    + 
Sbjct:   188 AVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDNKAINKAEYPEG----FE 243

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG       + PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   244 IHSMQSVEELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 303

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   304 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 363

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   364 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 417

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T 
Sbjct:   418 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTV 477

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY  +DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   478 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKT 537

Query:   549 SEVYKVN 555
             +E Y V+
Sbjct:   538 AEDYSVD 544

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0060996 "dendritic spine development" evidence=IEA

GO:0070672 "response to interleukin-15" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

UNIPROTKB|Q2QC87 ACSL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 209/487 (42%), Positives = 287/487 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    29 VIDIP--GADTLDKLFDHAVAKFGKKDSLGTREVLSEENEMQPNGKVFKKLILGNYKWMN 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G    +  AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNLRVNNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   147 AVVHGLNESEATYLITSVELLESKLKTALVDINCVKHIIYVDNKTINKTEYPEG----FE 202

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENLSVPPSRPNPSDMAIVMYTSGSTGRPKGVMMHHCNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   P+GQ YGLTE+C   T 
Sbjct:   377 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVN 555
             +E Y V+
Sbjct:   497 AEDYSVD 503

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|O95573 ACSL3 "Long-chain-fatty-acid--CoA ligase 3" [Homo sapiens (taxid:9606)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 213/481 (44%), Positives = 285/481 (59%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             L  V + G  T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +
Sbjct:    77 LASVLYPGCDTLDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLS 136

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y +VF RA +F +GL   G    T  AI  ET  EW IA Q CF  +  +VT+Y++LG  
Sbjct:   137 YEDVFVRAFNFGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
             A++H+LNET+VT +I                   ++++I    DG     S    GI   
Sbjct:   197 AIVHALNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGI--- 251

Query:   251 TVSSFSEVEKLGKRSPVD--P-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
              V + + VE LG ++ ++  P S P  + +AVIMYTSGSTGLPKGVMI+H NI+A    +
Sbjct:   252 IVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGM 311

Query:   308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD
Sbjct:   312 AERIPELGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371

Query:   368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
              S+LKPTLMAAVP I DR+               +NLF + Y  ++  +        G  
Sbjct:   372 TSMLKPTLMAAVPEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRN 425

Query:   428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
               L D+ VF+ VR++LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T
Sbjct:   426 TPLCDSFVFRKVRSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGT 485

Query:   488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              SE  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG +VT GY+ N  K
Sbjct:   486 ISEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAK 545

Query:   548 T 548
             T
Sbjct:   546 T 546

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IMP

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IMP

GO:0044539 "long-chain fatty acid import" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IMP

GO:0051047 "positive regulation of secretion" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0035338 "long-chain fatty-acyl-CoA biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 207/487 (42%), Positives = 286/487 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG Y+W +
Sbjct:    29 VIDIP--GADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGSYKWMS 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ T LI                   +K++IY +N    K     G    + 
Sbjct:   147 AVVHGLNESEATYLITSVELLESKLKTALLDINCVKHIIYVDNKTINKVEYPEG----FE 202

Query:   252 VSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +     V P+ P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENLSVPPNRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF +GY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKLGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + ++FK V+A+LGG +R M+ GGAPLS  + RF+N+C   P+GQ YGLTE+C   T 
Sbjct:   377 PLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVN 555
             +E Y V+
Sbjct:   497 AEDYSVD 503

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

RGD|69401 Acsl4 "acyl-CoA synthetase long-chain family member 4" [Rattus norvegicus (taxid:10116)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 209/487 (42%), Positives = 286/487 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             ++++P  GA T+  LF+ +     +   LG R++L ++     +G+ F+KL LG+Y+W  
Sbjct:    29 VIDIP--GADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWIN 86

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y EV  R  +F SGL   G       AI  ET  EW IA Q CF+ +  +VT+Y++LG++
Sbjct:    87 YLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKE 146

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKDSGVSGGISNWT 251
             A++H LNE++ + LI                   +K++IY +N    +     G      
Sbjct:   147 AVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNKTINRAEYPEG----LE 202

Query:   252 VSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
             + S   VE+LG +   S + PS P+ + +A++MYTSGSTG PKGVM+ H N++A      
Sbjct:   203 IHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQC 262

Query:   309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
               IP  G  D Y+ YLPLAHVLEL AE      GC IGY S LT++D SSKIKKG+KGD 
Sbjct:   263 ERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDC 322

Query:   369 SVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
             +VLKPTLMAAVP I DR+             + K LF IGY  +L  ++       G + 
Sbjct:   323 TVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDA 376

Query:   429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
              L + I+FK V+A+LGG +R M+ GGAPLS  + RF+N+C   PIGQ YGLTE+C   T 
Sbjct:   377 PLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTV 436

Query:   489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT 548
             +E  D + GRVG P+ CC IKL  W EGGY   DKP PRGEIV+GG N++ GYF N  KT
Sbjct:   437 TEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKT 496

Query:   549 SEVYKVN 555
             +E Y V+
Sbjct:   497 AEDYSVD 503

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISO

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006641 "triglyceride metabolic process" evidence=IGI

GO:0007584 "response to nutrient" evidence=IEP

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISO

GO:0015908 "fatty acid transport" evidence=IGI

GO:0030307 "positive regulation of cell growth" evidence=IEA;ISO

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0032307 "negative regulation of prostaglandin secretion" evidence=IEA;ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0047676 "arachidonate-CoA ligase activity" evidence=IEA;ISO

GO:0060136 "embryonic process involved in female pregnancy" evidence=IEA;ISO

GO:0060996 "dendritic spine development" evidence=IMP

GO:0070672 "response to interleukin-15" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1P451 ACSL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 210/516 (40%), Positives = 299/516 (57%)

Query:    42 VARKKKVKQRXXXXXXXXXXXYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFL 101
             +A+ K+VK R           Y   N+ +  L  V + G  T+  +F+ +   +   + L
Sbjct:    45 IAKSKQVKARPVNNRPGGA--YRSVNS-LHCLASVLYPGCDTLDKVFKYAKTKYKDKKLL 101

Query:   102 GKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL 161
             G R++L ++      G+ F+K+ LG Y W +Y +V+ +A +F +GL   G    T  AI 
Sbjct:   102 GTREILKEEDEIQPSGKVFKKVILGKYTWLSYEDVYIKAVNFGNGLAVLGQQPKTNIAIF 161

Query:   162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXX 221
              ET  EW IA Q CF  +  +VT+Y++LG  A++H LNET+VTT+I              
Sbjct:   162 CETRAEWMIAAQACFMCNYQLVTLYATLGGAAIVHGLNETEVTTIITSKELMQTKLKEIV 221

Query:   222 XXXT-IKNVIYFENDGSEKD-SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAV 279
                  ++++I    DG     S    G+   T++S   +           + P  + +AV
Sbjct:   222 SQIPRLRHIITV--DGKPTTWSEFPKGVIVHTMASVQAMGAKADSGNKQQARPVPSDIAV 279

Query:   280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIML 339
             IMYTSGSTG+PKGVMI+H NI+A    +   IPN G  D+Y+ YLPLAHVLEL+AE + L
Sbjct:   280 IMYTSGSTGIPKGVMISHCNIIAGITGMAERIPNLGEKDIYIGYLPLAHVLELSAELVCL 339

Query:   340 CAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXX 399
               GC IGY S  T+ D SSKIKKG+KGDV+ LKPTLMAAVP I DR+             
Sbjct:   340 SHGCRIGYSSPQTLADQSSKIKKGSKGDVTTLKPTLMAAVPEIMDRIYKNVMNKVNEMTS 399

Query:   400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
               +NLF + Y  ++  +        G    L D+++F+ VR +LGG+IR ++CGGAPLSA
Sbjct:   400 FQRNLFILAYNYKMEQISK------GYTTPLCDSLIFRKVRMLLGGKIRILLCGGAPLSA 453

Query:   460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
              +QRF+NIC   P+GQ YGLTE+    T +E  D + GRVG P+ CC IKL++W+EGGY 
Sbjct:   454 ATQRFMNICFCCPVGQGYGLTESAGAGTITEVWDYTTGRVGAPLVCCEIKLLNWEEGGYY 513

Query:   520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
              +DKP PRGEI++GG NVT GY+ N G+T + + ++
Sbjct:   514 NTDKPYPRGEILIGGQNVTVGYYKNEGRTRKDFTID 549

GO:0003824 "catalytic activity" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051047 "positive regulation of secretion" evidence=IEA

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 211/481 (43%), Positives = 281/481 (58%)

Query:    73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQT 132
             L  V + G  T+  +F  +       R LG R++L ++     +G+ F+K+ LG Y W +
Sbjct:    77 LASVLYPGCDTLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLS 136

Query:   133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGED 192
             Y +VF RA  F +GL   G       AI  ET  EW IA Q CF  +  +VT+Y++LG  
Sbjct:   137 YEDVFIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGP 196

Query:   193 ALIHSLNETQVTTLICDXXXXXXXXXXXXXXXT-IKNVIYFENDGSEKD-SGVSGGISNW 250
             A++H LNET+VT +I                   ++++I    DG     S    G+   
Sbjct:   197 AIVHGLNETEVTNIITSKELLQTKLKDIVSLVPRLRHIITV--DGKPPTWSEFPKGV--- 251

Query:   251 TVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
              V + + V+ LG ++ VD    S P  + +AVIMYTSGSTG+PKGVMI+H NI+A+   +
Sbjct:   252 IVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGM 311

Query:   308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                IP  G  DVY+ YLPLAHVLEL+AE + L  GC IGY S  T+ D SSKIKKG+KGD
Sbjct:   312 ARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGD 371

Query:   368 VSVLKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
              SVLKPTLMAAVP I DR+               +NLF + Y  ++  +        G  
Sbjct:   372 TSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCS 425

Query:   428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
               L D  VF++VR +LGG IR ++CGGAPLSA +QRF+NIC   P+GQ YGLTE+    T
Sbjct:   426 TPLCDRFVFRNVRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGT 485

Query:   488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              +E  D + GRVG P+ CC IKL +W+EGGY  +DKP PRGEI++GG NVT GY+ N  K
Sbjct:   486 ITEVWDYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAK 545

Query:   548 T 548
             T
Sbjct:   546 T 546

GO:0003987 "acetate-CoA ligase activity" evidence=TAS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0006633 "fatty acid biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008152 "metabolic process" evidence=TAS

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016021 "integral to membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0034379 "very-low-density lipoprotein particle assembly" evidence=IEA;ISO

GO:0042998 "positive regulation of Golgi to plasma membrane protein transport" evidence=IEA;ISO

GO:0044539 "long-chain fatty acid import" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051047 "positive regulation of secretion" evidence=IEA;ISO

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJD4	LACS8_ARATH	6, ., 2, ., 1, ., 3	0.7313	0.8854	0.7083	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.963
3rd Layer	6.2.1.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029070001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (719 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018681001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa)						•			0.903
	GSVIVG00038876001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa)						•			0.899
	GSVIVG00033040001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa)						•			0.899
	GSVIVG00009919001	SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa)						•			0.899
	GSVIVG00009515001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00025319001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)						•			0.800
	GSVIVG00019100001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa)						•			0.800
	GSVIVG00009528001	SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	576
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-106
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-106
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	8e-97
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	5e-77
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-74
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	4e-74
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	9e-71
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	7e-65
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-53
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-47
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-36
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-35
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-34
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	8e-33
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-29
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-27
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-27
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-27
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	6e-26
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	2e-22
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	2e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-21
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-21
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	6e-21
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-20
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-19
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-19
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-19
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	9e-19
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-18
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-18
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-17
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-17
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	3e-17
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-17
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	8e-17
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-16
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	6e-16
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	7e-16
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-14
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-14
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-14
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-14
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	4e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	5e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-13
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-13
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-13
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	8e-13
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-12
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-11
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	3e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	4e-11
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	9e-11
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	9e-11
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-10
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	2e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-10
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-10
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-10
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-10
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-10
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	9e-10
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	9e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-09
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-09
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-09
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-09
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-09
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-09
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	8e-09
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	8e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	9e-09
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	9e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	9e-09
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-08
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-08
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-08
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-07
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	5e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	5e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	6e-07
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	6e-07
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-07
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-06
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-06
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-06
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	1e-06
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-06
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-06
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-06
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	4e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	5e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	7e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	7e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	8e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-06
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-05
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	1e-05
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-05
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-05
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-05
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-05
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-05
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-05
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	2e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-05
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-05
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	3e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	3e-05
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	4e-05
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	4e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-05
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	8e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	8e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-04
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-04
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	4e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	4e-04
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	8e-04
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	9e-04
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	0.001
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	0.001
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	0.001
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	0.001
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	0.001
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	0.002
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	0.002
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.003
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	0.003
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.004
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.004

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 1022 bits (2645), Expect = 0.0
 Identities = 388/531 (73%), Positives = 456/531 (85%), Gaps = 1/531 (0%)

Query: 25  VGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTM 84
           +GA IV +L+P+LL++++   KK K+RGVPV+VGGEPGYAIRNA+ PELVE PW+GA+T+
Sbjct: 1   MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60

Query: 85  AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
           AALFEQSCK +   R LG RKL+ ++F T+SDGRKFEKLHLG+YEW TYG+VF+R C+FA
Sbjct: 61  AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120

Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
           SGLV  GHN + R AI A+T  EW IA QGCFRQ+ITVVTIY+SLGE+AL HSLNET+VT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180

Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
           T+ICDSKQLKKL  +SS L+T+K VIY +++G + DS +SG  SNWTVSSFSEVEKLGK 
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGS-SNWTVSSFSEVEKLGKE 239

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           +PVDP LPS N +AVIMYTSGSTGLPKGVM+THGNIVAT A + T++P  G++DVYLAYL
Sbjct: 240 NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYL 299

Query: 325 PLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD 384
           PLAH+LELAAES+M   G AIGYGS LT+TDTS+KIKKGTKGD S LKPTLM AVPAI D
Sbjct: 300 PLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILD 359

Query: 385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
           RVR+GV KKV+ KGGL K LF+I YKRRLAA+EGSWFGAWGLE++LWDA+VFK +RAVLG
Sbjct: 360 RVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           GRIRFM+ GGAPLS D+QRFINIC+GAPIGQ YGLTETCAG+TFSEWDD SVGRVGPP+P
Sbjct: 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLP 479

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
           CCY+KLVSW+EGGY  SDKPMPRGEIV+GG +VT GYF N  KT EVYKV+
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVD 530

Length = 696

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  527 bits (1359), Expect = 0.0
 Identities = 188/435 (43%), Positives = 249/435 (57%), Gaps = 56/435 (12%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G YEW +Y EV +RA +  SGL   G     +  I AE   EW I  Q CF QS+ +V +
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
           Y +LGE+A+ + LNET+++ + CD+                                   
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                 V SF E+E+LGK++ V P+ P    +A IMYTSG+TG PKGVM+THGNIVA  A
Sbjct: 86  ----VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVA 141

Query: 306 AIKTLIPN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
            I  ++P   G +DVY++YLPLAH+ E   E++ L  G  IGY S  T         +G 
Sbjct: 142 GINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGL 192

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
           KGD+  LKPT+   VP + DR+ +G++ KV  KGGL + LFN  Y  +LAA+        
Sbjct: 193 KGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH---- 248

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
           G    LWD +VFK ++A LGGR+R M+ GGAPLS D+Q F+ + +G P+ Q YGLTETCA
Sbjct: 249 GYASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCA 308

Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
           G T S+  D + G VGPP+PCC IKLV   E GY   D P PRGEI + G NV  GY+ N
Sbjct: 309 GGTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKN 367

Query: 545 PGKTSEVYKVN--FH 557
           P KT+E +  +  FH
Sbjct: 368 PEKTAEAFDEDGWFH 382

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  334 bits (859), Expect = e-106
 Identities = 162/487 (33%), Positives = 252/487 (51%), Gaps = 33/487 (6%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRK--FEKLHLGDYEWQTY 133
           W          E+ CK     R L  R +  + K+ V  +DG++   E  H  +  + TY
Sbjct: 65  WYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITY 124

Query: 134 GEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDA 193
            E+++R  +F  GL   G    +  AI  ET  EW  +  G + QS+   T+Y++LGEDA
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184

Query: 194 LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKN--VIYFENDGSEKDSGVSGGISNWT 251
           L ++L ET+   ++C+ K +  L  +  S   + N  +IY ++  +  D+          
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKS-GGMPNTTIIYLDSLPASVDTE------GCR 237

Query: 252 VSSFSEVEKLGKR--SPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
           + ++++V   G    S    ++P  N  +A+IMYTSG+TG PKGVM THG++ A   A++
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALE 297

Query: 309 ----TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
                LI  P   + Y +YLPLAH++E    +I L  G  IG+GS  T+TDT ++     
Sbjct: 298 DRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----P 353

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
            GD++  +P  +  VP IFD +++ V  K+   G L + +F+  Y+ RL A++       
Sbjct: 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------ 407

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
           G +   W+  VF + RAVLGGR+R M+ GG PLSA +Q F+N+  G  + Q +GLTET  
Sbjct: 408 GKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466

Query: 485 GSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
                   D     VG  +    +KL+  +E  YK +D P PRGEI++ G  +  GY+  
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQ 524

Query: 545 PGKTSEV 551
              T EV
Sbjct: 525 EELTREV 531

Length = 700

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  331 bits (851), Expect = e-106
 Identities = 136/445 (30%), Positives = 209/445 (46%), Gaps = 40/445 (8%)

Query: 116 DGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGC 175
           DG       LG +E  TY E+++R  + ASGL++ G     R AI A    EW IA    
Sbjct: 31  DGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAI 90

Query: 176 FRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND 235
                  V IYS+   + L + LNE++   +  ++++L  L             +    D
Sbjct: 91  LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIID 150

Query: 236 GSEKDSGVSGGISNWTVSS-----FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
                  V        V          ++  G    + P  P  + +A I+YTSG+TG P
Sbjct: 151 --LVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAP--PKPDDLATIIYTSGTTGTP 206

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
           KGVM+TH N++A  A I  ++P  G  D  L++LPLAH+ E A E  +        YG  
Sbjct: 207 KGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGV 260

Query: 351 LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN---- 406
             +     +       D+  ++PT+M  VP ++++V +G+++KV +   + + LF     
Sbjct: 261 TVLFKEDPRT---LLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALK 317

Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
           + YK+   A+ G    +W L   + D +VF+ +R  LGGRIR+ + GGAPLS +   F  
Sbjct: 318 VAYKKISRALLGGGPLSWLL---VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR 374

Query: 467 ICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP 526
             +G PI + YGLTET A  + +  D   +G VG P+P   +K+                
Sbjct: 375 S-LGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-------------- 419

Query: 527 RGEIVVGGFNVTAGYFNNPGKTSEV 551
            GEI+V G NV  GY+ NP  T+E 
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEA 444

Length = 613

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  308 bits (790), Expect = 8e-97
 Identities = 163/513 (31%), Positives = 246/513 (47%), Gaps = 56/513 (10%)

Query: 60  EPGYAI--------------RNAQIP-ELVEV--PWKGASTMAALFEQSCKSHPQDRFLG 102
           E GY++              R+A+ P +LV          T+   F  + ++    ++LG
Sbjct: 5   EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLG 64

Query: 103 KRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA 162
            R           DG       +G+Y+W TYGE      +  SGLV  G        +  
Sbjct: 65  TR--------IRVDGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYF 110

Query: 163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS 222
               EW I    C   S   V +Y +LG DA+   +N  +V  + C  + L  L +  S 
Sbjct: 111 INRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE 170

Query: 223 LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY 282
           + +++ ++          S  SG  +   + ++S++   G+ SP     P    VA I Y
Sbjct: 171 IPSVRLIVVVGGADEPLPSLPSG--TGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICY 228

Query: 283 TSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG 342
           TSG+TG PKGV++THGN++A  A           SDV+++YLPLAH+ E   + +ML  G
Sbjct: 229 TSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVNQIVMLHYG 287

Query: 343 CAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL 400
            A+G+  G  L + D           D++ L+PT+  +VP +++R+ +G+   V+E GGL
Sbjct: 288 VAVGFYQGDNLKLMD-----------DLAALRPTIFCSVPRLYNRIYDGITNAVKESGGL 336

Query: 401 TKNLFNIGYK-RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA 459
            + LFN  Y  ++ A   G           +WD +VF  ++A LGGR+RFM  G +PLS 
Sbjct: 337 KERLFNAAYNAKKQALENGKNPSP------MWDRLVFNKIKAKLGGRVRFMSSGASPLSP 390

Query: 460 DSQRFINICMGAPIGQAYGLTET-CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGY 518
           D   F+ IC G  + + YG+TET C  S   E  D   G VG P P C +KLV   E  Y
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEVKLVDVPEMNY 449

Query: 519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
            + D+P PRGEI V G  +  GY+ +  +T EV
Sbjct: 450 TSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV 482

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  256 bits (655), Expect = 5e-77
 Identities = 147/479 (30%), Positives = 237/479 (49%), Gaps = 46/479 (9%)

Query: 87  LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASG 146
           +F +S + +P ++ LG R+++        DG+      +G Y W+TY EV++      S 
Sbjct: 47  IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVYEEVLQIGSA 92

Query: 147 LVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL 206
           L   G    +R  I    C +W +A + C   S+  V +Y +LG  A+ + ++  ++  +
Sbjct: 93  LRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFV 152

Query: 207 ICDSKQLKK-LSAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSSFSEVEKLGKR 264
               K++K+ L     S K +K ++ F +   E  D     G+  +   S+ +   +GK 
Sbjct: 153 FVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY---SWIDFLHMGKE 209

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----PGRSDVY 320
           +P + + P    +  IMYTSG++G PKGV++TH  +      +   +          DVY
Sbjct: 210 NPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVY 269

Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAA 378
           L++LPLAH+L+   E      G ++GY  G    + D           D+  LKPTL+A 
Sbjct: 270 LSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------DLMELKPTLLAG 318

Query: 379 VPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM---LWDAIV 435
           VP +F+R+ EG+ K ++E     + +FN  YK +LA     W       +    + D + 
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA-----WMNRGYSHKKASPMADFLA 373

Query: 436 FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
           F+ V+A LGGR+R +I GGAPLS + + F+ +   A + Q YGLTET   +T    D+  
Sbjct: 374 FRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMC 433

Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
            +G VG P     ++L    E GY    +P PRGEI V G  + +GY+ NP  T EV K
Sbjct: 434 MLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVMK 491

Length = 660

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  250 bits (639), Expect = 1e-74
 Identities = 153/502 (30%), Positives = 240/502 (47%), Gaps = 66/502 (13%)

Query: 69  QIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDY 128
            +P  ++ PW+        F  + K +P ++ LG+R++        +D +      +G Y
Sbjct: 37  DLPADIDSPWQ-------FFSDAVKKYPNNQMLGRRQV--------TDSK------VGPY 75

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
            W TY EV+D A    S + + G N   R  I    C EW IA + C  Q IT V +Y +
Sbjct: 76  VWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDT 135

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAV----SSSLKTIKNVIYFENDGSEKDSGVS 244
           LG +A+   +N  +V+       ++  + +     SS+LKTI  V + +    +K+    
Sbjct: 136 LGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTI--VSFGDVSSEQKEEAEE 193

Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPS--QNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
            G+S ++   FS +  L      D  LP   +  +  IMYTSG+TG PKGV++T+  I+A
Sbjct: 194 LGVSCFSWEEFSLMGSL------DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA 247

Query: 303 TAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDT 356
              +   L+    R     D Y +YLPLAHV +   E+  +  G +IG+  G    + + 
Sbjct: 248 EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME- 306

Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
                     DV  LKPT+   VP ++DR+  G+++K+   G L K LF+  Y  +L  +
Sbjct: 307 ----------DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356

Query: 417 EGSWFGAWGLERM----LWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP 472
                   GL++       D +VF  ++  LGGR+R ++ G APL    + F+ +   + 
Sbjct: 357 RK------GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSV 410

Query: 473 IGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKT-SDKPMPRGEI 530
           + Q YGLTE+C G   S  +    VG VG P+     +L S  E GY   SD  +PRGEI
Sbjct: 411 LSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD--VPRGEI 468

Query: 531 VVGGFNVTAGYFNNPGKTSEVY 552
            + G  + +GY      T EV 
Sbjct: 469 CLRGNTLFSGYHKRQDLTEEVL 490

Length = 660

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  243 bits (622), Expect = 4e-74
 Identities = 114/426 (26%), Positives = 175/426 (41%), Gaps = 120/426 (28%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G ++  T+ E+ +R    A+GL+  G     R AILAE   EW IA           V I
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
           Y +   +         +V  ++ DS       A          V++ E+   +       
Sbjct: 61  YPTSSPE---------EVAYILNDSG------AR---------VVFVEDKPDD------- 89

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                                          +A ++YTSG+TG PKGVM+TH N++A AA
Sbjct: 90  -------------------------------LATLIYTSGTTGNPKGVMLTHRNLLAQAA 118

Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTK 365
           A+  +IP     D  L++LPLAHV E       L     +  G+ +   ++   + +   
Sbjct: 119 ALLEVIP-LSPGDRVLSFLPLAHVFEQ-----RLGEYLPLSSGARVNFAESPETLLE--- 169

Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
            D+  ++PT+  AVP +++++  G+  KV   G L + LF                  W 
Sbjct: 170 -DLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLF-----------------RW- 210

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
                          A+ GGR+RF + GGAPL  +   F    +G PI + YGLTET   
Sbjct: 211 ---------------ALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGV 254

Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           +T +   D  +G VG P+P   +++                 GEI+V G NV  GY+ NP
Sbjct: 255 ATVNRPGDIRIGTVGKPLPGVEVRIA--------------EDGEILVRGPNVMKGYYKNP 300

Query: 546 GKTSEV 551
             T+E 
Sbjct: 301 EATAEA 306

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  233 bits (595), Expect = 9e-71
 Identities = 105/429 (24%), Positives = 157/429 (36%), Gaps = 76/429 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +RA   A+ L   G     R AIL     EW +A     +     V +  SL  
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L + L +++   LI D + L KL  V   L  +  +I                  +  
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV--------------GDDGE 106

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
                + E L   S   P+ P   + +A I+YTSG+TG PKGVM+TH N++A AA +   
Sbjct: 107 GLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAER 166

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
                  D  L  LPL     +      L AG       TL +    +         +  
Sbjct: 167 FG-LTPGDRVLLLLPLHFDGSVWEIFGPLLAGG------TLVLVPKFTLDPARLLDLIEK 219

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T++  VP +   +                                       L+   
Sbjct: 220 YKVTVLYGVPTLLRLL---------------------------------------LKAPE 240

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFS 489
                  S+R V        + GG PL  +  +R      G P+   YG TET   +T +
Sbjct: 241 EKKYDLSSLRLV--------LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292

Query: 490 EWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
              DP    G +G P+P   +K++  DE G      P   GE+ + G  V  GY N+P  
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVL--DEEG--EPVPPGEVGELCIRGPGVARGYLNDPEL 348

Query: 548 TSEVYKVNF 556
           T+E +  + 
Sbjct: 349 TAERFVEDG 357

Length = 412

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  224 bits (571), Expect = 7e-65
 Identities = 151/491 (30%), Positives = 240/491 (48%), Gaps = 52/491 (10%)

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           P +G  +   +F  S + +P +  LG+R++         DG+       G Y WQTY EV
Sbjct: 40  PIEGMDSCWDVFRMSVEKYPNNPMLGRREI--------VDGKP------GKYVWQTYQEV 85

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
           +D      + L + G   + +  I      EW I+ + C    +  V +Y +LG  A+  
Sbjct: 86  YDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEF 145

Query: 197 SLNETQVTTLICDSKQLKKL-SAVSSSLKTIKNVIYFENDGSE-KDSGVSGGISNWTVSS 254
            ++ ++V+ +  + K++ +L     +S + +K V+ F     E K+   + G+    + +
Sbjct: 146 IISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGL---VIYA 202

Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
           + E  KLG+    D  +  ++ +  IMYTSG+TG PKGVMI++ +IV   A +  L+ + 
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262

Query: 315 GRS----DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
             +    DVYL+YLPLAH+ +   E   +  G AIG+       D    I+     D+  
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR----GDVKLLIE-----DLGE 313

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY-------KRRLAAVEGSWFGA 423
           LKPT+  AVP + DRV  G+ KK+ + G L K +F+  +       K+  + VE S    
Sbjct: 314 LKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPL-- 371

Query: 424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC 483
                   D +VF  V+  LGG +R ++ G APL++  + F+ +     + Q YGLTE+C
Sbjct: 372 -------CDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESC 424

Query: 484 AGSTFSEWDDP--SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY 541
           AG TF    D    +G VGPPVP   I+L S  E  Y       PRGEI + G  + +GY
Sbjct: 425 AG-TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGY 482

Query: 542 FNNPGKTSEVY 552
           +     T EV 
Sbjct: 483 YKREDLTKEVL 493

Length = 666

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  189 bits (482), Expect = 3e-53
 Identities = 121/479 (25%), Positives = 180/479 (37%), Gaps = 98/479 (20%)

Query: 82  STMAALFEQSCKSHPQD---RFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFD 138
            T+A+L E++ + +P      FLG+   L                        TY E+  
Sbjct: 11  LTLASLLERAARRNPDRPALIFLGRGGRL------------------------TYRELDR 46

Query: 139 RACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSL 198
           RA   A+ L   G     R AIL     E+ IAF    R     V +   L    L + L
Sbjct: 47  RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYIL 106

Query: 199 NETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEV 258
           N+     LI  ++    L AV+ +L  +  V+            + G   +    +   +
Sbjct: 107 NDAGAKVLITSAEFAALLEAVAEALPVVLVVL------------LVGDADDRLPITLEAL 154

Query: 259 EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRS 317
              G     D      + +A ++YTSG+TGLPKGV++TH N++A AA I   L       
Sbjct: 155 AAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD 214

Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
           DV L++LPL H+  L    I+      +G G TL +        +     +   K T+++
Sbjct: 215 DVVLSWLPLFHIFGL----IVGLLAPLLG-GGTLVLLSPEPFDPEEVLWLIEKYKVTVLS 269

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
            VP                              R L                  +     
Sbjct: 270 GVPTFL---------------------------RELLD--------------NPEKDDDD 288

Query: 438 SVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
                L   +R ++ GGAPL  +  +RF        I + YGLTET    T +  DD   
Sbjct: 289 -----LSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLA 343

Query: 496 -VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
             G VG P+P   +++V   +GG      P   GEI V G NV  GY+N P  T+E + 
Sbjct: 344 KPGSVGRPLPGVEVRIVD-PDGG---EVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFD 398

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  173 bits (440), Expect = 5e-47
 Identities = 125/451 (27%), Positives = 199/451 (44%), Gaps = 65/451 (14%)

Query: 126 GDYEWQ--TYGEVFDRACSFASGLVNFG----HNVDTRAAILAETCVEWFIAFQGCFRQS 179
           G   W   TY + ++     A   +  G    H+V     IL     EWFIA  G     
Sbjct: 2   GKDGWHTLTYKQYYEACRQAAKAFLKLGLERFHSV----GILGFNSPEWFIAAVGAIFAG 57

Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDS-KQLKKLSAVSSSLKTIKNVIYFENDGSE 238
              V IY++   +A  +    ++   L+ D+ KQL+K+ A+   L  +K +I +     E
Sbjct: 58  GIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKE 117

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSP---VDPSLPSQ--NGVAVIMYTSGSTGLPKGV 293
           K+  +          S+ E  +LG+  P   +D  + SQ  N    ++YTSG+TG+PKGV
Sbjct: 118 KEPNLY---------SWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGV 168

Query: 294 MITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
           M++H NI  TA A  K +       +  ++YLPL+H+   AA+ + +     I  G  + 
Sbjct: 169 MLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLP--ISVGGCVY 223

Query: 353 MTDTSSKIKKGTKGDVSVL---KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF---- 405
                +   KGT   V  L   +PT    VP ++++++E +     +  GL + +     
Sbjct: 224 FAQPDA--LKGTL--VKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAK 279

Query: 406 NIGYKRRLAAVEGSW--FGAWGLERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQ 462
            +G +  L  + G       + L + L    VFK VR  LG  R +    G AP+S ++ 
Sbjct: 280 GVGLETNLKLMGGESPPPMCFRLAKKL----VFKKVRKALGLDRCQKFFTGAAPISRETL 335

Query: 463 RF---INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYK 519
            F   +NI    PI + YG++ET    T S   +  +   G  +P C  K+ + D  G  
Sbjct: 336 EFFLSLNI----PIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI- 390

Query: 520 TSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
                   GEI + G +V  GY N   KT E
Sbjct: 391 --------GEICIWGRHVFMGYLNMEEKTEE 413

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  141 bits (358), Expect = 2e-36
 Identities = 104/428 (24%), Positives = 163/428 (38%), Gaps = 90/428 (21%)

Query: 132 TYGEVFDRACSFASGLVNFG---HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           TY E+       A+GL   G    +V     +L+   +E+ + F         V T    
Sbjct: 34  TYAELERLVRRLAAGLAARGGRKGDV---VLLLSPNSLEFPVVFLAVLSAGAVVTTANPL 90

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
                +   + ++     I  S+  +KL++++      + V+         DS   G  +
Sbjct: 91  YTPAEIAKQVKDSGAKLAITTSELAEKLASLAL-----EPVVLL-------DSADDGSAA 138

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
              +    E E       V      Q+ VA + Y+SG+TG  KGVM+TH N++A  A + 
Sbjct: 139 IDDLLFADEPEP---PVVVIK----QDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLV 191

Query: 309 TLI-PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTK 365
               PN  R DV L  LP+ H+  L   +++L A   +G  + + M   D    +     
Sbjct: 192 AGEGPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAA--- 244

Query: 366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
             +   K T +  VP I       V+        L K+   I  K  L+++         
Sbjct: 245 --IEKYKVTHLPVVPPI-------VL-------ALVKH--PIVDKYDLSSL--------- 277

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCA 484
                                 + +  G APL  + ++ F     G  +GQ YG+TE+  
Sbjct: 278 ----------------------KQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315

Query: 485 GST--FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
            +T       DP  G VG  VP    K+V  + G    S  P   GE+ V G  V  GY 
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372

Query: 543 NNPGKTSE 550
           NNP  T+E
Sbjct: 373 NNPEATAE 380

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  138 bits (350), Expect = 2e-35
 Identities = 114/479 (23%), Positives = 174/479 (36%), Gaps = 147/479 (30%)

Query: 85  AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFA 144
           A L E++ +  P            +  +T   GRK            TY E+ + +  FA
Sbjct: 2   ADLLERAARRFP-----------DRPALT-FFGRKL-----------TYAELDELSDRFA 38

Query: 145 SGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVT 204
           + L   G     R A++   C ++ IA+ G  +    VV +        L H LN++   
Sbjct: 39  AYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAK 98

Query: 205 TLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKR 264
            LI                                              SF +    G  
Sbjct: 99  VLIV-------------------------------------------AISFEDALASGAP 115

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS-DVYLAY 323
            P+ P   S + +AV+ YT G+TG+PKG M+TH N+VA    I   + +     D +L  
Sbjct: 116 LPL-PVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174

Query: 324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLK------PTLMA 377
           LPL H+  L      +     +  G+T  +              ++VLK       T+  
Sbjct: 175 LPLFHIFGL-----TVNMLLGLRLGATNVLVPNFR--------PINVLKEIKRYRFTIFP 221

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
            VP +++                   L N                    ++       F 
Sbjct: 222 GVPTLYNA------------------LLN----------------HPEFKKYD-----FS 242

Query: 438 SVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS- 495
           S+R          I GGAPL  + ++RF     GAP+ + YGLTET   +T +  D    
Sbjct: 243 SLRLC--------ISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGERK 293

Query: 496 VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEV 551
            G +G P+P   +K+V  DEG        +P    GE+VV G  V  GY+N P +T+EV
Sbjct: 294 PGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (347), Expect = 1e-34
 Identities = 100/442 (22%), Positives = 161/442 (36%), Gaps = 107/442 (24%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R    A+ L   G     R A+      E+  A+    +    +  I   L  
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + + + LN+ +   ++ DS+ +  L+A+   L T++ VI  E DG               
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIV-EGDGPAAPLAP-------E 144

Query: 252 VSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
           V  + E+  L   S         +N  A ++YTSG+TG PKGV+++H N+   + A+   
Sbjct: 145 VGEYEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW 202

Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTDTSSKIKKGT 364
           +    R DVYL  +P+ HV       + L AG            + L + +T        
Sbjct: 203 L-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIET-------- 253

Query: 365 KGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
                  + T   AVP I+    + ++K                  R         F + 
Sbjct: 254 ------ERVTFFFAVPTIW----QMLLK----------------APR----AYFVDFSSL 283

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGL 479
                                  R +I GGA L         ++F     G  + Q YG+
Sbjct: 284 -----------------------RLVIYGGAALPPALLREFKEKF-----GIDLVQGYGM 315

Query: 480 TETCAGSTFS--EWDDPSV----GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----G 528
           TET    +    E   P         G P+P    ++V  D+ G       +P      G
Sbjct: 316 TETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIV--DDDG-----DELPPDGGEVG 368

Query: 529 EIVVGGFNVTAGYFNNPGKTSE 550
           EI+V G  +  GY+N P  T+E
Sbjct: 369 EIIVRGPWLMQGYWNRPEATAE 390

Length = 521

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  131 bits (332), Expect = 8e-33
 Identities = 109/434 (25%), Positives = 180/434 (41%), Gaps = 75/434 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +V D+A   A+ L + G     R AIL++ C EW IA    +      V +Y +L  
Sbjct: 8   TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67

Query: 192 DALIHSLNETQVTTLIC---DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
           + + + L  +    L     D     K + V   L TI   I F     +          
Sbjct: 68  ETIRYVLEHSDAKALFVGKLDDWDAMK-AGVPEGLPTI---ILFPYSTLKDHY------- 116

Query: 249 NWTVSSFSEVEKLGKRSPVDPS-LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                 + ++  L    P+    LP    +A I+YTSG+TG PKGVM++ G     A   
Sbjct: 117 -----KWDDL--LAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGT 169

Query: 308 KTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKG 366
             +I     +D  L+YLPLAH+ E    E   L +G  + +  +L   DT +        
Sbjct: 170 IEII-GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESL---DTFAA------- 218

Query: 367 DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
           D+   +PT+  +VP ++ + ++G++ K+  +      L  I                   
Sbjct: 219 DLQRARPTVFFSVPRLWTKFQQGILAKLPPE--KLNLLLKI------------------- 257

Query: 427 ERMLWDAIVFKSVRAVLG-GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
              +  ++V K +   LG  + R    G AP+      +    +G PI + YG+TE  A 
Sbjct: 258 --PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAY 314

Query: 486 STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           ST +   D  +G VG P+P   +K+    E            GEI++    + +GY+ +P
Sbjct: 315 STLNYPGDRRIGTVGKPIPGVELKI---SED-----------GEILIRSPGLMSGYYKDP 360

Query: 546 GKTSEVYKVN--FH 557
            KT+E +  +   H
Sbjct: 361 EKTAEAFTEDGWLH 374

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  118 bits (298), Expect = 2e-29
 Identities = 75/275 (27%), Positives = 115/275 (41%), Gaps = 59/275 (21%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A I+YTSG+TG PKGV+++H N++A A A+   I      DV L+ LPL HV+      
Sbjct: 2   PAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGDVLLSVLPLFHVVGG---- 56

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
                  A+  G T+ + +         +  +   + T++  VP ++D +      K  E
Sbjct: 57  -GSGLLGALLAGGTVVLYEGFPFPLSFLE-LIEQYRVTVLFGVPTLYDALA-----KAAE 109

Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
             G             L+                                +R +I GG P
Sbjct: 110 DRG-----------YDLS-------------------------------SLRLLISGGEP 127

Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDE 515
           LS +         GAPI + YGLTET   ++ +   +    G VG PVP   +++V  +E
Sbjct: 128 LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVD-EE 186

Query: 516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
           G      +    GE+VV G  V  GY+NNP +T+ 
Sbjct: 187 GKPLPPGEV---GELVVRGPWVMKGYWNNPPETTA 218

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  116 bits (292), Expect = 1e-27
 Identities = 59/235 (25%), Positives = 93/235 (39%), Gaps = 22/235 (9%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
            + A  G +            T+ ++  +A   A GL   G       A+++   +E+  
Sbjct: 2   LIDADTGTEL-----------TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPP 50

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
            F GC      V     S   D L H L  ++   + CD  +L K+   +  L  +  +I
Sbjct: 51  VFLGCLAAGGIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRII 110

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++       GV            +E E       +D      +  A ++Y+SG+TGLP
Sbjct: 111 VLDS----APDGVLRIEDLLEPRLGAEDEFR-PTPLIDGK----DDTAALLYSSGTTGLP 161

Query: 291 KGVMITHGNIVATAA-AIKTLIPNP-GRSDVYLAYLPLAHVLELAAESIMLCAGC 343
           KGVM++H NI+A  +    TL  NP   +DV L +LP  H   L      L  G 
Sbjct: 162 KGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGA 216

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (285), Expect = 2e-27
 Identities = 78/289 (26%), Positives = 112/289 (38%), Gaps = 83/289 (28%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I YTSG+TG PKG M+TH N++    +I          D  L  +PL HV  L    
Sbjct: 4   PALIQYTSGTTGRPKGAMLTHRNVLNNGYSI-ARRLGLTEGDRTLVPVPLFHVFGLVL-G 61

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV-SVL------KPTLMAAVPAIFDRVREG 389
           ++      +  G+TL + +         K D  + L      + T +  VP +F  +   
Sbjct: 62  VLAS----LTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIAL--- 105

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                                               LE   +D     S+R         
Sbjct: 106 ------------------------------------LEHPDFDKFDLSSLR--------T 121

Query: 450 MICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPC 505
            I GGAP+  +  R I      A I   YG+TET    T +  DDP     G VG P+P 
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181

Query: 506 CYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEV 551
             +K+V   +GG       +P    GEI V G++V  GY+N+P  T+E 
Sbjct: 182 VEVKIVD-PDGG------EVPPGEVGEICVRGYSVMKGYYNDPEATAEA 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  114 bits (287), Expect = 4e-27
 Identities = 90/410 (21%), Positives = 142/410 (34%), Gaps = 89/410 (21%)

Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
              I+  + V   +A           V +  + GE+ L  +  +  + T+I     L+KL
Sbjct: 33  NIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVITSRAFLEKL 92

Query: 217 SAV-SSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV------SSFSEVEKLGKRSPVDP 269
                  L     ++Y E+        +   IS          +           +   P
Sbjct: 93  KLEGLVVLLEGVRIVYLED--------LRAKISKADKLKAFLAAKLPPALLRLFLAGAKP 144

Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
             P     AVI++TSGS GLPKGV+++H N++A    I  +I      DV L  LPL H 
Sbjct: 145 DDP-----AVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-LNTEDVLLGALPLFHA 198

Query: 330 LELAAESIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE 388
             L    ++ L  G  + Y          +++       +   K T++   P        
Sbjct: 199 FGLTVTLLLPLLTGLRVVYYPNPLDAKKIAEL-------IRDYKATILCGTPTFLR---- 247

Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
                              GY R                        F S+R V      
Sbjct: 248 -------------------GYARN------------------AHPEDFSSLRLV------ 264

Query: 449 FMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY 507
             + G   L     + F     G  I + YG TE     + +       G VG P+P   
Sbjct: 265 --VAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 508 IKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYKV 554
           +++VS +      + + +P GE   ++V G NV +GY NN  KTSEV  +
Sbjct: 322 VRIVSPE------THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVL 365

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  108 bits (273), Expect = 6e-26
 Identities = 82/292 (28%), Positives = 116/292 (39%), Gaps = 88/292 (30%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I+YTSG+TG PKGVM+TH N++A A        +    DVYL   PL H       +
Sbjct: 3   PALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHA------A 55

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD-VSVL------KPTLMAAVPAIFDRVREG 389
             L    A+  G T+ +           K D  +VL      + T    VP +F      
Sbjct: 56  GGLFLLPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMF------ 100

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                                +RL  +              +      S+R         
Sbjct: 101 ---------------------QRLLRLPD------------FARYDLSSLR--------L 119

Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVP 504
           +I G AP+ A+ +R +    G    Q YG+TET   +T    +D      SVGR   PVP
Sbjct: 120 IIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR---PVP 176

Query: 505 CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVYK 553
              +++V  DE G     + +P    GEIVV G  V AGY+N P  T+E  +
Sbjct: 177 GVEVRIV--DEDG-----RELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR 221

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  101 bits (253), Expect = 2e-22
 Identities = 109/499 (21%), Positives = 198/499 (39%), Gaps = 123/499 (24%)

Query: 132 TYGEVFDRACSFASGLVNF-GHNVDTRA-------------AILAETCVEWFIAFQGCFR 177
           TYG  F +  SF+  L  + G  +  +               +     + W +A   C  
Sbjct: 93  TYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACML 152

Query: 178 QSITVVTIYSSLGEDALIHSLNETQ----------VTTLICDSKQ---LKKLSAVSSSLK 224
             +T + ++S    D ++  LNET+          V  L+    +   LKKL  + + +K
Sbjct: 153 SGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIK 212

Query: 225 TIKNVIYFE--NDGSE-KDSGVSGGISNWTVSSFS-------------EVEKL------- 261
           + +  I  E  N+GS   ++G          +  S             + EKL       
Sbjct: 213 SKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK 272

Query: 262 ------------------GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
                              K +         + +  I+YTSG++G PKGVM+++ N+   
Sbjct: 273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNL--- 329

Query: 304 AAAIKTLIP----------NPGRSDVYLAYLPLAHVLE--LAAESIMLCAGCAIGYGSTL 351
                T++P          NP     +L+YLP++H+ E  +A  S ML        G T+
Sbjct: 330 ---YNTVVPLCKHSIFKKYNP---KTHLSYLPISHIYERVIAYLSFML--------GGTI 375

Query: 352 TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE----KGGLTKNLFNI 407
              +  SK       D+   K  ++A VP +F+R+   ++ ++      K  L K + ++
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432

Query: 408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI 467
              R+  +     F  + LE +     +   ++  +   +  ++ GG  LS      +++
Sbjct: 433 ---RK--SNNNGGFSKF-LEGITH---ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSV 483

Query: 468 CMGAPIGQAYGLTETCAGSTF----SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK 523
            +     Q YGLTET  G  F     + +  S+G  GP  P    K+ +W+   YK +D 
Sbjct: 484 LLNVNYYQGYGLTET-TGPIFVQHADDNNTESIG--GPISPNTKYKVRTWET--YKATDT 538

Query: 524 PMPRGEIVVGGFNVTAGYF 542
             P+GE+++   ++ +GYF
Sbjct: 539 L-PKGELLIKSDSIFSGYF 556

Length = 746

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score =  100 bits (251), Expect = 2e-22
 Identities = 98/451 (21%), Positives = 154/451 (34%), Gaps = 108/451 (23%)

Query: 129 EWQ--TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI- 185
           EW+  TY E   +  + A  L++ G + +    IL+   +E  +         + V  + 
Sbjct: 22  EWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVS 81

Query: 186 --YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN--------D 235
             YS L +D                      KL  +   L      ++ E+         
Sbjct: 82  PAYSLLSKD--------------------FAKLRHIFDLLT--PGAVFAEDGAAFARALA 119

Query: 236 GSEKDSG---VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLP 290
                        G       +F+ +      + VD +  +     VA  ++TSGSTGLP
Sbjct: 120 ALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLP 179

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGS 349
           K V+ TH  + A  A I    P       V + +LP  H                +  G 
Sbjct: 180 KAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF--GGNHNF---NMVLYNGG 234

Query: 350 TLTMTD---TSSKIKKGTKG--DVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL 404
           TL + D        ++  +   +VS   PT+   VP  F+ +    V  +E    L +  
Sbjct: 235 TLYIDDGKPVPGLFEETLRNLREVS---PTVYFNVPKGFEML----VDALERDAALRRRF 287

Query: 405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF 464
           F     +RL  +   ++    L + +WD +   +VR   G RI                 
Sbjct: 288 F-----KRLRLL---FYAGAALPQDVWDRLQALAVRTT-GERIPMT-------------- 324

Query: 465 INICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP 524
                        G TET   +TF  W     G +G P P   +KLV             
Sbjct: 325 ----------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV------------- 361

Query: 525 MPRG---EIVVGGFNVTAGYFNNPGKTSEVY 552
            P G   E+ V G NVT GY+ +P  T+E +
Sbjct: 362 -PNGGKLEVRVKGPNVTPGYWRDPELTAEAF 391

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 97.3 bits (243), Expect = 1e-21
 Identities = 83/434 (19%), Positives = 143/434 (32%), Gaps = 103/434 (23%)

Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           TY E+ +RA   A  L   G      R A+L E   E  +A     +     V +  +  
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
            + L   L +     L+ DS                          + + +G+   +   
Sbjct: 61  AERLAFILEDAGARLLLTDS------------------------ALASRLAGLVLPVILL 96

Query: 251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
                + ++      P D +    + +A ++YTSGSTG PKGV++TH ++V   A +   
Sbjct: 97  DPLELAALDDAPAPPPPD-APSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARR 155

Query: 311 IPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGD 367
                  D  L +  L+    V E+      L AG      + +   +   +        
Sbjct: 156 YGLDPD-DRVLQFASLSFDASVEEIFGA---LLAG-----ATLVVPPEDEERDDAALLAA 206

Query: 368 V-SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL 426
           + +    T++   P++   +                                        
Sbjct: 207 LIAEHPVTVLNLTPSLLALL---------------------------------------- 226

Query: 427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS 486
                      S+R V+       + G A   A   R+     GA +   YG TET   S
Sbjct: 227 --AAALPPALASLRLVI-------LGGEALTPALVDRWRARGPGARLINLYGPTETTVWS 277

Query: 487 TFSEWDDPSVGR-----VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVT 538
           T +  D     R     +G P+    + ++  D+       +P+P    GE+ +GG  V 
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVL--DDDL-----RPVPVGVVGELYIGGPGVA 330

Query: 539 AGYFNNPGKTSEVY 552
            GY N P  T+E +
Sbjct: 331 RGYLNRPELTAERF 344

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 80/314 (25%), Positives = 118/314 (37%), Gaps = 84/314 (26%)

Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-V 319
            G  S V    P+ + VA+I+YTSG+TG PKG  +TH N+ A AA  K  +P  G     
Sbjct: 205 GGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264

Query: 320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS------SKIKKGTKGDVSVLKP 373
            LA LP+ H     A  + LC   A+  G  L +            +KK          P
Sbjct: 265 VLAALPMFH-----AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP--------P 311

Query: 374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA 433
           T +  VP ++++    + +  EE+G                                   
Sbjct: 312 TWLPGVPPLYEK----IAEAAEERG----------------------------------- 332

Query: 434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC---AGSTFSE 490
           +            +R    G   L   +        G  + + YGLTET     G+  S 
Sbjct: 333 VDLSG--------VRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS- 383

Query: 491 WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGK 547
            DD   G VG P P   +++V  +       D+ MP    GE++V G  V  GY+N P +
Sbjct: 384 -DDRRPGYVGVPFPDTEVRIVDPE-----DPDETMPDGEEGELLVRGPQVFKGYWNRPEE 437

Query: 548 TSEVYKVNFHCVWM 561
           T++     F   W 
Sbjct: 438 TAKS----FLDGWF 447

Length = 573

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 95.4 bits (238), Expect = 6e-21
 Identities = 72/278 (25%), Positives = 110/278 (39%), Gaps = 59/278 (21%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A+I+YTSG+TG PKGV++THGN+ A A A+         SDV L  LPL HV       
Sbjct: 90  PALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLHHV-----HG 143

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP-TLMAAVPAIFDRVREGVVKKVE 395
           +     C +  G+++       +     +  + +L   T+   VP I             
Sbjct: 144 LFNALHCPLWAGASVEFL---PRFDPQERDALRLLPRITVFMGVPTI------------- 187

Query: 396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
                        Y R L   E                  F    A     +R  + G A
Sbjct: 188 -------------YTRLLEHYE------------------FDDAAAAAARNLRLFVSGSA 216

Query: 456 PLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWD 514
            L     +R+     G  + + YG+TET    +     +   G VG P+P   +++V  +
Sbjct: 217 ALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVD-E 274

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
           +GG   +   +  GEI V G NV + Y+N P  T+E +
Sbjct: 275 DGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAF 310

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 95.0 bits (237), Expect = 1e-20
 Identities = 102/445 (22%), Positives = 159/445 (35%), Gaps = 127/445 (28%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
            + +  T+ E+ +   S A  L   G     R A+L +  +E  +      +     V +
Sbjct: 24  EEKKV-TFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L  + L+  L++ +V  LI D     KL    S                        
Sbjct: 83  NTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK---------------------- 120

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN--IVAT 303
                    F+E+    K           + VA IMYTSG+TG PKGV+ T+GN    A 
Sbjct: 121 ---------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAV 171

Query: 304 AAAIKTLIPNPGRS--DVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDT--S 357
            +A+     N G +  D +LA +P+ H+  L +   S++        YG  + + +   +
Sbjct: 172 GSAL-----NLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDA 218

Query: 358 SKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
            KI K  +        T+++ V  +                                   
Sbjct: 219 EKINKLLQTG----GVTIISVVSTM----------------------------------- 239

Query: 418 GSWFGAWGLERMLWDAIVFKSVRAVLGGR-----IRFMICGGAPLSADSQRFINICM--G 470
                   L+R+L            LG        R M+ GG P        +  C   G
Sbjct: 240 --------LQRLL----------ERLGEGTYPSSFRCMLLGGGPAPKP---LLEQCKEKG 278

Query: 471 APIGQAYGLTETCAG-STFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
            P+ Q+YG+TET +   T S E     +G  G P+  C +K+    +G       P   G
Sbjct: 279 IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDG---VVVPPFEEG 333

Query: 529 EIVVGGFNVTAGYFNNPGKTSEVYK 553
           EIVV G NVT GY N    T E ++
Sbjct: 334 EIVVKGPNVTKGYLNREDATRETFQ 358

Length = 483

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 92.6 bits (231), Expect = 1e-19
 Identities = 98/450 (21%), Positives = 164/450 (36%), Gaps = 101/450 (22%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE-WFIAFQGCFRQSITVVT 184
           G +   TY E  +R  + A  L++ G + +    IL+   +E   +A        +    
Sbjct: 65  GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL-AAMYAGVPYAP 123

Query: 185 I---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG----- 236
           +   YS + +D                      KL  V   L+ +   + F +DG     
Sbjct: 124 VSPAYSLVSQD--------------------FGKLRHV---LELLTPGLVFADDGAAFAR 160

Query: 237 ---SEKDSGV-----SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGS 286
              +   + V      G +     + F+ +      + VD +  +     +A  ++TSGS
Sbjct: 161 ALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220

Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSD-VYLAYLPLAHVLELAAESIMLCAGCAI 345
           TGLPK V+ TH  + A    +    P       V + +LP  H         +   G  +
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF--GGNHNL---GIVL 275

Query: 346 GYGSTLTMTD---TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK 402
             G TL + D   T     + T  ++  + PT+   VP  +    E +V  +E    L +
Sbjct: 276 YNGGTLYIDDGKPTPGGFDE-TLRNLREISPTVYFNVPKGW----EMLVPALERDAALRR 330

Query: 403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ 462
             F        + ++  ++    L + +WD +  +   A  G RIR M            
Sbjct: 331 RFF--------SRLKLLFYAGAALSQDVWDRL-DRVAEATCGERIRMM------------ 369

Query: 463 RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSD 522
                          G+TET   +TF+       G +G P P C +KLV    GG     
Sbjct: 370 ------------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGG----- 410

Query: 523 KPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
               + E+ V G NVT GY+  P  T+E +
Sbjct: 411 ----KLEVRVKGPNVTPGYWRAPELTAEAF 436

Length = 614

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 117/428 (27%), Positives = 170/428 (39%), Gaps = 78/428 (18%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY  + +R  + ASGL   G     R AI  +  +E   A  G        V I   L  
Sbjct: 27  TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + + H L +  V  L+  S++L  L         ++ +I          S    G     
Sbjct: 87  EQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIV--GDPAHASEGHPGEE--- 141

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
            +S+ ++  LG   P  P + S   +A I+YTSGSTG PKGV+++H N+VA A ++ T +
Sbjct: 142 PASWPKLLALGDADPPHPVIDSD--MAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL 199

Query: 312 PN-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVS 369
            N P   D  LA LPL                 +  YG + LT             G   
Sbjct: 200 ENRPD--DRLLAVLPL-----------------SFDYGFNQLTTAFYV--------GATV 232

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
           VL   L+          R+ V+K +E K G+T           LAAV   W     L ++
Sbjct: 233 VLHDYLL---------PRD-VLKALE-KHGITG----------LAAVPPLWAQ---LAQL 268

Query: 430 LWDAIVFKSVR--AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
            W      S+R     GG +       A LS       N    A +   YGLTE    ST
Sbjct: 269 DWPESAAPSLRYLTNSGGAMP-----RATLSRLRSFLPN----ARLFLMYGLTEAFR-ST 318

Query: 488 F--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
           +   E  D     +G  +P   + LV  ++G      +    GE+V  G  V  GY+N+P
Sbjct: 319 YLPPEEVDRRPDSIGKAIPNAEV-LVLREDGSECAPGEE---GELVHRGALVAMGYWNDP 374

Query: 546 GKTSEVYK 553
            KT+E ++
Sbjct: 375 EKTAERFR 382

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 91.1 bits (227), Expect = 2e-19
 Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 29/201 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY----S 187
           TY E+  RA + A+ L   G   D R  +LA   +++  AF GC       V        
Sbjct: 25  TYAELDRRARAIAARLQALGAPGD-RVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRL 83

Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
                 L   L +     ++  S  L  L A  ++   +  ++   +D +   +      
Sbjct: 84  GRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAA----- 138

Query: 248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                                P     + +A + YTSGSTG PKGVM+THGN++A   AI
Sbjct: 139 -----------------DWRPPPPDP-DDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180

Query: 308 KTLIPNPGRSDVYLAYLPLAH 328
                     DV +++LPL H
Sbjct: 181 ARAFG-LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 89.2 bits (222), Expect = 9e-19
 Identities = 98/456 (21%), Positives = 164/456 (35%), Gaps = 107/456 (23%)

Query: 122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
           +   G     TY + + R    A+ L + G     R A LA         +         
Sbjct: 17  RTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAV 76

Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
           + T+   L  + + + +N  +   +  D   L  L A++  L T+K V+ +++    + S
Sbjct: 77  LHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETS 136

Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
                     V ++ E+  L + SP    P L  +N  A + YTSG+TG PKGV+ +H +
Sbjct: 137 LP-------NVYAYEEL--LEEESPEYEWPELD-ENTAAGLCYTSGTTGNPKGVVYSHRS 186

Query: 300 IV--ATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTS 357
           +V    A+A+   +     SD  L  +P+ HV               + Y +T+      
Sbjct: 187 LVLHTLASALPDSL-GLSESDTVLPVVPMFHVN-----------AWGLPYAATMVGAK-- 232

Query: 358 SKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYK 410
             +  G   D + L       K T+ A VP I+               GL   L      
Sbjct: 233 -LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW--------------LGLLNYL------ 271

Query: 411 RRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG 470
                                     ++    L    R ++ G A   +  ++      G
Sbjct: 272 --------------------------EANGKDLSSLRRVVVGGSALPRSLIEKLEE--RG 303

Query: 471 APIGQAYGLTETCAGSTFS-------EWDDPSVGRV----GPPVPCCYIKLVSWDEGGYK 519
             +  A+G+TET    T S       +  +     +    G PVP   +++V  D+ G  
Sbjct: 304 VEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV--DDEG-- 359

Query: 520 TSDKPMPR-----GEIVVGGFNVTAGYFNNPGKTSE 550
                +P      GE+VV G  VT  Y+ +P KT E
Sbjct: 360 ---NELPWDGKTVGELVVRGPWVTGSYYKDPEKTEE 392

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.2 bits (218), Expect = 2e-18
 Identities = 110/442 (24%), Positives = 172/442 (38%), Gaps = 83/442 (18%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+    D+   FA+ L   G     R AI+   C +  I + G       VV       E
Sbjct: 51  TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--------------IKNVIYFENDGS 237
             L + L+++    ++C      +++ V S+ K                KN++Y      
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKK 170

Query: 238 EKDSGVSGGISNWTVSSFSEVEK---LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
           + +  V    S  T+  ++ VEK    G   P DP    +N +A++ YT G+TG PKGVM
Sbjct: 171 QSNLVVKVSESE-TIHLWNSVEKEVNTGVEVPCDP----ENDLALLQYTGGTTGFPKGVM 225

Query: 295 ITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           +TH N+V+ T   ++ L       +V L  LP  HV                 YG T  M
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMTAVM 268

Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRL 413
                        ++S+++   M  +P  FD                 K +F    K ++
Sbjct: 269 -------------NLSIMQGYKMVLIPK-FD----------------MKMVFEAIKKHKV 298

Query: 414 AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI 473
                   GA  +   L ++ + K         IR  I G APL  + Q       G  +
Sbjct: 299 TLFP----GAPTIYIALLNSPLLKEYDI---SSIRACISGSAPLPVEVQEKFETVTGGKL 351

Query: 474 GQAYGLTET--CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIV 531
            + YGLTE+     S F  W+    G +G P P     ++S + G    +  P   GEIV
Sbjct: 352 VEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETG---EALPPGEIGEIV 407

Query: 532 VGGFNVTAGYFNNPGKTSEVYK 553
           V G  +  GY+N P +T+ V +
Sbjct: 408 VKGPQIMKGYWNKPEETAAVLQ 429

Length = 563

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 88.0 bits (219), Expect = 2e-18
 Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 18/202 (8%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS 188
           TY E+  R    A+ L   G     R AI A     W IA  G  +    VV   T Y++
Sbjct: 32  TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTA 91

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
             E A I  L       L      L    + ++ L  +++V+  E +  +  +       
Sbjct: 92  -DEAAYI--LARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMK--- 145

Query: 249 NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
                +F++    G  +   P +   + VA I++TSG+TG PKG M+TH  +++ AA   
Sbjct: 146 -----TFTDFLAAGDPAERAPEVDPDD-VADILFTSGTTGRPKGAMLTHRQLLSNAADWA 199

Query: 309 TLIP-NPGRSDVYLAYLPLAHV 329
             +    G  D YLA  P  HV
Sbjct: 200 EYLGLTEG--DRYLAANPFFHV 219

Length = 513

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 84.6 bits (210), Expect = 3e-17
 Identities = 79/313 (25%), Positives = 121/313 (38%), Gaps = 96/313 (30%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
           A I ++SGSTG PKGV++TH N++    A I+         DV+L+++PL H + L    
Sbjct: 109 AFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEIT--SEDVFLSWMPLTHDMGL---- 162

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
                   IG+  T T    +  +          +   L    P ++       + K  +
Sbjct: 163 --------IGFHLTPTALGINQYL----------MPTRLFIRRPLLW-------LDKASQ 197

Query: 397 -KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA 455
            +  +  +  N GYK  L   +      W L           SVR         +I  GA
Sbjct: 198 HRATILSSP-NFGYKYLLKHFKTEKIIDWDL----------SSVR---------LIFNGA 237

Query: 456 -PLSAD-SQRFINICMGAPIGQA-------YGLTETCAGSTFSEWDDP----SVGR---- 498
            P+SAD  + F+     AP G         YGL E     +F +  +P     + R    
Sbjct: 238 EPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLK 295

Query: 499 --------------------VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
                               VG P+  C I++V  D+ G    D+ +  G I + G NVT
Sbjct: 296 VGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIV--DDAGEVLPDRTI--GHIQIKGDNVT 351

Query: 539 AGYFNNPGKTSEV 551
           +GY+NNP  T + 
Sbjct: 352 SGYYNNPEATKKS 364

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 67/271 (24%), Positives = 98/271 (36%), Gaps = 56/271 (20%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAE 335
           +A   +T G+TG PK    +H N VA A     L    PG  DV L  LPL HV      
Sbjct: 4   LAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG--DVLLNGLPLFHVGGAIVT 61

Query: 336 SIM-LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
            +  L  G  +   +     + +  +       V   + TL++AVP +            
Sbjct: 62  GLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTV------------ 107

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
                             LAA+         L+  L DA +           +R+ + G 
Sbjct: 108 ------------------LAAL---------LQVPLGDADISS---------LRYALTGA 131

Query: 455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSW 513
           APL  +  R      G P+ + YG+TE    S  +        G VG  +P   +++   
Sbjct: 132 APLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKL 191

Query: 514 DEGGYKTSD-KPMPRGEIVVGGFNVTAGYFN 543
           D GG    D  P   G + + G NV  GY N
Sbjct: 192 DAGGALGRDCAPGEVGVLAIRGPNVFPGYLN 222

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 69/281 (24%), Positives = 105/281 (37%), Gaps = 81/281 (28%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A I++TSGSTG PK V+ T GN +A+A      +      D +L  LPL HV  LA   
Sbjct: 79  PATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVSGLA--- 134

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE 396
           I++     +  G  L + D     +   +  +     T ++ VP                
Sbjct: 135 IVM--RSLL-AGGALVLPD-KFDAEAIAE-ALENHGVTHISLVPTQ-------------- 175

Query: 397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML--WDAIVFKSVRAVLGGRIRFMICGG 454
                                        L+R+L    A    S+RAVL         GG
Sbjct: 176 -----------------------------LQRLLESLGARWLSSLRAVL--------LGG 198

Query: 455 APLSADSQRFINIC--MGAPIGQAYGLTETCAGSTFSEWDDP--SVGRVGPPVPCCYIKL 510
           AP+       +      G P+   YG+TET +     + DD    +G VG P+P   +++
Sbjct: 199 APIPPS---LLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRI 255

Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
           V+  +            GEI+V G ++  GY    G T  +
Sbjct: 256 VNPQD------------GEILVRGPSLFLGYLPQGGLTPPL 284

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 84/433 (19%), Positives = 135/433 (31%), Gaps = 98/433 (22%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
              +  TY E+  RA   A  L++ G       AILA+  +E  +A     +     V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
                 + L + L +++ T L+  +     L      L      +  ++  SE       
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQAH----LRVDDVGL----PGLALDDALSEIPDTD-- 357

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                               P+  +L     +A I+YTSGSTG PKGV I H  +     
Sbjct: 358 --------------------PIPQALLGDA-LAYIIYTSGSTGQPKGVRIEHRALANLLN 396

Query: 306 AIKTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
                       D  LA   L   A V E+      L  G  +     L   D ++    
Sbjct: 397 DAGARFGLDAD-DRVLALASLSFDASVFEIFG---ALLEGARLVLAPALLQVDPAA---- 448

Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
                +     T++  VP                                          
Sbjct: 449 -LLELLEAQGITVLLLVPL----------------------------------------- 466

Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD--SQRFINICMGAPIGQAYGLT 480
              L R+L  A +   + +    R+R ++ GG  L      +      +   +   YG T
Sbjct: 467 ---LLRLLLLAALAPDLISPC-ERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPT 522

Query: 481 ETCAGSTFSEWDDPSVGRV--GPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNV 537
           E    +           RV  G PV    + ++  D+G       P+   GE+ + G  +
Sbjct: 523 EATLDAPSFPISAELESRVPIGRPVANTQLYIL--DQGL---RPLPLGVPGELYIAGLGL 577

Query: 538 TAGYFNNPGKTSE 550
             GY N P  T+E
Sbjct: 578 ALGYLNRPDLTAE 590

Length = 642

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 82/417 (19%), Positives = 144/417 (34%), Gaps = 112/417 (26%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ ++   A   A  L   G    +R A++ +  +E  +    C      +  + + L E
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +   + L +  V  L+ DS                      E    + DS          
Sbjct: 61  NERTNQLEDLDVQLLLTDSL--------------------LEEKDFQADS---------- 90

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ---NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
                 ++++      + SL +    + +A +M+TSG+TG PK V  T  N  A+A   K
Sbjct: 91  ------LDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSK 144

Query: 309 TLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV 368
             +      D +L  LPL H+  L+   +       +  G+TL + D  +++ +    + 
Sbjct: 145 ENLGF-TEDDNWLLSLPLYHISGLSI--LFRW----LIEGATLRIVDKFNQLLEMIANE- 196

Query: 369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
              + T ++ VP                                             L R
Sbjct: 197 ---RVTHISLVPTQ-------------------------------------------LNR 210

Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGS-T 487
           +L +    +++R +L G        G+ + A          G PI  +YG+TETC+   T
Sbjct: 211 LLDEGGHNENLRKILLG--------GSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261

Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN 544
            +     +   VG P+    IK+           D     GEI+V G N+  GY   
Sbjct: 262 ATPEMLHARPDVGRPLAGREIKI---------KVDNKEGHGEIMVKGANLMKGYLYQ 309

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 85/443 (19%), Positives = 138/443 (31%), Gaps = 100/443 (22%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
              E  TYG++       A+ L + G     R AI      E  IA     R       +
Sbjct: 37  LFREL-TYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVV 95

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS---SLKTIKNVIYFENDGSEKDSG 242
              L  +A+   + +     LI D    +    ++    +   + +V+     G   D  
Sbjct: 96  SPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEA 155

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-V 301
           V         S   E E L      DP          ++YTSG+TG PKG++ +HG   V
Sbjct: 156 VE------KASEKFEFEPL---PADDP--------LFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 302 ATAAAIKT---LIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGY-GSTLTMTD 355
                 K    L+P     D +        +  L  +  S +      + Y G      +
Sbjct: 199 EHRLTAKFHGDLLPG----DRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPE 254

Query: 356 TSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR-EGVVKKVEEKGGLTKNLFNIGYKRRLA 414
              +        +   K T+    P    R+   G+ +                      
Sbjct: 255 RLWEA-------LEKYKVTIFGTSPTFLRRLMKLGLGEP--------------------- 286

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
                           +D     S+R +           G PL+ ++  +    +G  I 
Sbjct: 287 ----------------YD---LSSLRVLG--------SAGEPLNPEAFEWFYSALGVWIL 319

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVV 532
             YG TET  G   +       G  G P+P     +   D+ G      P+P   GE+VV
Sbjct: 320 DIYGQTETGMG-FIAGRPPVKNGSSGLPLPG--YAVRRVDDEG-----NPVPPGVGELVV 371

Query: 533 GGFN--VTAGYFNNPGKTSEVYK 553
                 +   Y+N+P +  E Y 
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYF 394

Length = 528

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 80.0 bits (198), Expect = 6e-16
 Identities = 40/105 (38%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 447 IRFMICGGAPLSADSQ-RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
           +R +  G APLS + Q           I Q YG+TET   +T +   D   G VG  VP 
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
              K+V  DE G   S  P  RGE+ V G  +  GY NNP  T E
Sbjct: 325 VEAKIV--DEDG-GKSLGPNERGELCVKGPQIMKGYLNNPEATKE 366

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 79.9 bits (198), Expect = 7e-16
 Identities = 79/323 (24%), Positives = 117/323 (36%), Gaps = 119/323 (36%)

Query: 266 PVDPSLP------------------SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DPS P                    + +A ++YTSGSTG PKGV ++H  +V    ++
Sbjct: 66  PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSM 125

Query: 308 KTLIPNPGRSDVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT 364
               P  G SD  LA   ++    VLEL    +          G+T+ +          T
Sbjct: 126 ARR-PGLGASDRLLAVTTISFDISVLELLLPLL---------SGATVVIASAE------T 169

Query: 365 KGDVSVL-------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVE 417
             D   L       + T+M A PA                                    
Sbjct: 170 VRDPERLARLIADERITIMQATPA------------------------------------ 193

Query: 418 GSWFGAWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAP 472
            +W       RML    W     +S+ A         +CGG  L  D ++R ++   GA 
Sbjct: 194 -TW-------RMLLAAGWRGR--ESLTA---------LCGGEALPRDLAERLLS--TGAE 232

Query: 473 IGQAYGLTETCAGSTFS--EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--- 527
           +   YG TET   ST +     D  V  +G P+    + ++  DE       +P+P    
Sbjct: 233 LWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVL--DEDL-----QPVPPGVP 284

Query: 528 GEIVVGGFNVTAGYFNNPGKTSE 550
           GE+ +GG  V  GY   P  T+E
Sbjct: 285 GELYIGGDGVARGYLGRPELTAE 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 76.4 bits (188), Expect = 1e-14
 Identities = 97/432 (22%), Positives = 160/432 (37%), Gaps = 93/432 (21%)

Query: 125 LGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVV 183
           + + E  TY ++ +     A+ L+         R AIL++  +E+ +      +     V
Sbjct: 22  ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81

Query: 184 TIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV 243
            +   L E+ LI  L ++  T L  +    K    ++ S++              K S V
Sbjct: 82  PLNIRLTENELIFQLKDSGTTVLFVE----KTFQNMALSMQ--------------KVSYV 123

Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
              IS   ++S  E+E    R   +    +++   +I YTSG+TG PKG ++T  N+   
Sbjct: 124 QRVIS---ITSLKEIED---RKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWN 177

Query: 304 AAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
           A    T   +    D  +  LPL H+  + L A   +  AG  I        T   S I+
Sbjct: 178 ALN-NTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF-AGGVIIVPRKFEPTKALSMIE 235

Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
           K         K T++  VP I   +              T NL ++              
Sbjct: 236 KH--------KVTVVMGVPTIHQALINCSKF-------ETTNLQSV-------------- 266

Query: 422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLT 480
                 R  ++                    GGAP   +  + FI+   G   GQ +G+T
Sbjct: 267 ------RWFYN--------------------GGAPCPEELMREFID--RGFLFGQGFGMT 298

Query: 481 ETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT 538
           ET         +D    VG +G PV  C  +L+  ++       +    GE+++ G NV 
Sbjct: 299 ETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKV----EVGEVGELLIRGPNVM 354

Query: 539 AGYFNNPGKTSE 550
             Y+N P  T E
Sbjct: 355 KEYWNRPDATEE 366

Length = 496

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TYGE+ +    + + L   G   + R  ++     E+  AF G  +     V I + L  
Sbjct: 32  TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D   + LN+++   L+   +  + L         +++VI            V GG     
Sbjct: 92  DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI------------VVGGAGPGA 139

Query: 252 VSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
             S+++   L   +  +   +  S + +A  +Y+SGSTG PKGV+  H +++ TA A
Sbjct: 140 -LSYAQ---LIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEA 192

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 76.6 bits (189), Expect = 1e-14
 Identities = 108/544 (19%), Positives = 183/544 (33%), Gaps = 147/544 (27%)

Query: 44  RKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGK 103
           R    K   + VE   +    I++               ++  L  +     P   +L +
Sbjct: 17  RPLNWKPPDISVERRADGSIVIKSRHPLGP------YPRSIPHLLAKWAAEAPDRPWLAQ 70

Query: 104 RKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE 163
           R+             ++ K+        TYGE      + A  L++ G +      IL+ 
Sbjct: 71  RE---------PGHGQWRKV--------TYGEAKRAVDALAQALLDLGLDPGRPVMILSG 113

Query: 164 TCVEWFIAFQGCFRQSITVVTI---YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS 220
             +E  +      +  +    +   YS +  D   H+              +LK L  + 
Sbjct: 114 NSIEHALMTLAAMQAGVPAAPVSPAYSLMSHD---HA--------------KLKHLFDL- 155

Query: 221 SSLKTIKNVIYFENDGSEKDSG-------------VSGGISNWTVSSFSEVEKLGKRSPV 267
                +K  + F   G+                  V+G        +F+++      + V
Sbjct: 156 -----VKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPTAAV 210

Query: 268 DPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGRSDVYLA 322
             ++   + + VA  ++TSGSTG+PK V+ T   + A  A  + L    P+P    V L 
Sbjct: 211 AAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP-VSLD 269

Query: 323 YLPLAHVLELAAESIMLCAGCAIGY------GSTLTMTD---TSSKIKKGTKG--DVSVL 371
           ++P  H             G    +      G TL + D        ++  +   ++S  
Sbjct: 270 WMPWNH-----------TMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS-- 316

Query: 372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLW 431
            PT+   VPA +  + E + K    +    KNL  + Y            G   L   L+
Sbjct: 317 -PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAY------------GGATLSDDLY 363

Query: 432 DAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW 491
           + +   +VR   G RI F                           YG TET   +T + W
Sbjct: 364 ERMQALAVRTT-GHRIPFY------------------------TGYGATETAPTTTGTHW 398

Query: 492 DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKT 548
           D   VG +G P+P   +KL               P G   E+ V G NVT GY  +P  T
Sbjct: 399 DTERVGLIGLPLPGVELKLA--------------PVGDKYEVRVKGPNVTPGYHKDPELT 444

Query: 549 SEVY 552
           +  +
Sbjct: 445 AAAF 448

Length = 624

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 102/457 (22%), Positives = 164/457 (35%), Gaps = 113/457 (24%)

Query: 132 TYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           TY E       FA+ L+         R A++   C+++ IA  G  R  +TVV +     
Sbjct: 52  TYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYT 111

Query: 191 EDALIHSLNETQVTTLI-----CDSKQ---------------------LKKLSAVSSSLK 224
              L H L ++  + L+       + Q                       K + V+  +K
Sbjct: 112 PRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVK 171

Query: 225 TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS 284
            +K ++         +  ++G I       F E   LG++  +       + +A + YT 
Sbjct: 172 YVKKLV--------PEYRINGAIR------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217

Query: 285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGR----SDVYLAYLPLAHVLELAAESI--M 338
           G+TG+ KG M+TH N+VA        +   G+     +V +  LPL H+  L A  +  M
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFM 277

Query: 339 LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG 398
              GC     +   M            G V  LK T   A   +                
Sbjct: 278 KIGGCNHLISNPRDM-----------PGFVKELKKTRFTAFTGV---------------- 310

Query: 399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLS 458
                LFN      L    G            +D I F S++  LGG       G A   
Sbjct: 311 ---NTLFN-----GLLNTPG------------FDQIDFSSLKMTLGG-------GMAVQR 343

Query: 459 ADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLVSWDEGG 517
           + ++R+  +  G  + +AYGLTET   +  +        G +G P+P       S D   
Sbjct: 344 SVAERWKQV-TGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIP-------STDACI 395

Query: 518 YKTSDKPMPRGEI---VVGGFNVTAGYFNNPGKTSEV 551
              +   +  GEI    + G  V  GY+  P +T++V
Sbjct: 396 KDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV 432

Length = 560

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 74.5 bits (184), Expect = 4e-14
 Identities = 106/453 (23%), Positives = 160/453 (35%), Gaps = 119/453 (26%)

Query: 127 DYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIY 186
            Y+  ++ E+  R+ + A GL   G     RA ++    +E+F      F+     V + 
Sbjct: 38  AYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVD 97

Query: 187 SSLGEDALIHSLNETQVTTLICDSK-QLKK--LSAVSSSLKTIKNVIYFENDGSEKDSGV 243
             +G   L   L E Q    I   K  L +        S++ +  V              
Sbjct: 98  PGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTV-------------- 143

Query: 244 SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
            GG   W  ++ + + + G  +P   +  + + +A I++TSGSTG PKGV+ THG   A 
Sbjct: 144 -GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQ 202

Query: 304 AAAIKTLIP-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK 362
             A++      PG  D  L   PL  +   A                 L MT        
Sbjct: 203 IEALREDYGIEPGEID--LPTFPLFALFGPA-----------------LGMT-------- 235

Query: 363 GTKGDVSVLKPTLMAAVPA------IFDRVREGVVKKVEEKGGLTKNLF-NIGYKRRLAA 415
                 SV+ P +    PA      +F  +         E+ G+T NLF +     RL  
Sbjct: 236 ------SVI-PDMDPTRPATVDPAKLFAAI---------ERYGVT-NLFGSPALLERL-- 276

Query: 416 VEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICM-GAPI 473
                 G +G        I   S+R V        I  GAP+     +RF  +    A I
Sbjct: 277 ------GRYGEAN----GIKLPSLRRV--------ISAGAPVPIAVIERFRAMLPPDAEI 318

Query: 474 GQAYGLTE-----TCAGST--FSEWDDPSVGR---VGPPVPCCYIKLV--------SWDE 515
              YG TE     +       F+       G    VG PV    ++++         WD+
Sbjct: 319 LTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDD 378

Query: 516 GGYKTSDKPMPR---GEIVVGGFNVTAGYFNNP 545
                    +     GEIVV G  VT  Y+N P
Sbjct: 379 ------ALRLATGEIGEIVVAGPMVTRSYYNRP 405

Length = 552

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 74.2 bits (183), Expect = 5e-14
 Identities = 57/228 (25%), Positives = 86/228 (37%), Gaps = 28/228 (12%)

Query: 110 DFVTASDGRKFEK--LHLGDYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCV 166
           D +  S  R  +K  L  GD  W TY E  D A +  A+ L++ G     R A L     
Sbjct: 15  DILRRSARRYPDKTALVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72

Query: 167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI 226
            + + +  C R     V +   L  + L + L+ +     + D        A  + L   
Sbjct: 73  AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP-- 130

Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
             V               GG   W    F++  + G  +  D  L   + +A I+YTSG+
Sbjct: 131 --VDTLILSLVLGGREAPGG---WL--DFADWAEAGSVAEPDVELADDD-LAQILYTSGT 182

Query: 287 TGLPKGVMITHGNIVA------TAAAIKTLIPNPGRSDVYLAYLPLAH 328
             LPKG M+TH  ++A       A  +          D+ L  LPL H
Sbjct: 183 ESLPKGAMLTHRALIAEYVSCIVAGDMSA-------DDIPLHALPLYH 223

Length = 523

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 82/301 (27%), Positives = 114/301 (37%), Gaps = 75/301 (24%)

Query: 261 LGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI----KTLIPNPGR 316
                 V   +  Q+ VA IMY+SG+TG  KGV++TH N++A          +    PG 
Sbjct: 184 KEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGS 243

Query: 317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSKIKKGTKGDVS---V 370
            +VYLA LP+ H+  L+   + L     +  GST+ +    D S  +K   +  V+   V
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGL-----LSLGSTIVVMRRFDASDMVKVIDRFKVTHFPV 298

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
           + P LMA            + KK +   G                               
Sbjct: 299 VPPILMA------------LTKKAKGVCGE------------------------------ 316

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGST-- 487
               V KS++ V         CG APLS    Q F+         Q YG+TE+ A  T  
Sbjct: 317 ----VLKSLKQV--------SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRG 364

Query: 488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK 547
           F+         VG   P    K+V W  G       P   GE+ + G  V  GY NNP  
Sbjct: 365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKA 421

Query: 548 T 548
           T
Sbjct: 422 T 422

Length = 560

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 79/319 (24%), Positives = 117/319 (36%), Gaps = 76/319 (23%)

Query: 253 SSFSEVEKLGKRSPVDPSLP---SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
           +SF   E L +R+     L    + +   +I +TSG+TG PKGV I+H  ++  + A K 
Sbjct: 147 NSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLA-KI 205

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG-CAIGYGSTLTMTDTSSKIKKGTKGDV 368
            I   G  DVYL   PL H+  L++   ML  G C +     L   D  + ++   + +V
Sbjct: 206 AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHV----LLPKFDAKAALQAIKQHNV 261

Query: 369 SVLKPTLMAAVPAIF-DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
                T M  VPA+  D +                          L     +W       
Sbjct: 262 -----TSMITVPAMMADLI-------------------------SLTRKSMTWKV----- 286

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST 487
                   F SVR +L G       GG+  S        +   A +  AYG+TE C+  T
Sbjct: 287 --------FPSVRKILNG-------GGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLT 331

Query: 488 FSEWDDPSV---------------GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
           F    DP++                 V  P   C  K     E      D+    G I+ 
Sbjct: 332 FMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIG-LDESSRVGRILT 390

Query: 533 GGFNVTAGYFNNPGKTSEV 551
            G +V  GY+    +T+ V
Sbjct: 391 RGPHVMLGYWGQNSETASV 409

Length = 563

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 73.0 bits (180), Expect = 3e-13
 Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 181 TVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA--VSSSLKTIKNVIYFENDGSE 238
             V +  +  E AL  ++ + Q+ T+I   K L+KL        L     VIY E D   
Sbjct: 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKA 749

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
           K S V   ++    +       L +              A I+++SGS G PKGVM++H 
Sbjct: 750 KISKVDK-LTALLAARLLPARLLKRLYGPTFKPDD---TATIIFSSGSEGEPKGVMLSHH 805

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM-LCAGC 343
           NI++    I  +  N    DV L+ LP  H   L     + L  G 
Sbjct: 806 NILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI 850

Length = 1146

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 44/258 (17%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           + G +++A  ++Q+ ++ P            K  V  + G  +           TY  + 
Sbjct: 19  YWGDASLADYWQQTARAMPD-----------KIAVVDNHGASY-----------TYSALD 56

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
             A   A+ L+  G     R A       E+ I +  C +     V +  S  E  L+  
Sbjct: 57  HAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWV 116

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
           LN+ Q            ++ +  +  + + L  ++ ++  +                   
Sbjct: 117 LNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-------------T 163

Query: 253 SSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL 310
           SS S  + +    P+  ++    + +A +++TSG+ GLPKGVM+TH NI+A+  A    L
Sbjct: 164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL 223

Query: 311 IPNPGRSDVYLAYLPLAH 328
             N    DV++   PL H
Sbjct: 224 --NLTWQDVFMMPAPLGH 239

Length = 547

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)

Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
           +Y E+ + A   A  L    G     R  +  +   ++ IA+    R +  VV +     
Sbjct: 37  SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI------YFENDGSEK----- 239
           E+ L H + ++     I  S+   K++    +L  +++VI      Y   +         
Sbjct: 97  EEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWL 155

Query: 240 ------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGV 293
                  +   GG+  W        E L       P     + +AV+ YTSG+TG+PKG 
Sbjct: 156 RAEPPLQALAPGGVVAWK-------EALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGC 208

Query: 294 MITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL 330
           M TH  ++A A     L  N     V LA LPL HV 
Sbjct: 209 MHTHRTVMANAVG-SVLWSNSTPESVVLAVLPLFHVT 244

Length = 546

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 68.2 bits (168), Expect = 3e-12
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 25/98 (25%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DP+ P++                  + +A ++YTSGSTG PKGVM+ H  +V   A +
Sbjct: 66  PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125

Query: 308 KTLIPNPGRSDVYLAYLPL---AHVLELAAESIMLCAG 342
           +         D  L +      A V E+      L +G
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFP---PLLSG 159

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 83/311 (26%), Positives = 124/311 (39%), Gaps = 76/311 (24%)

Query: 254 SFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT---AAAIKT 309
           SF      G+R   V P L     +A + YT G+TG+ KG M+TH N++A    A A   
Sbjct: 185 SFRSALHKGRRMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG 243

Query: 310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
            + +PG+  V  A LPL H+  L    ++                     I+ G +    
Sbjct: 244 PLLHPGKELVVTA-LPLYHIFALTVNCLLF--------------------IELGGQN--- 279

Query: 370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG--SWFGAWGLE 427
                L+   P    R   G VK+++              K    A+ G  + F A  L 
Sbjct: 280 -----LLITNP----RDIPGFVKELK--------------KYPFTAITGVNTLFNAL-LN 315

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE-----T 482
              +  + F S++  +GG       G A   A ++R++ +  G  + + YGLTE     +
Sbjct: 316 NEEFQELDFSSLKLSVGG-------GMAVQQAVAERWVKL-TGQYLLEGYGLTECSPLVS 367

Query: 483 CAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF 542
                   +     G +G PVP   IKLV  D+G      +P   GE+ V G  V  GY+
Sbjct: 368 VNPYDLDYYS----GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYW 419

Query: 543 NNPGKTSEVYK 553
             P  T EV K
Sbjct: 420 QRPEATDEVIK 430

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 256 SEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
             +E+L    P  P  P++ +  A+++ TSGSTG+PK V++TH NI+A +A     +   
Sbjct: 147 LAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAG-TVQVNGF 205

Query: 315 GRSDVYLAYLPLAHVLELAAESIM-LCAGCA 344
              DV L ++PL HV  +    +  +  GC 
Sbjct: 206 TPDDVSLNWMPLDHVGGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 79/424 (18%), Positives = 142/424 (33%), Gaps = 85/424 (20%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +++ + A GL+  G       A+LA     + +A     +    ++ + +    
Sbjct: 76  TYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSG 135

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L        V  L+ D +    LSA+   L  ++      +D     S         T
Sbjct: 136 PQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGS---------T 186

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
             +  ++      +P     P + G  VI+ TSG+TG PKG      + +A  A + + +
Sbjct: 187 DETLDDLIAGSSTAP--LPKPPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLSRV 243

Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK-KGTKGDVSV 370
           P        L   P+ H    A          A+  GST+ +     +   + T  D++ 
Sbjct: 244 PFRAGETTLLP-APMFHATGWA------HLTLAMALGSTVVL---RRRFDPEATLEDIAK 293

Query: 371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T +  VP +  R+ + +  +V  K   +                             
Sbjct: 294 HKATALVVVPVMLSRILD-LGPEVLAKYDTS----------------------------- 323

Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE--TCAGST 487
                           ++ +   G+ LS + + R +    G  +   YG TE      +T
Sbjct: 324 ---------------SLKIIFVSGSALSPELATRALEA-FGPVLYNLYGSTEVAFATIAT 367

Query: 488 FSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFN 543
             +  + P    VG P     +K+          +   +PRG    I VG      GY +
Sbjct: 368 PEDLAEAPGT--VGRPPKGVTVKI-------LDENGNEVPRGVVGRIFVGNGFPFEGYTD 418

Query: 544 NPGK 547
              K
Sbjct: 419 GRDK 422

Length = 549

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 10/203 (4%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ + +  FA+ L   G     R A+    C ++ I F G  +     V +     E
Sbjct: 60  TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSS--SLKTIKNVIYFENDGSEKDSGVSGGISN 249
             L + LN+     L+   +    +  V +  SL+ +      +   +E    +   +  
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRA 179

Query: 250 WTVSS------FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT 303
             +++         +       P+ P  P+ + +A + YT G+TG+PKG   T  ++V T
Sbjct: 180 PRLAAAGAIDLLPALRACTAPVPLPP--PALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237

Query: 304 AAAIKTLIPNPGRSDVYLAYLPL 326
           AAA   +    G   V+L++LP 
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 64.2 bits (157), Expect = 9e-11
 Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 46/231 (19%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVT---IYSS 188
           TY +V   +   A+GL   G        +L   C E+ +AF G  R+     T    Y+ 
Sbjct: 52  TYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTP 111

Query: 189 LGEDALIHS-LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK----DSGV 243
               A I      +    +I  S  + KL                  D        D   
Sbjct: 112 ----AEIAKQAKASGAKLIITQSCYVDKLKG-------------LAEDDGVTVVTIDDPP 154

Query: 244 SGGISNWTVSSFSEVEKLGKR-SPVDP-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
            G +    ++   E E      SP D  +LP         Y+SG+TGLPKGVM+TH  +V
Sbjct: 155 EGCLHFSELTQADENELPEVEISPDDVVALP---------YSSGTTGLPKGVMLTHKGLV 205

Query: 302 ATAAAIKTLIPNP----GRSDVYLAYLPLAHVLELAAESIMLC---AGCAI 345
            T+ A +    NP       DV L  LP+ H+  L   S++LC    G AI
Sbjct: 206 -TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSL--NSVLLCGLRVGAAI 253

Length = 537

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 53/198 (26%), Positives = 67/198 (33%), Gaps = 63/198 (31%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +     A  L   G     R A+  +   ++ IA+    R    VV +     E
Sbjct: 3   TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNRE 62

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L H L                                         DSG    I    
Sbjct: 63  AELEHIL----------------------------------------NDSGARVLIV--- 79

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
               SE++                 VAVI YTSG+TGLPKG M TH  ++ATAAA     
Sbjct: 80  ---GSELDD----------------VAVIPYTSGTTGLPKGCMHTHRTVLATAAASA-AW 119

Query: 312 PNPGRSDVYLAYLPLAHV 329
                  V LA+LPL HV
Sbjct: 120 SGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 63.8 bits (156), Expect = 2e-10
 Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 28/160 (17%)

Query: 188 SLGEDALIHSLNETQVTTLICDSKQL---KKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
           S G   ++ +    QV T +  S+      +L  +  +L+    +IY E+        V 
Sbjct: 715 SAGIANILSACKAAQVKT-VLTSRAFIEKARLGPLIEALEFGIRIIYLED--------VR 765

Query: 245 GGISNWT------VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
             I             F  V     R P DP        AVI++TSGS G PKGV+++H 
Sbjct: 766 AQIGLADKIKGLLAGRFPLV-YFCNRDPDDP--------AVILFTSGSEGTPKGVVLSHR 816

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIM 338
           N++A  A +   I      D     LP+ H   L    ++
Sbjct: 817 NLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVL 855

Length = 1140

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 77/393 (19%), Positives = 144/393 (36%), Gaps = 69/393 (17%)

Query: 77  PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEV 136
           P  G  ++  ++E+S   H   R LG+                      G+ EW TYG V
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS------------------ESGESEWLTYGTV 463

Query: 137 FDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIH 196
             RA    SGL+  G        +  E      I    C     T + +   +G+ + + 
Sbjct: 464 DARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMR 520

Query: 197 SL-NETQVTTLICDSKQLKK-LSAVSSSLKTIKNVIYF---ENDGSEKDSGVSGGISNWT 251
           +L +E ++  +  D   +   L+  S  L+T+     F   ++    +D  +       T
Sbjct: 521 TLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNI-------T 573

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMY-----TSGSTGLPKGVMITHGNIVATAAA 306
           +  +  VE+ G+  PV P         V  Y     TS S      V +TH +++     
Sbjct: 574 LIPYEFVEQKGRLCPV-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVL---RD 629

Query: 307 IKTLI-----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK 361
           I TL+     P+  +  + + + P A +         +       +GS +   D +   +
Sbjct: 630 ISTLVMTGVLPSSFKKHLMVHFTPFAMLFN------RVFVLGLFAHGSAVATVDAAHLQR 683

Query: 362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF 421
              K      +PT++ A P++F   R  + +  E    +   LF   ++ R   +     
Sbjct: 684 AFVK-----FQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLIN---- 734

Query: 422 GAWGLER---MLWDAIVFKSVRAVLGGRIRFMI 451
               + R    L   I F++ + +LGG +  ++
Sbjct: 735 ----IHRRDSSLLRFIFFRATQELLGGCVEKIV 763

Length = 1452

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 23/226 (10%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L  G   W TY E    A + A  L   G     R A++    +E+   F GC       
Sbjct: 40  LVFGGTRW-TYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIA 98

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V I ++L    L H L  +    L+ ++  L  L A       +  V             
Sbjct: 99  VPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVW------------ 146

Query: 243 VSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI- 300
           +    ++ +V + +S        +P   +       A I+YTSG+TG  KGV   H    
Sbjct: 147 LLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFY 206

Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGC 343
                +A  ++      G  DV    LPL H   L A    L AG 
Sbjct: 207 WWGRNSAEDLEI-----GADDVLYTTLPLFHTNALNAFFQALLAGA 247

Length = 542

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 62.2 bits (152), Expect = 4e-10
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 24/198 (12%)

Query: 159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSA 218
           A+L E   E+  A+ G  +    V  + +      L HSLN      LI   + ++    
Sbjct: 91  ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEE 150

Query: 219 VSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGV- 277
             + L      ++     +  D              + ++      +P      S++GV 
Sbjct: 151 ARADL-ARPPRLWVAGGDTLDDPE-----------GYEDLAAAAAGAPTTN-PASRSGVT 197

Query: 278 ----AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA 333
               A  +YTSG+TGLPK  +++H   +        L+      DV    LPL H     
Sbjct: 198 AKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYH----- 251

Query: 334 AESIMLCAGCAIGYGSTL 351
                +     +  G+TL
Sbjct: 252 NTGGTVAWSSVLAAGATL 269

Length = 600

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
           +A I+YTSGSTG PKGVM++H N+ A A +I   +      D  LA LP + 
Sbjct: 4   LAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLEL-TEDDRILAVLPFSF 54

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.1 bits (151), Expect = 4e-10
 Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 58/273 (21%)

Query: 82  STMAALFEQSCKSHPQDRFLGKRKL--LGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDR 139
             + A+ +QSC+     RF  K     LGK                      TYGE++  
Sbjct: 24  PNIQAVLKQSCQ-----RFADKPAFSNLGKTL--------------------TYGELYKL 58

Query: 140 ACSFASGLVNFGHNVD----TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALI 195
           + +FA+ L     + D     R A+     +++ +A  G  R  + VV          + 
Sbjct: 59  SGAFAAWL---QQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREME 115

Query: 196 HSLNETQVTTLICDSKQLKKLSAVSSSLKT-IKNVIYFENDGSEKDSGVSGGISNWTVS- 253
           H  N++    L+C +        V    KT +K+VI  E   ++    +   + N  V  
Sbjct: 116 HQFNDSGAKALVCLANMAHLAEKVLP--KTGVKHVIVTEV--ADMLPPLKRLLINAVVKH 171

Query: 254 --------------SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN 299
                          F++    G   PV  + P  + VAV+ YT G+TG+ KG M+TH N
Sbjct: 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRN 231

Query: 300 IVATAAAIKTLIP---NPGRSDVYLAYLPLAHV 329
           +VA     + L+    N G  ++ +A LPL H+
Sbjct: 232 LVANMLQCRALMGSNLNEGC-EILIAPLPLYHI 263

Length = 562

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 40/114 (35%), Positives = 55/114 (48%), Gaps = 15/114 (13%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV---GRVGPP 502
           R+RF+    APL       +    G P+ +AYG+TE  A    S    P V   G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYK 553
                + ++  D+ G     +P+P    GEIV+ G NVTAGY NNP    E ++
Sbjct: 178 A-GVEVAIL--DDDG-----RPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFR 223

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI-KTLIPNPGRSDVYLAYLPLAHVLELA 333
           +  A+I++TSG+TG PKGV +TH N++A+A  I K+    P  SD  L  +PL H+  L 
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP--SDRCLNVMPLFHIHGLI 59

Query: 334 AESIM--LCAGCAI 345
             S++  L AG ++
Sbjct: 60  V-SLLATLLAGGSV 72

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 60.7 bits (148), Expect = 9e-10
 Identities = 68/280 (24%), Positives = 107/280 (38%), Gaps = 64/280 (22%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGN--IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA 334
           VA+   + G+TGLPK +  TH +    A A+A    + +PG   VYLA LP AH   L++
Sbjct: 141 VALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGL-DPG--TVYLAVLPAAHNFTLSS 197

Query: 335 ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV 394
             ++     A+  G T+ +                   P+   A P I    RE V    
Sbjct: 198 PGLL----GALLAGGTVVLHHP----------------PSPDVAFPLI---EREKVT--- 231

Query: 395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG 454
                               A+  +    W LE   WD     S+R +          GG
Sbjct: 232 ------------------HTALVPALLNLW-LEAAEWDQADLSSLRVIQ--------VGG 264

Query: 455 APLSADSQRFINICMGAPIGQAYGLTE-TCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVS 512
           APLS +  R +   +G P+ Q +G+ E     +   +  D  +   G P+ P   I++V 
Sbjct: 265 APLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIV- 323

Query: 513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
            D+ G       +  GE++  G     GY+  P   +  +
Sbjct: 324 -DDQGEPVPPGEV--GELLTRGPYTIRGYYRAPEHNARAF 360

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 18/173 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI---YSS 188
           TY E+ +RA   A  L+  G        I A   +E+  A  G F+     V +   Y  
Sbjct: 30  TYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV- 88

Query: 189 LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS 248
             ED L + L+++    L+ + +   +++ V   L  ++ ++  E DGS  D    G + 
Sbjct: 89  --EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVE-DGSGNDLL-PGAVD 144

Query: 249 NWTVSSFSEVEKL-GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
                +    E+  G+RSP D           ++YT G+TG+PKGVM    +I
Sbjct: 145 YEDALAAGSPERDFGERSPDD---------LYLLYTGGTTGMPKGVMWRQEDI 188

Length = 533

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 19/79 (24%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           P+DPS P++                  + +A I++TSGSTG PKGV I+H N+ +    +
Sbjct: 70  PLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWM 129

Query: 308 KTLIPNPGRSDVYLAYLPL 326
                     DV+    P 
Sbjct: 130 VEDFDLTEG-DVFSNQAPF 147

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 17/207 (8%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           GD  + TY E +DR    AS L   G       A+LA        A  G       +V +
Sbjct: 26  GDRRY-TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPL 84

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L  D +   LN ++   L  D + L       + L T K +I  E       +  S 
Sbjct: 85  NTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143

Query: 246 GISNWTVSSFSEVEKL---GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIV 301
                      + E L   G   P+      +     + YTSG+TG PKGV+ TH G  +
Sbjct: 144 EG---------DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYL 194

Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAH 328
                +  +        VYL  LP+ H
Sbjct: 195 NALGNV--IEWGMPDRPVYLWTLPMFH 219

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 41/72 (56%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
            V  L    P+DP    ++ +A++  TSGSTG PK V ITHGN+ A A A+         
Sbjct: 134 TVADLLAADPIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVE 193

Query: 317 SDVYLAYLPLAH 328
           +DV +++LPL H
Sbjct: 194 TDVMVSWLPLFH 205

Length = 545

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 16/174 (9%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +YGE+  +     + L   G   + R  +L    V++ IAF G  R  I  V + + L  
Sbjct: 32  SYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTA 91

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D   + L +++   +    + L  + A       +++ +            V G      
Sbjct: 92  DDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV------------VVGRPEAGE 139

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
           V      E L   S       +Q +  A  +Y+SGSTG+PKGV+ TH N   TA
Sbjct: 140 VQL---AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 58.2 bits (142), Expect = 5e-09
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 21/116 (18%)

Query: 446 RIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF-------SEWDDPSVG 497
            +R +I GG  L A+  +R+  +  GA +  AYG TET    T+        +     +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE 550
           R   P+    + ++  DE       +P+P    GE+ +GG  V  GY N P  T+E
Sbjct: 269 R---PIANTRVYVL--DEDL-----RPVPVGVPGELYIGGAGVARGYLNRPELTAE 314

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN 313
            F +  + G+   + P     + +AV+ YT G+TGL KG M+THGN+VA    ++  +  
Sbjct: 186 PFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 314 PGR---------SDVYLAYLPLAHVLELAAESI-MLCAG 342
            G           +V +A LPL H+    A  + M+ +G
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSG 284

Length = 562

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 59.2 bits (143), Expect = 5e-09
 Identities = 81/432 (18%), Positives = 134/432 (31%), Gaps = 106/432 (24%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L   G   + R AI AE   E  +A     +     V +  +   
Sbjct: 2030 SYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPA 2089

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + L ++    L+     L++L                          +  G++   
Sbjct: 2090 ERLAYMLEDSGAALLLTQRHLLERLP-------------------------LPAGVARLP 2124

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG----NIVATAAAI 307
            +   +E       +P    L  +N +A ++YTSGSTGLPKGV ++HG    +  A     
Sbjct: 2125 LDRDAEWADYPDTAP-AVQLAGEN-LAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY 2182

Query: 308  KTLIPNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTK 365
            +        +D  L ++  +   + A E     L  G        + + D      +   
Sbjct: 2183 EL-----SPADCELQFMSFS--FDGAHEQWFHPLLNGAR------VLIRDDELWDPEQLY 2229

Query: 366  GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
             ++     T++   P    ++ E       E+ G    +      R         FG   
Sbjct: 2230 DEMERHGVTILDFPPVYLQQLAE-----HAERDGRPPAV------RVYC------FGG-- 2270

Query: 426  LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
                  +A+   S+R                         N          YG TE    
Sbjct: 2271 ------EAVPAASLRLAWEA-------------LRPVYLFN---------GYGPTEAVVT 2302

Query: 486  STF--SEWDDPSVGRVGPPVPCCYIKLVSWDEGGY--KTSDKPMPR---GEIVVGGFNVT 538
                     DP  G    P     I     +   Y        +     GE+ +GG  + 
Sbjct: 2303 PLLWKCRPQDPC-GAAYVP-----IGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLA 2356

Query: 539  AGYFNNPGKTSE 550
             GY N PG T+E
Sbjct: 2357 RGYLNRPGLTAE 2368

Length = 5163

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 58.3 bits (142), Expect = 7e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 18/85 (21%)

Query: 476 AYGLTETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-- 527
           AYG+TET   ST +  DDP      +VGR  P +    +K+V  + G      + +PR  
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLE---VKIVDPETG------ETVPRGE 397

Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEV 551
            GE+   G++V  GY+N+P KT+E 
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA 422

Length = 559

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 57.9 bits (141), Expect = 8e-09
 Identities = 38/170 (22%), Positives = 54/170 (31%), Gaps = 30/170 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +RA   A  L   G       A+L E   E  +A     +     V +  +   
Sbjct: 14  TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L   L ++    L+   + L  L+        I        D                
Sbjct: 74  ERLAFMLEDSGARVLL-TDESLAPLARADQLPLVILEEELDAEDAGPP------------ 120

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
                          VD         A +MYTSGSTG PKGV + H  +V
Sbjct: 121 ------------APAVDADDL-----AYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 60/288 (20%), Positives = 93/288 (32%), Gaps = 79/288 (27%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPG-----RSDVYLAYLPLAHV 329
           +A  +YTSG+TG PKGVM  H + +  A A   + L   PG      S ++ AY  L + 
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLGNS 151

Query: 330 LELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG 389
           L       +     A+      T       + +         +PT++  VPA++  + E 
Sbjct: 152 LLFP----LFSGASAVLLPGWPTPEAVLDLLAR--------HRPTVLFGVPALYRALLES 199

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                   G  +  L                               F+SVR         
Sbjct: 200 --------GAGSAPL-------------------------------FRSVRLC------- 213

Query: 450 MICGGAPLSADSQRFINICMGAPIGQAYGLTET----CAGSTFSEWDDPSVGRVGPPVPC 505
            +  G  L A          G  I    G TE      + +        + GR  P    
Sbjct: 214 -VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFIS-NRPGAARPGTTGRPVPGYEA 271

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
               LV  + G    +      G++ V G ++  GY+N P KT    +
Sbjct: 272 R---LVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR 312

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 32/215 (14%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L LGD    TYG++ DR   +       G       A+L+    E  +A        +  
Sbjct: 31  LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89

Query: 183 VTIY--SSLGEDALIHSLNETQVTTLICDSKQLKK----LSAVSSSLKTIKNVIYFENDG 236
             ++   SL + A +  L +  ++TLI D     +    L A   SLK +          
Sbjct: 90  TALHPLGSLDDHAYV--LEDAGISTLIVDPAPFVERALALLARVPSLKHV---------- 137

Query: 237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
                 ++ G     V   +   K G    V  +LP    +A + YT G+TG PKGVM T
Sbjct: 138 ------LTLGPVPDGVDLLAAAAKFGPAPLVAAALPPD--IAGLAYTGGTTGKPKGVMGT 189

Query: 297 HGNIVATAAAIKTL--IPNPGRSDVYLAYLPLAHV 329
           H +I   A         P   R   +L   PL+H 
Sbjct: 190 HRSIATMAQIQLAEWEWPADPR---FLMCTPLSHA 221

Length = 524

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 57.9 bits (140), Expect = 9e-09
 Identities = 47/204 (23%), Positives = 68/204 (33%), Gaps = 44/204 (21%)

Query: 128 YEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
           Y W+   +  DR    A GL+  G     R  I A  C EW +      R    +V I  
Sbjct: 46  YTWRQLADAVDR---LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102

Query: 188 SLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT-------------IKNV 229
           +     L ++L ++ V  +IC      S     L  +   L               ++ V
Sbjct: 103 AYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGV 162

Query: 230 IYFENDGSEKDSGVSGGISNW--------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM 281
           +               G   W        TVS  +  E+       DP          I 
Sbjct: 163 VSL-------APAPPPGFLAWHELQARGETVSREALAERQASLDRDDP--------INIQ 207

Query: 282 YTSGSTGLPKGVMITHGNIVATAA 305
           YTSG+TG PKG  ++H NI+    
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGY 231

Length = 558

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 94/408 (23%), Positives = 141/408 (34%), Gaps = 115/408 (28%)

Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL 216
           R A+  +  ++W IA   C +  I  + I          H LN+     LI D       
Sbjct: 26  RIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLISDDPDA--A 83

Query: 217 SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG 276
           SA+ +   T+   +Y                               + S     LP+  G
Sbjct: 84  SALHTPFATLGEDLYIAL----------------------------RPSANPVELPA--G 113

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLE-LAAE 335
            A I YTSGSTG PKGV ++   +   A ++   I      + +L  LPLA +LE +A  
Sbjct: 114 TAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI-AILEPERHLCLLPLATLLENIAGV 172

Query: 336 SIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK 393
              L  G    +   + L ++ +S          +S  +P  +  VP             
Sbjct: 173 YAPLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQ------------ 220

Query: 394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR--AVLGGRIRFMI 451
                 L   L        +AAVE       G           +S+R  AV G R+    
Sbjct: 221 ------LLMAL--------VAAVEQ------GPLP-------PESLRFVAVGGARV---- 249

Query: 452 CGGAPL--SADSQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSVGRVGPPVPC 505
                L   A +       +G P+ + YGL+E CA S  S      D P  G VG P+P 
Sbjct: 250 --SPSLLQRARA-------LGLPVYEGYGLSE-CA-SVVSLNTPGADRP--GSVGKPLPH 296

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
             + +                 GEI+V G ++  GY   P  T + + 
Sbjct: 297 VQVSIA--------------NDGEILVRG-SLMLGYLGEPPATDDWWA 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 57.2 bits (139), Expect = 1e-08
 Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 449 FMICG----GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR-----V 499
           F+ CG         A  +RF N    A I   YG TE     T  E     + R     +
Sbjct: 219 FLFCGEVLPKKLAKALRRRFPN----ARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPI 274

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
           G P P     ++  DE G      P   GE+V+ G  V+ GY NNP KT++ 
Sbjct: 275 GYPKPGLRALIL--DEDG--RPVPPGEEGELVIAGPQVSPGYLNNPEKTAKA 322

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESI 337
           I+YTSG+TG PKGV++TH  ++  A     L+      DV L  LPL H+     +  + 
Sbjct: 86  ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPD-DVLLTPLPLFHINAQAYSVYAA 144

Query: 338 MLCAGCAI 345
           +L     +
Sbjct: 145 LLVGATLV 152

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
           VA+++YTSG+TG PKGVM TH  ++A   +    +      DV L   PLAH+
Sbjct: 95  VALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL-GLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCC 506
           R+ +CG APL  +  R      G  I + YGLTE    S+ +  D    +G VG  +P  
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 507 YIKLVSWDEGGYKTSDKPMPR-GEIVVGGFNVTAGYFN 543
            +++V  D+ G    D  +   G + + G NV +GY  
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLE 433

Length = 632

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 6/63 (9%)

Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLP 325
           P+L   + +A + YTSGST LPKGV ++HGN+VA    I+    +  NP   DV +++LP
Sbjct: 161 PALQPDD-IAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNP--DDVIVSWLP 217

Query: 326 LAH 328
           L H
Sbjct: 218 LYH 220

Length = 4334

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 56.4 bits (137), Expect = 3e-08
 Identities = 54/206 (26%), Positives = 77/206 (37%), Gaps = 52/206 (25%)

Query: 127 DYEWQTYGEVFDRACS-FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT---- 181
              W TY E F+      A GL+  G     R  I A    EW         Q  T    
Sbjct: 41  GLRW-TYRE-FNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW------VLTQFATAKIG 92

Query: 182 --VVTIYSSLGEDALIHSLNETQVTTLIC-----DSKQLKKLSAVSSSLKT--------- 225
             +VTI  +     L ++LN++    LI      DS  +  L  ++  L T         
Sbjct: 93  AILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSA 152

Query: 226 ----IKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP------SLPSQN 275
               ++ VI+    G EK  G+          +F E+  LG+            +L   +
Sbjct: 153 RLPELRRVIFL---GDEKHPGML---------NFDELLALGRAVDDAELAARQATL-DPD 199

Query: 276 GVAVIMYTSGSTGLPKGVMITHGNIV 301
               I YTSG+TG PKG  +TH NI+
Sbjct: 200 DPINIQYTSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 56.0 bits (136), Expect = 3e-08
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVP 504
            +R  I G APL A++ R      G  I + YG+TET   +T + +D     G VG P+P
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNM-NTSNPYDGERRAGTVGFPLP 328

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSE 550
              +++   + G        +P GE   I V G NV  GY+  P KT+E
Sbjct: 329 GVSLRVTDPETG------AELPPGEIGMIEVKGPNVFKGYWRMPEKTAE 371

Length = 504

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 23/88 (26%)

Query: 266 PVDPSLPSQ-------------------NGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
           P+DPS P +                   +  A ++YTSGSTG PKGV+ITH NI     A
Sbjct: 71  PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130

Query: 307 IKTLIPNPGRSDVYLAYLPLA---HVLE 331
              ++      D  L +  +A    +LE
Sbjct: 131 EGAILGI-RPGDRVLQFASIAFDVSILE 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.6 bits (134), Expect = 7e-08
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E+  +A   A  L+  G   D    I  E  +E  +      +     V +     +
Sbjct: 539 SYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQ 598

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D L + L+++ V  L+  S  L +L  V + L+++           E    + G      
Sbjct: 599 DRLAYMLDDSGVRLLLTQSHLLAQLP-VPAGLRSL--------CLDEPADLLCG------ 643

Query: 252 VSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
                        S  +P +    + +A ++YTSGSTG PKGV I+HG +      I
Sbjct: 644 ------------YSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVI 688

Length = 3956

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-GRVGPPVPCCYIKLV 511
           GGAPL  +   F     G  +   +G+TETC+  T    + P   G +G  +P   + +V
Sbjct: 320 GGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVV 379

Query: 512 SWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVY 552
           S D+       K +P GE   + + G NVT GY+N P +++E +
Sbjct: 380 SLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF 418

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
            GGA L       +    G    + YGLTET   + F+  D P    +G PV     +++
Sbjct: 206 GGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVI 265

Query: 512 SWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVYK 553
             + G      + +P    GEIVV G  V  GY+N P  T+E + 
Sbjct: 266 DPETG------EELPPGEEGEIVVRGPQVFKGYWNRPEATAESFI 304

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 52.2 bits (126), Expect = 5e-07
 Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 29/183 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+    C FA+ L + G     R AI      E  IA   C R       ++     
Sbjct: 90  TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149

Query: 192 DALIHSLNETQVTTLICDSKQ--------LKKL--SAVSSSLKTIKNVIYFENDGSEKDS 241
           +AL   +N+     +I   +         LK +   A+     ++++V+     G+    
Sbjct: 150 EALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208

Query: 242 GVSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
               G   W        S++ E E +      DP          I+YTSGSTG PKGV+ 
Sbjct: 209 -WVEGRDVWWHDLMAKASAYCEPEPMD---SEDPLF--------ILYTSGSTGKPKGVLH 256

Query: 296 THG 298
           T G
Sbjct: 257 TTG 259

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 18/55 (32%)

Query: 266 PVDPSLPSQ------------------NGVAVIMYTSGSTGLPKGVMITHGNIVA 302
           P+DP+ P +                  + +A ++YTSGSTG PKGV I H N  A
Sbjct: 78  PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 28/182 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E++   C FA+ L + G     R AI      E  IA   C R       +++    
Sbjct: 80  TYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSA 139

Query: 192 DALIHSLNETQVTTLI-CDS-----KQLKKLSAVSSSLK---TIKNVIYFENDGSEKDSG 242
           +AL   +N+ +   LI  D      K +     V  +L+   +++ VI  +  G E    
Sbjct: 140 EALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVP-- 197

Query: 243 VSGGISNW------TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMIT 296
           +  G   W        S + E E +      DP          I+YTSGSTG PKGV+ T
Sbjct: 198 MVEGRDVWWHDLMAKASPYCEPEPMD---AEDPLF--------ILYTSGSTGKPKGVVHT 246

Query: 297 HG 298
            G
Sbjct: 247 TG 248

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 65/288 (22%), Positives = 100/288 (34%), Gaps = 85/288 (29%)

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           PS + V  ++YTSG+TG PKGVM T      NI   A  ++      G  DV L   P+A
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-----GGGDVILMASPMA 246

Query: 328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT----LMAAVPAIF 383
           H         M      +   +T  + D  +  +        +++ T     MA+ P + 
Sbjct: 247 HQ-----TGFMYGLMMPLILNATAVLQDIWNPARA-----AELIRETGVTFTMASTPFLT 296

Query: 384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL 443
           D  R      V+E G    +LF                                      
Sbjct: 297 DLCR-----AVKESGAPVPSLFT------------------------------------- 314

Query: 444 GGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVG 500
                  +C GAP+           +GA I  A+G+TE     T +E DD    +    G
Sbjct: 315 ------FLCAGAPIPGILVERAWELLGALIVSAWGMTE-NGAVTVTEPDDALEKASTTDG 367

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEI---VVGGFNVTAGYFNNP 545
            P+P   +K++  +          + +GE    +V G +   GY   P
Sbjct: 368 RPLPGVEVKVIDAN-------GAKLSQGETGRLLVRGCSNFGGYLKRP 408

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 36/158 (22%)

Query: 413 LAAVE-----GSWFGAWGLERMLW----DAIVFKSVRAVLGG-------RIRFMICGGAP 456
           LAA+E      +W     L R+L     D     S+   +GG       RIR        
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIR-------- 282

Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWD 514
                  F  +   A    AYGLTETC+G T  E   +   +G  G  +    I++    
Sbjct: 283 ------DFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-G 335

Query: 515 EGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
            G +     P  +GEI + G  VT GY+ +P KT+E +
Sbjct: 336 AGRWLP---PNMKGEICMRGPKVTKGYWKDPEKTAEAF 370

Length = 497

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 75/431 (17%), Positives = 133/431 (30%), Gaps = 104/431 (24%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            TY E+  RA   A  L+  G   +    I  E   E  +      +     V +      
Sbjct: 4578 TYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPR 4637

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + + ++    L+  S  L++L                          +  G+++  
Sbjct: 4638 ERLAYMMEDSGAALLLTQSHLLQRLP-------------------------IPDGLASLA 4672

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
            +    + E      P     P  N +A ++YTSGSTG PKGV ++HG++V    A     
Sbjct: 4673 LDRDEDWEGFPAHDPAVRLHP-DN-LAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGER- 4729

Query: 312  PNPGRSDVYLAYLPLAHVLELAAESIM--LCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS 369
                  D  L ++  +   + + E +   L        G+++ + D S    +    ++ 
Sbjct: 4730 YELTPDDRVLQFMSFS--FDGSHEGLYHPLIN------GASVVIRDDSLWDPERLYAEIH 4781

Query: 370  VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERM 429
              + T++   P    ++ E                         A  +G           
Sbjct: 4782 EHRVTVLVFPPVYLQQLAEH------------------------AERDGEP--------- 4808

Query: 430  LWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF 488
                             +R    GG  ++  S            +   YG TET      
Sbjct: 4809 ---------------PSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETT----- 4848

Query: 489  SEWDDPSVGRVGPPVPC----CYIKLVSWDEGGYKTSDK--PMP---RGEIVVGGFNVTA 539
                   + +      C      I     +  GY    +  P+P    GE+ +GG  V  
Sbjct: 4849 ---VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVAR 4905

Query: 540  GYFNNPGKTSE 550
            GY   P  T+E
Sbjct: 4906 GYLERPALTAE 4916

Length = 5163

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 19/223 (8%)

Query: 127 DYEWQTYGEVFDRACSF----------ASGLVNFGHNVDTRAAILAETCVEWFIAFQGCF 176
           DY  +   E  DR  ++          A+ L+  G+  D   A+      +  I F G  
Sbjct: 33  DYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGAL 92

Query: 177 RQSITVVTIYSSLGEDALIHSLNETQVTTLIC-DSKQLKKLSAVSSSLKTIKNVIYFEND 235
           +    VV +    GE AL H L+++    LI  D   L  ++        +  +I  E+D
Sbjct: 93  KAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDD 152

Query: 236 GSEKDSGVSGGI-SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
              K       I ++  + ++++  K G  +P +    + + VA++ YT G+TGLPKG M
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAM 211

Query: 295 ITHGNIVATAAAIKTLIPNPGRSDV-----YLAYLPLAHVLEL 332
           +THGN+  +A +I  +   P R+        +  LPL H+  L
Sbjct: 212 LTHGNL-TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 38/176 (21%), Positives = 54/176 (30%), Gaps = 31/176 (17%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TYGE+  RA + A+ L   G       A++     E  +A  G        V I      
Sbjct: 14  TYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPA 73

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +     L       ++ D    +   A                                 
Sbjct: 74  ERRAAILARAGARAVLTDPGLAQPEEAPDL-----------------------------L 104

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
           V +           P     P    +A +++TSGSTG PKGVMITH   V T   +
Sbjct: 105 VVADDAAAAESPAPPPPRVDPDD--LAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 75/301 (24%), Positives = 105/301 (34%), Gaps = 86/301 (28%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
           A+IM+T G+TGLPK V  TH NI ++  AI T        D  +A +PL H   L A  +
Sbjct: 179 AMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALL 237

Query: 338 MLCAGC------AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV 391
              A        A G  S  T  D           D+  +  T   AVP I   + E   
Sbjct: 238 ATLASGGAVLLPARGRFSAHTFWD-----------DIKAVGATWYTAVPTIHQILLE--- 283

Query: 392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI 451
                                 AA E                       A L    RF+ 
Sbjct: 284 ---------------------RAATEP-----------------SGRKPAAL----RFIR 301

Query: 452 CGGAPLSADSQRFINICMGAPIGQAYGLTETC--AGSTFSEW----DDPS-----VGRVG 500
              APL+A++ + +     AP+  A+G+TE      +T  E     ++P      VGR  
Sbjct: 302 SCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST 361

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVW 560
                  I++V  D             GE+ + G  V  GY  +P  T+     NF   W
Sbjct: 362 GA----QIRIVGSDGL----PLPAGAVGEVWLRGTTVVRGYLGDPTITAA----NFTDGW 409

Query: 561 M 561
           +
Sbjct: 410 L 410

Length = 534

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 68/198 (34%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G  E  T+G++ D +   A+ L   G     R  +      E  IA    ++     V +
Sbjct: 2   GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
               G DA+ H L ++    L+                           DGS+       
Sbjct: 62  SVLFGPDAVEHRLRDSGARVLVT--------------------------DGSD------- 88

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                                 DP        A+++YTSG+TG PKG +  H  ++    
Sbjct: 89  ----------------------DP--------AILIYTSGTTGPPKGALHGHRVLLGHLP 118

Query: 306 AIKT---LIPNPGRSDVY 320
            ++    L P PG  DV+
Sbjct: 119 GVELYFELAPRPG--DVF 134

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
            ++  + GG  L   +        G  I + YG+TET    + +      VG +G PVP 
Sbjct: 327 ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPS 386

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
              K++  D+G      +    GE+ V G  V  GY+  P  T E+
Sbjct: 387 TLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQRPEATDEI 428

Length = 562

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 28/170 (16%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L+  G   D    +  E  VE  +A     +     V +      
Sbjct: 3122 SYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPR 3181

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L + + ++ V  L+  +  L++L A +                   D     G S   
Sbjct: 3182 ERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTL------------DRLDLNGYSE-- 3227

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
                         +P    +  +N +A ++YTSGSTG PKGV + HG + 
Sbjct: 3228 ------------NNP-STRVMGEN-LAYVIYTSGSTGKPKGVGVRHGALA 3263

Length = 3956

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)

Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP 325
           P+D        VA+++ TSG+TG PKG M+T   + A+A A    +  PG+   +L  LP
Sbjct: 32  PIDD------DVALVVATSGTTGTPKGAMLTAAALTASADATHDRLGGPGQ---WLLALP 82

Query: 326 LAHV 329
             H+
Sbjct: 83  AHHI 86

Length = 358

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 60/269 (22%), Positives = 99/269 (36%), Gaps = 62/269 (23%)

Query: 94  SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN 153
           ++  D            F+   DG ++           TYG++   +   A+ LV  G  
Sbjct: 3   NNLFDALRAAFADRDAPFIETPDGLRY-----------TYGDLDAASARLANLLVALGVK 51

Query: 154 VDTRAAILAETCVEWFIAFQGCFRQSITVV---TIYSS------LG--EDALIHSLNETQ 202
              R A+  E   E    +    R     +   T Y+       +G  E AL+       
Sbjct: 52  PGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALV------- 104

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
               +CD      LS ++++     +V   + DG+      +          F  V    
Sbjct: 105 ----VCDPANFAWLSKIAAAAGAP-HVETLDADGTGSLLEAAAAAP----DDFETVP--- 152

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-----TLIPNPGRS 317
            R   D        +A I+YTSG+TG  KG M++HGN+++ A  +      T    P   
Sbjct: 153 -RGADD--------LAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFT----PD-- 197

Query: 318 DVYLAYLPLAHVLEL-AAESIMLCAGCAI 345
           DV +  LP+ H   L  A ++ L AG ++
Sbjct: 198 DVLIHALPIFHTHGLFVATNVALLAGASM 226

Length = 504

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 254 SFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA----TAAAIKT 309
            F++    G R    P     + VA + YT G+TG+ KG  + H NIVA      A ++ 
Sbjct: 183 RFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP 242

Query: 310 LIPNPGRSD--VYLAYLPLAHVLELAAESIM 338
                 R D   ++  LPL H+  L    ++
Sbjct: 243 AFEKKPRPDQLNFVCALPLYHIFALTVCGLL 273

Length = 557

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 266 PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           P+  S P     A I++TSGSTG PKGVM+    IV
Sbjct: 591 PLQLSQPHH--TAYIIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITH----GNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           P  + V  ++YTSG+TG PKGVM T      NIV  A  +       G  DV L   P+A
Sbjct: 194 PGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-----GADDVILMASPMA 248

Query: 328 H 328
           H
Sbjct: 249 H 249

Length = 547

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 13/208 (6%)

Query: 129 EWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYS 187
           E  T+  +  RA + A  L +  G   D R   +   C E                 +  
Sbjct: 37  EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNK 96

Query: 188 SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI 247
            L  D ++H +N  +   ++ D +  ++L  +      ++ V++     S+ DS  +   
Sbjct: 97  QLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFI--GPSDADSAAAHMP 154

Query: 248 SNWTVSSFSEVEKLGKRSPVD--PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
               V S+  +  L  RS V   P L      A I Y++G+TG PKGV+ +H ++   + 
Sbjct: 155 EGIKVYSYEAL--LDGRSTVYDWPELDETTAAA-ICYSTGTTGAPKGVVYSHRSLYLQSL 211

Query: 306 AIKT---LIPNPGRSDVYLAYLPLAHVL 330
           +++T   L    G S  +L  +P+ HVL
Sbjct: 212 SLRTTDSLAVTHGES--FLCCVPIYHVL 237

Length = 576

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 43/178 (24%), Positives = 56/178 (31%), Gaps = 56/178 (31%)

Query: 131 QTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
            TY E+       ASGL   G     R  I      E  +A     +     V I+S  G
Sbjct: 8   WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
            DA+   L          ++K L                     DG  +           
Sbjct: 68  PDAVATRLQ-------DAEAKVL------------------ITADGFLRR---------- 92

Query: 251 TVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA 306
                      GKR  +  DP        A+I+YTSG+TG PKG + TH      AA 
Sbjct: 93  -----------GKRVDLKDDP--------AMIIYTSGTTGKPKGTVHTHAGFPVKAAK 131

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
              VAVI++TSG+  LPKGV +TH N++A   A      +P   DV +++LP  H
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFH 235

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 261  LGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
            L   S  +P++  +   +A ++YTSGSTG PKG    HG +V 
Sbjct: 1703 LEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVN 1745

Length = 3956

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 44/198 (22%), Positives = 65/198 (32%), Gaps = 43/198 (21%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +  ++   A + A  +         R A+LA   +   +A  G     + VV +    G 
Sbjct: 27  SRSDLAGAATAVAERVAGAR-----RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGV 81

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
               H L          DS     L         + +V                      
Sbjct: 82  AERRHILA---------DSGAQAWLGPAPDDPAGLPHV---------------------- 110

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
                 V  L  RS      P  +  A+I+YTSG+TG PKGV+++   I A   A+    
Sbjct: 111 -----PVR-LHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW 164

Query: 312 PNPGRSDVYLAYLPLAHV 329
                 DV +  LPL HV
Sbjct: 165 QWTAD-DVLVHGLPLFHV 181

Length = 471

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 453 GGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLV 511
           G A + A ++R+  +  G  I + YGLTET   ++ + + + + +G VG PVP   +K++
Sbjct: 342 GTALVKATAERWEQL-TGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVI 400

Query: 512 SWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEV 551
             D+G    ++ P+  RGE+ + G  V  GY+  P  T+E 
Sbjct: 401 D-DDG----NELPLGERGELCIKGPQVMKGYWQQPEATAEA 436

Length = 562

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 25/117 (21%)

Query: 446 RIRFMICGGAPLSAD-------SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGR 498
            +R +I GG              +R +N          YG TE    +T S         
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259

Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEVY 552
           +G P+P     ++          +  +P    GE+ +GG  V  GY N P  T+E +
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKF 310

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 270 SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL 326
            +P  +  A I++TSGSTG PKGV+ TH    A   A+++L       D  LA  P 
Sbjct: 80  GIPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-IREGDRDLAAFPP 135

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 24/173 (13%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +++ R  + A  L   G   D RA ILA   +E+ +AF G  +  +  V +    G 
Sbjct: 37  TWSQLYRRTLNVAEELRRHGSTGD-RAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQG- 94

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
                  ++ +V+ ++ D+      S V ++   + +V  +         G        +
Sbjct: 95  -----GAHDERVSAVLRDTSP----SVVLTTSAVVDDVTEY----VAPQPG-------QS 134

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQN--GVAVIMYTSGSTGLPKGVMITHGNIVA 302
                EV+ L   SP       ++    A + YTSGST  P GVM++H N++A
Sbjct: 135 APPVIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA 187

Length = 578

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 13/81 (16%)

Query: 476 AYGLTETCAGSTFSEWDDPSV---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
            YGL+E    +TF+  DD      G +G  +     K+V  +E G     + +P    GE
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIV--NELG-----EEVPVGEVGE 365

Query: 530 IVVGGFNVTAGYFNNPGKTSE 550
           ++V G NV  GY+++P  T+ 
Sbjct: 366 LLVRGPNVMKGYYDDPEATAA 386

Length = 513

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 43/144 (29%)

Query: 445 GRIRFMICGGAPLSAD-SQRFINIC--MGAP---IGQAYGLTETCAGSTFS--------- 489
             +R++I  G  + A   +RF+ +    G P   I  A+G++ETC+G T+S         
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348

Query: 490 ---------------EWDDPSVGR---VGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI- 530
                            D P       +G P+P   I++V  DE         +P GE+ 
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIV--DE-----DGALLPEGEVG 401

Query: 531 --VVGGFNVTAGYFNNPGKTSEVY 552
              V G  VT+GY+ NP   +E +
Sbjct: 402 RLQVRGPTVTSGYYRNPEANAEAF 425

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 477 YGLTETCAGSTF---SEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVV 532
           YGLTE    ST+    E D  P    +G  +P   + +V  DE G +    P   GE+V 
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRP--DSIGKAIPNVELWVV--DEDGNRC--APGEVGELVH 202

Query: 533 GGFNVTAGYFNNPGKTSEVYK 553
            G NV  GY+N+P  T+E  +
Sbjct: 203 RGANVMKGYWNDPEATAERLR 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 26/171 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            Y E+  RA   A  L+  G   D    +  E  +E  +A     +     V +      
Sbjct: 538 DYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPA 597

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + L + L ++ V  L+  S   +KL  +++ ++    V+  +   +              
Sbjct: 598 ERLAYMLEDSGVQLLLSQSHLGRKLP-LAAGVQ----VLDLDRPAAW------------- 639

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
           +  +SE       +P     P    +A ++YTSGSTG PKG    H  +  
Sbjct: 640 LEGYSE------ENPGTELNPEN--LAYVIYTSGSTGKPKGAGNRHRALSN 682

Length = 5163

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 26/117 (22%)

Query: 446 RIRFMICGGAPLSADSQ-----RFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
            +RF    GAPL A        RF     G  + + YG+TET      +  D    G  G
Sbjct: 197 PLRF--VFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGVP-IIAPGDPAPPGSCG 248

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV---GGFNVTAGYFNNPGKTSEV 551
            P P   +++V  DE       + +P    GE+VV     + +  GY+  P  T++ 
Sbjct: 249 RPRPGVEVRIV--DED-----GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKA 298

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 445 GRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV--GRVGP 501
             +R  +CGGAP+  + ++R     +GA + +AYG+TE    +  +  D         G 
Sbjct: 208 PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGR 266

Query: 502 PVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNP 545
           PVP   +++V  D+         +P    GE+ V G  +  GY + P
Sbjct: 267 PVPGVEVRIV--DD-----DGNDVPPGEEGELQVRGPQLFLGYLDPP 306

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFR-QSITV-VTIYSSL 189
           T+ E+ DR  + A  L   G     R  IL     E+  +        +I V V    + 
Sbjct: 44  TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103

Query: 190 GEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
            E A +  +++     ++ ++      +AV   +  +  V+            V+GG S+
Sbjct: 104 PEIAFL--VSDCGAHVVVTEAALAPVATAVRDIVPLLSTVV------------VAGGSSD 149

Query: 250 WTVSSFSEV--EKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
            +V  + ++  E     +PVD  +P  +  A+IMYTSG+TG PKG ++TH N+   A   
Sbjct: 150 DSVLGYEDLLAEAGPAHAPVD--IP-NDSPALIMYTSGTTGRPKGAVLTHANLTGQAM-- 204

Query: 308 KTLIPNPG---RSDVYLAYLPLAHVLELAAESIMLCAG 342
            T +   G    SDV    +PL H+  + +    L  G
Sbjct: 205 -TCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLG 241

Length = 542

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV-YLAYLPLAHVLELAAE 335
            A  +YTSG+TGLPK  +++H      A A+   +      DV YL  LPL H     + 
Sbjct: 83  PAFYIYTSGTTGLPKAAIMSHRR-WLRAGAVFGGLGLLKPDDVLYLC-LPLYH-----SN 135

Query: 336 SIMLCAGCAIGYGSTL 351
           ++ +    A+  G++L
Sbjct: 136 ALTVGWSSALAAGASL 151

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 15/79 (18%)

Query: 497  GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
            G VG P+P   +++V  +        + +P GE   I++GG  V  GY  +P KT+EV K
Sbjct: 960  GSVGMPLPGVAVRIVDPETF------EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013

Query: 554  VNFHCVWMLCICLYVSCDK 572
                  W      YV+ DK
Sbjct: 1014 DIDGIGW------YVTGDK 1026

Length = 1146

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--GEDALIHSLNETQVTTLICDSKQLK 214
           + A+  + C E+   + G  +    +V I + L   E A I  L  +Q + L+  ++   
Sbjct: 64  KVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWI--LQNSQASLLVTSAQFYP 121

Query: 215 KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ 274
               +     T    I         D GVS    ++T     +   L    P+     S 
Sbjct: 122 MYRQIQQEDATPLRHICLTRVALPADDGVS----SFTQLKAQQPATLCYAPPL-----ST 172

Query: 275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR-SDVYLAYLPLAHV 329
           +  A I++TSG+T  PKGV+ITH N+    A   +      R  DVYL  +P  H+
Sbjct: 173 DDTAEILFTSGTTSRPKGVVITHYNLR--FAGYYSAWQCALRDDDVYLTVMPAFHI 226

Length = 517

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 62/225 (27%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ E+ + +   A+     G+      A+  E  +E+   + G  +  +    I S+L  
Sbjct: 5   TFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRL 64

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           ++L+H +  ++   LI                                            
Sbjct: 65  ESLLHCITVSKAKALI-------------------------------------------- 80

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVA-----VIMYTSGSTGLPKGVMITHGNIVATAAA 306
              F+ ++ L  +S  +P  PSQ+ V        +YTSG+TGLPK  +I H      AA 
Sbjct: 81  ---FNLLDPLLTQSSTEP--PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAG 135

Query: 307 I-KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST 350
                   P   DV    LPL H    +A  IM   G A+ +GST
Sbjct: 136 AYYAFGMRP--EDVVYDCLPLYH----SAGGIM-GVGQALLHGST 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGS 286
           ++  E+  +E   G+  G+    V S +  ++L   + +     +   + + ++++TSG+
Sbjct: 104 LVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFMLIFTSGT 163

Query: 287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAH---VLELAAESIMLCAGC 343
           +G PK V  TH  + +    +       G  DV    +PL H   V  +A  ++ L AG 
Sbjct: 164 SGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAV--MAGWAVALAAGA 220

Query: 344 AI 345
           +I
Sbjct: 221 SI 222

Length = 529

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 49/212 (23%), Positives = 72/212 (33%), Gaps = 19/212 (8%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+       A+ L + G       A L     E   A  G     I    I   L  
Sbjct: 60  TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGI-ANPINPLLEP 118

Query: 192 DALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG 246
           + +   L       L+            K++ V ++L  ++ V+  E D +    G    
Sbjct: 119 EQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV--EVDLARYLPGPKRL 176

Query: 247 ISNWT-------VSSF-SEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
                       +  F +E+ +              + VA   +T G+TG+PK    THG
Sbjct: 177 AVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHG 236

Query: 299 NIVATAAAIKTLI-PNPGRSDVYLAYLPLAHV 329
           N VA A     L+   PG  D     LPL HV
Sbjct: 237 NEVANAWLGALLLGLGPG--DTVFCGLPLFHV 266

Length = 632

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 268 DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA 327
           D  L + + VA+I +TSG+TGLPKG M  H +I+A   A    +  P   DV++   PLA
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLA 199

Query: 328 HVLELAA 334
               L  
Sbjct: 200 FTFGLGG 206

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 436  FKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS 495
             +   A     ++ ++CGG  L AD Q+ +    G P+   YG TE     T  +  +  
Sbjct: 3302 LEEEDAHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEG 3359

Query: 496  VGR--VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSE 550
                 +G P+      ++         S +P+P G   E+ +GG  +  GY N PG T+E
Sbjct: 3360 KDAVPIGRPIANRACYILD-------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412

Length = 5163

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ DR C  A+ L + G        I     +E  IA   C R       +++    
Sbjct: 122 TYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSA 181

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSGGISN 249
           ++L   +       + C  K +   +AV    KTI  K+++    D S K+ GVS GI  
Sbjct: 182 ESLAQRI-------VDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKN-GVSVGIC- 232

Query: 250 WTVSSFSEVEKLGKR---------SPVDPSLPSQNGVA--------VIMYTSGSTGLPKG 292
            T  +   +++   +           V P+ P++  V          ++YTSGSTG PKG
Sbjct: 233 LTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 292

Query: 293 VM-ITHGNIVATAAAIK 308
           V+  T G +V TA   K
Sbjct: 293 VLHTTGGYMVYTATTFK 309

Length = 666

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 266 PVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           P D       +    I++TSG+TG PKGV I+H N+V
Sbjct: 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169

Length = 503

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 34/146 (23%), Positives = 47/146 (32%), Gaps = 49/146 (33%)

Query: 437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV 496
           ++ +  L   +R M  G  P  A  ++     +G  +   YGLTET    T  EW     
Sbjct: 274 EADKLPLPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKP--- 328

Query: 497 GRVGPPVPCCYIKLVSWDEG--------------GYKTSD----------KPMPR----- 527
                           WD                 Y   +          K +PR     
Sbjct: 329 ---------------EWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTI 373

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEVYK 553
           GEIV+ G  V  GY+ NP  T E + 
Sbjct: 374 GEIVMRGNTVMKGYYKNPEATEEAFA 399

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 62/236 (26%), Positives = 82/236 (34%), Gaps = 62/236 (26%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E++D     A  L   G     R  I      E  IA   C R           +G 
Sbjct: 75  TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACAR-----------IGA 123

Query: 192 DALIHSL-----NETQVTTLICDSK-----------------QLKKL--SAVS-SSLKTI 226
              IHS+        ++ + I D+K                   K L   A+  S  K  
Sbjct: 124 ---IHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPH 180

Query: 227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS 286
           K +I   N G        G   +W        E + K  PVD           I+YTSG+
Sbjct: 181 KVLIL--NRGQVPAPLKPGRDLDWA-------ELMAKARPVDCVPVESTDPLYILYTSGT 231

Query: 287 TGLPKGVM-ITHGNIVATAAAIKTLIP-NPGR-----SDV-------YLAYLPLAH 328
           TG PKGV+  T G  VA   +++ +    PG      SDV       Y+ Y PL H
Sbjct: 232 TGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLEL 332
           A+I++TSGS G PKGV+ +H +++A    IKT+       D +++ LPL H   L
Sbjct: 368 ALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN-DRFMSALPLFHSFGL 421

Length = 718

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
                 F+ CG       ++  +     A I   YG TE     T  +     + +  P 
Sbjct: 257 YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY-PR 315

Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
           +P  + K    L   DE G    +    +GEIV+ G +V+ GY NNP KT+E +
Sbjct: 316 LPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYLNNPEKTAEAF 367

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
             +R ++  G PL+ +   +     G PI   YG TET          +   G +G P P
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAP 256

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVV-------GGFNVTAGYFNNPGKTSEV 551
              + ++  D+ G +    P   G+I V       G F    GY  +P KT   
Sbjct: 257 GYRVAII--DDEGNEL--PPGEEGDIAVRVKPRPPGLF---RGYLKDPEKTEAT 303

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 30/194 (15%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +++++ C F+  L+N   + +    I     +E  IA   C R   T   ++     
Sbjct: 94  TYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSV 153

Query: 192 DALIHSLNETQVTTLICDSKQ---LKKLSAVSSSLK------TIK--NVI-YFEND-GSE 238
            +LI  + ET    LI  +       ++   + +LK      T K  NVI  F ND  SE
Sbjct: 154 KSLIDRI-ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSE 212

Query: 239 KDSGVSGGISNW--TVSSFSEVEKLGKRS--------PVDPSLPSQNGVAVIMYTSGSTG 288
            D      I     T+S + E++K+ + +        PV+ S P       I+YTSG+TG
Sbjct: 213 SDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHP-----LYILYTSGTTG 267

Query: 289 LPKGVMITHG-NIV 301
             K V+ ++G ++V
Sbjct: 268 NSKAVVRSNGPHLV 281

Length = 647

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 46/132 (34%)

Query: 447 IRFMICGGAPLS-ADSQRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP---- 494
           +RF + G  P+  AD +  ++   GA  G        AYG+ E     +FS         
Sbjct: 278 LRFALNGAEPIDPADVEDLLD--AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVD 335

Query: 495 ----------------------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GE 529
                                  +  +GPP+P   +++V  DE G     + +P    G 
Sbjct: 336 EVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV--DEDG-----QVLPPRGVGV 388

Query: 530 IVVGGFNVTAGY 541
           I + G +VT GY
Sbjct: 389 IELRGESVTPGY 400

Length = 545

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 13/80 (16%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI------VATAAAIKTL 310
           E E  G      P  P Q   A + YTSG+TGLPKG +I           ++T A ++  
Sbjct: 136 EPESAGPPIEDPPREPEQ--PAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRH- 192

Query: 311 IPNPGRSDVYLAYLPLAHVL 330
               GR +V L  +PL HV+
Sbjct: 193 ----GRHNVVLGLMPLYHVI 208

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.9 bits (102), Expect = 3e-04
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHV 329
           A +  TSGSTGLPK  + T    +A+A  + +L+P     D +L  LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHV 188

Length = 458

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDP------SVGRV 499
           +R  I  GAP   +  R +   M    +  AYG+TET   S  +   D       +VGR 
Sbjct: 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRT 378

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
            P +     K+V  D       +     GE+   G++V  GY+NNP  T+E 
Sbjct: 379 QPHLEV---KVVDPDGATVPRGEI----GELCTRGYSVMKGYWNNPEATAES 423

Length = 558

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 270  SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI 307
            SLP     A ++YTSGSTG PKGV+++HG I     A+
Sbjct: 2330 SLPQHQ--AYLIYTSGSTGKPKGVVVSHGEIAMHCQAV 2365

Length = 4334

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 257 EVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR 316
           +  +      + P   S     +I++TSG++G PKGVM++  N+  TA     L      
Sbjct: 122 DALEPADTPSIPPERVS-----LILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAH 176

Query: 317 SDVYLAYLPLAHVLELA 333
           S  +L   P+ H++ L 
Sbjct: 177 S-SFLCDAPMFHIIGLI 192

Length = 488

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 46/210 (21%)

Query: 133 YGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSL--- 189
           Y  +  RA + A  L+  G     R A++AET  ++  AF  C          Y+ L   
Sbjct: 52  YQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPV 102

Query: 190 ---------GEDALIHSLNETQVTTLICDSKQLKKL--SAVSSSLKTIKNVIYFENDGSE 238
                    G ++ I                QL+ +  SA  +++ T   ++ + N+ + 
Sbjct: 103 PLPLPMGFGGRESYI---------------AQLRGMLASAQPAAIITPDELLPWVNEATH 147

Query: 239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
            +  +       + + F  + +    + V    P+ + +A + Y+SGST  P+GV+ITH 
Sbjct: 148 GNPLLHVL----SHAWFKALPE----ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHR 199

Query: 299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAH 328
            ++A   AI          D  +++LP  H
Sbjct: 200 ALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR- 527
           G PI + YGL+ET   +T +  D     G +G P+P   + +   D+ G   +D P+   
Sbjct: 352 GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIR--DDDG---NDLPLGEP 406

Query: 528 GEIVVGGFNVTAGYFNNPGKTSEV 551
           GEI + G  V AGY+N P +T++V
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKV 430

Length = 557

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 16/22 (72%), Positives = 19/22 (86%)

Query: 280 IMYTSGSTGLPKGVMITHGNIV 301
           I+YTSGSTG PKGV I+H N+V
Sbjct: 146 IIYTSGSTGNPKGVQISHDNLV 167

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 21/125 (16%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG-STFSEWDDPSVGRVGPPVP 504
           R+R +  GG  L  +   +    +G  + + YG TE        +       G +G PVP
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVP 267

Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA-------GYFNNPGKTSEVYKVNFH 557
              + +V  D+ G     +P+P GE  VG   V         GY+NNP  T+      F 
Sbjct: 268 GHEVAVV--DDAG-----RPVPPGE--VGEIAVKRPDPVMFLGYWNNPEATAAK----FA 314

Query: 558 CVWML 562
             W+L
Sbjct: 315 GDWLL 319

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ D A  FA+ L   G +   R  +L     E   AF  C +     V +   L  
Sbjct: 12  TYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTP 71

Query: 192 DALIHSLNETQVTTLICD 209
             L H L+++    L+ +
Sbjct: 72  QDLEHILDDSGAALLVTE 89

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R    A+GL+  G     R A++ + C E+  A+    +     V I ++L  
Sbjct: 5   TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64

Query: 192 DALIHSLNETQVTTLICD 209
           + L H L+ +    ++ D
Sbjct: 65  EELAHILDHSGARLIVVD 82

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 14/22 (63%), Positives = 19/22 (86%)

Query: 275  NGVAVIMYTSGSTGLPKGVMIT 296
            + +A ++YTSGSTGLPKGVM+ 
Sbjct: 3869 DNLAYVIYTSGSTGLPKGVMVE 3890

Length = 4334

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 39/114 (34%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 448 RFMICGGAPLS---ADS--QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
            F+ CG   L    A    +RF +    A I   YG TE     T  E  D  + +    
Sbjct: 264 HFLFCGEE-LPHKTAKKLLERFPS----ATIYNTYGPTEATVAVTSIEITDEMLDQY-KR 317

Query: 503 VPCCYIK----LVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
           +P  Y K    L+  DE G K  D     GEIV+ G +V+ GY NNP KT+E +
Sbjct: 318 LPIGYAKPDSPLLIIDEEGTKLPD-GEQ-GEIVISGPSVSKGYLNNPEKTAEAF 369

Length = 503

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 16/115 (13%)

Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSV-----GRV 499
             +  +  GGAP +A+      +  G P+   +G++E  AG+ F    D  V     G  
Sbjct: 252 RHLTALFTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAGAA 308

Query: 500 GPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
           G P P    ++V  D+ G   +D P  +P GE+++ G N++ GY+  P  T+  +
Sbjct: 309 GIPTPTVQTRVV--DDQG---NDCPAGVP-GELLLRGPNLSPGYWRRPQATARAF 357

Length = 488

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 277 VAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAES 336
            A ++YTSG+TGLPKG  I+    + T+  +   +        Y   +PL H       +
Sbjct: 89  PAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC-MPLYH-----GTA 142

Query: 337 IMLCAGCAIGYGSTL 351
             L     +G G TL
Sbjct: 143 AFLGLCYCLGSGGTL 157

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 27/229 (11%)

Query: 132 TYGEVFDRACSFASGLVNFG--HNVDTRAAILAET----CVEWF-IAFQGCFRQSITVVT 184
           TY EV  R+   A  L+        DT A +L        + W  +A  GC         
Sbjct: 5   TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWI-WLGLAKLGC-----PTAF 58

Query: 185 IYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS 244
           + +++   +L+H         L+ D + L+ +  +  +L+ +   +++ +  S       
Sbjct: 59  LNTNIRSGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHTS-----PP 113

Query: 245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
            G+ +      +  ++    S            A+ +YTSG+TGLPK   I+H  ++   
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRS--TALYIYTSGTTGLPKAARISHLRVLQ-C 170

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           + + +L        VY   LPL H     + +++   GC IG G+TL +
Sbjct: 171 SGMLSLCGVTADDVVYTT-LPLYHS----SGALLGIVGC-IGLGATLVL 213

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 32/231 (13%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+ +W +Y E+  RA + A+GL   G      A +      E++I F    +  +  V  
Sbjct: 45  GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDGSEKD 240
             S  +  L    ++ +    I D              + S L T++N+I       E  
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNII-VAGQTGEA- 161

Query: 241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
                         F  +E   +     P+   +  VA    + GSTG PK +  TH + 
Sbjct: 162 ------------ELFLWLESPAEPVKFPPTKSDE--VAFFQLSGGSTGTPKLIPRTHNDY 207

Query: 301 ---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELA---AESIMLCAGCAI 345
              V  +  I  L         YL  LP AH   L+   A  +    GC +
Sbjct: 208 YYSVRRSVEICWLTQ----QTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 254

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 24/226 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ +R+   A    + G       AI  E  + +        R  +    + S L  
Sbjct: 26  TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTP 85

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
               + ++++    LI  + +L    A+      +++ +  + DG               
Sbjct: 86  AEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDG--------------E 131

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM--ITHGNIVATAAAIKT 309
           +  F    +     P  P +  ++    ++Y+SG+TG PKG+   +              
Sbjct: 132 LEGFVGYAEAVAGLPATP-IADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF 190

Query: 310 LIPNPG-RSD-VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM 353
           L    G RSD VYL+  PL H     A  +++  G     G+ + M
Sbjct: 191 LQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG-----GTVIVM 231

Length = 511

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 63/284 (22%), Positives = 100/284 (35%), Gaps = 59/284 (20%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE---S 336
           ++YT G+TG+PKGVM    +I              G               ++AA    +
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLG--------GPDFATGEPTLEELAKQVAAGGAGT 59

Query: 337 IMLCAGCAI-GYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE 395
             L A   + G G  L ++   +       G   VL P         FD  R  V + VE
Sbjct: 60  RFLPACPLMHGAGQWLALSALFA-------GGTVVLLPDDK------FDPDR--VWRTVE 104

Query: 396 EKGGLTKNLFNIG--YKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC 452
           +    T  L  +G  + R L  A+E +  G + L  +                  R +  
Sbjct: 105 KHRVNT--LVIVGDAFARPLLEALEAA--GRYDLSSL------------------RAISS 142

Query: 453 GGAPLSADS-QRFINICMGAPIGQAYGLTETCA-GSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GA  S +  Q  + +     +  A G +ET   GS+ S     S    G         +
Sbjct: 143 SGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRAGGAS--ATGKFELGPDTVV 200

Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV 554
           +  ++G           G I  GG  V  GY+ +P KT++ ++ 
Sbjct: 201 LD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFRE 241

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 32/116 (27%), Positives = 43/116 (37%), Gaps = 25/116 (21%)

Query: 447 IRFMICGGAPLSAD-----SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGR 498
           +RF +CGG  +         QR I +         YG TE+         DDP    +  
Sbjct: 304 LRFFLCGGTTIPKKVARECQQRGIKLL------SVYGSTESSP-HAVVNLDDPLSRFMHT 356

Query: 499 VGPPVPCCYIKLVSWDEGGYKTSDKPMPRG---EIVVGGFNVTAGYFNNPGKTSEV 551
            G       IK+V  DE     + K +P G   E    G NV  GY + P  T+  
Sbjct: 357 DGYAAAGVEIKVV--DE-----ARKTLPPGCEGEEASRGPNVFMGYLDEPELTARA 405

Length = 547

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 63/192 (32%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E+ + +  FA+ L + G     R   L     E ++A  G  +       ++S+ G 
Sbjct: 2   SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           + +   L   +   LI  + +L +                                    
Sbjct: 62  EPIRDRLELGEAKVLIT-TPELYE------------------------------------ 84

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA---TAAAIK 308
                      +  P DP+L        + +TSG+TG PKGV+  H  +VA   TA  + 
Sbjct: 85  -----------RTDPEDPAL--------LHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125

Query: 309 TLIPNPGRSDVY 320
            L P+    DVY
Sbjct: 126 DLRPD----DVY 133

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 31/167 (18%)

Query: 132  TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
            +Y E+  RA   A  L+  G   D    +  E  +E  +      +     V +     E
Sbjct: 3084 SYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPE 3143

Query: 192  DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
            + L           ++ DS     LS     L   + V   +    ++            
Sbjct: 3144 ERL---------AYMLEDSGAQLLLSQSHLRLPLAQGV---QVLDLDRGD---------- 3181

Query: 252  VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG 298
                   E   + +P   ++P    +A ++YTSGSTG PKGV I H 
Sbjct: 3182 -------ENYAEANPAIRTMPEN--LAYVIYTSGSTGKPKGVGIRHS 3219

Length = 5163

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 25/175 (14%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E+ + +  FA+ L   G     R  I      E + A  G  +    V  ++ +  E
Sbjct: 75  TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
           +A+   L +++   LI     L++    +  L ++K+V+    D  E            T
Sbjct: 135 EAVRDRLEDSEAKVLITTPALLERK--PADDLPSLKHVLLVGEDVEEGPG---------T 183

Query: 252 VSSFSEVEKLGKR---SPVDPSLPSQNGVAVIMYTSGSTGLPKGV------MITH 297
           +   + +E+          D         A++ YTSGSTG PKGV      M+ H
Sbjct: 184 LDFNALMEQASDEFDIEWTDREDG-----AILHYTSGSTGKPKGVLHVHNAMLQH 233

Length = 570

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 447 IRFMICGGAPL-SADSQRFINICMGAPIGQAYGLTETCAGSTF------SEWDDPSVGRV 499
           +R++I  GAP+  AD +R +   +G  + Q +GL E     T          D P   R+
Sbjct: 282 LRYVIYAGAPMYRADQKRALAK-LGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDA-RI 339

Query: 500 GPPVPCCY----IKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK 553
           G    C +    +++   D+ G +    P   GEI V G  V AGY+NNP   ++ ++
Sbjct: 340 GT---CGFERTGMEVQIQDDEGREL--PPGETGEICVIGPAVFAGYYNNPEANAKAFR 392

Length = 528

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 42/200 (21%), Positives = 77/200 (38%), Gaps = 12/200 (6%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY ++ DRA   +  L   G  +  R A +A        A+ G         T+   L  
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS--N 249
           + +   +N  +   +I D   +  L  ++  L +++  +   +      + +   ++   
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEE 160

Query: 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATAAAIK 308
           W     +E +        D     +N  A + YTSG+TG PKGV+ +H  N++    A  
Sbjct: 161 W----IAEADGDFAWKTFD-----ENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANN 211

Query: 309 TLIPNPGRSDVYLAYLPLAH 328
                   +D  L  +PL H
Sbjct: 212 GDALGTSAADTMLPVVPLFH 231

Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.93
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.92
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.92
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.88
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.86
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.78
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.66
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.61
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.12
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.23
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.33
PLN02247	606	indole-3-acetic acid-amido synthetase	96.06
PLN02620	612	indole-3-acetic acid-amido synthetase	95.58
PLN02249	597	indole-3-acetic acid-amido synthetase	94.45
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.38
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	88.77
PRK09188	365	serine/threonine protein kinase; Provisional	87.94
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.74

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-84  Score=642.74  Aligned_cols=507  Identities=49%  Similarity=0.789  Sum_probs=476.0

Q ss_pred             CCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHH
Q 008134           58 GGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF  137 (576)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~  137 (576)
                      ...+|++-...+   +...++++..|+.++|++.++++.++.|+.+|++...+.+++.||+.|++++.++|.++||.|+.
T Consensus        20 ~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~   96 (678)
T KOG1180|consen   20 TAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVY   96 (678)
T ss_pred             CccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHH
Confidence            667777655444   78888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCE-EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHH
Q 008134          138 DRACSFASGLVNFGHNVDTR-AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKL  216 (576)
Q Consensus       138 ~~~~~lA~~L~~~Gv~~gd~-V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l  216 (576)
                      +++.++|++|.++|++++++ |+|+++.+.+|+++++||++.+..+|.++.+++.+.+.+-|++++++.+||+.+.++.+
T Consensus        97 ~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl  176 (678)
T KOG1180|consen   97 ERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKL  176 (678)
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHH
Confidence            99999999999999998777 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCccEEEEecCCCCCCC-CCCCC-CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEE
Q 008134          217 SAVSSSLKTIKNVIYFENDGSEKD-SGVSG-GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM  294 (576)
Q Consensus       217 ~~~~~~~~~~~~vv~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~  294 (576)
                      ...+..++.+++||++++.+.... +.+.. ...++.+++|+++++.+.....++.++.|+|+|+|||||||||.|||||
T Consensus       177 ~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVm  256 (678)
T KOG1180|consen  177 KAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVM  256 (678)
T ss_pred             HHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence            988899999999999996443321 11111 3457899999999999998877777779999999999999999999999


Q ss_pred             echHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeeccc
Q 008134          295 ITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT  374 (576)
Q Consensus       295 ~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t  374 (576)
                      ++|.|+++.+.......+.+++.|+++.++||+|++.+...+.+++.|+.+.+.++.++.+.++.+.+...+++..+|||
T Consensus       257 l~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPT  336 (678)
T KOG1180|consen  257 LTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPT  336 (678)
T ss_pred             EecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccch
Confidence            99999999999988887789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcC
Q 008134          375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG  454 (576)
Q Consensus       375 ~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG  454 (576)
                      +|.++|.+|+++.+....+..+.+.+++.+|+.+|.+|+..+.     ++|.+++++|.++|+++|..+|++||++++||
T Consensus       337 iM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGG  411 (678)
T KOG1180|consen  337 IMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYILSGG  411 (678)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEEeCC
Confidence            9999999999999999999999999999999999999999886     58999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc
Q 008134          455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG  534 (576)
Q Consensus       455 ~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G  534 (576)
                      +||+++.++++..++.+++.++||.||+++.++...+.+...+.+|.|++.++++++|++++++.+...| +.|||+|+|
T Consensus       412 apLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~i~G  490 (678)
T KOG1180|consen  412 APLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEILIGG  490 (678)
T ss_pred             CCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987766 899999999


Q ss_pred             CcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          535 FNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       535 ~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      +++..|||+|||+|++.|.. .+|.|||+|||+|.+.+||
T Consensus       491 ~~vt~gY~kn~ekT~e~ft~-~~G~~WF~TGDIGe~~pdG  529 (678)
T KOG1180|consen  491 PNVTMGYYKNEEKTKEDFTV-EDGQRWFRTGDIGEFHPDG  529 (678)
T ss_pred             CccChhhhCChhhhhhhcee-cCCcEEEeccccceecCCC
Confidence            99999999999999999954 6999999999999999987

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-76  Score=611.24  Aligned_cols=464  Identities=35%  Similarity=0.590  Sum_probs=409.3

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      ...+..+..|+++.|.+.+..+|+.+++..+.-.        ++       .+.|+++||.|+.+++.++|..|+.+|++
T Consensus        67 ~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~-------~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   67 FSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DG-------KGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cC-------CCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            3444567799999999999999999999998532        33       37889999999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEEC-chhhhHHHHhhh--cCCCccEEE
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD-SKQLKKLSAVSS--SLKTIKNVI  230 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~l~~~~~--~~~~~~~vv  230 (576)
                      +++.|+|+.-|++||+++.+||...|.++|||+.+++++.+.+|+++++++++|++ ++..+.+.+...  .++.++.+|
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 566677766665  478899999


Q ss_pred             EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCC-CCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH--
Q 008134          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP-SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--  307 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--  307 (576)
                      .+++..........  ..++.++||+++.+.+......+ .++.|+|.|.|+|||||||.|||||+||+|+++.+...  
T Consensus       212 ~~~~~~~~~~~~~~--~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~  289 (691)
T KOG1256|consen  212 QLDEPSDELKEKAE--NNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF  289 (691)
T ss_pred             EecCCchhhhhhhh--cCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence            99987543322222  23788999999999997766666 58899999999999999999999999999999965532  


Q ss_pred             -HhhC--CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHH
Q 008134          308 -KTLI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI  382 (576)
Q Consensus       308 -~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  382 (576)
                       ....  .....+|++++++||+|++........++.|+++.+  +|+..+.++           +++.+||.+.+||.+
T Consensus       290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d-----------lk~lkPT~f~~VPRV  358 (691)
T KOG1256|consen  290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD-----------LKELKPTVFPGVPRV  358 (691)
T ss_pred             hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH-----------HHHhCCcEEeccHhH
Confidence             2221  123347999999999999999887777899999999  777777777           999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-hhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH
Q 008134          383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRL-AAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS  461 (576)
Q Consensus       383 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~  461 (576)
                      |+++.+..+++....+.+++++|++|+++|+ ..+..|-...   +++++|+++|+++|+.+|+++|.+++|++|+++++
T Consensus       359 l~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~---~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev  435 (691)
T KOG1256|consen  359 LERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS---RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEV  435 (691)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc---cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHH
Confidence            9999999999999989999999999999999 5554222221   57899999999999999999999999999999999


Q ss_pred             HHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccc
Q 008134          462 QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY  541 (576)
Q Consensus       462 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY  541 (576)
                      ..+++..+|++|+++||+|||++.++...+.+...+++|.|+|+++++++|+++.++..   .+..|||||||++|+.||
T Consensus       436 ~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a---~~~~GEIcirG~~Vf~GY  512 (691)
T KOG1256|consen  436 LTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDA---DGSKGEICVRGPNVFMGY  512 (691)
T ss_pred             HHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCc---CCCcceEEEecchhceec
Confidence            99999999999999999999998888888877788999999999999999999999865   677999999999999999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+||++|+++|  |.||  |++|||+|+||++|-
T Consensus       513 yK~p~~T~e~i--deDG--WLhTGDiG~~~p~G~  542 (691)
T KOG1256|consen  513 YKDPEKTAEAI--DEDG--WLHTGDIGEWDPNGT  542 (691)
T ss_pred             cCChHHHhhhh--cccc--ccccccceeECCCcc
Confidence            99999999999  9999  999999999999983

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2.1e-71  Score=619.45  Aligned_cols=502  Identities=71%  Similarity=1.192  Sum_probs=425.1

Q ss_pred             cccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCC
Q 008134           73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH  152 (576)
Q Consensus        73 ~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv  152 (576)
                      ....++++..|+.++|+++++++||++|+.++.+...+.+.+++|+.|.+.+.++|+++||+||.++++++|++|.++|+
T Consensus        49 ~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~  128 (696)
T PLN02387         49 LVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGH  128 (696)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCC
Confidence            44556677899999999999999999999876544333333446776777777889999999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEe
Q 008134          153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYF  232 (576)
Q Consensus       153 ~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~  232 (576)
                      ++||+|+|+++|+++|+++++||+++|+++|||++.++.+++.++|++++++++|++.+..+.+......++.++.++++
T Consensus       129 ~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~  208 (696)
T PLN02387        129 NKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYM  208 (696)
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999988888877777777788899988


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCC
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  312 (576)
                      +.......... .....+.+.+++++...+...+.......++|+++|+|||||||.||||++||+++++.+......++
T Consensus       209 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~  287 (696)
T PLN02387        209 DDEGVDSDSSL-SGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVP  287 (696)
T ss_pred             CCCCchhhhhh-hccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcC
Confidence            76432110000 01124567789988876544333334557899999999999999999999999999998887766543


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  392 (576)
                      .+.++|++++++|++|++++...+.++..|+++.++.+..+.+........+...+++++||++.++|++++.+.+....
T Consensus       288 ~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~  367 (696)
T PLN02387        288 KLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRK  367 (696)
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHH
Confidence            68889999999999999999887778889999998777666554322234455669999999999999999999988877


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCc
Q 008134          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP  472 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~  472 (576)
                      +....+.+.+.+|+++++.++..+...+++..+...+++|.++++++|+.+|+++|.+++||+++++++.++++..+|++
T Consensus       368 ~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~  447 (696)
T PLN02387        368 KVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAP  447 (696)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCC
Confidence            77788889999999999999988887777777888999999999999999999999999999999999999998888999


Q ss_pred             eecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134          473 IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (576)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f  552 (576)
                      ++++||+||+++.++...+.+...+++|+|+|+++++|+|++++++....++++.|||+|+||+++.|||++|+.|+++|
T Consensus       448 v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f  527 (696)
T PLN02387        448 IGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVY  527 (696)
T ss_pred             eeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhh
Confidence            99999999998877776665556689999999999999997777665434566789999999999999999999999999


Q ss_pred             cccccccceeeeCCeecccCccC
Q 008134          553 KVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       553 ~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..+++|.+||+|||+|++|+||-
T Consensus       528 ~~d~~G~~W~~TGDig~~d~dG~  550 (696)
T PLN02387        528 KVDERGMRWFYTGDIGQFHPDGC  550 (696)
T ss_pred             ccccCCCceeecCceEEECCCCc
Confidence            65667778999999999999984

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=6.6e-68  Score=560.87  Aligned_cols=445  Identities=30%  Similarity=0.473  Sum_probs=362.3

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (576)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (576)
                      +....++..++.++++.+|+..|+.++.                   .+.++.+||+|+.+++.++|++|+++|+.+||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdr   72 (613)
T COG1022          12 VAEIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDR   72 (613)
T ss_pred             hhhcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence            3445789999999999999988887642                   356788999999999999999999999977999


Q ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-hHHHHhhhcCCCccEEEEecC--
Q 008134          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKLSAVSSSLKTIKNVIYFEN--  234 (576)
Q Consensus       158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~l~~~~~~~~~~~~vv~~~~--  234 (576)
                      |+|++.|+++|+++.+||+.+|++.||++++.+++++.++|++++++++|++.... +.+..+...++.+...+....  
T Consensus        73 vai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (613)
T COG1022          73 VAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLV  152 (613)
T ss_pred             EEEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999998544 444444433222111111100  


Q ss_pred             -CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC
Q 008134          235 -DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (576)
Q Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~  313 (576)
                       .........-..........+ .+.  .........+..+||+|.|+|||||||.|||||+||+|+++++......+ .
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-~  228 (613)
T COG1022         153 REAVEAKALVLEVFPDEGISLF-LID--SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-P  228 (613)
T ss_pred             hhccchhhccccccccccchhh-hhc--ccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-C
Confidence             000000000000000011111 111  11111112567899999999999999999999999999999999999988 6


Q ss_pred             -CCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEE-CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          314 -PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY-GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       314 -~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                       .+++|++++++|++|++.... ....+..|++++. .++..+..+           +.++|||.+++||++|+.+.+..
T Consensus       229 ~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I  297 (613)
T COG1022         229 PIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGI  297 (613)
T ss_pred             CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHH
Confidence             899999999999999999986 5566777777666 787888887           99999999999999999999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccC-chhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW-GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ..+....+..++.+|+++++.+.........+.- .......|+++|+++|+.+|+++|++++||+++++++..+++.. 
T Consensus       298 ~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-  376 (613)
T COG1022         298 MEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-  376 (613)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-
Confidence            9999999999999999999887543322211111 11222478999999999999999999999999999999999987 


Q ss_pred             CCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      |++++++||+|||+++++.+.+.....+++|+|+|+++++|+|              .|||+||||+|++|||+||++|+
T Consensus       377 Gi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Ta  442 (613)
T COG1022         377 GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATA  442 (613)
T ss_pred             CCCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHh
Confidence            8999999999999999999999999999999999999999998              39999999999999999999999


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|  ++||  ||+|||+|.+|+||.
T Consensus       443 eaf--~~DG--Wf~TGDlg~~d~~g~  464 (613)
T COG1022         443 EAF--TEDG--WFRTGDLGELDEDGY  464 (613)
T ss_pred             hhc--cccC--CcccCceeEEcCCCc
Confidence            999  8899  999999999999874

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-66  Score=576.17  Aligned_cols=456  Identities=20%  Similarity=0.318  Sum_probs=375.6

Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC---CC
Q 008134           76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF---GH  152 (576)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~---Gv  152 (576)
                      .++....|+.++|.++++++|+++|+++.+          +|.        .++++||+||.++++++|++|.++   |+
T Consensus        55 ~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g~--------~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv  116 (746)
T PTZ00342         55 SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CGE--------PQNYITYGNFFKKVLSFSHSLNTYEGKGI  116 (746)
T ss_pred             ccccccchHHHHHHHHHhhcCCceeEeccC----------CCC--------CceeeeHHHHHHHHHHHHHHHHHHhhcCC
Confidence            555667899999999999999999998531          221        246899999999999999999974   99


Q ss_pred             CCC-----------CEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhh
Q 008134          153 NVD-----------TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSS  221 (576)
Q Consensus       153 ~~g-----------d~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~  221 (576)
                      ++|           |+|+|+++|+++|+++.+||+++|++.||+++.++.+++.++|++++++++|++.+..+.+.+...
T Consensus       117 ~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~  196 (746)
T PTZ00342        117 PEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKN  196 (746)
T ss_pred             CcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhc
Confidence            999           999999999999999999999999999999999999999999999999999999888888777777


Q ss_pred             cCCCccEEEEecCCCCCC-----------------CCC------------------------------------CC--CC
Q 008134          222 SLKTIKNVIYFENDGSEK-----------------DSG------------------------------------VS--GG  246 (576)
Q Consensus       222 ~~~~~~~vv~~~~~~~~~-----------------~~~------------------------------------~~--~~  246 (576)
                      .++.++.+++++......                 ...                                    +.  ..
T Consensus       197 ~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (746)
T PTZ00342        197 ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAK  276 (746)
T ss_pred             cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhh
Confidence            778889999887532110                 000                                    00  00


Q ss_pred             CCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-CCCCCCcEEEEecC
Q 008134          247 ISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPGRSDVYLAYLP  325 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~d~~l~~~p  325 (576)
                      ..+.....++++..... .........++|+|+|+|||||||.||||++||+|+++.+....... ......|++++++|
T Consensus       277 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LP  355 (746)
T PTZ00342        277 KLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLP  355 (746)
T ss_pred             cCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCc
Confidence            01233455666554321 12223445789999999999999999999999999999887654432 01235689999999


Q ss_pred             hHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHH
Q 008134          326 LAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN  403 (576)
Q Consensus       326 l~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  403 (576)
                      ++|++++...+.+++.|+++++  .++..+.+.           |++++||+++++|++|++|......+....+.+.++
T Consensus       356 L~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~  424 (746)
T PTZ00342        356 ISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRF  424 (746)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            9999999888888999999998  455666666           999999999999999999999888877778888999


Q ss_pred             HHHHHHHHHHhhhhCCccccCchhhhhHHHH--HHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCccc
Q 008134          404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAI--VFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE  481 (576)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE  481 (576)
                      +|+++++.+.....       +..+++++.+  +++++|+.++++||.+++||+++++++.++|+..+|++++++||+||
T Consensus       425 ~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTE  497 (746)
T PTZ00342        425 LVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTE  497 (746)
T ss_pred             HHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCc
Confidence            99999988877543       2234566665  69999999999999999999999999999999989999999999999


Q ss_pred             ccCCccccCCCCCCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccc
Q 008134          482 TCAGSTFSEWDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVW  560 (576)
Q Consensus       482 ~~~~~~~~~~~~~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~  560 (576)
                      +++..+...+.+...+++|+|+ |+++++|+|+++....   +.++.|||+|+||+++.|||++|+.|+++|  +.||  
T Consensus       498 t~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~---~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f--~~dG--  570 (746)
T PTZ00342        498 TTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKAT---DTLPKGELLIKSDSIFSGYFLEKEQTKNAF--TEDG--  570 (746)
T ss_pred             ccceeeeccCCCCCcccccCcCCCcEEEEEecccccccC---CCCCceEEEEecCcccccccCChhhhhhhc--CcCC--
Confidence            9887776666666678999998 9999999996654322   244679999999999999999999999999  6688  


Q ss_pred             eeeeCCeecccCccC
Q 008134          561 MLCICLYVSCDKTLE  575 (576)
Q Consensus       561 ~~~TGDlg~~d~d~e  575 (576)
                      ||+|||+|++|+||.
T Consensus       571 W~~TGDig~~d~dG~  585 (746)
T PTZ00342        571 YFKTGDIVQINKNGS  585 (746)
T ss_pred             cccCCcEEEECCCCe
Confidence            999999999999984

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.3e-66  Score=571.66  Aligned_cols=463  Identities=31%  Similarity=0.552  Sum_probs=365.8

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      +.+...|+.++|+++++++||++|+.+++..        ++.      .+.++++||+||.++++++|++|+++|+++||
T Consensus        40 ~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd  105 (666)
T PLN02614         40 PIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEA  105 (666)
T ss_pred             CCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            3456679999999999999999999864210        221      13456799999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhc-CCCccEEEEecCC
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS-LKTIKNVIYFEND  235 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~vv~~~~~  235 (576)
                      +|+|+++|+++|+++++||+++|+++|||++.++.+++.+++++++++++|++.+....+...... .+.++.++.++..
T Consensus       106 ~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~  185 (666)
T PLN02614        106 KCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV  185 (666)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCC
Confidence            999999999999999999999999999999999999999999999999999988765544332221 1235677776542


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC----
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----  311 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----  311 (576)
                      ......  .....++.+.+++++...+...........++|+++|+|||||||.||||++||+++++.+......+    
T Consensus       186 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~  263 (666)
T PLN02614        186 SREQKE--EAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSAN  263 (666)
T ss_pred             ChHHhh--hhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccc
Confidence            110000  00001334678888776543222222335689999999999999999999999999998877665443    


Q ss_pred             CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       312 ~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      ..+.++|++++++|++|.+++...+.++..|+++++  .++..+++.           +++++||+++++|++|+.+...
T Consensus       264 ~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~~~~T~~~~vP~~~~~l~~~  332 (666)
T PLN02614        264 AALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED-----------LGELKPTIFCAVPRVLDRVYSG  332 (666)
T ss_pred             cCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHHhCCeEEEecHHHHHHHHHH
Confidence            146789999999999999998766677889999988  344555555           9999999999999999999987


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ........+.+.+++|.++++.+...+..+  .......++++.++++++++.++++||.+++||+++++++.+++ +.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~-~~~  409 (666)
T PLN02614        333 LQKKLSDGGFLKKFVFDSAFSYKFGNMKKG--QSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFL-RVV  409 (666)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHcC--CCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH-HHh
Confidence            777677777788899999998877665421  11223456788899999999999999999999999998865544 455


Q ss_pred             -CCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          470 -GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       470 -~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                       +++++++||+||+++.++...+.+ ...+++|+|+||++++|+|+++++..+ +++|+.|||+|+||+++.|||++|+.
T Consensus       410 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~~GEl~vrGp~v~~GY~~~pe~  488 (666)
T PLN02614        410 ACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTPRGEICIRGKTLFSGYYKREDL  488 (666)
T ss_pred             cCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCCCceEEEcCCcccccccCCHHH
Confidence             589999999999987655444333 245899999999999999865543333 67899999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++|   .+|  ||+|||+|++|+||.
T Consensus       489 T~~~f---~dG--w~~TGDlg~~d~dG~  511 (666)
T PLN02614        489 TKEVL---IDG--WLHTGDVGEWQPNGS  511 (666)
T ss_pred             hhhhh---ccC--CcccceEEEEcCCCC
Confidence            99999   378  999999999999984

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-65  Score=573.39  Aligned_cols=492  Identities=31%  Similarity=0.512  Sum_probs=391.4

Q ss_pred             ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccC--CCc--ceeeecC
Q 008134           50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTAS--DGR--KFEKLHL  125 (576)
Q Consensus        50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~--dg~--~~~~~~~  125 (576)
                      +..++++..++++.+...++          ...|++++|+++++++||++|+++++......+.++  +|+  .|.....
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  116 (700)
T PTZ00216         47 IYRIAGVTDEEHERLRNEWY----------YGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHF  116 (700)
T ss_pred             cccCcccccchhcccccccC----------CCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCcccccccccc
Confidence            77777777766666544333          336899999999999999999998642211111111  222  2333344


Q ss_pred             CCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceE
Q 008134          126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTT  205 (576)
Q Consensus       126 ~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~  205 (576)
                      +.++++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++++++++
T Consensus       117 ~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~  196 (700)
T PTZ00216        117 NETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKA  196 (700)
T ss_pred             CCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECchhhhHHHHhhhc--CCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCC--CCCC-CCCCCCCCCeEEE
Q 008134          206 LICDSKQLKKLSAVSSS--LKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGK--RSPV-DPSLPSQNGVAVI  280 (576)
Q Consensus       206 vi~~~~~~~~l~~~~~~--~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~a~i  280 (576)
                      +|++......+......  .+. ..+++++......      ...++.+.+|+++...+.  .... ...+..++|+++|
T Consensus       197 lv~~~~~~~~l~~~~~~~~~~~-~~ii~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  269 (700)
T PTZ00216        197 IVCNGKNVPNLLRLMKSGGMPN-TTIIYLDSLPASV------DTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALI  269 (700)
T ss_pred             EEECHHHHHHHHHhhhhccCCc-eEEEEECCCcccc------ccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEE
Confidence            99998766555443322  222 3556665432110      012456788999887652  1111 1234578999999


Q ss_pred             EeecCCCCCCceEEechHHHHHHHHHHHhhC----CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCccccccc
Q 008134          281 MYTSGSTGLPKGVMITHGNIVATAAAIKTLI----PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDT  356 (576)
Q Consensus       281 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~  356 (576)
                      +|||||||.||||++||+++++.+.+....+    ..+.++|++++++|++|.+++......+..|+++++.++..+.+.
T Consensus       270 iyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~  349 (700)
T PTZ00216        270 MYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDT  349 (700)
T ss_pred             EEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhh
Confidence            9999999999999999999999887765543    124678999999999999998766667888998888776665542


Q ss_pred             chhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHH
Q 008134          357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVF  436 (576)
Q Consensus       357 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (576)
                          .......+++++||++.++|++|+.+.+.........+.+.+++|.++++.++..+.      .+...++++.++|
T Consensus       350 ----~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~v~  419 (700)
T PTZ00216        350 ----FARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK------EGKDTPYWNEKVF  419 (700)
T ss_pred             ----hccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH------cCCCCchHHHHHH
Confidence                111122488899999999999999999988877777888999999999998887765      3445678899999


Q ss_pred             HHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCC
Q 008134          437 KSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEG  516 (576)
Q Consensus       437 ~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~  516 (576)
                      +++|+.+++++|.+++||+++++++.++++..++ +++|+||+||+++.++.....+...+++|+|++|++++|+|.++.
T Consensus       420 ~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~  498 (700)
T PTZ00216        420 SAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEY  498 (700)
T ss_pred             HHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhh
Confidence            9999999999999999999999999999888878 999999999998877766555556689999999999999995432


Q ss_pred             CCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       517 ~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .  ..+++++.|||+|+|++++.|||++|++|+++|  +++|  ||+|||+|++|+||.
T Consensus       499 ~--~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f--~~dG--w~~TGDig~~d~dG~  551 (700)
T PTZ00216        499 K--HTDTPEPRGEILLRGPFLFKGYYKQEELTREVL--DEDG--WFHTGDVGSIAANGT  551 (700)
T ss_pred             c--cCCCCCCCceEEEcCCcccchhcCChhHhhhhc--cccC--CeeccceEEEcCCCc
Confidence            1  124567789999999999999999999999999  6678  999999999999985

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.4e-65  Score=570.87  Aligned_cols=460  Identities=32%  Similarity=0.561  Sum_probs=382.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...+++++|+++++++|+++|+.++...        ++.      .+.++++||+||.++++++|++|+++|+++||+|
T Consensus        41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~--------~~~------~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~V  106 (651)
T PLN02736         41 PEIGTLHDNFVYAVETFRDYKYLGTRIRV--------DGT------VGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACV  106 (651)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence            55679999999999999999999753100        222      2345689999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +|+++|+++|+++++||+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....
T Consensus       107 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~  186 (651)
T PLN02736        107 GLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEP  186 (651)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchh
Confidence            99999999999999999999999999999999999999999999999999988877777766667777888776532110


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d  318 (576)
                      . .... ...+....+++++.......+.......++++++|+|||||||.||||++||+++++.+.+....+ ++.++|
T Consensus       187 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~d  263 (651)
T PLN02736        187 L-PSLP-SGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPSD  263 (651)
T ss_pred             h-hhhh-ccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCCC
Confidence            0 0000 001345678888876543333223445789999999999999999999999999999998888877 889999


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCceEEEC--CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYG--STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~--~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      ++++++|++|+++++.++.++..|+++++.  ++..+++.           |++++||+++++|++++.+.+........
T Consensus       264 ~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~~~vP~~~~~l~~~~~~~~~~  332 (651)
T PLN02736        264 VHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIFCSVPRLYNRIYDGITNAVKE  332 (651)
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEecchHHHHHHHHHHHHHHhc
Confidence            999999999999998888899999999883  34445555           99999999999999999999988888888


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecc
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA  476 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~  476 (576)
                      .+.++++++.++++.+...+..+     ....+.++++.++++++.+++++|.+++||+++++++.++++..+|+++++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~  407 (651)
T PLN02736        333 SGGLKERLFNAAYNAKKQALENG-----KNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEG  407 (651)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEE
Confidence            88899999999888876655411     1223467888899999999899999999999999999999998889999999


Q ss_pred             cCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      ||+||+++.++.........+++|+|+||++++|+|.+++.......+++.|||+|+||+++.|||++|+.|+++|  +.
T Consensus       408 YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~--~~  485 (651)
T PLN02736        408 YGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI--DE  485 (651)
T ss_pred             echHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh--cc
Confidence            9999998877666555556689999999999999996554433224456689999999999999999999999999  66


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||-
T Consensus       486 dg--w~~TGDlg~~d~dG~  502 (651)
T PLN02736        486 DG--WLHTGDIGLWLPGGR  502 (651)
T ss_pred             CC--CeeccceEEEcCCCc
Confidence            78  999999999999984

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=9.2e-65  Score=563.63  Aligned_cols=460  Identities=29%  Similarity=0.528  Sum_probs=368.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...|++++|+++++++|+++|+.++...        +++      .++++++||+||.++++++|++|+++|+++||+|
T Consensus        40 ~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~~------~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V  105 (660)
T PLN02861         40 ADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DSK------VGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRC  105 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            55679999999999999999999864211        221      2455689999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCC-CccEEEEecCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-TIKNVIYFENDGS  237 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~-~~~~vv~~~~~~~  237 (576)
                      +|+++|+++|+++++||+++|+++|||++.++.+++.+++++++++++|++.+..+.+.......+ .++.++.++....
T Consensus       106 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  185 (660)
T PLN02861        106 GIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSS  185 (660)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCCh
Confidence            999999999999999999999999999999999999999999999999998877665555444332 4677777764321


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCC----C
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP----N  313 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~----~  313 (576)
                      ....  .....+....+++++...+... ....+..++|+++|+|||||||.||||++||+++++.+......+.    .
T Consensus       186 ~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~  262 (660)
T PLN02861        186 EQKE--EAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRV  262 (660)
T ss_pred             hhhh--hhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhcccccccc
Confidence            1000  0001134567888877644321 1223456899999999999999999999999999988777665441    1


Q ss_pred             CCCCcEEEEecChHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +.++|++++++|++|.+++...+.+++.|+++++  .++..+.+.           |++++||+++++|++|+.+.....
T Consensus       263 ~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i~~~~~T~~~~vP~~~~~l~~~~~  331 (660)
T PLN02861        263 ATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMED-----------VQALKPTIFCGVPRVYDRIYTGIM  331 (660)
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------HHHhCCcEEeechHHHHHHHHHHH
Confidence            4788999999999999998776678999999988  444555555           999999999999999999998888


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC-
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-  470 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~-  470 (576)
                      .+....+.+.+++|+++++.++..+..+..  .....+.++.++++++|+.+++++|.+++||+++++++.+++ ..++ 
T Consensus       332 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~-~~~~~  408 (660)
T PLN02861        332 QKISSGGMLRKKLFDFAYNYKLGNLRKGLK--QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFL-RVTSC  408 (660)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHH-HHHcC
Confidence            888888889999999999999887753221  112245778889999999999999999999999999986644 4555 


Q ss_pred             CceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          471 APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      ..++|+||+||+++.++...... ...+++|+|+|+++++|+|.++.++.. .++++.|||+|+|++++.|||++|+.|+
T Consensus       409 ~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~~GEi~vrGp~v~~GY~~~pe~T~  487 (660)
T PLN02861        409 SVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVPRGEICLRGNTLFSGYHKRQDLTE  487 (660)
T ss_pred             CCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCCceeEEEcCCcccccccCCHHHHH
Confidence            47999999999987665443322 245899999999999999854433222 3456789999999999999999999999


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|   .+|  ||+|||+|++|+||.
T Consensus       488 ~~f---~dG--w~~TGDlg~~d~dG~  508 (660)
T PLN02861        488 EVL---IDG--WFHTGDIGEWQPNGA  508 (660)
T ss_pred             hhh---hcc--CcccCceEEECCCCc
Confidence            999   378  999999999999985

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.9e-63  Score=549.76  Aligned_cols=462  Identities=31%  Similarity=0.534  Sum_probs=374.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...|+.++|++.++++|+++|+.++...        ++.      .++++++||+||.++++++|++|+++|+++||+|
T Consensus        39 ~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V  104 (660)
T PLN02430         39 SDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRV  104 (660)
T ss_pred             CCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            56789999999999999999999875311        222      2456679999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-hHHHHhhhcCCCccEEEEecCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-KKLSAVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~l~~~~~~~~~~~~vv~~~~~~~  237 (576)
                      +|+++|+++|+++++||+++|+++||+++.++++++.+++++++++++|++.... +.+.......+.++.+|+++....
T Consensus       105 ~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~  184 (660)
T PLN02430        105 GIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTE  184 (660)
T ss_pred             EEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCCh
Confidence            9999999999999999999999999999999999999999999999999987643 333332233456777888764321


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC----CC
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI----PN  313 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~----~~  313 (576)
                      ....  .....+....+++++...+...+....+..++|+++|+|||||||.||||++||++++..+.......    ..
T Consensus       185 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~  262 (660)
T PLN02430        185 EESD--KASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDK  262 (660)
T ss_pred             HHhh--hhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccC
Confidence            1100  00011345678888886654333333445789999999999999999999999999998877654321    14


Q ss_pred             CCCCcEEEEecChHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      ++++|++++++|++|.++....+.++..|+++++  .++..+.+.           +.+++||++.++|++|+.+.+...
T Consensus       263 ~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~~~pt~~~~vP~~~~~l~~~i~  331 (660)
T PLN02430        263 MTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LMELKPTLLAGVPRVFERIHEGIQ  331 (660)
T ss_pred             CCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHHhCCcEEEecHHHHHHHHHHHH
Confidence            6789999999999999998876777899999987  334445555           999999999999999999999888


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ......+++++.+|+++++.+...+..+..  .....+++|.++++++|+.+|++||.+++||+++++++.++++...++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~  409 (660)
T PLN02430        332 KALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCA  409 (660)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCC
Confidence            878788889999999999999887764322  123466889999999999999999999999999999998877665457


Q ss_pred             ceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134          472 PIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~  550 (576)
                      .++++||+||+++..+...+.+ ...+++|+|+++++++|+|.++.++.+ .+.+..|||+|+|++++.|||++|+.|++
T Consensus       410 ~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GEi~vrg~~v~~GY~~~~e~t~~  488 (660)
T PLN02430        410 FVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGEICVRGKCLFSGYYKNPELTEE  488 (660)
T ss_pred             CeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcceEEecCCCccccccCChHHhhh
Confidence            8999999999988776655443 245899999999999999855554433 45567899999999999999999999999


Q ss_pred             hhcccccccceeeeCCeecccCccC
Q 008134          551 VYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       551 ~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|   .+|  ||+|||+|++|+||.
T Consensus       489 ~~---~dG--w~~TGDig~~d~dG~  508 (660)
T PLN02430        489 VM---KDG--WFHTGDIGEILPNGV  508 (660)
T ss_pred             hh---hcc--ceeccceEEECCCCc
Confidence            99   478  999999999999984

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-61  Score=614.58  Aligned_cols=445  Identities=16%  Similarity=0.198  Sum_probs=368.1

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .|++++|++..++.|...+..+++    ..++.  |..+   +++|++++++++++++..|+   ....+.+...+++++
T Consensus      3033 ~y~~~~~~~~~~~~~~~~~~~~l~----~~~~~--p~~~---~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l 3100 (3956)
T PRK12467       3033 SYDRQHFDAAAIERLAESFDRLLQ----AMLNN--PAAR---LGELPTLAAHERRQVLHAWN---ATAAAYPSERLVHQL 3100 (3956)
T ss_pred             EechhhCCHHHHHHHHHHHHHHHH----HHHhC--cCCc---hhhccCCCHHHHHHHHHhhc---cCCCCCCccccHHHH
Confidence            688999999999998888888777    33444  6666   99999999999999878777   555566666899999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++||++|+++            +++           ++||+||+++++++|+.|+++|+++|++|+|+++|+++
T Consensus      3101 ~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~ 3157 (3956)
T PRK12467       3101 IEAQVARTPEAPALVF------------GDQ-----------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVE 3157 (3956)
T ss_pred             HHHHHHhCCCcceEee------------CCc-----------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHH
Confidence            9999999999999987            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+++|+++|||+|.+|.+++.+++++++++++|++....+.+...    . ...++.++.             
T Consensus      3158 ~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~-~~~~~~~~~------------- 3219 (3956)
T PRK12467       3158 MIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----A-GDTALTLDR------------- 3219 (3956)
T ss_pred             HHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----c-CCceeeecc-------------
Confidence            9999999999999999999999999999999999999999998765433211    0 111222211             


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                                ..........+.....++++|||+|||||||+||||+++|+++++.+.+....+ +++++|++++++|++
T Consensus      3220 ----------~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 3288 (3956)
T PRK12467       3220 ----------LDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFS 3288 (3956)
T ss_pred             ----------hhhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCcc
Confidence                      111111112222456789999999999999999999999999999999999888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.+ ....+.     ..+++.|.++++|++.++|++++.+.+....               
T Consensus      3289 fd~~~~~~~~~L~~G~~l~i~~-~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------- 3347 (3956)
T PRK12467       3289 FDGAQERFLWTLICGGCLVVRD-NDLWDP-----EELWQAIHAHRISIACFPPAYLQQFAEDAGG--------------- 3347 (3956)
T ss_pred             HhHHHHHHHHHHhCCCEEEECC-cccCCH-----HHHHHHHHHcCCEEEEcCHHHHHHHHhcccc---------------
Confidence            9999999999999999999965 322222     2344559999999999999999988653110               


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (576)
                                                        ...++||.+++|||++++++.+.|.+.+ +++++|.||+|||++.+
T Consensus      3348 ----------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 3393 (3956)
T PRK12467       3348 ----------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTV 3393 (3956)
T ss_pred             ----------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeee
Confidence                                              0114899999999999999999998776 68899999999999877


Q ss_pred             cccCCCCC-----CCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc---cc
Q 008134          487 TFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF---HC  558 (576)
Q Consensus       487 ~~~~~~~~-----~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~---~g  558 (576)
                      +.......     ...++|+|++|++++|+| ++++.   +|+|++|||+|+|+++++||+|+|++|+++|+.++   +|
T Consensus      3394 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~---vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g 3469 (3956)
T PRK12467       3394 TLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNP---VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSG 3469 (3956)
T ss_pred             EEEecccccccCCCCCCCccccCCCEEEEEC-CCCCC---CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCC
Confidence            65433211     236899999999999999 66554   67999999999999999999999999999998775   47


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                      .|||||||+||||+||.
T Consensus      3470 ~r~yrTGDl~~~~~dG~ 3486 (3956)
T PRK12467       3470 GRLYRTGDLARYRADGV 3486 (3956)
T ss_pred             ceeeccchhheecCCCc
Confidence            79999999999999985

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=9e-61  Score=616.55  Aligned_cols=450  Identities=18%  Similarity=0.195  Sum_probs=370.3

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .||+++|++.++..|...+.++++.+    ++.  |..+   +++|++++++++++++..++   ....+++...+++++
T Consensus      3658 ~y~~~~~~~~~~~~l~~~f~~~L~~l----~~~--~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 3725 (4334)
T PRK05691       3658 SYDQRYFDAPTVERLLGEFKRLLLAL----VQG--FHGD---LSELPLLGEQERDFLLDGCN---RSERDYPLEQSYVRL 3725 (4334)
T ss_pred             EEchhhCCHHHHHHHHHHHHHHHHHH----HhC--cCCC---hhhcCCCCHHHHHHHHHhhC---CccCCCccccCHHHH
Confidence            68999999989988887777777733    333  5555   99999999999998888777   556666777899999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++||++|+++.           ++            .+||+||+++++++|+.|+++|+++|++|+|++++|++
T Consensus      3726 ~~~~~~~~p~~~Av~~~-----------~~------------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~ 3782 (4334)
T PRK05691       3726 FEAQVAAHPQRIAASCL-----------DQ------------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLD 3782 (4334)
T ss_pred             HHHHHHhCCCceEEEcC-----------CC------------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            99999999999999974           33            59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc--cEEEEecCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDGSEKDSGVSG  245 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~vv~~~~~~~~~~~~~~~  245 (576)
                      +++++|||+|+|++||||||.+|.+++.+++++++++++|++....+....+...+...  ..++..+            
T Consensus      3783 ~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 3850 (4334)
T PRK05691       3783 LLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE------------ 3850 (4334)
T ss_pred             HHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec------------
Confidence            99999999999999999999999999999999999999999987765444433222111  1111111            


Q ss_pred             CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecC
Q 008134          246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP  325 (576)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~p  325 (576)
                                 +..........+.....++++|||+|||||||+||||+++|+++++.+.+....+ +++++|+++++.+
T Consensus      3851 -----------~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s 3918 (4334)
T PRK05691       3851 -----------EVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTAS 3918 (4334)
T ss_pred             -----------ccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecC
Confidence                       1111111112222455789999999999999999999999999999999998888 9999999999999


Q ss_pred             hHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHH
Q 008134          326 LAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLF  405 (576)
Q Consensus       326 l~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~  405 (576)
                      ++|+.+++.++.+|+.|+++++.+.....+.     ..++..++++++|++.++|+++..++.....             
T Consensus      3919 ~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~-----~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~------------- 3980 (4334)
T PRK05691       3919 QSFDISVWQFLAAPLFGARVEIVPNAIAHDP-----QGLLAHVQAQGITVLESVPSLIQGMLAEDRQ------------- 3980 (4334)
T ss_pred             CchhHHHHHHHHHHhCCCEEEEcCccccCCH-----HHHHHHHHHcCCeEEEeCHHHHHHHHhhccc-------------
Confidence            9999999999999999999999654433322     2244459999999999999999887653110             


Q ss_pred             HHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccC
Q 008134          406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCA  484 (576)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~  484 (576)
                                                           ..++||.+++|||++++++.++|.+.+ +++++|.||+|||+.
T Consensus      3981 -------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~ 4023 (4334)
T PRK05691       3981 -------------------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSD 4023 (4334)
T ss_pred             -------------------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCcccee
Confidence                                                 014899999999999999999887664 789999999999998


Q ss_pred             CccccCCCC----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc---c
Q 008134          485 GSTFSEWDD----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF---H  557 (576)
Q Consensus       485 ~~~~~~~~~----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~---~  557 (576)
                      .+++.....    ....++|+|++|++++|+| +.++.   +|.|.+|||||+|+++++||+|+|++|+++|+.+|   +
T Consensus      4024 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~---~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~ 4099 (4334)
T PRK05691       4024 DVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALEL---VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAP 4099 (4334)
T ss_pred             EEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCC---CCCCCceEEEEecccccccccCCcccchhhcccCCCCCC
Confidence            776543322    2235899999999999998 55544   67999999999999999999999999999998876   4


Q ss_pred             ccceeeeCCeecccCccC
Q 008134          558 CVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~e  575 (576)
                      |.|||||||+|||++||+
T Consensus      4100 ~~~~yrTGDl~~~~~dG~ 4117 (4334)
T PRK05691       4100 GERLYRTGDLARRRSDGV 4117 (4334)
T ss_pred             CceeeccCcceeecCCCc
Confidence            679999999999999986

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=8.1e-60  Score=602.70  Aligned_cols=449  Identities=17%  Similarity=0.191  Sum_probs=366.4

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .||+++|++..+..|...+..+++.    .++.  |..+   +++++++++.++++++..|+   .+..+++...+++++
T Consensus      1512 ~y~~~lf~~~~i~~l~~~~~~lL~~----l~~~--p~~~---~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 1579 (3956)
T PRK12467       1512 TYATDLFEASTIERLAGHWLNLLQG----LVAD--PERR---LGELDLLDEAERRQILEGWN---ATHTGYPLARLVHQL 1579 (3956)
T ss_pred             EEeCCcCCHHHHHHHHHHHHHHHHH----HhhC--ccCc---eeeccccchHHhhhhHHhhc---CCccCCCccccHHHH
Confidence            6888999988888887777777773    3344  5555   99999999999999888777   555555666799999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++|+++|+++            +++           .+||+||+++++++|++|+++|+++|++|+++++|+++
T Consensus      1580 ~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~ 1636 (3956)
T PRK12467       1580 IEDQAAATPEAVALVF------------GEQ-----------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLE 1636 (3956)
T ss_pred             HHHHHHhCCCCeEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHH
Confidence            9999999999999987            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+|+|++++||||.+|.+++.+++++++++++|++......+..    .... .++.++...           
T Consensus      1637 ~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~----------- 1700 (3956)
T PRK12467       1637 MVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL----PDGL-RSLVLDQED----------- 1700 (3956)
T ss_pred             HHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc----ccCC-cEEEecccc-----------
Confidence            999999999999999999999999999999999999999998765443321    1111 222222110           


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                               ++.. ......+.....++++|||+|||||||+||||+++|+++++.+.+....+ +++++|++++++|++
T Consensus      1701 ---------~~~~-~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 1769 (3956)
T PRK12467       1701 ---------DWLE-GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFA 1769 (3956)
T ss_pred             ---------chhc-cCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCcc
Confidence                     0000 01111122345689999999999999999999999999999999988888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.++....+.     ..+.+.|+++++|++.++|++++.+.......              
T Consensus      1770 fd~~~~~~~~~L~~G~~lvi~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-------------- 1830 (3956)
T PRK12467       1770 FDVSVWELFWPLINGARLVIAPPGAHRDP-----EQLIQLIERQQVTTLHFVPSMLQQLLQMDEQV-------------- 1830 (3956)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcChhhcCCH-----HHHHHHHHHcCCeEEECCHHHHHHHHhhcccc--------------
Confidence            99999999999999999999654433322     23444499999999999999999887531100              


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (576)
                                                        ...++||.+++|||++++++.+.|.+.+ +++++|.||+||+++.+
T Consensus      1831 ----------------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 1876 (3956)
T PRK12467       1831 ----------------------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDV 1876 (3956)
T ss_pred             ----------------------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeE
Confidence                                              0014899999999999999999887766 57899999999999877


Q ss_pred             cccCCC-----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc---c
Q 008134          487 TFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH---C  558 (576)
Q Consensus       487 ~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~---g  558 (576)
                      +.....     .....++|+|++|++++|+| ++++.   +|+|++|||+|+|+++++||+|+|+.|+++|+.+|.   |
T Consensus      1877 t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~---vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~ 1952 (3956)
T PRK12467       1877 THWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNP---VPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVG 1952 (3956)
T ss_pred             EEEeccccccccCCCCCcccccCCCEEEEEC-CCCCC---CCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCC
Confidence            654332     12246899999999999999 55554   679999999999999999999999999999987763   5


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                      .|||||||+|||++||.
T Consensus      1953 ~r~yrTGDl~~~~~dG~ 1969 (3956)
T PRK12467       1953 SRLYRTGDLARYRADGV 1969 (3956)
T ss_pred             ccceeccceEEECCCCC
Confidence            68999999999999985

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=4.8e-59  Score=557.70  Aligned_cols=446  Identities=18%  Similarity=0.177  Sum_probs=357.4

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .|++++|++..+..+...+..+++    ..++.  |..+   ++++++++..++++ +..++   ....+.+. .+++++
T Consensus       398 ~y~~~~f~~~~i~~l~~~~~~ll~----~~~~~--p~~~---i~~~~~~~~~~~~~-~~~~~---~~~~~~~~-~~l~~~  463 (1296)
T PRK10252        398 LANPQRYDEATLIAHAERLKALIA----QFAAD--PALL---CGDVDILLPGEYAQ-LAQVN---ATAVEIPE-TTLSAL  463 (1296)
T ss_pred             EEChhhCCHHHHHHHHHHHHHHHH----HHHhC--CCCC---hhhcCCCCHHHHHH-HHHhc---CCCCCCCc-CCHHHH
Confidence            577788887777776655555555    22333  5555   99999999998887 44444   34445554 689999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++|+++|+++            +++           .+||+||.++++++|+.|.+.|+++|++|+++++|+++
T Consensus       464 ~~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~  520 (1296)
T PRK10252        464 VAQQAAKTPDAPALAD------------ARY-----------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVF  520 (1296)
T ss_pred             HHHHHHhCCCCeEEEc------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            9999999999999986            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      ++++++||+++|++++||+|.++.+++.+++++++++++|++......+...    +... +                  
T Consensus       521 ~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~-~------------------  577 (1296)
T PRK10252        521 LTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----PDLT-S------------------  577 (1296)
T ss_pred             HHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----CCce-e------------------
Confidence            9999999999999999999999999999999999999999998765443221    1110 1                  


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                           ..+.+....  ....+.....+++++||+|||||||.||||+++|+++++.+.+....+ ++.++|++++.+|++
T Consensus       578 -----~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~  649 (1296)
T PRK10252        578 -----LCYNAPLAP--QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCS  649 (1296)
T ss_pred             -----eeccccccc--ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcc
Confidence                 111111000  011111233678999999999999999999999999999999999888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.++....+.     ..+...++++++|++.++|+++..+..........           
T Consensus       650 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~-----------  713 (1296)
T PRK10252        650 FDVSVWEFFWPFIAGAKLVMAEPEAHRDP-----LAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR-----------  713 (1296)
T ss_pred             hhhhHHHHHHHHhCCCEEEECChhccCCH-----HHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc-----------
Confidence            99999999999999999999655433332     23444599999999999999999886542110000           


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCcc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST  487 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  487 (576)
                                                        ...+++|.+++|||++++++.+.|.+.++++++|.||+||++..++
T Consensus       714 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  759 (1296)
T PRK10252        714 ----------------------------------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVS  759 (1296)
T ss_pred             ----------------------------------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheee
Confidence                                              0014899999999999999999999888999999999999987766


Q ss_pred             ccCCCC-------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cc
Q 008134          488 FSEWDD-------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HC  558 (576)
Q Consensus       488 ~~~~~~-------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g  558 (576)
                      ......       ....++|+|++|++++|+| ++++.   +++|+.|||+|+|+++++||+++|+.|+++|+.++  +|
T Consensus       760 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~  835 (1296)
T PRK10252        760 WYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRP---VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPG  835 (1296)
T ss_pred             eeecccccccccCCCCCCcccccCCCEEEEEC-CCCCC---CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCC
Confidence            543321       2346899999999999999 66654   67999999999999999999999999999997765  46


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                      .+||||||+|++|+||.
T Consensus       836 ~~~y~TGDl~~~~~~G~  852 (1296)
T PRK10252        836 ERMYRTGDVARWLDDGA  852 (1296)
T ss_pred             CEEEecCceEEEcCCCc
Confidence            78999999999999885

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4e-59  Score=605.33  Aligned_cols=447  Identities=17%  Similarity=0.191  Sum_probs=363.4

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .|++++|++..+..|..++..+++.    .++.  |..+   +++++++++.++++++..|+   ....+++...+++++
T Consensus      1941 ~y~~~~~~~~~~~~~~~~~~~~l~~----~~~~--~~~~---~~~l~~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 2008 (5163)
T PRK12316       1941 SYDRGHFDAAAIERLDRHLLHLLEQ----MAED--AQAA---LGELALLDAGERQRILADWD---RTPEAYPRGPGVHQR 2008 (5163)
T ss_pred             ecChhhCCHHHHHHHHHHHHHHHHH----HHhC--cccc---cccccCCCHHHHHHHHHhcC---CCCCCCCCCCCHHHH
Confidence            6899999999999988888888773    3334  5555   99999999999998877676   455555666799999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++|+++|+++            +++           ++||+||+++++++|++|+++|+++|++|+|+++|+++
T Consensus      2009 ~~~~a~~~p~~~A~~~------------~~~-----------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~ 2065 (5163)
T PRK12316       2009 IAEQAARAPEAIAVVF------------GDQ-----------HLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFE 2065 (5163)
T ss_pred             HHHHHHhCCCCeEEEc------------CCC-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            9999999999999986            332           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+|+|+++|||||.+|.+++.+++++++++++|++......+..    ..... .+.++..            
T Consensus      2066 ~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~------------ 2128 (5163)
T PRK12316       2066 LVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVA-RLPLDRD------------ 2128 (5163)
T ss_pred             HHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccc-eEeccch------------
Confidence            999999999999999999999999999999999999999998875543211    00111 1111110            


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                              .++...  ....+.....+++++||+|||||||+||||+++|+++++.+.+....+ .++++|++++++|++
T Consensus      2129 --------~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 2197 (5163)
T PRK12316       2129 --------AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADCELQFMSFS 2197 (5163)
T ss_pred             --------hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcceEEEecCch
Confidence                    001100  111122446789999999999999999999999999999999998888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.+.. ..+     +..+...++++++|+++++|++++.+........             
T Consensus      2198 fd~~~~~~~~~L~~G~~~~~~~~~-~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------- 2258 (5163)
T PRK12316       2198 FDGAHEQWFHPLLNGARVLIRDDE-LWD-----PEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG------------- 2258 (5163)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCcc-cCC-----HHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-------------
Confidence            999999999999999999774322 111     1223444999999999999999998876321100             


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (576)
                                                         ...+||.+++|||++++++.+.|.+.+ +.+++|.||+|||++.+
T Consensus      2259 -----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 2303 (5163)
T PRK12316       2259 -----------------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTP 2303 (5163)
T ss_pred             -----------------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeee
Confidence                                               013799999999999999999998765 68899999999998877


Q ss_pred             cccCCCCC-----CCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc---cc
Q 008134          487 TFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF---HC  558 (576)
Q Consensus       487 ~~~~~~~~-----~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~---~g  558 (576)
                      +.......     ...++|+|++|++++|+| ++++.   +|+|++|||||+|+++++||+|+|++|+++|+.++   .|
T Consensus      2304 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~ 2379 (5163)
T PRK12316       2304 LLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNL---LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379 (5163)
T ss_pred             eeeecccccccCCCcCCcccccCCCEEEEEC-CCCCC---CCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCC
Confidence            65433221     125899999999999999 55543   67999999999999999999999999999998775   36


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                      .+||||||+||+|+||.
T Consensus      2380 ~~~yrTGDl~~~~~dG~ 2396 (5163)
T PRK12316       2380 ERLYRTGDLARYRADGV 2396 (5163)
T ss_pred             CeeEecccEEEEcCCCc
Confidence            78999999999999985

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.6e-59  Score=602.23  Aligned_cols=441  Identities=17%  Similarity=0.201  Sum_probs=365.7

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .||+++|++..++.|...+..+++.    .++.  |..+   +.+++++++.++++++..|+   ....+.+...+++++
T Consensus      2995 ~y~~~~~~~~~i~~l~~~f~~lL~~----l~~~--p~~~---i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 3062 (5163)
T PRK12316       2995 TYATDLFDARTVERLARHWQNLLRG----MVEN--PQRS---VDELAMLDAEERGQLLEAWN---ATAAEYPLERGVHRL 3062 (5163)
T ss_pred             EECcCCCCHHHHHHHHHHHHHHHHH----HHhC--CCCc---hhhccCCCHHHHHHHHHHhC---CCCcCCCCcCCHHHH
Confidence            6888999988888877777777772    3334  5555   99999999999999888777   556666766899999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++|+++|+.+.            +           +.+||+||.++++++|++|++.|+++|++|+|+++|+++
T Consensus      3063 ~~~~~~~~p~~~Av~~~------------~-----------~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~ 3119 (5163)
T PRK12316       3063 FEEQVERTPDAVALAFG------------E-----------QRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLE 3119 (5163)
T ss_pred             HHHHHHhCCCCeeEeeC------------C-----------eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHH
Confidence            99999999999999873            3           269999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+|+|+++|||+|.+|.+++.+++++++++++|++...  .    ...... ..++.++....          
T Consensus      3120 ~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~--~----~~~~~~-~~~~~~~~~~~---------- 3182 (5163)
T PRK12316       3120 MVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL--R----LPLAQG-VQVLDLDRGDE---------- 3182 (5163)
T ss_pred             HHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc--c----CCccCC-ccEEEeccccc----------
Confidence            999999999999999999999999999999999999999998754  1    111111 12222222110          


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                                    ......+.....++++|||+|||||||+||||+++|+++.+.+.+....+ +++++|++++++|++
T Consensus      3183 --------------~~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 3247 (5163)
T PRK12316       3183 --------------NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAY-GLGVGDRVLQFTTFS 3247 (5163)
T ss_pred             --------------cccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhh-CCCcccEEEeecCcc
Confidence                          00111223445789999999999999999999999999999999999888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.++....+.     ..+...++++++|++.++|+++..+.+....               
T Consensus      3248 fd~~~~~i~~~L~~G~~l~~~~~~~~~~~-----~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~--------------- 3307 (5163)
T PRK12316       3248 FDVFVEELFWPLMSGARVVLAGPEDWRDP-----ALLVELINSEGVDVLHAYPSMLQAFLEEEDA--------------- 3307 (5163)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcChhhcCCH-----HHHHHHHHHcCCcEEEcCHHHHHHHHhcccc---------------
Confidence            99999999999999999999665544333     2334448899999999999999887653110               


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCcc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST  487 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  487 (576)
                                                        ...++||.+++|||++++++.++|.  .+++++|.||+|||++.++
T Consensus      3308 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~--~~~~l~n~YG~TE~~~~~~ 3351 (5163)
T PRK12316       3308 ----------------------------------HRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVT 3351 (5163)
T ss_pred             ----------------------------------ccCCcceEEEEccccCCHHHHHHHH--hCCcEeeccCCCccEeeEe
Confidence                                              0114899999999999999999998  4789999999999998877


Q ss_pred             ccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cccceee
Q 008134          488 FSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HCVWMLC  563 (576)
Q Consensus       488 ~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g~~~~~  563 (576)
                      .....  .....+||+|++|++++|+| ++++.   +|+|++|||+|+|+++++||+|+|++|+++|+.++  +|.||||
T Consensus      3352 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~ 3427 (5163)
T PRK12316       3352 HWQCVEEGKDAVPIGRPIANRACYILD-GSLEP---VPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYR 3427 (5163)
T ss_pred             EEeccCCCCCCCccceecCCCEEEEEC-CCCCC---CCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEe
Confidence            65442  23347999999999999999 66554   67999999999999999999999999999998775  5778999


Q ss_pred             eCCeecccCccC
Q 008134          564 ICLYVSCDKTLE  575 (576)
Q Consensus       564 TGDlg~~d~d~e  575 (576)
                      |||+||+++||.
T Consensus      3428 TGDl~~~~~dG~ 3439 (5163)
T PRK12316       3428 TGDLARYRADGV 3439 (5163)
T ss_pred             cCceEEECCCCC
Confidence            999999999985

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=5e-58  Score=449.81  Aligned_cols=402  Identities=22%  Similarity=0.285  Sum_probs=339.5

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      ...|+.. .|+.++++-.+++.||+.|+++..          .|.           ++||+|+.+.++++|++|..+|++
T Consensus        43 ~~ipl~~-~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~  100 (596)
T KOG1177|consen   43 SQIPLDS-ETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLK  100 (596)
T ss_pred             CCCCccc-ccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCC
Confidence            3445554 799999999999999999999854          443           599999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhh-------
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-------  221 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-------  221 (576)
                      +||||++..||+.+|+..+|||.++|.+.|++||.+..+++++.|+..+++++|+...+.     +.+.++.+       
T Consensus       101 kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~  180 (596)
T KOG1177|consen  101 KGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDP  180 (596)
T ss_pred             CCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999987543     33333321       


Q ss_pred             ------cCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCC-----CCCCCCCCeEEEEeecCCCCCC
Q 008134          222 ------SLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-----PSLPSQNGVAVIMYTSGSTGLP  290 (576)
Q Consensus       222 ------~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~P  290 (576)
                            .++.+.++|..+++.+           -...+.++|++..+......     .....|+|++.|.|||||||.|
T Consensus       181 G~lkS~~lp~lthvi~~~ed~~-----------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~P  249 (596)
T KOG1177|consen  181 GQLKSELLPELTHVILADEDHP-----------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAP  249 (596)
T ss_pred             ccccccccccceEEEecCCCCc-----------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCC
Confidence                  3567888888775433           23457788888766553322     1455789999999999999999


Q ss_pred             ceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEE----CCcccccccchhhccCcc
Q 008134          291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTK  365 (576)
Q Consensus       291 KgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~----~~~~~l~~~~~~~~~~~~  365 (576)
                      ||+.+||-+++++......++ ++.++++++...|++|.+|... .+++|..|+++++    +++...++.         
T Consensus       250 KgatLsH~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa---------  319 (596)
T KOG1177|consen  250 KGATLSHYNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA---------  319 (596)
T ss_pred             cceeeehhhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH---------
Confidence            999999999999999999999 9999999999999999999665 7889999999999    566666666         


Q ss_pred             ccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCC
Q 008134          366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG  445 (576)
Q Consensus       366 ~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  445 (576)
                        |.++|+|.++++|+|+..++...+...                                               ...+
T Consensus       320 --i~~ekcT~l~gtPtM~~Dlln~~~~~~-----------------------------------------------~~~s  350 (596)
T KOG1177|consen  320 --ISNEKCTTLYGTPTMFVDLLNIPQKQQ-----------------------------------------------VDLS  350 (596)
T ss_pred             --HHhhceEEEecChHHHHHHhcchhhcc-----------------------------------------------Cchh
Confidence              999999999999999999986543211                                               1124


Q ss_pred             cEEEEEEcCCCCCHHHHHHHHhhhCCc-eecccCcccccCCccccCCCCCC---CCccCCCCCCcEEEEeecCCCCCcCC
Q 008134          446 RIRFMICGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTS  521 (576)
Q Consensus       446 ~Lr~v~~gG~~l~~~~~~~~~~~~~~~-l~~~YG~TE~~~~~~~~~~~~~~---~~~vG~p~~~~~~~ivd~~~~~~~~~  521 (576)
                      ++|..+.||+++|+++.+.+....++. +...||+||++.+.+...+.+..   .-++|+.+++.+..|+| .+|..   
T Consensus       351 ~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~---  426 (596)
T KOG1177|consen  351 SLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSE---  426 (596)
T ss_pred             hhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCc---
Confidence            899999999999999999888766554 66799999999887777665543   37999999999999999 66655   


Q ss_pred             CCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          522 DKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       522 ~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|.|..||||+||.+++.|||++++.|.++.    ..+|||+|||+|++|+||-
T Consensus       427 v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti----~~drW~~TGDi~~m~enG~  476 (596)
T KOG1177|consen  427 VPLGTKGELLIRGYSTMLGYWGEEEKTKETI----GNDRWYDTGDIAVMDENGT  476 (596)
T ss_pred             cccCCCceEEEEechhheeecCCcccchhhc----ccccceecCceEEEcCCCc
Confidence            5688899999999999999999999999887    5567999999999999983

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-57  Score=492.09  Aligned_cols=396  Identities=29%  Similarity=0.399  Sum_probs=319.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 008134           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (576)
Q Consensus        80 ~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (576)
                      ...++.++++++++++|+++|+.+.            ++       .  .++||+||.++++++|++|+++|+++||+|+
T Consensus         9 ~~~~~~~~l~~~a~~~~~~~a~~~~------------~~-------~--~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVa   67 (534)
T COG0318           9 AELTLASLLERAARRNPDRPALIFL------------GR-------G--GRLTYRELDRRANRLAAALQALGVKPGDRVA   67 (534)
T ss_pred             ccccHHHHHHHHHHhCCCceEEEEc------------CC-------C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            3479999999999999999999983            32       0  1499999999999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCC
Q 008134          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (576)
Q Consensus       160 i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~  239 (576)
                      |+++|+++++++++||+++|++++|+||.+..+++.++++++++++++++....+.+.......+....++.........
T Consensus        68 il~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (534)
T COG0318          68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL  147 (534)
T ss_pred             EECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc
Confidence            99999999999999999999999999999999999999999999999999885555555543332222222221111000


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC--CCCC
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN--PGRS  317 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~~  317 (576)
                                 . .+++++...............++++++|+|||||||.||||++||+|++.+.......+ .  +++.
T Consensus       148 -----------~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~  214 (534)
T COG0318         148 -----------P-ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPD  214 (534)
T ss_pred             -----------c-ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCC
Confidence                       0 24555533222222222336799999999999999999999999999999988888888 6  8999


Q ss_pred             cEEEEecChHHHHHHHHHHH-HHHhCceEEECC-----cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          318 DVYLAYLPLAHVLELAAESI-MLCAGCAIGYGS-----TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~~~~-~l~~G~~~~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      |++++.+|++|++|+...+. +++.|+++++..     +..+...           +.++++|++.++|+++..++.+..
T Consensus       215 d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~-----------i~~~~~t~~~~vPt~~~~ll~~~~  283 (534)
T COG0318         215 DVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL-----------IEKYKVTVLSGVPTFLRELLDNPE  283 (534)
T ss_pred             ceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH-----------HHHhcceEEecchHHHHHHHhCCc
Confidence            99999999999999998555 499999998844     3334444           888899999999999999877532


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCC-cEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG-RIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                      .....                                               .. +||.+++||+++++++.++|++.++
T Consensus       284 ~~~~~-----------------------------------------------~~~~lr~~~~gg~~~~~~~~~~~~~~~~  316 (534)
T COG0318         284 KDDDD-----------------------------------------------LSSSLRLVLSGGAPLPPELLERFEERFG  316 (534)
T ss_pred             cCccc-----------------------------------------------cccceEEEEecCCcCCHHHHHHHHHHhC
Confidence            21100                                               01 3999999999999999999999997


Q ss_pred             -CceecccCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          471 -APIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       471 -~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                       ..+++.||+||++..++.....+  ...+++|+|+||++++|+|++++..   .| |.+|||+|+||+++.|||++|+.
T Consensus       317 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~---~p-g~vGei~irgp~v~~GY~~~pe~  392 (534)
T COG0318         317 PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEV---LP-GEVGEIWVRGPNVMKGYWNRPEA  392 (534)
T ss_pred             CCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCcc---CC-CCceEEEEECchhhhhhcCChHH
Confidence             57999999999998877776665  3557889999999999999544422   33 88999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++|  +.+|  ||+|||+|++|+||.
T Consensus       393 t~~~f--~~~g--W~~TGDlg~~d~~G~  416 (534)
T COG0318         393 TAEAF--DEDG--WLRTGDLGYVDEDGY  416 (534)
T ss_pred             HHHhh--ccCC--eeeecceEEEcCCcc
Confidence            99988  3357  999999999999974

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2e-57  Score=477.68  Aligned_cols=370  Identities=25%  Similarity=0.330  Sum_probs=307.3

Q ss_pred             EeeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134          130 WQTYGEVFDRACSFASGLVNFG--HNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI  207 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~G--v~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  207 (576)
                      .+||+|+.+++.++|.+|.++|  +++||+|++++||+++++++++||+.+|+++.|+||.+.+.++.+++++++++++|
T Consensus        45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif  124 (537)
T KOG1176|consen   45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF  124 (537)
T ss_pred             EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence            7999999999999999999875  89999999999999999999999999999999999999999999999999999999


Q ss_pred             ECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEee-hHHHHHcCCCCCCCCCCCCCCCeEEEEeecCC
Q 008134          208 CDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSS-FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGS  286 (576)
Q Consensus       208 ~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGT  286 (576)
                      ++.+..+.+.+....+.  ..++++.......     .......... +.++...+....  ..+...+|++.|+|||||
T Consensus       125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGT  195 (537)
T KOG1176|consen  125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVI-----SISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGT  195 (537)
T ss_pred             EcCchHHHHHHHHhhcC--CceEEEecccCcc-----ccccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCC
Confidence            99999998887765554  4444444331100     0000111112 444333322222  456678999999999999


Q ss_pred             CCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhC-ceEEE---CCcccccccchhhcc
Q 008134          287 TGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG-CAIGY---GSTLTMTDTSSKIKK  362 (576)
Q Consensus       287 TG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G-~~~~~---~~~~~l~~~~~~~~~  362 (576)
                      ||.||||++||++++.+........ .+...|+.++.+|++|..|++.++.+++.| +++++   +++..+++.      
T Consensus       196 Tg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~------  268 (537)
T KOG1176|consen  196 TGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL------  268 (537)
T ss_pred             CCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH------
Confidence            9999999999999999988777666 777899999999999999999987755554 45544   576777777      


Q ss_pred             CccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHH
Q 008134          363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV  442 (576)
Q Consensus       363 ~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  442 (576)
                           |++|++|+++++|.++..|......                                               .+.
T Consensus       269 -----i~kykvt~~~~vP~~~~~l~~~p~~-----------------------------------------------~~~  296 (537)
T KOG1176|consen  269 -----IEKYKVTHLFLVPPVLNMLAKSPIV-----------------------------------------------KKY  296 (537)
T ss_pred             -----HHHhCEEEEEcChHHHHHHhcCCcc-----------------------------------------------Ccc
Confidence                 9999999999999999998774311                                               011


Q ss_pred             hCCcEEEEEEcCCCCCHHHHHHHHhhhC-CceecccCcccccCCccccCCCCC-CCCccCCCCCCcEEEEeecCCCCCcC
Q 008134          443 LGGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-SVGRVGPPVPCCYIKLVSWDEGGYKT  520 (576)
Q Consensus       443 ~~~~Lr~v~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~~~~~~~ivd~~~~~~~~  520 (576)
                      ..+++|.+.+||+++++++.++++++++ ..+.++||+||+++.++.+...+. +++++|+++++++.+|.+ ++|..  
T Consensus       297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~--  373 (537)
T KOG1176|consen  297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVS--  373 (537)
T ss_pred             cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCC--
Confidence            2369999999999999999999999997 889999999999988887776664 779999999998988887 77766  


Q ss_pred             CCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       521 ~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       +++++.||||++|++++.|||+||++|++.|  +.+|  ||+|||+|++|+||+
T Consensus       374 -l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~--~~~G--W~~TGDiGy~D~DG~  423 (537)
T KOG1176|consen  374 -LGPNQTGEICVRGPQVMKGYLKNPEATKEAF--DDDG--WFHTGDLGYFDEDGY  423 (537)
T ss_pred             -CCCCCceEEEEECcccchhhcCChHHHHhhc--ccCC--ccccCceEEEcCCCe
Confidence             5699999999999999999999999999999  5558  999999999999986

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.8e-57  Score=546.37  Aligned_cols=473  Identities=15%  Similarity=0.108  Sum_probs=349.9

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCC-CCCHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKG-ASTMAA   86 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~tl~~   86 (576)
                      .||.++|+++++..+..++..+++    ...+.  |..+   +.+++++++.+++.+... .    ....++. ..++++
T Consensus       175 ~y~~~lf~~~~i~~l~~~f~~lL~----~~~~~--p~~~---l~~l~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~  240 (1389)
T TIGR03443       175 YYNSLLFSSDRITIVADQLAQLLS----AASSN--PDEP---IGKVSLITPSQKSLLPDP-T----KDLDWSGFRGAIHD  240 (1389)
T ss_pred             EEchhcCCHHHHHHHHHHHHHHHH----HHHhC--cCCc---eecccCCCHHHHhhhhcc-c----cccCcCcccCcHHH
Confidence            688888888888887777766666    22334  6666   999999998887654321 1    1122222 368999


Q ss_pred             HHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 008134           87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV  166 (576)
Q Consensus        87 ~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~  166 (576)
                      +|+++++++||++|+++.....       +.       ....+++||+||.++++++|++|++.|+++|++|+|+++|++
T Consensus       241 ~~~~~a~~~pd~~A~~~~~~~~-------~~-------~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~  306 (1389)
T TIGR03443       241 IFADNAEKHPDRTCVVETPSFL-------DP-------SSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGV  306 (1389)
T ss_pred             HHHHHHHhCCCCeEEEeccccc-------cc-------cCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCH
Confidence            9999999999999998632100       00       012257999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---hHHHHhhhc----CCCccEEEEecCCCCCC
Q 008134          167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---KKLSAVSSS----LKTIKNVIYFENDGSEK  239 (576)
Q Consensus       167 ~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~l~~~~~~----~~~~~~vv~~~~~~~~~  239 (576)
                      ++++++|||+++|++++|++|.++.+++.+++++++++++|+.....   ..+......    ...+..+...+......
T Consensus       307 ~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (1389)
T TIGR03443       307 DLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG  386 (1389)
T ss_pred             HHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc
Confidence            99999999999999999999999999999999999999999876421   111111110    00111111111100000


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCC--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCC
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  317 (576)
                       .       ... ....+......  ..........+++++||+|||||||.||||+++|+++++.+.+....+ ++.++
T Consensus       387 -~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~  456 (1389)
T TIGR03443       387 -G-------SLE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSEN  456 (1389)
T ss_pred             -c-------ccc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCC
Confidence             0       000 00000000000  001111234678999999999999999999999999999998888888 89999


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      |++++++|++|+.+++.++.+|+.|+++++.+.....+.     ..+.+.|+++++|+++++|++++.+......     
T Consensus       457 d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----  526 (1389)
T TIGR03443       457 DKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTP-----GRLAEWMAKYGATVTHLTPAMGQLLSAQATT-----  526 (1389)
T ss_pred             CEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCH-----HHHHHHHHHhCCeEEEeCHHHHHHHHhcccc-----
Confidence            999999999999999999999999999999654433222     2244459999999999999999887542100     


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (576)
                                                                   ..++||.+++||+++++.+.+.+.... +++++|.
T Consensus       527 ---------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~  561 (1389)
T TIGR03443       527 ---------------------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNM  561 (1389)
T ss_pred             ---------------------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEEC
Confidence                                                         014899999999999999988887764 7899999


Q ss_pred             cCcccccCCccccCCCC-----------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCc
Q 008134          477 YGLTETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP  545 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~  545 (576)
                      ||+||++..++......           ....++|+|++|++++|+|.++ .. .++++|.+|||||+|+++++||+|+|
T Consensus       562 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~-~~-~~~~~G~~GEL~i~G~~v~~GY~~~p  639 (1389)
T TIGR03443       562 YGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRND-RT-QTCGVGEVGEIYVRAGGLAEGYLGLP  639 (1389)
T ss_pred             ccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCcc-CC-CcCCCCCceEEEecccccchhcCCCh
Confidence            99999987766433211           1236899999999999999433 22 22789999999999999999999999


Q ss_pred             ccchhhhcccc------------------------cccceeeeCCeecccCccC
Q 008134          546 GKTSEVYKVNF------------------------HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       546 ~~t~~~f~~~~------------------------~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|+++|+.++                        ++.+||||||+|++|+||.
T Consensus       640 ~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~  693 (1389)
T TIGR03443       640 ELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN  693 (1389)
T ss_pred             hHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence            99999996542                        1346999999999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.4e-57  Score=584.97  Aligned_cols=444  Identities=19%  Similarity=0.210  Sum_probs=357.3

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .|++++|+...++.|...+..+++.    ..+.  |..+   ++++++++..+++++..++.   ..  +.+...+++++
T Consensus      1071 ~y~~~~~~~~~i~~l~~~~~~~l~~----~~~~--p~~~---~~~l~l~~~~~~~~l~~~~~---~~--~~~~~~~l~~~ 1136 (4334)
T PRK05691       1071 DYAAELFDAATIERLAEHFLALLEQ----VCED--PQRA---LGDVQLLDAAERAQLAQWGQ---AP--CAPAQAWLPEL 1136 (4334)
T ss_pred             EEchhhCCHHHHHHHHHHHHHHHHH----HHhC--cccc---hhhhcCCCHHHHHHHHhccC---CC--CCCccCCHHHH
Confidence            5778888877777776666666662    2234  5555   99999999999988654433   11  12334789999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++|+++|+.+            +++           .+||+||.++++++|++|+++|+++|++|+++++|+++
T Consensus      1137 ~~~~a~~~p~~~Al~~------------~~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~ 1193 (4334)
T PRK05691       1137 LNEQARQTPERIALVW------------DGG-----------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQ 1193 (4334)
T ss_pred             HHHHHHhCCCCeEEEE------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            9999999999999987            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+|+|+++|||+|.+|.+++.+++++++++++|++......+...    ... .++.++...           
T Consensus      1194 ~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~----------- 1257 (4334)
T PRK05691       1194 LLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----EGV-SAIALDSLH----------- 1257 (4334)
T ss_pred             HHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----cCc-eEEeecccc-----------
Confidence            9999999999999999999999999999999999999999998755433221    111 111111110           


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                                  ........+.....+++++||+|||||||.||||+++|+++.+.+.+....+ .++++|++++++|++
T Consensus      1258 ------------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~ 1324 (4334)
T PRK05691       1258 ------------LDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPIS 1324 (4334)
T ss_pred             ------------ccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCcc
Confidence                        0000011112345679999999999999999999999999999999988888 999999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.++....+.     ..+...++++++|++.++|++++.+......               
T Consensus      1325 fd~s~~~~~~~L~~G~~l~i~~~~~~~~~-----~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~--------------- 1384 (4334)
T PRK05691       1325 FDVSVWECFWPLITGCRLVLAGPGEHRDP-----QRIAELVQQYGVTTLHFVPPLLQLFIDEPLA--------------- 1384 (4334)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCccccCCH-----HHHHHHHHHcCCeEEECcHHHHHHHHhCccc---------------
Confidence            99999999999999999999655433332     2344459999999999999999988652110               


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (576)
                                                        ...++||.+++|||++++++.++|...+ +++++|.||+||+++.+
T Consensus      1385 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 1430 (4334)
T PRK05691       1385 ----------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINV 1430 (4334)
T ss_pred             ----------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeee
Confidence                                              0114899999999999999999998876 78999999999998877


Q ss_pred             cccCC--CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc---cccce
Q 008134          487 TFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF---HCVWM  561 (576)
Q Consensus       487 ~~~~~--~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~---~g~~~  561 (576)
                      +....  ......++|+|++|++++|+| ++++.   +|+|.+|||+|+|+++++||+|+|++|+++|+.++   +|.||
T Consensus      1431 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~ 1506 (4334)
T PRK05691       1431 THWQCQAEDGERSPIGRPLGNVLCRVLD-AELNL---LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARL 1506 (4334)
T ss_pred             eeeecccccCCCCcccceeCCCEEEEEC-CCCCC---CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceE
Confidence            65432  233457899999999999999 55554   67999999999999999999999999999998765   35689


Q ss_pred             eeeCCeecccCccC
Q 008134          562 LCICLYVSCDKTLE  575 (576)
Q Consensus       562 ~~TGDlg~~d~d~e  575 (576)
                      |||||+|++++||.
T Consensus      1507 yrTGDl~~~~~dG~ 1520 (4334)
T PRK05691       1507 YRTGDRARWNADGA 1520 (4334)
T ss_pred             EEccceEEECCCCC
Confidence            99999999999985

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.3e-55  Score=481.51  Aligned_cols=395  Identities=21%  Similarity=0.212  Sum_probs=310.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++++|+++|++.            +++           .+||+||.++++++|++|.++|+++||+|+++
T Consensus         7 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~   63 (563)
T PLN02860          7 AHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIA   63 (563)
T ss_pred             hHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            6899999999999999999975            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhh-hcCCCccEEEEecCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~vv~~~~~~~~~~  240 (576)
                      ++|+++++++++||+++|++++||++.++.+++.++++++++++++++........... ..++.++.++.++...... 
T Consensus        64 ~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-  142 (563)
T PLN02860         64 ALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV-  142 (563)
T ss_pred             cCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc-
Confidence            99999999999999999999999999999999999999999999999876543333322 2334445555544321100 


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                           ..........+++...............++++++|+|||||||.||||+++|++++.........+ .+.++|++
T Consensus       143 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~  216 (563)
T PLN02860        143 -----FIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVY  216 (563)
T ss_pred             -----ccchhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCEE
Confidence                 000001112222221111111111234678999999999999999999999999998877776777 88999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          321 LAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       321 l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      ++.+|++|++++...+.++..|+++++.   ++..+.+           .++++++|+++++|+++..+.........  
T Consensus       217 l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--  283 (563)
T PLN02860        217 LHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQ-----------AIKQHNVTSMITVPAMMADLISLTRKSMT--  283 (563)
T ss_pred             EEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHH-----------HHHHhCCeeEEeChHHHHHHHHhhhhhhc--
Confidence            9999999999998888999999999884   3334444           49999999999999999988764311100  


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (576)
                                                                 ....++||.+++||+++++++.+.|++.+ ++++++.
T Consensus       284 -------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~  320 (563)
T PLN02860        284 -------------------------------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSA  320 (563)
T ss_pred             -------------------------------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecC
Confidence                                                       00114899999999999999999999888 7899999


Q ss_pred             cCcccccCCccccCCCC-----------------------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc
Q 008134          477 YGLTETCAGSTFSEWDD-----------------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG  533 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~  533 (576)
                      ||+||+++..+......                       ....++|+|+|+++++|+|. +        +|+.|||+|+
T Consensus       321 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~-~--------~g~~Gel~v~  391 (563)
T PLN02860        321 YGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLD-E--------SSRVGRILTR  391 (563)
T ss_pred             CCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecC-C--------CCceeEEEEe
Confidence            99999976554332211                       11247999999999999983 2        4678999999


Q ss_pred             cCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          534 GFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       534 G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++++.|||++|+.|++.|  ..+|  ||+|||+|++|+||.
T Consensus       392 g~~~~~GY~~~~~~t~~~~--~~~g--~~~TGDl~~~d~dG~  429 (563)
T PLN02860        392 GPHVMLGYWGQNSETASVL--SNDG--WLDTGDIGWIDKAGN  429 (563)
T ss_pred             cCcccccccCCccccchhc--cCCC--eEEccceEEEcCCCC
Confidence            9999999999999999988  5567  999999999999985

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=7.2e-55  Score=482.97  Aligned_cols=422  Identities=21%  Similarity=0.221  Sum_probs=327.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .|++++|+++++++|+++|+++...         ++.      ....+++||+||.++++++|++|+++|+++||+|+++
T Consensus        25 ~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~   89 (632)
T PRK07529         25 ASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFL   89 (632)
T ss_pred             CCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5899999999999999999987421         110      1233589999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh-----hhHHHHhhhcCCCccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++| +++||+|.++.+++.+++++++++++|++...     .+.+.......+.++.++.++...
T Consensus        90 ~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (632)
T PRK07529         90 LPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLAR  168 (632)
T ss_pred             CCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcc
Confidence            999999999999999999 57999999999999999999999999997543     344555555666777777766432


Q ss_pred             CCCCC--CCC---CCCCCceEeehHHHHHcCCCCCC-CCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh
Q 008134          237 SEKDS--GVS---GGISNWTVSSFSEVEKLGKRSPV-DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (576)
Q Consensus       237 ~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  310 (576)
                      .....  ...   .......+..+.+.......... ......++++++|+|||||||.||||+++|+++++........
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~  248 (632)
T PRK07529        169 YLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALL  248 (632)
T ss_pred             cccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHh
Confidence            11000  000   00012234556665544322211 1233467999999999999999999999999999988877777


Q ss_pred             CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      + .+.++|++++.+|++|..+... ++.+|..|+++++.++..+.+..  ....++..++++++|++.++|+++..+...
T Consensus       249 ~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  325 (632)
T PRK07529        249 L-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGVPTVYAALLQV  325 (632)
T ss_pred             c-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch--HHHHHHHHHHHhCCeEEEeHHHHHHHHHhC
Confidence            7 7899999999999999988765 77889999999997654332210  112345569999999999999999988653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ...                                                ....++||.+++||+++++++.++|++.+
T Consensus       326 ~~~------------------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~  357 (632)
T PRK07529        326 PVD------------------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAAT  357 (632)
T ss_pred             ccc------------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence            110                                                00114899999999999999999999999


Q ss_pred             CCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeec-CCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSW-DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~-~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      |++++|.||+||++++++...... ...+++|+|+|+++++|++. +++.+...+++|+.|||+|+|++++.||++++ .
T Consensus       358 g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~  436 (632)
T PRK07529        358 GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-H  436 (632)
T ss_pred             CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-c
Confidence            999999999999988776554432 25589999999999999643 34433344789999999999999999999865 5


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +.+.|  ..+|  ||+|||+|++|+||.
T Consensus       437 ~~~~~--~~~g--w~~TGDlg~~d~dG~  460 (632)
T PRK07529        437 NKGLW--LEDG--WLNTGDLGRIDADGY  460 (632)
T ss_pred             ccccc--cCCC--ceEcCcEEEEcCCce
Confidence            66666  2455  999999999999874

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4.2e-55  Score=476.41  Aligned_cols=394  Identities=21%  Similarity=0.230  Sum_probs=305.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.+.|.+.++++|+++|+...           ++           +++||+||.++++++|+.|.+   .+||+|+|+
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~   73 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSK---YPDQHIGIM   73 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhh---ccCCeEEEE
Confidence            68999999999999999998752           11           269999999999999999987   389999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhc-CCCccEEEEecCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS-LKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~vv~~~~~~~~~~  240 (576)
                      ++|+++++++++||+++|++++||++.++.+++.+++++++++++|++.+....+.+.... ......+++++.....  
T Consensus        74 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--  151 (539)
T PRK06334         74 MPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE--  151 (539)
T ss_pred             cCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh--
Confidence            9999999999999999999999999999999999999999999999998776665544321 1111234443321100  


Q ss_pred             CCCCCCCCCceEeehHHHHHcC-----CC----CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC
Q 008134          241 SGVSGGISNWTVSSFSEVEKLG-----KR----SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  311 (576)
                                  ..+.+.....     ..    .........++++++|+|||||||.||||+++|++++.........+
T Consensus       152 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~  219 (539)
T PRK06334        152 ------------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF  219 (539)
T ss_pred             ------------ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc
Confidence                        0011110000     00    00112345679999999999999999999999999998888777777


Q ss_pred             CCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       312 ~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                       .++++|++++++|++|.+++.. ++.++..|+++++....  .+     +..+++.|+++++|++.++|++++.+++..
T Consensus       220 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  291 (539)
T PRK06334        220 -SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNP--LY-----PKKIVEMIDEAKVTFLGSTPVFFDYILKTA  291 (539)
T ss_pred             -CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCC--CC-----HHHHHHHHHHhCCcEEEecHHHHHHHHHhh
Confidence             8899999999999999999865 67889999999873211  01     122334499999999999999999987643


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-  469 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-  469 (576)
                      ....                                               ...++||.+++||+++++++.+++++.+ 
T Consensus       292 ~~~~-----------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~  324 (539)
T PRK06334        292 KKQE-----------------------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFP  324 (539)
T ss_pred             hhcc-----------------------------------------------cccccccEEEECCccCCHHHHHHHHHHCC
Confidence            2110                                               0114899999999999999999999887 


Q ss_pred             CCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t  548 (576)
                      ++.+++.||+||++.+++...... ....++|+|++|++++|+|.+++..   +++|+.|||+|+|++++.|||++|+.+
T Consensus       325 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~~  401 (539)
T PRK06334        325 HIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVP---VSSGETGLVLTRGTSLFSGYLGEDFGQ  401 (539)
T ss_pred             CCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCcc---CCCCceEEEEEecCcccccccCCcccc
Confidence            789999999999987766554332 2346899999999999999555543   679999999999999999999999875


Q ss_pred             hhhhcccccccceeeeCCeecccCccC
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ....   .+|.+||+|||+|++|+||.
T Consensus       402 ~~~~---~~~~~w~~TGD~g~~d~~G~  425 (539)
T PRK06334        402 GFVE---LGGETWYVTGDLGYVDRHGE  425 (539)
T ss_pred             ccee---eCCceeEECCCEEEECCCCe
Confidence            4322   23445999999999999874

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.1e-54  Score=480.39  Aligned_cols=395  Identities=21%  Similarity=0.295  Sum_probs=304.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++++|+++|+++.+            .      .+.++++||+||.++++++|++|.++|+++||+|++
T Consensus        38 ~~~l~~~l~~~a~~~p~~~a~~~~~------------~------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai   99 (614)
T PRK08180         38 PRRLTDRLVHWAQEAPDRVFLAERG------------A------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMI   99 (614)
T ss_pred             CccHHHHHHHHHHHCCCCceeeecc------------C------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3689999999999999999998631            0      123468999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCC-----HHHHHHHHhccCceEEEECchh--hhHHHHhhhcCCCccEEEEec
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG-----EDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +++|+++++++++||+++|++++|++|.++     .+++.+++++++++++|++...  ...+....   .....++..+
T Consensus       100 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~~  176 (614)
T PRK08180        100 LSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAVR  176 (614)
T ss_pred             ecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEec
Confidence            999999999999999999999999999998     7999999999999999998642  22222211   1112233332


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCC--CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  311 (576)
                      ....           .....+++++........  .......++++++|+|||||||.||||++||+++++.+......+
T Consensus       177 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~  245 (614)
T PRK08180        177 GAVP-----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF  245 (614)
T ss_pred             CCCC-----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc
Confidence            2110           011245666554321111  111234679999999999999999999999999999888777766


Q ss_pred             CCCC--CCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          312 PNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       312 ~~~~--~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                       .+.  .++++++++|++|.+++.. ++.+++.|+++++.+.......    ...+++.++++++|+++++|+++..|++
T Consensus       246 -~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~----~~~~l~~i~~~~~t~~~~vP~~~~~l~~  320 (614)
T PRK08180        246 -PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGG----FDETLRNLREISPTVYFNVPKGWEMLVP  320 (614)
T ss_pred             -cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchh----HHHHHHHHHHhCCcEEechHHHHHHHHH
Confidence             543  5689999999999998754 6788999999998432100000    0122334899999999999999999877


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      ......                                           ..++..+++||.+++||+++++++.++|++.
T Consensus       321 ~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~  357 (614)
T PRK08180        321 ALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDVWDRLDRV  357 (614)
T ss_pred             HHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHHHHHHHHH
Confidence            532110                                           0111223589999999999999999988864


Q ss_pred             ----hC--CceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccccc
Q 008134          469 ----MG--APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF  542 (576)
Q Consensus       469 ----~~--~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~  542 (576)
                          +|  +++++.||+||++++++.........+++|+|+||++++|+| +          +..|||+|+|++++.|||
T Consensus       358 ~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d-~----------~~~GEi~vrg~~v~~GY~  426 (614)
T PRK08180        358 AEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVP-V----------GGKLEVRVKGPNVTPGYW  426 (614)
T ss_pred             HHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEec-C----------CCCcEEEEecCccchhhc
Confidence                33  689999999999877665544445568999999999999998 2          346999999999999999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecc
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSC  570 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~  570 (576)
                      ++|+.|++.|  +.+|  ||+|||+|++
T Consensus       427 ~~p~~t~~~~--~~dg--w~~TGDlg~~  450 (614)
T PRK08180        427 RAPELTAEAF--DEEG--YYRSGDAVRF  450 (614)
T ss_pred             CChhHhHhhc--ccCC--ceeccceEEe
Confidence            9999999999  5678  9999999999

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=2.7e-55  Score=459.04  Aligned_cols=388  Identities=19%  Similarity=0.227  Sum_probs=309.0

Q ss_pred             HHHHHHHh-CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCC
Q 008134           87 LFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAET  164 (576)
Q Consensus        87 ~~~~~a~~-~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~  164 (576)
                      .++++.+. .+|+.|+++..            .      .+..+.+||+||.+.++++|+.|++ .|+ +||||+|++|+
T Consensus        14 ~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~   74 (528)
T COG0365          14 ALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPN   74 (528)
T ss_pred             hhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCC
Confidence            56677664 47899999853            1      1122689999999999999999997 568 99999999999


Q ss_pred             cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhh--hcCC-CccEEEEecCCCCCCCC
Q 008134          165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLK-TIKNVIYFENDGSEKDS  241 (576)
Q Consensus       165 s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~~~-~~~~vv~~~~~~~~~~~  241 (576)
                      .+|.++++|||+|+|++++|+.+.++++.+.+.+++++++++|+.+..........  .... .+..+++++..      
T Consensus        75 ~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------  148 (528)
T COG0365          75 SPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------  148 (528)
T ss_pred             CHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------
Confidence            99999999999999999999999999999999999999999999887654332211  0000 00003322221      


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh-hCCCCCCCcEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LIPNPGRSDVY  320 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~~d~~  320 (576)
                             .   +.|.++....... ..+.+..++|+++|+|||||||+||||+++|++++........ .+ .+.++|++
T Consensus       149 -------~---~~~~~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-~~~~~Dv~  216 (528)
T COG0365         149 -------G---LWYDEAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-DLLPGDRF  216 (528)
T ss_pred             -------c---ccHHHHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-CCCCCCEE
Confidence                   1   5667766543322 2234578999999999999999999999999987777665554 45 77899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      .+.++..|..|.+. ++.+|.+|+++++.+.....+     +..+++.|+++++|++++.|+.+++|.+...        
T Consensus       217 w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~-----~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------  283 (528)
T COG0365         217 WNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYS-----PERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------  283 (528)
T ss_pred             EeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCC-----HHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------
Confidence            99999999999998 889999999999843332221     2335555999999999999999999987432        


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                             +++.++++||.+.++||||+++.++++.+.+|++|.+.||+
T Consensus       284 ---------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gq  324 (528)
T COG0365         284 ---------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQ  324 (528)
T ss_pred             ---------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccc
Confidence                                                   11223369999999999999999999999999999999999


Q ss_pred             ccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC--cccccccCCcccchhhhccccc
Q 008134          480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       480 TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~--~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      ||+++......+ ..++++.|+|+||.++.|+| |+|+.   +++++ |+|+|+.+  ++++|||+|||.+.++|   -+
T Consensus       325 TEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~---~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y---~~  395 (528)
T COG0365         325 TETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNP---VPPGV-GELVVRLPWPGMALTYWNDPERYKEAY---FG  395 (528)
T ss_pred             cccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCc---CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHH---hh
Confidence            999965555544 44556669999999999999 55665   56888 99999987  99999999999999988   22


Q ss_pred             ccceeeeCCeecccCcc
Q 008134          558 CVWMLCICLYVSCDKTL  574 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~  574 (576)
                      .  ||.|||.+++|+||
T Consensus       396 ~--~y~tGD~~~~DedG  410 (528)
T COG0365         396 R--WYRTGDWAERDEDG  410 (528)
T ss_pred             c--eeecCceeEEccCC
Confidence            3  99999999999998

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-54  Score=474.28  Aligned_cols=390  Identities=18%  Similarity=0.223  Sum_probs=316.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++++||++|+++            ++           +.+||+||.++++++|++|++.|+++||+|+++
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~  105 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALID------------ER-----------GTLTYAELDEQSNALARGLLALGVRAGDGVAVL  105 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEE------------CC-----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4899999999999999999985            22           269999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.+..++.......    
T Consensus       106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  181 (549)
T PRK07788        106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE----  181 (549)
T ss_pred             cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc----
Confidence            9999999999999999999999999999999999999999999999998877766554433443443333222111    


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                           .......+++++.......   +.+..+++.++|+|||||||.||||+++|+++++.+......+ .+..+|+++
T Consensus       182 -----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~  252 (549)
T PRK07788        182 -----PSGSTDETLDDLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTL  252 (549)
T ss_pred             -----cCCcCcccHHHHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEE
Confidence                 0112345677776533221   2233457889999999999999999999999999888887777 889999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      ..+|++|.+++..++.++..|+++++.   ++..+.+.           +++++||++.++|+++..+++.......   
T Consensus       253 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~---  318 (549)
T PRK07788        253 LPAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVLA---  318 (549)
T ss_pred             EccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCcccccC---
Confidence            999999999998888899999999883   44444444           9999999999999999988764221000   


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                ....++||.+++||+++++++.++|.+.++.+++|.||
T Consensus       319 ------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG  356 (549)
T PRK07788        319 ------------------------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYG  356 (549)
T ss_pred             ------------------------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccC
Confidence                                                      00114899999999999999999999999999999999


Q ss_pred             cccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      +||++..+...... ...++++|+|++|++++|+| ++++.   ++.|+.|||+|+|+.++.||+++++.  + +   .+
T Consensus       357 ~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~---~~  426 (549)
T PRK07788        357 STEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNE---VPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I---ID  426 (549)
T ss_pred             cchhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCC---CCCCCeEEEEEeCCCccccccCCCcc--c-c---cC
Confidence            99997655433221 12457899999999999999 66654   55799999999999999999998875  2 2   36


Q ss_pred             ccceeeeCCeecccCccC
Q 008134          558 CVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~e  575 (576)
                      |  ||+|||+|++|+||.
T Consensus       427 g--~~~TGDl~~~~~~g~  442 (549)
T PRK07788        427 G--LLSSGDVGYFDEDGL  442 (549)
T ss_pred             C--ceecCceEEEcCCCC
Confidence            7  999999999999874

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.2e-54  Score=479.69  Aligned_cols=413  Identities=17%  Similarity=0.178  Sum_probs=320.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      +..+++|+++++++|+++|+++..          +.       .++.+.+||+||.++++++|++|+++|+++||+|+++
T Consensus        57 n~~~~~l~~~~~~~p~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~  119 (625)
T TIGR02188        57 NVSYNCVDRHLEARPDKVAIIWEG----------DE-------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIY  119 (625)
T ss_pred             EHHHHHHHHhhccCCCCeEEEEEc----------CC-------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            467888989999999999998742          10       1334689999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcCC-CccEEEE
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLK-TIKNVIY  231 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~~~~vv~  231 (576)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+.....+ .++.++.
T Consensus       120 ~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (625)
T TIGR02188       120 MPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV  199 (625)
T ss_pred             CCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE
Confidence            999999999999999999999999999999999999999999999998753         233444444444 4666666


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH-HHhh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~  310 (576)
                      ++...... .    .. ......++++..... ....+....++++++|+|||||||.||||+++|++++..... ....
T Consensus       200 ~~~~~~~~-~----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~  272 (625)
T TIGR02188       200 VRRTGNPV-P----WV-EGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYV  272 (625)
T ss_pred             EcCCCCCc-C----cc-ccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhc
Confidence            65432110 0    00 011234566554322 122234567889999999999999999999999998765443 3444


Q ss_pred             CCCCCCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      + ++.++|++++..|++|..+.. .++.+|..|+++++.+... ..+     +..+++.++++++|+++++|++++.|.+
T Consensus       273 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~  346 (625)
T TIGR02188       273 F-DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPD-----PGRFWEIIEKHKVTIFYTAPTAIRALMR  346 (625)
T ss_pred             c-CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCC-----hhHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence            5 888999999999999998764 4788999999999843221 111     2334555999999999999999998876


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      ......                                             ++...++||.+++||+++++++.+++.+.
T Consensus       347 ~~~~~~---------------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~  381 (625)
T TIGR02188       347 LGDEWV---------------------------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKV  381 (625)
T ss_pred             cCCccc---------------------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHH
Confidence            321100                                             01112589999999999999999999888


Q ss_pred             hC---CceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCC-CCCCceEEEcc--Cccccc
Q 008134          469 MG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK-PMPRGEIVVGG--FNVTAG  540 (576)
Q Consensus       469 ~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~-~g~~GEl~v~G--~~v~~G  540 (576)
                      ++   +++++.||+||+++.++...+.  ...++++|+|++|++++|+| ++++.   ++ +|+.|||+|+|  |++++|
T Consensus       382 ~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~---~~~~g~~GeL~v~~p~p~~~~g  457 (625)
T TIGR02188       382 VGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNP---VEGPGEGGYLVIKQPWPGMLRT  457 (625)
T ss_pred             cCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCC---CCCCCCeEEEEEccCCCccccc
Confidence            75   7899999999998776544332  23558899999999999999 66654   45 78999999999  689999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ||++|+.+.+.|....+|  ||+|||+|++|+||.
T Consensus       458 y~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~dG~  490 (625)
T TIGR02188       458 IYGDHERFVDTYFSPFPG--YYFTGDGARRDKDGY  490 (625)
T ss_pred             ccCChHHHHHHHhccCCC--EEECCceEEEcCCCc
Confidence            999999998887444577  999999999999974

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-54  Score=478.69  Aligned_cols=426  Identities=15%  Similarity=0.109  Sum_probs=312.0

Q ss_pred             CCCHHHHHHHHHHh--CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           81 ASTMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        81 ~~tl~~~~~~~a~~--~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      .++..++++++++.  +|+++|+++..          ++.       +..+++||+||.++++++|++|+++|+++||+|
T Consensus        58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~----------~~~-------~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV  120 (647)
T PTZ00237         58 LNTCYNVLDIHVKNPLKRDQDALIYEC----------PYL-------KKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNV  120 (647)
T ss_pred             eeHHHHHHHHhhcccCCCCceEEEEEc----------CCC-------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            35678899988865  79999998742          111       123579999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch---------hhhHHHHhhhcCC-CccE
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK---------QLKKLSAVSSSLK-TIKN  228 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~~~~  228 (576)
                      +++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.+...... ....
T Consensus       121 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (647)
T PTZ00237        121 LIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSN  200 (647)
T ss_pred             EEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCE
Confidence            99999999999999999999999999999999999999999999999999752         2233333322111 1235


Q ss_pred             EEEecCCCC---CCCCCCCCCCCCceEeehHHHHHcCC----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHH-H
Q 008134          229 VIYFENDGS---EKDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGN-I  300 (576)
Q Consensus       229 vv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~-l  300 (576)
                      ++.+.....   .....+...........|++++....    ..........++++++|+|||||||.||||+++|++ +
T Consensus       201 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l  280 (647)
T PTZ00237        201 VITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL  280 (647)
T ss_pred             EEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHH
Confidence            554422110   00000000000012245666654211    111122455789999999999999999999999998 4


Q ss_pred             HHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecH
Q 008134          301 VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP  380 (576)
Q Consensus       301 ~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P  380 (576)
                      ++........+ ....+|++++..|++|+.+...++.+|+.|+++++.+...+...  .....+++.++++++|+++++|
T Consensus       281 ~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~--~~~~~~~~~i~~~~vt~~~~~P  357 (647)
T PTZ00237        281 VGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNK--HIEDDLWNTIEKHKVTHTLTLP  357 (647)
T ss_pred             HHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCC--CchHHHHHHHHHhCeEEEEeCH
Confidence            44333334444 67788999999999998766667889999999998443211100  0012345559999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH
Q 008134          381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD  460 (576)
Q Consensus       381 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~  460 (576)
                      ++++.|.+........                                          ..+...++||.+++||++++++
T Consensus       358 ~~~~~l~~~~~~~~~~------------------------------------------~~~~~l~~Lr~i~~~G~~l~~~  395 (647)
T PTZ00237        358 KTIRYLIKTDPEATII------------------------------------------RSKYDLSNLKEIWCGGEVIEES  395 (647)
T ss_pred             HHHHHHHhhCcccccc------------------------------------------ccccCcchheEEEecCccCCHH
Confidence            9999887632110000                                          0001124899999999999999


Q ss_pred             HHHHHHhhhCCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC---c
Q 008134          461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---N  536 (576)
Q Consensus       461 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~---~  536 (576)
                      +.+++++.+|+++++.||+||+++..+...... ...+++|+|+||++++|+| ++|+.   +++|+.|||+|+||   +
T Consensus       396 ~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~---~~~ge~GEl~v~~p~~p~  471 (647)
T PTZ00237        396 IPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKE---LNVNEIGEVAFKLPMPPS  471 (647)
T ss_pred             HHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCC---CCCCCceEEEEeccCCch
Confidence            999999999999999999999986554333222 2337999999999999999 66665   56899999999986   7


Q ss_pred             ccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          537 VTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       537 v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++.|||+||+.|++.| ...+|  ||+|||+|++|+||-
T Consensus       472 ~~~gy~~~~~~~~~~f-~~~~g--~~~TGDlg~~d~dG~  507 (647)
T PTZ00237        472 FATTFYKNDEKFKQLF-SKFPG--YYNSGDLGFKDENGY  507 (647)
T ss_pred             hhCceeCCHHHHHHHH-hCCCC--EEECCcEEEECCCCe
Confidence            8999999999999888 22367  999999999999873

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=4.6e-55  Score=461.78  Aligned_cols=392  Identities=30%  Similarity=0.438  Sum_probs=303.9

Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++|+++||++|+++ +          ++           +++||+||.++++++|..|+++|+++|++|+++++|+++
T Consensus         1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~   58 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE   58 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred             ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence            7899999999999986 1          22           489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE----CchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGV  243 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~  243 (576)
                      ++++++||+++|++++|++|.++.+++.++++.++++++|+    +......+............++.++......    
T Consensus        59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  134 (417)
T PF00501_consen   59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPK----  134 (417)
T ss_dssp             HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTT----
T ss_pred             eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccc----
Confidence            99999999999999999999999999999999999999997    2222333334333333445566655432211    


Q ss_pred             CCCCCCceEeehHHHHHcCCCCCCCCCC-CCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH--hhCCCCCCCcEE
Q 008134          244 SGGISNWTVSSFSEVEKLGKRSPVDPSL-PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK--TLIPNPGRSDVY  320 (576)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~~d~~  320 (576)
                                 .+.+......... ..+ ..++++++|+|||||||.||+|+++|+++++.+..+.  ..+ +++  |++
T Consensus       135 -----------~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~  199 (417)
T PF00501_consen  135 -----------KEALKSASLSDEP-QSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRI  199 (417)
T ss_dssp             -----------CHHHHHHHHCHCS-HSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEE
T ss_pred             -----------ccccccccccccc-ccCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceE
Confidence                       0011100000000 000 0578999999999999999999999999999988864  223 344  699


Q ss_pred             EEecChHHHHHH-HHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          321 LAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       321 l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ++++|++|.+++ ..++.++..|+++++.+.....+.     ..++..+++++||+++++|+++..++++.+.+ ..   
T Consensus       200 l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~---  270 (417)
T PF00501_consen  200 LSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDP-----ESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK---  270 (417)
T ss_dssp             EESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHH-----HHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---
T ss_pred             Eeecccccccccccccccccccccccccccccccccc-----ccchhccccccccccccccccccccccccccc-cc---
Confidence            999999999999 678999999999999665544211     12334499999999999999999997632111 00   


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC-ceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~-~l~~~YG  478 (576)
                                                             .+....++||.+++||+++++++.+++++.++. ++++.||
T Consensus       271 ---------------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG  311 (417)
T PF00501_consen  271 ---------------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYG  311 (417)
T ss_dssp             ---------------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEE
T ss_pred             ---------------------------------------ccccccccccccccccccCChhhccccccccccccceeccc
Confidence                                                   000012479999999999999999999999877 9999999


Q ss_pred             cccccCCccccCC--CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          479 LTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       479 ~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      +||++.+++....  .....+++|+|+|+++++|+|+++++.   +++|+.|||+|+|++++.||+++|+.|+++|  +.
T Consensus       312 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~---~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~--~~  386 (417)
T PF00501_consen  312 STETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEP---LPPGEPGEIVIRGPNVFSGYYNDPELTAEAF--ID  386 (417)
T ss_dssp             EGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSB---ESTTSEEEEEEESTTSBSEETTBHHHHHHHE--ET
T ss_pred             ccccceeeeccccccccccccccccccccccccccccccccc---ccccccccccccCCccceeeecccccccccc--cc
Confidence            9999998875532  223567899999999999999665766   4689999999999999999999999999999  33


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||.
T Consensus       387 ~~--~~~TGD~g~~d~~G~  403 (417)
T PF00501_consen  387 DG--WYRTGDLGRLDEDGY  403 (417)
T ss_dssp             TS--EEEEEEEEEEETTSE
T ss_pred             cc--ceecceEEEECCCCe
Confidence            56  999999999999874

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.7e-54  Score=474.15  Aligned_cols=399  Identities=22%  Similarity=0.312  Sum_probs=302.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...++.++|+++++++||++|+++.+           ..      .+.++.+||+||.++++++|++|+++|+++||+|
T Consensus        46 ~~~~~l~~~l~~~a~~~pd~~a~~~~~-----------~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V  108 (624)
T PRK12582         46 PYPRSIPHLLAKWAAEAPDRPWLAQRE-----------PG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV  108 (624)
T ss_pred             CcccCHHHHHHHHHHHCCCchheeccc-----------CC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            445799999999999999999998631           10      1234689999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCH-----HHHHHHHhccCceEEEECchh-hhHHHHhhhcCCCccEEEEe
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGE-----DALIHSLNETQVTTLICDSKQ-LKKLSAVSSSLKTIKNVIYF  232 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~l~~~~~~~~~~~~vv~~  232 (576)
                      +++++|+++++++++||+++|++++|++|.++.     +++.+++++++++++|++... .......... ... .++.+
T Consensus       109 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~-~~i~~  186 (624)
T PRK12582        109 MILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV-TVVHV  186 (624)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc-eEEEE
Confidence            999999999999999999999999999999885     899999999999999998642 1111111111 112 23333


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCC--CCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV--DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  310 (576)
                      +....           .....+++++.........  ......++++++|+|||||||.||||+++|+++++.+......
T Consensus       187 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~  255 (624)
T PRK12582        187 TGPGE-----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQL  255 (624)
T ss_pred             cCCCc-----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHh
Confidence            32211           1123456665543221111  1123467899999999999999999999999999887766554


Q ss_pred             CCCCCC---CcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHH
Q 008134          311 IPNPGR---SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV  386 (576)
Q Consensus       311 ~~~~~~---~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l  386 (576)
                      + ....   .+++++++|++|.+++.. ++.++..|+++++.+.......    ...+...++++++|+++++|+++..|
T Consensus       256 ~-~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~----~~~~~~~i~~~~~t~~~~vP~~~~~l  330 (624)
T PRK12582        256 R-PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGM----FEETIRNLREISPTVYGNVPAGYAML  330 (624)
T ss_pred             c-cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccch----HHHHHHHHHhcCCeEEeccCHHHHHH
Confidence            4 4433   589999999999999765 5678999999988432111000    01123338889999999999999988


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH
Q 008134          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (576)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~  466 (576)
                      .+......                                           ..++...++||.+++||+++++++.++|.
T Consensus       331 ~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~  367 (624)
T PRK12582        331 AEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQ  367 (624)
T ss_pred             HHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHH
Confidence            76432110                                           00111224899999999999999999998


Q ss_pred             hhh------CCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccc
Q 008134          467 ICM------GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (576)
Q Consensus       467 ~~~------~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~G  540 (576)
                      +.+      ++++++.||+||++.+++.......+.+++|+|+||++++|++           .|+.|||+|+|++++.|
T Consensus       368 ~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v~~G  436 (624)
T PRK12582        368 ALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNVTPG  436 (624)
T ss_pred             HHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCccccc
Confidence            763      3679999999999876653333344568999999999999964           56789999999999999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecc
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSC  570 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~  570 (576)
                      ||++|+.|++.|  +.+|  ||+|||+|++
T Consensus       437 Y~~~p~~t~~~f--~~dg--w~~TGDlg~~  462 (624)
T PRK12582        437 YHKDPELTAAAF--DEEG--FYRLGDAARF  462 (624)
T ss_pred             ccCCccchhhhc--CccC--CccccceEEe
Confidence            999999999999  5677  9999999998

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-53  Score=474.87  Aligned_cols=412  Identities=18%  Similarity=0.199  Sum_probs=318.1

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ...++|+++++++|+++|+++...         +        .+..+.+||+||.++++++|++|+++|+++||+|++++
T Consensus        68 ~~~~~l~~~~~~~p~~~Al~~~~~---------~--------~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~  130 (637)
T PRK00174         68 VSYNCLDRHLKTRGDKVAIIWEGD---------D--------PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYM  130 (637)
T ss_pred             HHHHHHHHhhccCCCCeEEEEECC---------C--------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            356788899999999999987320         0        12335799999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhhhcCCCccEEEEec
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...         +.+.+....++.++.++.++
T Consensus       131 ~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (637)
T PRK00174        131 PMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVR  210 (637)
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEc
Confidence            999999999999999999999999999999999999999999999987532         23333334455666677665


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH-HHhhCC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIP  312 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~  312 (576)
                      ...... .    .. ......++++.... ..........++++++|+|||||||.||||+++|++++..... ....+ 
T Consensus       211 ~~~~~~-~----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-  282 (637)
T PRK00174        211 RTGGDV-D----WV-EGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-  282 (637)
T ss_pred             CCCCCc-C----cC-CCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-
Confidence            432110 0    00 01123456665432 2222234456789999999999999999999999998765443 33445 


Q ss_pred             CCCCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECCcc-cccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~-~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                      .+.++|++++.+|++|..+.. .++.+|..|+++++.+.. ...+     ...+++.|+++++|++.++|++++.+.+..
T Consensus       283 ~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  357 (637)
T PRK00174        283 DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPD-----PGRFWEVIDKHKVTIFYTAPTAIRALMKEG  357 (637)
T ss_pred             CCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCC-----hHHHHHHHHhcCCeEEeecHHHHHHHHhcC
Confidence            888899999999999998865 478899999999984321 1111     123445599999999999999999886532


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                      ....                                             +....++||.+++||+++++++.+++.+.++
T Consensus       358 ~~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~  392 (637)
T PRK00174        358 DEHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVG  392 (637)
T ss_pred             Cccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhC
Confidence            1100                                             0011248999999999999999999988875


Q ss_pred             ---CceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--CcccccccC
Q 008134          471 ---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFN  543 (576)
Q Consensus       471 ---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~GY~~  543 (576)
                         +++++.||+||+++.++...+.  ....+++|+|++|++++|+| ++++.   ++.|+.|||+|+|  |++++|||+
T Consensus       393 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~p~~~~gy~~  468 (637)
T PRK00174        393 GERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNP---LEGGEGGNLVIKDPWPGMMRTIYG  468 (637)
T ss_pred             CCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCC---CCCCCcEEEEEcCCCCcccccccC
Confidence               7899999999998766544332  23457899999999999999 66654   5689999999999  699999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++.+.+.|....+|  ||+|||+|++|+||.
T Consensus       469 ~~~~~~~~~~~~~~g--~~~TGDl~~~d~dG~  498 (637)
T PRK00174        469 DHERFVKTYFSTFKG--MYFTGDGARRDEDGY  498 (637)
T ss_pred             CHHHHHHhhhcCCCC--EEECCceEEEcCCCc
Confidence            999988887444567  999999999999874

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.3e-53  Score=474.70  Aligned_cols=417  Identities=17%  Similarity=0.142  Sum_probs=311.9

Q ss_pred             CCHHHHHHHHHH-hCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           82 STMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~-~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      +....+|+++++ .+|+++|+++..          +.       .+..+++||+||.++++++|++|+++|+++||+|++
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~~----------~~-------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i  150 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWEG----------NE-------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVI  150 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEEc----------CC-------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            455788888886 489999998731          10       123358999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhh---------HHHHhhhcC----CCcc
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK---------KLSAVSSSL----KTIK  227 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~~~  227 (576)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.....         .+.......    ....
T Consensus       151 ~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  230 (666)
T PLN02654        151 YLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVG  230 (666)
T ss_pred             EcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCcc
Confidence            999999999999999999999999999999999999999999999999876431         122221111    1112


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHH-HHH
Q 008134          228 NVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAA  306 (576)
Q Consensus       228 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~  306 (576)
                      .++..+......... ..+. ......++++.... ....+.....++++++|+|||||||.||||+++|++++.. ...
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~  307 (666)
T PLN02654        231 ICLTYENQLAMKRED-TKWQ-EGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATT  307 (666)
T ss_pred             EEEEecccccccccc-cccc-cCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHH
Confidence            222222211000000 0000 00122355554321 1111223457899999999999999999999999998654 344


Q ss_pred             HHhhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHH
Q 008134          307 IKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD  384 (576)
Q Consensus       307 ~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~  384 (576)
                      ....+ +++++|++++.+|++|..+... ++.+|+.|+++++.+... ..+     +..+++.|+++++|+++++|++++
T Consensus       308 ~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~  381 (666)
T PLN02654        308 FKYAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPD-----SGRCWDIVDKYKVTIFYTAPTLVR  381 (666)
T ss_pred             HHHhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCC-----HHHHHHHHHHhCCeEEEeCHHHHH
Confidence            55566 8999999999999999998755 678899999999854321 112     233555599999999999999999


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHH
Q 008134          385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF  464 (576)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~  464 (576)
                      .|.+......                                             .+...++||.++++|+++++++.++
T Consensus       382 ~l~~~~~~~~---------------------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~  416 (666)
T PLN02654        382 SLMRDGDEYV---------------------------------------------TRHSRKSLRVLGSVGEPINPSAWRW  416 (666)
T ss_pred             HHHhhCcccc---------------------------------------------ccCChhheeEEEEecCCCCHHHHHH
Confidence            9876321100                                             0011148999999999999999999


Q ss_pred             HHhhhC---CceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--Ccc
Q 008134          465 INICMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNV  537 (576)
Q Consensus       465 ~~~~~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v  537 (576)
                      +.+.+|   +++.+.||+||+++..+...+.  ...++++|+|++|++++|+| ++|+.   ++.++.|||+|++  |++
T Consensus       417 ~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~---~~~~~~Gel~v~~~~p~~  492 (666)
T PLN02654        417 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE---IEGECSGYLCVKKSWPGA  492 (666)
T ss_pred             HHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC---CCCCCceEEEEcCCCchh
Confidence            998887   7899999999998766544332  23558999999999999999 66664   4577899999999  789


Q ss_pred             cccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          538 TAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       538 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|||+|++.+.+.|....+|  ||+|||+|++|+||-
T Consensus       493 ~~gy~~~~~~~~~~~~~~~~g--~~~TGD~~~~d~dG~  528 (666)
T PLN02654        493 FRTLYGDHERYETTYFKPFAG--YYFSGDGCSRDKDGY  528 (666)
T ss_pred             hhhhcCChHHHHHhhhhcCCC--EEEeCceEEECCCCc
Confidence            999999999998887433467  999999999999874

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.6e-53  Score=472.37  Aligned_cols=417  Identities=16%  Similarity=0.145  Sum_probs=314.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      +.++++|+++++.+|+++|+++..           ..      .+..+++||+||.++++++|++|+++|+++||+|+++
T Consensus        52 n~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~  114 (628)
T TIGR02316        52 NLCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY  114 (628)
T ss_pred             eHHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            556789999999999999998741           00      1233579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcC-CCccEEEE
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY  231 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~~~~vv~  231 (576)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.+..... .....++.
T Consensus       115 ~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  194 (628)
T TIGR02316       115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLL  194 (628)
T ss_pred             cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999997642         12233322222 23456666


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHH-HHHHHhh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT-AAAIKTL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~  310 (576)
                      ++...... ...     ......+.++.........+.....++++++|+|||||||.||||+++|++++.. .......
T Consensus       195 ~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  268 (628)
T TIGR02316       195 VDRGLAPM-RLI-----PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAI  268 (628)
T ss_pred             EeCCCCCc-Ccc-----cCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence            65421110 000     0012346665543221122223356799999999999999999999999998644 4444555


Q ss_pred             CCCCCCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      + +++++|++++.+|++|+.+.. .++.+|+.|+++++.+.......    ...+++.++++++|+++++|++++.|.+.
T Consensus       269 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  343 (628)
T TIGR02316       269 F-GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPD----PGVWWSIVERYGVRTMFSAPTAIRVLKKQ  343 (628)
T ss_pred             c-CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCC----HHHHHHHHHHhCCeEEEeCHHHHHHHHhc
Confidence            6 889999999999999998864 47889999999998543211111    23345559999999999999999987653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ....                                             +++...++||.+++||+++++++.++++..+
T Consensus       344 ~~~~---------------------------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~  378 (628)
T TIGR02316       344 DAAW---------------------------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGL  378 (628)
T ss_pred             CCcc---------------------------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHh
Confidence            2110                                             0011125899999999999999999999988


Q ss_pred             CCceecccCcccccCCccccCCC----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC---ccccccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF  542 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~---~v~~GY~  542 (576)
                      +..+++.||+||++..++.....    ....+++|+|+||++++|+|.++++.   ++.|+.|||+|+||   +++.|||
T Consensus       379 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~---~~~g~~Gel~v~gp~~~g~~~~~~  455 (628)
T TIGR02316       379 GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP---CGPNEKGVLTVVPPLPPGCLSTVW  455 (628)
T ss_pred             CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCC---CCCCCcEEEEEecCCCcccccccc
Confidence            99999999999998544332221    23447899999999999999546655   56899999999998   5789999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++++.+.+.|.... +.+||+|||+|++|+||.
T Consensus       456 ~~~~~~~~~~~~~~-~~~~~~TGD~g~~d~dG~  487 (628)
T TIGR02316       456 GDDARFLKTYWSHF-KRPLYSSFDWGIRDEDGY  487 (628)
T ss_pred             CChHHHHHhhhhcC-CCCEEECCceEEEcCCCc
Confidence            99988877663211 234999999999999974

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.2e-53  Score=462.32  Aligned_cols=393  Identities=20%  Similarity=0.248  Sum_probs=316.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|++.++.+|+++|+++..          ++       .+.++.+||+||.++++++|++|++.|+++||+|+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~   86 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQ   86 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            689999999999999999998732          11       1334589999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh-----hhHHHHhhhcCCCccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++...     .+.+.++....+.++.++.++...
T Consensus        87 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (547)
T PRK13295         87 LPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG  166 (547)
T ss_pred             CCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC
Confidence            999999999999999999999999999999999999999999999998754     233333334455566666654421


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCC-----C--CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGK-----R--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~  309 (576)
                      .               .++.++.....     .  .........++++++|+|||||||.||||+++|++++..+.....
T Consensus       167 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~  231 (547)
T PRK13295        167 A---------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE  231 (547)
T ss_pred             c---------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHH
Confidence            1               12333322110     0  011123346789999999999999999999999999998888877


Q ss_pred             hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~  385 (576)
                      .+ .+.++|++++.+|++|..++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|+++..
T Consensus       232 ~~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~  299 (547)
T PRK13295        232 RL-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL-----------IRTEGVTFTMASTPFLTD  299 (547)
T ss_pred             Hh-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence            77 8899999999999999988655 78889999999984   33344444           999999999999999988


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Q 008134          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (576)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~  465 (576)
                      +........                                               ...++||.+++||+++++++.+++
T Consensus       300 l~~~~~~~~-----------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~  332 (547)
T PRK13295        300 LTRAVKESG-----------------------------------------------RPVSSLRTFLCAGAPIPGALVERA  332 (547)
T ss_pred             HHhcccccC-----------------------------------------------CCcccceEEEEecCCCCHHHHHHH
Confidence            865321100                                               011489999999999999999999


Q ss_pred             HhhhCCceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          466 NICMGAPIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                      ++.++++++|.||+||++.+++.....  .....++|+|+++++++|+| ++++.   ++.|+.|||+|+|++++.||++
T Consensus       333 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~  408 (547)
T PRK13295        333 RAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAP---LPAGQIGRLQVRGCSNFGGYLK  408 (547)
T ss_pred             HHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCC---CCCCCCCeEEEEcCcccccccC
Confidence            998899999999999998765544322  12236899999999999999 55554   5689999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+.|++.    .+|  ||+|||+|++|+||.
T Consensus       409 ~~~~t~~~----~~g--~~~TGD~~~~~~~g~  434 (547)
T PRK13295        409 RPQLNGTD----ADG--WFDTGDLARIDADGY  434 (547)
T ss_pred             CccccccC----CCC--CeecceEEEEcCCce
Confidence            99998765    367  999999999998874

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-53  Score=464.78  Aligned_cols=411  Identities=20%  Similarity=0.222  Sum_probs=307.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|++.++++|+++|+++.+           +.  ...+...++++||+||.++++++|++|++.|+++||+|+++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~-----------~~--~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~   72 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPG-----------GR--GADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM   72 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEecc-----------CC--CCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            578899999999999999998732           10  00001223479999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch--hhhHHHHhhhcCCCccEEEEecCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK--QLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~l~~~~~~~~~~~~vv~~~~~~~~~  239 (576)
                      ++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.  ..+.+...  .......++.++...   
T Consensus        73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~---  147 (552)
T PRK09274         73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL---  147 (552)
T ss_pred             eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc---
Confidence            99999999999999999999999999999999999999999999999752  22221111  011223333332210   


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~  319 (576)
                               ......++++...............++++++|+|||||||.||||+++|+++++.+......+ ++.++|+
T Consensus       148 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~  217 (552)
T PRK09274        148 ---------LWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEI  217 (552)
T ss_pred             ---------ccCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCce
Confidence                     001123444432221222223345678999999999999999999999999999988888888 8999999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      .++.+|++|.++       +..|+++++.+..... .....+..+++.|+++++|+++++|+++..+.+.....      
T Consensus       218 ~~~~~pl~~~~~-------~~~g~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------  283 (552)
T PRK09274        218 DLPTFPLFALFG-------PALGMTSVIPDMDPTR-PATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN------  283 (552)
T ss_pred             eeeccCHHHhhh-------hhhCCeEEecCccccc-ccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc------
Confidence            999999987644       3458887773311000 00011233555599999999999999999987643211      


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh--CCceeccc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--GAPIGQAY  477 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~--~~~l~~~Y  477 (576)
                                                               ....++||.+++||+++++++.+++++.+  |+++++.|
T Consensus       284 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~Y  322 (552)
T PRK09274        284 -----------------------------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPY  322 (552)
T ss_pred             -----------------------------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccc
Confidence                                                     00124899999999999999999999988  57999999


Q ss_pred             CcccccCCccccCCC----------CCCCCccCCCCCCcEEEEeecCCCC-----CcCCCCCCCCceEEEccCccccccc
Q 008134          478 GLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGG-----YKTSDKPMPRGEIVVGGFNVTAGYF  542 (576)
Q Consensus       478 G~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~~~~ivd~~~~~-----~~~~~~~g~~GEl~v~G~~v~~GY~  542 (576)
                      |+||++++++.....          .....++|+|+|+++++|+|++++.     ....++.|+.|||+|+|++++.|||
T Consensus       323 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~  402 (552)
T PRK09274        323 GATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYY  402 (552)
T ss_pred             cccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCccccccc
Confidence            999998765533211          1122479999999999999953221     1123678999999999999999999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|+.|+..|+.+++|.+||+|||+|++|+||.
T Consensus       403 ~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~  435 (552)
T PRK09274        403 NRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGR  435 (552)
T ss_pred             CChHHhhhhhcccCCCCcEEEcCCEEEEccCCc
Confidence            999999998866666667999999999999874

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-52  Score=456.07  Aligned_cols=385  Identities=17%  Similarity=0.168  Sum_probs=310.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++++||++|++.            +++           .+||+||.++++++|++|.++|+++|++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~   99 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM   99 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5899999999999999999985            222           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.......+....++.++...     
T Consensus       100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (537)
T PRK13382        100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED-----  174 (537)
T ss_pred             ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-----
Confidence            999999999999999999999999999999999999999999999999887766655443333333333332211     


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                               ....++++...... .  .....+++.++++|||||||.||||+++|++++.........+ .+..+++++
T Consensus       175 ---------~~~~~~~~~~~~~~-~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l  241 (537)
T PRK13382        175 ---------HDLTVEVLIAAHAG-Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTV  241 (537)
T ss_pred             ---------ccccHHHHhhccCc-C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEE
Confidence                     01234444332211 1  1123468899999999999999999999999988888777777 788899999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      ...|++|.+++..++.++..|+++++   +++..+.+.           |+++++|++.++|+++..+.........   
T Consensus       242 ~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~---  307 (537)
T PRK13382        242 IVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVRN---  307 (537)
T ss_pred             EecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhcc---
Confidence            99999999999888899999999988   444444444           9999999999999999988653211000   


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                ...++++|.+++||+++++++.+.|.+.++.+++|.||
T Consensus       308 ------------------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG  345 (537)
T PRK13382        308 ------------------------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYN  345 (537)
T ss_pred             ------------------------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEeccc
Confidence                                                      00113799999999999999999999999999999999


Q ss_pred             cccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      +||++.+++..... ....+++|+|++|++++|+| ++++.   ++.|+.|||+|+|++++.||+  |+.+.. |   .+
T Consensus       346 ~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~---~~  415 (537)
T PRK13382        346 ATEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFRE---VPTGEVGTIFVRNDTQFDGYT--SGSTKD-F---HD  415 (537)
T ss_pred             ccccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCC---CCCCCeeEEEEEcCCcccCcc--ccchhh-c---cC
Confidence            99998766543221 23457999999999999999 56654   568999999999999999998  566544 4   26


Q ss_pred             ccceeeeCCeecccCccC
Q 008134          558 CVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~e  575 (576)
                      |  ||+|||++++|+||.
T Consensus       416 g--~~~TGDl~~~~~~g~  431 (537)
T PRK13382        416 G--FMASGDVGYLDENGR  431 (537)
T ss_pred             C--CEeeCceEEEeCCCc
Confidence            7  999999999999874

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-52  Score=457.21  Aligned_cols=407  Identities=23%  Similarity=0.315  Sum_probs=313.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (576)
                      .|+.++|+++++++|+++|++.            +++           .+||+||.++++++|++|.+ .|+++||+|++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai   80 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAV   80 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            5899999999999999999985            333           79999999999999999998 59999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCC-
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-  239 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~-  239 (576)
                      +++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.+..... ..+.++..+...... 
T Consensus        81 ~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  159 (562)
T PRK05677         81 QLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPP  159 (562)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccc
Confidence            999999999999999999999999999999999999999999999999887666555444322 234444332111000 


Q ss_pred             --C-------CCCCC---CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH
Q 008134          240 --D-------SGVSG---GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (576)
Q Consensus       240 --~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  307 (576)
                        .       .....   .........+.+.+..............++++++|+|||||||.||||+++|++++......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~  239 (562)
T PRK05677        160 LKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQC  239 (562)
T ss_pred             hhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHH
Confidence              0       00000   00001123455554433322222334567999999999999999999999999998877665


Q ss_pred             HhhC-CCCCC-CcEEEEecChHHHHHHHH-HHHHHHhCceEEECC-cccccccchhhccCccccceeecccEEEecHHHH
Q 008134          308 KTLI-PNPGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF  383 (576)
Q Consensus       308 ~~~~-~~~~~-~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~-~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l  383 (576)
                      ...+ ..+.. .+++++.+|++|.+++.. ++.++..|++.++.. +..        ...++..|+++++|+++++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~  311 (562)
T PRK05677        240 RALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRD--------LPAMVKELGKWKFSGFVGLNTLF  311 (562)
T ss_pred             HHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCccc--------HHHHHHHHHHcCceEEecHHHHH
Confidence            5544 12333 468899999999998764 566777888766632 211        11133349999999999999999


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Q 008134          384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR  463 (576)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~  463 (576)
                      ..+.......                                               ....+++|.+++||+++++++.+
T Consensus       312 ~~l~~~~~~~-----------------------------------------------~~~~~~lr~v~~gG~~~~~~~~~  344 (562)
T PRK05677        312 VALCNNEAFR-----------------------------------------------KLDFSALKLTLSGGMALQLATAE  344 (562)
T ss_pred             HHHHhCcccc-----------------------------------------------cCChhhceEEEEcCccCCHHHHH
Confidence            8876521100                                               00113899999999999999999


Q ss_pred             HHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          464 FINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       464 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                      .|++.+++++++.||+||++.+++........++++|+|+++++++|+| +++..   ++.|+.|||+|+|+.++.||++
T Consensus       345 ~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gY~~  420 (562)
T PRK05677        345 RWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNE---LPLGEVGELCVKGPQVMKGYWQ  420 (562)
T ss_pred             HHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCC---CCCCCCeEEEEecCccchhhcC
Confidence            9999889999999999999877665554444567899999999999999 55554   6799999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+.|++.|  ..+|  ||+|||+|++|+||.
T Consensus       421 ~~~~t~~~~--~~~g--~~~TGDlg~~~~~G~  448 (562)
T PRK05677        421 RPEATDEIL--DSDG--WLKTGDIALIQEDGY  448 (562)
T ss_pred             Cchhhhhcc--CCCC--cccccceEEECCCCc
Confidence            999999999  4567  999999999999875

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-52  Score=456.63  Aligned_cols=407  Identities=22%  Similarity=0.270  Sum_probs=323.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i  160 (576)
                      .++.++|.++++++|+++|+++            +++           ++||+||.++++++|..|.+. |+++|++|++
T Consensus        10 ~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i   66 (546)
T PRK08314         10 TSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVLL   66 (546)
T ss_pred             CCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEE
Confidence            6899999999999999999987            333           699999999999999999999 9999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCC-
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-  239 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~-  239 (576)
                      +++|+++++++++||+++|++++|++|..+.+++.+++++++++++|++.+....+......+ .++.++..+...... 
T Consensus        67 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  145 (546)
T PRK08314         67 YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPA  145 (546)
T ss_pred             ECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhccc
Confidence            999999999999999999999999999999999999999999999999988777666554333 233444332110000 


Q ss_pred             --CCCCC-------C--CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH
Q 008134          240 --DSGVS-------G--GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK  308 (576)
Q Consensus       240 --~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~  308 (576)
                        .....       .  ...+.....+++......  ........++++++|+|||||||.||||+++|+++++.+....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  223 (546)
T PRK08314        146 EPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSV  223 (546)
T ss_pred             ccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence              00000       0  000122345666554321  1223445678999999999999999999999999999988887


Q ss_pred             hhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHH
Q 008134          309 TLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (576)
Q Consensus       309 ~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~  387 (576)
                      ..+ .+..+|++++.+|++|..++.. ++.++..|+++++.+...        ...+...++++++|++.++|+++..+.
T Consensus       224 ~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~ll  294 (546)
T PRK08314        224 LWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWD--------REAAARLIERYRVTHWTNIPTMVVDFL  294 (546)
T ss_pred             Hhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCC--------HHHHHHHHHHhcCceecccHHHHHHHH
Confidence            777 8899999999999999999865 678899999999954311        112334499999999999999998876


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHh
Q 008134          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~  467 (576)
                      .....                                               .+...+++|.+++||+++++++.+++..
T Consensus       295 ~~~~~-----------------------------------------------~~~~~~~l~~~~~gG~~~~~~~~~~~~~  327 (546)
T PRK08314        295 ASPGL-----------------------------------------------AERDLSSLRYIGGGGAAMPEAVAERLKE  327 (546)
T ss_pred             hCCCc-----------------------------------------------cccCchhhheeeeccccCCHHHHHHHHH
Confidence            42110                                               0001137999999999999999999999


Q ss_pred             hhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          468 CMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       468 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      .+++++++.||+||++..............++|+|++|++++|+|++++..   ++.|..|||+|+|++++.||+++++.
T Consensus       328 ~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~~~~  404 (546)
T PRK08314        328 LTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEE---LPPGEVGEIVVHGPQVFKGYWNRPEA  404 (546)
T ss_pred             HcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcC---CCCCCceEEEEECCchhccccCChhH
Confidence            899999999999999877665544444557999999999999999666665   46889999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCcc
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      |++.|.. .+|.+||+|||+|++|+||
T Consensus       405 t~~~f~~-~~~~~~~~TGDl~~~~~~g  430 (546)
T PRK08314        405 TAEAFIE-IDGKRFFRTGDLGRMDEEG  430 (546)
T ss_pred             hhhhhhh-cCCCceEecCCEEEEcCCC
Confidence            9999843 2455699999999999886

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-52  Score=466.24  Aligned_cols=406  Identities=17%  Similarity=0.166  Sum_probs=304.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...++.++|+++++++|+++|+++.+..        ++.      .+.++.+||+||.++++++|++|++. +++||+|
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V   82 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV   82 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence            34468999999999999999999874210        000      12345799999999999999999987 8999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEc-cCCCC--HHHHHHHHhccCceEEEECchhhhHHHHhhhcCCC--ccEEEEec
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIYFE  233 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~vv~~~  233 (576)
                      +++++|++++++++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+..+.+.+.....+.  ...++.++
T Consensus        83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (631)
T PRK07769         83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD  162 (631)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence            999999999999999999999999999 55554  68899999999999999998876655544332221  12233322


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~  313 (576)
                      ....                       .. ..........++++++|+|||||||.||||+++|+++...+......+ +
T Consensus       163 ~~~~-----------------------~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~  217 (631)
T PRK07769        163 AVPD-----------------------EV-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-E  217 (631)
T ss_pred             cccc-----------------------cc-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-C
Confidence            1100                       00 001111234678999999999999999999999999998888887777 8


Q ss_pred             CCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecc---cEEEecHHHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP---TLMAAVPAIFDRVREGV  390 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~---t~~~~~P~~l~~l~~~~  390 (576)
                      +..+|++++++|++|++++...+.+++.|+++++.++..+...    +..++..+.++++   +++.++|+++..+....
T Consensus       218 ~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~  293 (631)
T PRK07769        218 GQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRR----PGRWIRELARKPGGTGGTFSAAPNFAFEHAAAR  293 (631)
T ss_pred             CCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhC----HHHHHHHHHhhccccCceEeeCCchHHHHHHhh
Confidence            8899999999999999999888888889999988654322111    1223334777765   88999999887664321


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-  469 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-  469 (576)
                      .......                                          .....++||.+++||+++++++.++|.+.| 
T Consensus       294 ~~~~~~~------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~  331 (631)
T PRK07769        294 GLPKDGE------------------------------------------PPLDLSNVKGLLNGSEPVSPASMRKFNEAFA  331 (631)
T ss_pred             ccchhcc------------------------------------------cCcchhheeeEEeccCCCCHHHHHHHHHHHh
Confidence            0000000                                          000114899999999999999999998887 


Q ss_pred             --C---CceecccCcccccCCccccCCCCC---------------------------CCCccCCCCCCcEEEEeecCCCC
Q 008134          470 --G---APIGQAYGLTETCAGSTFSEWDDP---------------------------SVGRVGPPVPCCYIKLVSWDEGG  517 (576)
Q Consensus       470 --~---~~l~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~vG~p~~~~~~~ivd~~~~~  517 (576)
                        |   ..++|.||+||++..++.......                           ...++|+|+++++++|+|.+++.
T Consensus       332 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~  411 (631)
T PRK07769        332 PYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETAS  411 (631)
T ss_pred             hcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCc
Confidence              3   359999999999776554322110                           12489999999999999966665


Q ss_pred             CcCCCCCCCCceEEEccCcccccccCCcccchhhhccc-------------ccccceeeeCCeecccCcc
Q 008134          518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN-------------FHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       518 ~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~-------------~~g~~~~~TGDlg~~d~d~  574 (576)
                      .   ++.|+.|||+|+|++++.|||++|+.|+++|...             .++.+||||||+|+++ ||
T Consensus       412 ~---~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG  477 (631)
T PRK07769        412 E---LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DG  477 (631)
T ss_pred             C---CCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CC
Confidence            4   5689999999999999999999999999999421             1223599999999995 65

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-52  Score=461.06  Aligned_cols=397  Identities=20%  Similarity=0.226  Sum_probs=318.7

Q ss_pred             CCCHHHHHHHHHH-hCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 008134           81 ASTMAALFEQSCK-SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (576)
Q Consensus        81 ~~tl~~~~~~~a~-~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (576)
                      .+.++++++++++ .+|+++|+.+.+           .        ...+.+||+||.++++++|.+|+++|+++||+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~-----------~--------~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~  102 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLD-----------A--------SRKEKYTYKELKELSNKFANVLKELGVEKGDRVF  102 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEEC-----------C--------CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence            3567789999887 479999998742           1        1124799999999999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCC
Q 008134          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK  239 (576)
Q Consensus       160 i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~  239 (576)
                      ++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.........  ..++..+.++.++..... 
T Consensus       103 i~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-  179 (570)
T PRK04319        103 IFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE-  179 (570)
T ss_pred             EECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC-
Confidence            99999999999999999999999999999999999999999999999999876544322  234455666665543210 


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~  319 (576)
                               ......+.++...... ........++++++|+|||||||.||||+++|+++++.+......+ .+.++|+
T Consensus       180 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~  248 (570)
T PRK04319        180 ---------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDV  248 (570)
T ss_pred             ---------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCce
Confidence                     1123456665543222 2222345678999999999999999999999999998888877777 8899999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCceEEEC----CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      +++..|++|..+... ++.++..|+++++.    ++..+.           ..|+++++|+++++|++++.+.+......
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  317 (570)
T PRK04319        249 YWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWY-----------RILEDYKVTVWYTAPTAIRMLMGAGDDLV  317 (570)
T ss_pred             EEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHH-----------HHHHHcCCeEEEeCHHHHHHHHhcCCccc
Confidence            999999999887654 78899999999883    333343           44999999999999999998865311000


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCcee
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~  474 (576)
                      .                                             ....++||.+++||+++++++.+++++.++.+++
T Consensus       318 ~---------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~  352 (570)
T PRK04319        318 K---------------------------------------------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIH  352 (570)
T ss_pred             c---------------------------------------------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeE
Confidence            0                                             0011489999999999999999999999999999


Q ss_pred             cccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--CcccccccCCcccchhh
Q 008134          475 QAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGYFNNPGKTSEV  551 (576)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~GY~~~~~~t~~~  551 (576)
                      +.||+||+++.++..... ...++++|+|+||++++|+| +++..   +++|+.|||+|+|  ++++.||+++++.|++.
T Consensus       353 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~  428 (570)
T PRK04319        353 DNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNE---LPPNRMGNLAIKKGWPSMMRGIWNNPEKYESY  428 (570)
T ss_pred             eceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCC---CCCCCceEEEEcCCCChHHhHhcCCHHHhhhh
Confidence            999999998765544332 33457999999999999999 55554   4689999999997  89999999999999999


Q ss_pred             hcccccccceeeeCCeecccCccC
Q 008134          552 YKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       552 f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |   .+|  ||+|||+|++|+||.
T Consensus       429 ~---~~g--w~~TGDl~~~~~~g~  447 (570)
T PRK04319        429 F---AGD--WYVSGDSAYMDEDGY  447 (570)
T ss_pred             h---cCC--ceEeCcEEEECCCee
Confidence            9   267  999999999999873

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.6e-52  Score=451.98  Aligned_cols=403  Identities=23%  Similarity=0.262  Sum_probs=319.8

Q ss_pred             cccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCC
Q 008134           73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH  152 (576)
Q Consensus        73 ~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv  152 (576)
                      ....+++...++.+++.++++++|+++|+++.+          ++           +++||.||.++++++|++|++.|+
T Consensus        14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~-----------~~~ty~el~~~~~~la~~L~~~g~   72 (537)
T PLN02246         14 LPDIYIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TG-----------RVYTYADVELLSRRVAAGLHKLGI   72 (537)
T ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CC-----------ceeeHHHHHHHHHHHHHHHHHhCC
Confidence            334455666799999999999999999997531          22           379999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEe
Q 008134          153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYF  232 (576)
Q Consensus       153 ~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~  232 (576)
                      ++||+|+++++|+++++++++||+++|++++|++|.++.+++..+++.++++++|++....+.+.+.... .. ..++.+
T Consensus        73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~-~~~i~~  150 (537)
T PLN02246         73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DG-VTVVTI  150 (537)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CC-ceEEEe
Confidence            9999999999999999999999999999999999999999999999999999999998877766554321 12 234444


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh---
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---  309 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---  309 (576)
                      +...             .....+.++..... ...+.....++++++++|||||||.||||+++|++++..+.....   
T Consensus       151 ~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~  216 (537)
T PLN02246        151 DDPP-------------EGCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN  216 (537)
T ss_pred             CCCC-------------CCceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc
Confidence            3321             11234455443221 112233456899999999999999999999999999987765533   


Q ss_pred             -hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHH
Q 008134          310 -LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (576)
Q Consensus       310 -~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~  387 (576)
                       .+ .+.++|++++.+|++|.+++.. ++.++..|+++++.+...        ...+++.++++++|++.++|+++..|.
T Consensus       217 ~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~p~~~~~l~  287 (537)
T PLN02246        217 PNL-YFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFE--------IGALLELIQRHKVTIAPFVPPIVLAIA  287 (537)
T ss_pred             ccc-CCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCC--------HHHHHHHHHHhCceEEEcchHHHHHHh
Confidence             34 7889999999999999999865 667899999999944321        122344499999999999999998876


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHh
Q 008134          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~  467 (576)
                      +.....                                               +...+++|.+++||+++++++.+++++
T Consensus       288 ~~~~~~-----------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~  320 (537)
T PLN02246        288 KSPVVE-----------------------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRA  320 (537)
T ss_pred             cCcccc-----------------------------------------------ccCccceeEEEEecCcCCHHHHHHHHH
Confidence            522100                                               001148999999999999999999999


Q ss_pred             hh-CCceecccCcccccCCccccC-----CCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccc
Q 008134          468 CM-GAPIGQAYGLTETCAGSTFSE-----WDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY  541 (576)
Q Consensus       468 ~~-~~~l~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY  541 (576)
                      .+ ++.+++.||+||++.+++...     .....++++|+|+++++++|+|++++..   ++.|+.|||+|+|++++.||
T Consensus       321 ~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~GY  397 (537)
T PLN02246        321 KLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGAS---LPRNQPGEICIRGPQIMKGY  397 (537)
T ss_pred             HcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCc---CCCCCceEEEEECCchhccc
Confidence            87 788999999999986654321     1123457899999999999999666654   56899999999999999999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++|+.|++.|  +.+|  ||+|||+|++|+||.
T Consensus       398 ~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~  427 (537)
T PLN02246        398 LNDPEATANTI--DKDG--WLHTGDIGYIDDDDE  427 (537)
T ss_pred             cCCchhhhhcc--cCCC--CeeecceEEEeCCCe
Confidence            99999999988  5567  999999999998873

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-52  Score=471.37  Aligned_cols=370  Identities=18%  Similarity=0.208  Sum_probs=295.2

Q ss_pred             CHHHHHHHHHHh--CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           83 TMAALFEQSCKS--HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        83 tl~~~~~~~a~~--~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ++.++|.++++.  +||++|++.            + .           .+||+||.++++++|++|+++|+++|++|+|
T Consensus         5 ~~~~~~~~~a~~~~~pd~~a~~~------------~-~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i   60 (705)
T PRK06060          5 NLAGLLAEQASEAGWYDRPAFYA------------A-D-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLL   60 (705)
T ss_pred             CHHHHHHHHHhhccCCCceEEEe------------c-C-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            789999999886  799999974            1 1           5999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+...        .++          
T Consensus        61 ~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~----------  122 (705)
T PRK06060         61 CLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVA----------  122 (705)
T ss_pred             ECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccc----------
Confidence            99999999999999999999999999999999999999999999999987654432210        000          


Q ss_pred             CCCCCCCCCceEeehHHHHHcC-CCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH-hhCCCCCCCc
Q 008134          241 SGVSGGISNWTVSSFSEVEKLG-KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TLIPNPGRSD  318 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~d  318 (576)
                                   ...++.... ...+....+..+++++||+|||||||.||||+++|+++++.+.++. ..+ .+.++|
T Consensus       123 -------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d  188 (705)
T PRK06060        123 -------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPED  188 (705)
T ss_pred             -------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcc
Confidence                         001111100 0011111234678999999999999999999999999998877664 346 788999


Q ss_pred             EEEEecChHHHHHHH-HHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          319 VYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      ++++..|++|..++. .++.+|..|+++++.+...-.       ..+...+.++++|+++++|+++..+......     
T Consensus       189 ~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~-------~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~-----  256 (705)
T PRK06060        189 TGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTP-------EAAAILSARFGPSVLYGVPNFFARVIDSCSP-----  256 (705)
T ss_pred             eeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCH-------HHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-----
Confidence            999999999998875 477889999999984421111       1123348899999999999999888653210     


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (576)
                                                                  ...++||.+++||+++++++.++|.+.+ +++++|.
T Consensus       257 --------------------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~  292 (705)
T PRK06060        257 --------------------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDG  292 (705)
T ss_pred             --------------------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEee
Confidence                                                        0014899999999999999999998888 5899999


Q ss_pred             cCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      ||+||++..+..........+++|+|+++++++|+| ++++.   +++|+.|||||+|++++.||||+|+.+.     ..
T Consensus       293 YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~---~~~g~~GEl~i~g~~v~~GY~~~~~~~~-----~~  363 (705)
T PRK06060        293 IGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTT---AGPGVEGDLWVRGPAIAKGYWNRPDSPV-----AN  363 (705)
T ss_pred             eeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEccchhhhhhhCCCcccc-----cC
Confidence            999999866544433344567899999999999999 55554   6789999999999999999999998652     23


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||.
T Consensus       364 ~~--~~~TGDl~~~~~dG~  380 (705)
T PRK06060        364 EG--WLDTRDRVCIDSDGW  380 (705)
T ss_pred             CC--cEECCeeEEECCCce
Confidence            45  999999999999874

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-52  Score=461.15  Aligned_cols=417  Identities=16%  Similarity=0.163  Sum_probs=311.9

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      +..+++|+++++.+|+++|+++..           ..      .+..+.+||+||.++++++|++|+++|+++||+|+++
T Consensus        53 n~~~~~l~~~~~~~p~~~A~~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~  115 (629)
T PRK10524         53 NLCHNAVDRHLAKRPEQLALIAVS-----------TE------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIY  115 (629)
T ss_pred             eHHHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            446889999999999999998741           10      1233579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcC-CCccEEEE
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSL-KTIKNVIY  231 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~~~~vv~  231 (576)
                      ++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++..         .+.+.+..... .....++.
T Consensus       116 ~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  195 (629)
T PRK10524        116 MPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLL  195 (629)
T ss_pred             CCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999997642         23333333222 23455666


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHhh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKTL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~  310 (576)
                      ++...... ...     ......+.++.........+.....++++++|+|||||||.||||+++|++++.... .....
T Consensus       196 ~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~  269 (629)
T PRK10524        196 VDRGLAPM-ARV-----AGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTI  269 (629)
T ss_pred             EeCCCCCc-Ccc-----cCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHh
Confidence            55321100 000     011234555544322112222335678999999999999999999999999865443 34445


Q ss_pred             CCCCCCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      + ++.++|++++.+|+.|..+.. .++.+|+.|+++++.+.......    ...+++.++++++|+++++|++++.+.++
T Consensus       270 ~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  344 (629)
T PRK10524        270 F-GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPD----AGIWWRIVEKYKVNRMFSAPTAIRVLKKQ  344 (629)
T ss_pred             c-CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCC----hHHHHHHHHHcCceEEEeCHHHHHHHHhc
Confidence            5 888999999999999988764 47889999999988442211111    23345559999999999999999887653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      .....                                             ++...++||.+++||+++++++.+++.+.+
T Consensus       345 ~~~~~---------------------------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~  379 (629)
T PRK10524        345 DPALL---------------------------------------------RKHDLSSLRALFLAGEPLDEPTASWISEAL  379 (629)
T ss_pred             Ccccc---------------------------------------------cccChhheeEEEEeCCCCCHHHHHHHHHhc
Confidence            11000                                             001114899999999999999999999999


Q ss_pred             CCceecccCcccccCCccccCC----CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC---ccccccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSEW----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYF  542 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~---~v~~GY~  542 (576)
                      ++++++.||+||++...+....    .....+++|+|++|++++|+|++++..   +++|+.|||+|+||   +++.|||
T Consensus       380 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~---~~~g~~Gel~i~gp~~~~~~~~~~  456 (629)
T PRK10524        380 GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEP---CGPNEKGVLVIEGPLPPGCMQTVW  456 (629)
T ss_pred             CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCC---CCCCCcEEEEEcCCCChhhcCCcc
Confidence            9999999999999743322221    123457899999999999999436654   56899999999998   6789999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++++.+.+.+.... +.+||+|||+|++|+||.
T Consensus       457 ~~~~~~~~~~~~~~-~~~~~~TGDl~~~d~dG~  488 (629)
T PRK10524        457 GDDDRFVKTYWSLF-GRQVYSTFDWGIRDADGY  488 (629)
T ss_pred             CChHHHHHhhhccC-CCcEEEcCCcEEEcCCCc
Confidence            99988877663222 224999999999999884

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-51  Score=447.81  Aligned_cols=396  Identities=22%  Similarity=0.287  Sum_probs=328.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.+.|++.++.+|+++|+.+            +++           ++||+||.+++.++|+.|.+.|+++||+|++
T Consensus         4 ~~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l   60 (513)
T PRK07656          4 WMTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVAI   60 (513)
T ss_pred             cccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            443           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++.++.+++..+++++++++++++.............++..+.++......... 
T Consensus        61 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  139 (513)
T PRK07656         61 WAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP-  139 (513)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc-
Confidence            9999999999999999999999999999999999999999999999999887766666555556666666654432211 


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                             ......+|.++...... ........++++++|+|||||||.||+|.++|+++...+......+ .+.++|++
T Consensus       140 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  210 (513)
T PRK07656        140 -------HTEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRY  210 (513)
T ss_pred             -------CccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeE
Confidence                   00123456666644322 1223456788999999999999999999999999999888888888 89999999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      ++.+|++|.+++.. ++.++..|+++++.   ++..+           ++.++++++|++.++|+++..+........  
T Consensus       211 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----------~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--  277 (513)
T PRK07656        211 LAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEV-----------FRLIETERITVLPGPPTMYNSLLQHPDRSA--  277 (513)
T ss_pred             EEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHH-----------HHHHHHhCCeEEechHHHHHHHHcCCCcCC--
Confidence            99999999999876 77889999999883   33333           344999999999999999998876321100  


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC-ceec
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQ  475 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~-~l~~  475 (576)
                                                                   ...+++|.+++||+++++++.+.|.+.+++ .++|
T Consensus       278 ---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~  312 (513)
T PRK07656        278 ---------------------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLT  312 (513)
T ss_pred             ---------------------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence                                                         011489999999999999999999999988 8999


Q ss_pred             ccCcccccCCccccCCCCC-C--CCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134          476 AYGLTETCAGSTFSEWDDP-S--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (576)
Q Consensus       476 ~YG~TE~~~~~~~~~~~~~-~--~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f  552 (576)
                      .||+||++++++....... .  ..++|+|+++++++|+| +++..   ++.|..|||+|+|+.++.||+++++.+...|
T Consensus       313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  388 (513)
T PRK07656        313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEE---VPVGEVGELLVRGPNVMKGYYDDPEATAAAI  388 (513)
T ss_pred             EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCC---CCCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence            9999999887776554332 2  57999999999999999 55554   5689999999999999999999999999888


Q ss_pred             cccccccceeeeCCeecccCccC
Q 008134          553 KVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       553 ~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                        ..+|  ||+|||+|++++||.
T Consensus       389 --~~~~--~~~tGDl~~~~~~g~  407 (513)
T PRK07656        389 --DADG--WLHTGDLGRLDEEGY  407 (513)
T ss_pred             --ccCC--ceeccceEEEcCCee
Confidence              4467  999999999998873

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.9e-52  Score=458.69  Aligned_cols=404  Identities=18%  Similarity=0.156  Sum_probs=301.3

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (576)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (576)
                      ++...++.++|+++++++|+++|+++.+..        +..      .+.++.+||+||.++++++|++|.+. +++||+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~   94 (612)
T PRK12476         30 LPPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGDR   94 (612)
T ss_pred             CCccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCE
Confidence            344478999999999999999999874210        000      12335799999999999999999987 999999


Q ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEc-cCCCC--HHHHHHHHhccCceEEEECchhhhHHHHhhhcCCC--ccEEEEe
Q 008134          158 AAILAETCVEWFIAFQGCFRQSITVVTI-YSSLG--EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT--IKNVIYF  232 (576)
Q Consensus       158 V~i~~~~s~~~~va~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~--~~~vv~~  232 (576)
                      |+++++|+++++++++||+++|++++|+ ++.++  .+++.+++++++++++|++....+.+......++.  ...++.+
T Consensus        95 V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~  174 (612)
T PRK12476         95 VAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAI  174 (612)
T ss_pred             EEEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEe
Confidence            9999999999999999999999999999 57776  78999999999999999998776665544333221  1234433


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCC
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  312 (576)
                      +....                       .. ..........++++++|+|||||||.||||+++|+++++.+......+ 
T Consensus       175 ~~~~~-----------------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-  229 (612)
T PRK12476        175 DAIPD-----------------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-  229 (612)
T ss_pred             ccccc-----------------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-
Confidence            32100                       00 001111234678999999999999999999999999998877766666 


Q ss_pred             C-CCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccc-cccchhhccCccccc--eeecccEEEecHHHHHHHHH
Q 008134          313 N-PGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM-TDTSSKIKKGTKGDV--SVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       313 ~-~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l-~~~~~~~~~~~~~~i--~~~~~t~~~~~P~~l~~l~~  388 (576)
                      . +.+++++++++|++|.+++...+.+++.|+++++..+..+ .+.     ..++..+  .++++|+++.+|+++..+..
T Consensus       230 ~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p-----~~~~~~i~~~~~~~t~~~~~P~~~~~l~~  304 (612)
T PRK12476        230 DLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRP-----QRWIKALSEGSRTGRVVTAAPNFAYEWAA  304 (612)
T ss_pred             ccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHH-----HHHHHHHhhhccCCeEEEeCCcHHHHHHH
Confidence            6 7889999999999999999877766667777666433211 111     2233337  45899999999999887765


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      ........                                           .....+++| +++||+++++++.+.|.+.
T Consensus       305 ~~~~~~~~-------------------------------------------~~~~l~~lr-~~~gg~~~~~~~~~~~~~~  340 (612)
T PRK12476        305 QRGLPAEG-------------------------------------------DDIDLSNVV-LIIGSEPVSIDAVTTFNKA  340 (612)
T ss_pred             HhcChhhh-------------------------------------------cCcchhHhe-EEecccCCCHHHHHHHHHH
Confidence            21000000                                           000113789 9999999999999999887


Q ss_pred             h---CC---ceecccCcccccCCccccCCCC---------------------------CCCCccCCCCCCcEEEEeecCC
Q 008134          469 M---GA---PIGQAYGLTETCAGSTFSEWDD---------------------------PSVGRVGPPVPCCYIKLVSWDE  515 (576)
Q Consensus       469 ~---~~---~l~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~~~~~~~ivd~~~  515 (576)
                      +   |+   .+++.||+||++..++...+..                           ...+++|+|++|++++|+|.++
T Consensus       341 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~  420 (612)
T PRK12476        341 FAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDT  420 (612)
T ss_pred             HHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCC
Confidence            7   43   4899999999876544332211                           0125899999999999999544


Q ss_pred             CCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccc-----cc---------ccceeeeCCeecccCcc
Q 008134          516 GGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN-----FH---------CVWMLCICLYVSCDKTL  574 (576)
Q Consensus       516 ~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~-----~~---------g~~~~~TGDlg~~d~d~  574 (576)
                      ++.   +++|+.|||+|+|++++.|||++|+.|+++|...     .+         +.+||+|||+|+++ ||
T Consensus       421 g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG  489 (612)
T PRK12476        421 GAE---LPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DG  489 (612)
T ss_pred             CcC---CCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CC
Confidence            655   5699999999999999999999999999999421     01         24699999999985 65

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.5e-51  Score=447.59  Aligned_cols=393  Identities=21%  Similarity=0.268  Sum_probs=312.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++.+|+++|+++..          +.       .+.++.+||+||.++++++|.+|+++|+++|++|+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~   84 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQ   84 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            689999999999999999998631          11       1223579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.++++++++++...     ..........+..+.++.++...
T Consensus        85 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (538)
T TIGR03208        85 LPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG  164 (538)
T ss_pred             CCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC
Confidence            9999999999999999999999999999999999999999999999987642     22223333344555666654321


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCC--C-----CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS--P-----VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~  309 (576)
                      .               ..++++.......  +     .......++++++|+|||||||.||||+++|++++..+.....
T Consensus       165 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~  229 (538)
T TIGR03208       165 D---------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE  229 (538)
T ss_pred             C---------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence            1               1122222111000  0     1112356789999999999999999999999999999888888


Q ss_pred             hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~  385 (576)
                      .+ .++.+|++++.+|++|..++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|+++..
T Consensus       230 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~  297 (538)
T TIGR03208       230 RL-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTD  297 (538)
T ss_pred             hc-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence            87 8899999999999999988654 78889999999884   34444444           999999999999999988


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Q 008134          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (576)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~  465 (576)
                      +........                                               ...+++|.+++||+++++++.+++
T Consensus       298 l~~~~~~~~-----------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~  330 (538)
T TIGR03208       298 LCRAVKESG-----------------------------------------------APVPSLFTFLCAGAPIPGILVERA  330 (538)
T ss_pred             HHhchhccC-----------------------------------------------CCCCcceEEEEcCCCCCHHHHHHH
Confidence            765321100                                               011489999999999999999999


Q ss_pred             HhhhCCceecccCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          466 NICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                      .+.++++++|.||+||++++.+......  ....++|+|++|++++|+| +++..   ++.|+.|||+|+|++++.||++
T Consensus       331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~  406 (538)
T TIGR03208       331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAK---LSQGETGRLLVRGCSNFGGYLK  406 (538)
T ss_pred             HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCC---CcCCCCcEEEEecCcccccccC
Confidence            9888999999999999987765443222  1236899999999999999 55554   5689999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+.|+  +  +.+|  ||+|||+|++|+||.
T Consensus       407 ~~~~~~--~--~~~~--~~~TGD~~~~~~~g~  432 (538)
T TIGR03208       407 RPHLNS--T--DAEG--WFDTGDLAFQDAEGY  432 (538)
T ss_pred             Cccccc--c--cCCC--ceeccceEEECCCCc
Confidence            999875  2  3456  999999999999874

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-52  Score=455.02  Aligned_cols=390  Identities=19%  Similarity=0.211  Sum_probs=297.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.+.|.++|+++|+++|+.+.           ++.          +.+||+||.++++++|+.|.++|+++|++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~   72 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVI   72 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence            58999999999999999999753           222          369999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.........+........ ++.++......  
T Consensus        73 ~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--  149 (540)
T PRK05857         73 SDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR--  149 (540)
T ss_pred             cCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc--
Confidence            999999999999999999999999999999999999999999999998865422221111111222 22222211000  


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh----hCCCCCCC
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGRS  317 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~  317 (576)
                              .    +.+...  ...........++++++++|||||||.||||+++|+++.+.......    .+ ....+
T Consensus       150 --------~----~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~~  214 (540)
T PRK05857        150 --------E----SEHSLD--AASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVVG  214 (540)
T ss_pred             --------c----cccccc--ccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-ccccC
Confidence                    0    000000  00011123346789999999999999999999999999876544322    22 45567


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHH
Q 008134          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~  395 (576)
                      +++++.+|++|..+++..+.+++.|+++++  .++..+           ++.++++++|+++++|+++..+........ 
T Consensus       215 ~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~-----------~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-  282 (540)
T PRK05857        215 ETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSL-----------LEILTTNAVATTCLVPTLLSKLVSELKSAN-  282 (540)
T ss_pred             ceeeecCCccccchHHHHHHHhhcceeEEecCCChhHH-----------HHHHHhcCcceEEeChHHHHHHHhccccCC-
Confidence            899999999999999888889999999877  333333           444999999999999999998865321100 


Q ss_pred             hcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceec
Q 008134          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (576)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~  475 (576)
                                                                    ...+++|.+++||++++....+++ ..+++++++
T Consensus       283 ----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~  315 (540)
T PRK05857        283 ----------------------------------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQ  315 (540)
T ss_pred             ----------------------------------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeec
Confidence                                                          011489999999999998877644 467999999


Q ss_pred             ccCcccccCCccccCCC-----CCCCCccCCCCCCcEEEEeecCCCC-CcC--CCCCCCCceEEEccCcccccccCCccc
Q 008134          476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGG-YKT--SDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~-~~~--~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      .||+||++.........     ..+.+++|+|++|++++|+| +++. ..+  .++.|+.|||+|+|++++.|||++++.
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~  394 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER  394 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccc
Confidence            99999997644322221     12347899999999999999 4443 221  134678999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++.|   .+|  ||+|||+|++|+||.
T Consensus       395 t~~~~---~~g--~~~TGDlg~~d~~g~  417 (540)
T PRK05857        395 TAEVL---IDG--WVNTGDLLERREDGF  417 (540)
T ss_pred             hhhhc---CCC--ceeccceEEEcCCce
Confidence            99998   477  999999999999874

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-51  Score=444.50  Aligned_cols=373  Identities=24%  Similarity=0.289  Sum_probs=306.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      +.+++++|++++.++||++|+.+            ++           +.+||+||.++++++|++|.+.|+++||+|++
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i   57 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL   57 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            22           37999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+.++++++|||+++|++++|+++..+.+++..+++++++++++++......+....                    
T Consensus        58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~--------------------  117 (483)
T PRK03640         58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI--------------------  117 (483)
T ss_pred             ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--------------------
Confidence            999999999999999999999999999999999999999999999999886554332210                    


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                                 ...++++...............++++++|+|||||||.||+|+++|+++...+......+ ++.++|++
T Consensus       118 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~  185 (483)
T PRK03640        118 -----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCW  185 (483)
T ss_pred             -----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEE
Confidence                       011333332221122222344678999999999999999999999999988877777777 89999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCch
Q 008134          321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (576)
Q Consensus       321 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~  400 (576)
                      ++.+|++|..++..++.++..|+++++.+...        ...+++.++++++|++.++|+++..+.......       
T Consensus       186 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------  250 (483)
T PRK03640        186 LAAVPIFHISGLSILMRSVIYGMRVVLVEKFD--------AEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------  250 (483)
T ss_pred             EEecCHHHHHHHHHHHHHHhcCCEEEecCCCC--------HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-------
Confidence            99999999999988889999999999844211        122344499999999999999999886532110       


Q ss_pred             hHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcc
Q 008134          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (576)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (576)
                                                               ....+||.+++||+++++.+.++++.. ++++++.||+|
T Consensus       251 -----------------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~t  288 (483)
T PRK03640        251 -----------------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMT  288 (483)
T ss_pred             -----------------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccC
Confidence                                                     001389999999999999999988875 99999999999


Q ss_pred             cccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccc
Q 008134          481 ETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHC  558 (576)
Q Consensus       481 E~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g  558 (576)
                      |++..+......  ....+++|+|+++++++|+| +. .   +++.|..|||+|+|++++.||+++|+.+++.|   .+|
T Consensus       289 E~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~~-~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~  360 (483)
T PRK03640        289 ETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-DG-V---VVPPFEEGEIVVKGPNVTKGYLNREDATRETF---QDG  360 (483)
T ss_pred             cccccccccCcccccccCCCcccccCCcEEEEec-CC-C---cCCCCCceEEEEECcchhhhhcCCHHHHHHHH---hcC
Confidence            987654333322  23458999999999999988 32 2   26789999999999999999999999999998   467


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                        ||+|||+|++|+||.
T Consensus       361 --~~~tGDl~~~~~~g~  375 (483)
T PRK03640        361 --WFKTGDIGYLDEEGF  375 (483)
T ss_pred             --CeeccceEEEcCCCC
Confidence              999999999999874

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=8.5e-52  Score=453.05  Aligned_cols=391  Identities=25%  Similarity=0.294  Sum_probs=301.9

Q ss_pred             HHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEc
Q 008134           84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILA  162 (576)
Q Consensus        84 l~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~  162 (576)
                      +..+|++  +.+|+++|+++..          .+           .++||+||.++++++|++|++ .|+++||+|++++
T Consensus        43 ~~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~   99 (560)
T PLN02574         43 VSFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL   99 (560)
T ss_pred             HHHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            4455655  6799999998521          11           269999999999999999999 9999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|+++++++++||+++|++++|++|.++.+++.++++++++++++++.+..+.+...     .. .++.++......   
T Consensus       100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~---  170 (560)
T PLN02574        100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GV-PVIGVPENYDFD---  170 (560)
T ss_pred             CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CC-cEEecCcccccc---
Confidence            999999999999999999999999999999999999999999999998766555432     11 122222110000   


Q ss_pred             CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh----CCCCCCCc
Q 008134          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL----IPNPGRSD  318 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~~~~d  318 (576)
                       .   .......++++...... ........++++++|+|||||||.||||+++|+++++.+..+...    +.....++
T Consensus       171 -~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  245 (560)
T PLN02574        171 -S---KRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN  245 (560)
T ss_pred             -c---CccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCc
Confidence             0   00112345555443221 112234467899999999999999999999999999877765431    21234568


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      +++..+|++|.+++.. ++.++..|+++++.   ++..+.           ..++++++|++.++|+++..+.+..... 
T Consensus       246 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~~~~~~-  313 (560)
T PLN02574        246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMV-----------KVIDRFKVTHFPVVPPILMALTKKAKGV-  313 (560)
T ss_pred             EEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHH-----------HHHHHcCCeEEecCCHHHHHHHhCcccc-
Confidence            8999999999999866 55678889999884   333344           4499999999999999999887632110 


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCce
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPI  473 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l  473 (576)
                                                                   +....++||.+++||+++++++.+.|.+.+ ++.+
T Consensus       314 ---------------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v  348 (560)
T PLN02574        314 ---------------------------------------------CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDF  348 (560)
T ss_pred             ---------------------------------------------ccCccccceEEEEecccCCHHHHHHHHHHCCCCcE
Confidence                                                         000114899999999999999999988877 7899


Q ss_pred             ecccCcccccCCccccCC--CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhh
Q 008134          474 GQAYGLTETCAGSTFSEW--DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV  551 (576)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~  551 (576)
                      ++.||+||++.+++....  .....+++|+|+++++++|+|++++..   ++.|+.|||+|+|++++.||+++|+.|++.
T Consensus       349 ~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~---~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~  425 (560)
T PLN02574        349 IQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCL---LPPGNCGELWIQGPGVMKGYLNNPKATQST  425 (560)
T ss_pred             EecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcC---CCCCCCeEEEEECcchhhhhcCChhHhhhh
Confidence            999999999866543222  123457999999999999999777754   568999999999999999999999999999


Q ss_pred             hcccccccceeeeCCeecccCccC
Q 008134          552 YKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       552 f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |  +.+|  ||+|||+|++|+||.
T Consensus       426 ~--~~~g--~~~TGDlg~~~~~G~  445 (560)
T PLN02574        426 I--DKDG--WLRTGDIAYFDEDGY  445 (560)
T ss_pred             c--cCCC--CcccceEEEEECCCe
Confidence            8  5577  999999999998873

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.2e-51  Score=448.66  Aligned_cols=396  Identities=19%  Similarity=0.220  Sum_probs=309.4

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      +.+...|+.++|.++++++|+++|+.+..          +|           +.+||+||.++++++|..|++.|+++||
T Consensus        23 ~~~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~la~~L~~~g~~~g~   81 (546)
T PLN02330         23 PVPDKLTLPDFVLQDAELYADKVAFVEAV----------TG-----------KAVTYGEVVRDTRRFAKALRSLGLRKGQ   81 (546)
T ss_pred             CCCCCCcHHHHHhhhhhcCCCccEEEecC----------CC-----------CcccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            34556789999999999999999997521          23           2699999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCC
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      +|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++......+....     . .++.++...
T Consensus        82 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~-~~i~~~~~~  155 (546)
T PLN02330         82 VVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----L-PVIVLGEEK  155 (546)
T ss_pred             EEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----C-cEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999988776664421     1 233333221


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCC--CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-CC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PN  313 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~  313 (576)
                      .            .....+.++........  .......++++++|+|||||||.||||+++|++++..+......+ +.
T Consensus       156 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~  223 (546)
T PLN02330        156 I------------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPE  223 (546)
T ss_pred             C------------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCcc
Confidence            0            11234566554332211  112344578999999999999999999999999987765432222 12


Q ss_pred             CCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      ....++++..+|++|.+++.. ++.+|..|+++++.   ++..+++           .++++++|++.++|+++..+...
T Consensus       224 ~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~-----------~i~~~~vt~~~~~P~~~~~l~~~  292 (546)
T PLN02330        224 MIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLN-----------ALITQEVSFAPIVPPIILNLVKN  292 (546)
T ss_pred             ccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHH-----------HHHHcCCeeeecCCHHHHHHHhC
Confidence            224568999999999998865 66789999999884   3334444           49999999999999999988653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      .......                                       +.      ..++|.+++||+++++++.++|++.+
T Consensus       293 ~~~~~~~---------------------------------------~~------~~~l~~i~~~g~~l~~~~~~~~~~~~  327 (546)
T PLN02330        293 PIVEEFD---------------------------------------LS------KLKLQAIMTAAAPLAPELLTAFEAKF  327 (546)
T ss_pred             ccccccc---------------------------------------cc------hheeeeEEEcCCcCCHHHHHHHHHHc
Confidence            1100000                                       00      01589999999999999999999988


Q ss_pred             -CCceecccCcccccCCccccC-CC----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          470 -GAPIGQAYGLTETCAGSTFSE-WD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       470 -~~~l~~~YG~TE~~~~~~~~~-~~----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                       ++++++.||+||++++..... +.    .....++|+|++|++++|+|++++..   +|+|+.|||+|+|+.++.||++
T Consensus       328 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~---~p~g~~Gel~v~g~~~~~gy~~  404 (546)
T PLN02330        328 PGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRS---LPKNTPGELCVRSQCVMQGYYN  404 (546)
T ss_pred             CCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCcc---CCCCCceEEEEecchhhhhhcc
Confidence             899999999999876543221 11    12336899999999999999666654   5689999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCcc
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      +++.+++.|  +.+|  ||+|||+|++|+||
T Consensus       405 ~~~~~~~~~--~~~g--~~~TGD~~~~~~dG  431 (546)
T PLN02330        405 NKEETDRTI--DEDG--WLHTGDIGYIDDDG  431 (546)
T ss_pred             Cccchhhhc--cCCC--ceecccEEEEeCCC
Confidence            999999888  5566  99999999999887

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=3.8e-51  Score=445.95  Aligned_cols=390  Identities=22%  Similarity=0.249  Sum_probs=314.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++++||++|+++            +++           .+||+||.++++++|..|.+.|+++|++|++
T Consensus        20 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v   76 (542)
T PRK06155         20 ERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVAL   76 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            37899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++.++.+++..+++++++++++++.+....+.+........+.++.++...... 
T Consensus        77 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (542)
T PRK06155         77 MCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS-  155 (542)
T ss_pred             ECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc-
Confidence            9999999999999999999999999999999999999999999999999887776665544333345566555432100 


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                           ....+....   +..  ...........++++++|+|||||||.||||+++|+++.+........+ .+.+++++
T Consensus       156 -----~~~~~~~~~---~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~  224 (542)
T PRK06155        156 -----VPAGWSTAP---LPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVL  224 (542)
T ss_pred             -----cccccchhh---hcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEE
Confidence                 000000011   110  1111112344678999999999999999999999999998887777777 89999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          321 LAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       321 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      ++..|++|..++..++.++..|+++++.+   +..+.+.           |+++++|++.++|+++..+........   
T Consensus       225 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~~---  290 (542)
T PRK06155        225 YTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPA-----------VRRHGATVTYLLGAMVSILLSQPARES---  290 (542)
T ss_pred             EEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHcCcCccc---
Confidence            99999999999988899999999999843   3344444           999999999999999988765321100   


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceeccc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAY  477 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~Y  477 (576)
                                                                  ...+++|.++.||  +++++.+.|++.++++++|.|
T Consensus       291 --------------------------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~Y  324 (542)
T PRK06155        291 --------------------------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGY  324 (542)
T ss_pred             --------------------------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeee
Confidence                                                        0114788887666  578888999988999999999


Q ss_pred             CcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC---cccccccCCcccchhhhcc
Q 008134          478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF---NVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       478 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~---~v~~GY~~~~~~t~~~f~~  554 (576)
                      |+||++.++.... .....+++|+|+++++++|+| ++++.   ++.|..|||+|+|+   +++.||+++++.|++.|  
T Consensus       325 G~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~--  397 (542)
T PRK06155        325 GSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQE---LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW--  397 (542)
T ss_pred             cccccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCCccccchhhcCCHHHHHHhh--
Confidence            9999988765532 334567899999999999999 55654   56899999999998   69999999999999988  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       .+|  ||+|||+|++|+||.
T Consensus       398 -~~~--~~~TGD~~~~~~dG~  415 (542)
T PRK06155        398 -RNL--WFHTGDRVVRDADGW  415 (542)
T ss_pred             -cCC--cEeccceEEEcCCce
Confidence             467  999999999998873

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.8e-51  Score=487.43  Aligned_cols=405  Identities=23%  Similarity=0.283  Sum_probs=317.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...++.++|+++++++|+++|++..           +++           ++||+||.++++++|++|++ ++++||+|
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V  668 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV  668 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence            44579999999999999999999742           222           69999999999999999987 48999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhh--hcCCCccEEEEecCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVS--SSLKTIKNVIYFENDG  236 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~--~~~~~~~~vv~~~~~~  236 (576)
                      +++++|+++++++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+..  ...+....++..++..
T Consensus       669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  748 (1146)
T PRK08633        669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK  748 (1146)
T ss_pred             EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence            99999999999999999999999999999999999999999999999999987766554211  0122233444443311


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  311 (576)
                      ...          .....+.+........     ........++|+++|+|||||||.||||+++|+++++.+......+
T Consensus       749 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~  818 (1146)
T PRK08633        749 AKI----------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF  818 (1146)
T ss_pred             ccc----------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc
Confidence            100          0001122211110000     0001345689999999999999999999999999999998888888


Q ss_pred             CCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          312 PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       312 ~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                       ++.++|++++.+|++|.+++.. .+.+++.|+++++....  .+     ...+++.++++++|++.++|++++.+.+..
T Consensus       819 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~  890 (1146)
T PRK08633        819 -NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP--TD-----ALGIAKLVAKHRATILLGTPTFLRLYLRNK  890 (1146)
T ss_pred             -CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC--CC-----HHHHHHHHHHcCCeEEEecHHHHHHHHhcc
Confidence             8899999999999999999876 78889999999883211  01     122334499999999999999999876532


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                      ...                                               +...+++|.+++||+++++++.+++++.+|
T Consensus       891 ~~~-----------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g  923 (1146)
T PRK08633        891 KLH-----------------------------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFG  923 (1146)
T ss_pred             ccC-----------------------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhC
Confidence            100                                               011248999999999999999999999999


Q ss_pred             CceecccCcccccCCccccCCC----------CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccc
Q 008134          471 APIGQAYGLTETCAGSTFSEWD----------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (576)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~G  540 (576)
                      +++++.||+||++++++...+.          ..+.+++|+|+||++++|+|+++++.   +++|+.|||+|+|++++.|
T Consensus       924 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~g 1000 (1146)
T PRK08633        924 IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEE---LPPGEDGLILIGGPQVMKG 1000 (1146)
T ss_pred             CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCcc---CCCCCceEEEEcCCCcccc
Confidence            9999999999998776544321          12457899999999999999766654   5699999999999999999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++|+.|++.|. +.+|++||+|||+|++|+||.
T Consensus      1001 Y~~~~~~t~~~~~-~~~~~~~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633       1001 YLGDPEKTAEVIK-DIDGIGWYVTGDKGHLDEDGF 1034 (1146)
T ss_pred             ccCCccchHHHhh-cCCCCCeEECCCEEEEcCCce
Confidence            9999999999983 334556999999999999874

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-51  Score=441.48  Aligned_cols=378  Identities=23%  Similarity=0.286  Sum_probs=307.2

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (576)
                      ..+.+.|+++|+++||++|+++            +++           .+||+||.++++++|++|++ .|+++|++|++
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i   58 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAI   58 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            3678999999999999999986            443           79999999999999999986 79999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++...+.+.+...... ...++.+.       
T Consensus        59 ~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  130 (496)
T PRK06839         59 LSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT-------  130 (496)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec-------
Confidence            9999999999999999999999999999999999999999999999999887766555432221 12222221       


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                                   +++++...   .........++++++|+|||||||.||+|+++|+++..........+ .+..+|++
T Consensus       131 -------------~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~  193 (496)
T PRK06839        131 -------------SLKEIEDR---KIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRS  193 (496)
T ss_pred             -------------chHhhhcc---CCCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeE
Confidence                         12222211   11122345678999999999999999999999999987776666667 88899999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      +..+|++|..++.. .+.++..|+++++.   ++..+.           +.++++++|++.++|++++.+.......   
T Consensus       194 l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~~~~~~---  259 (496)
T PRK06839        194 IVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-----------SMIEKHKVTVVMGVPTIHQALINCSKFE---  259 (496)
T ss_pred             EEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHH-----------HHHHhhCCeEEEehHHHHHHHHhCcccc---
Confidence            99999999988865 56789999999884   333333           4499999999999999999887632110   


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecc
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA  476 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~  476 (576)
                                                                  ....+++|.+++||+++++++.+.++.. |+++++.
T Consensus       260 --------------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~  294 (496)
T PRK06839        260 --------------------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQG  294 (496)
T ss_pred             --------------------------------------------cCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEee
Confidence                                                        0011489999999999999999999887 9999999


Q ss_pred             cCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134          477 YGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~  554 (576)
                      ||+||++..++.....  ....+++|+|+++++++|+| +++..   ++.|+.|||+|+|+.++.||+++|+.++..|  
T Consensus       295 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--  368 (496)
T PRK06839        295 FGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNK---VEVGEVGELLIRGPNVMKEYWNRPDATEETI--  368 (496)
T ss_pred             ccCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCC---CCCCCceEEEEECCCcchhhcCChHHHHHHH--
Confidence            9999998755433222  23457999999999999999 55554   5799999999999999999999999999887  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       .+|  ||+|||+|++|+||-
T Consensus       369 -~~g--~~~TGDl~~~~~~g~  386 (496)
T PRK06839        369 -QDG--WLCTGDLARVDEDGF  386 (496)
T ss_pred             -cCC--CeeecceEEEcCCCc
Confidence             477  999999999998863

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-51  Score=445.83  Aligned_cols=404  Identities=21%  Similarity=0.221  Sum_probs=305.2

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      +.+...++.++|+++++++|+++|+++.           ++.          +.+||+||.++++++|++|.+.|+++||
T Consensus        11 ~~~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd   69 (534)
T PRK05852         11 ASDFGPRIADLVEVAATRLPEAPALVVT-----------ADR----------IAISYRDLARLVDDLAGQLTRSGLLPGD   69 (534)
T ss_pred             hhhhcccHHHHHHHHHHhCCCCcEEEec-----------CCC----------CcccHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            4466689999999999999999999863           211          3699999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCC
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      +|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++...........  .......+.+....
T Consensus        70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~  147 (534)
T PRK05852         70 RVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPT--TRWWPLTVNVGGDS  147 (534)
T ss_pred             EEEEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccc--ccccceeeeecccc
Confidence            9999999999999999999999999999999999999999999999999999865332111100  00011111111110


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~  316 (576)
                      ...    +    ......+....  ............+++.++|+|||||||.||||+++|+++.+.+......+ .+..
T Consensus       148 ~~~----~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~  216 (534)
T PRK05852        148 GPS----G----GTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSP  216 (534)
T ss_pred             ccc----c----ccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCC
Confidence            000    0    00000000000  00000111122356789999999999999999999999999998888888 8999


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHH
Q 008134          317 SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (576)
Q Consensus       317 ~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~  395 (576)
                      +|++++.+|++|..++.. ++.+++.|+++++.....+ +     ...++..++++++|+++++|+++..+.........
T Consensus       217 ~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  290 (534)
T PRK05852        217 RDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF-S-----AHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS  290 (534)
T ss_pred             cceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc-C-----HHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc
Confidence            999999999999999876 6778888998887332111 1     11233449999999999999999988764321100


Q ss_pred             hcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceec
Q 008134          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (576)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~  475 (576)
                                                                   ....+++|.++++|+++++++.+.|.+.+++++++
T Consensus       291 ---------------------------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~  325 (534)
T PRK05852        291 ---------------------------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVC  325 (534)
T ss_pred             ---------------------------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhh
Confidence                                                         00114899999999999999999999999999999


Q ss_pred             ccCcccccCCccccCCC-----C---CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          476 AYGLTETCAGSTFSEWD-----D---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-----~---~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      .||+||++..++.....     .   ...+.+|+ .+|++++|+| ++++.   +++|+.|||+|+|+.+++||+++|+.
T Consensus       326 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~---~~~g~~Gel~v~g~~v~~gY~~~~~~  400 (534)
T PRK05852        326 AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLP---LPAGAVGEVWLRGTTVVRGYLGDPTI  400 (534)
T ss_pred             ccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCC---CCCCCceEEEEecCcccchhcCCccc
Confidence            99999998766543221     1   12234444 6999999999 56654   56899999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++.|   .+|  ||+|||+|++|+||.
T Consensus       401 t~~~~---~~g--~~~TGD~~~~d~dG~  423 (534)
T PRK05852        401 TAANF---TDG--WLRTGDLGSLSAAGD  423 (534)
T ss_pred             chhhh---cCC--CcccCceEEEeCCCc
Confidence            99998   467  999999999999874

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.1e-51  Score=463.95  Aligned_cols=390  Identities=17%  Similarity=0.183  Sum_probs=295.8

Q ss_pred             CCCHHHHHHHHHHhCCC-CcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 008134           81 ASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (576)
                      ..|+.++|+++++++|+ ++|+..            ++          ++++||+||.++++++|++|++. +++||+|+
T Consensus       203 ~~t~~~~l~~~~~~~p~~~~a~~~------------~~----------~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Va  259 (718)
T PRK08043        203 RETLYEALLSAQYRYGAGKPCIED------------VN----------FTPDSYRKLLKKTLFVGRILEKY-SVEGERIG  259 (718)
T ss_pred             CCCHHHHHHHHHHHhCCCCcceEc------------CC----------CCcccHHHHHHHHHHHHHHHHHh-cCCCceEE
Confidence            47899999999999998 577753            11          13699999999999999999987 59999999


Q ss_pred             EEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHH--HhhhcCCCccEEEEecCCCC
Q 008134          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLS--AVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       160 i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~--~~~~~~~~~~~vv~~~~~~~  237 (576)
                      ++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+...  .....++.... +.++....
T Consensus       260 l~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~  338 (718)
T PRK08043        260 LMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKD  338 (718)
T ss_pred             EEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhh
Confidence            9999999999999999999999999999999999999999999999999877544211  01111112222 22221100


Q ss_pred             CCCCCCCCCCCCceEeehHH--HH-HcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          238 EKDSGVSGGISNWTVSSFSE--VE-KLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                       .             ..+.+  .. ..............++|+++|+|||||||.||||+++|+++++.+.+....+ ++
T Consensus       339 -~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~  403 (718)
T PRK08043        339 -D-------------VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DF  403 (718)
T ss_pred             -h-------------cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CC
Confidence             0             00111  00 0000001111234679999999999999999999999999999888887777 89


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  393 (576)
                      +++|++++.+|++|.+++.. ++.++..|+++++.+....       ...+.+.+.++++|+++++|+++..+.....  
T Consensus       404 ~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~-------~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~--  474 (718)
T PRK08043        404 TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLH-------YRIVPELVYDRNCTVLFGTSTFLGNYARFAN--  474 (718)
T ss_pred             CccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCccc-------HHHHHHHHHhcCCeEEEchHHHHHHhhhhcC--
Confidence            99999999999999999865 7788999999998442100       0112333889999999999999876543100  


Q ss_pred             HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCce
Q 008134          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l  473 (576)
                                                                     ....++||.+++||+++++++.+.|++.+|+++
T Consensus       475 -----------------------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l  507 (718)
T PRK08043        475 -----------------------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRI  507 (718)
T ss_pred             -----------------------------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCe
Confidence                                                           001148999999999999999999999999999


Q ss_pred             ecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC--Ccccchhh
Q 008134          474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN--NPGKTSEV  551 (576)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~--~~~~t~~~  551 (576)
                      ++.||+||+++.++...+.....+++|+|+||++++|+| +++       .+..|||+++|++++.|||+  +|+.+...
T Consensus       508 ~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d-~~~-------~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~  579 (718)
T PRK08043        508 LEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLS-VPG-------IEQGGRLQLKGPNIMNGYLRVEKPGVLEVP  579 (718)
T ss_pred             ecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEec-CCC-------CCCceEEEEecCCccccccCCCCccccccc
Confidence            999999999877665544444568999999999999998 333       24569999999999999999  45532221


Q ss_pred             hc-----ccccccceeeeCCeecccCccC
Q 008134          552 YK-----VNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       552 f~-----~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +.     ...+|  ||+|||+|++|+||.
T Consensus       580 ~~~~~~~~~~~g--w~~TGDlg~~d~dG~  606 (718)
T PRK08043        580 TAENARGEMERG--WYDTGDIVRFDEQGF  606 (718)
T ss_pred             ccccccccccCC--eEecCCEEEEcCCCc
Confidence            10     02356  999999999999984

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=9.9e-51  Score=443.82  Aligned_cols=393  Identities=20%  Similarity=0.247  Sum_probs=315.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++++||++|+++.           +|+           .+||+||.++++++|++|++.|+++||+|++
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i   79 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVAF   79 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999752           333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh-----hhHHHHhhhcCCCccEEEEecCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      +++|+++++++++||+++|++++|++|..+.+++.++++++++++++++...     .+.+......++..+.++.++..
T Consensus        80 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (547)
T PRK06087         80 QLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL  159 (547)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCc
Confidence            9999999999999999999999999999999999999999999999997532     33444444455555666666543


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCC
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  315 (576)
                      ...           ....++.++........ ......++++++|+|||||||.||||+++|++++.........+ .+.
T Consensus       160 ~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~  226 (547)
T PRK06087        160 APA-----------TSSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLT  226 (547)
T ss_pred             CCC-----------cCccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCC
Confidence            211           11224555543322111 22345678999999999999999999999999998888777777 889


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       316 ~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      ++|++++.+|++|..+++. ++.+++.|+++++.+   +..+++           .++++++|+++++|..+..++....
T Consensus       227 ~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~~~~~~~~l~~~~  295 (547)
T PRK06087        227 WQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLA-----------LLEQQRCTCMLGATPFIYDLLNLLE  295 (547)
T ss_pred             CCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHH-----------HHHHcCCCEEeccHHHHHHHHhccc
Confidence            9999999999999999765 677899999999843   333333           4999999999988777666554221


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ..                                               ....+++|.+++||+++++++.+++... |+
T Consensus       296 ~~-----------------------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~  327 (547)
T PRK06087        296 KQ-----------------------------------------------PADLSALRFFLCGGTTIPKKVARECQQR-GI  327 (547)
T ss_pred             cC-----------------------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CC
Confidence            10                                               0012489999999999999999888775 99


Q ss_pred             ceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          472 PIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      ++++.||+||++..+......  .....++|+|++++.++|+| +++..   ++.|..|||+|+|+.++.||+++++.+.
T Consensus       328 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~  403 (547)
T PRK06087        328 KLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKT---LPPGCEGEEASRGPNVFMGYLDEPELTA  403 (547)
T ss_pred             cEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCC---CcCCCcceEEEecccccccccCCHHHHH
Confidence            999999999998766543322  12336789999999999999 66654   5689999999999999999999999999


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..|  +.+|  ||+|||+|++|+||.
T Consensus       404 ~~~--~~~g--~~~TGDl~~~~~~g~  425 (547)
T PRK06087        404 RAL--DEEG--WYYSGDLCRMDEAGY  425 (547)
T ss_pred             HHh--CCCC--CcCcCceEEECCCCC
Confidence            988  5567  999999999998874

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=7.6e-51  Score=441.75  Aligned_cols=402  Identities=18%  Similarity=0.198  Sum_probs=314.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++++|+++|+.+.           +++       ++++.+||.||.++++++|++|.++|+++||+|++
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-------~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i   67 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE-----------SSG-------GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL   67 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc-----------cCC-------CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999874           211       33468999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhc-CCCccEEEEecCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS-LKTIKNVIYFENDGSEK  239 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~-~~~~~~vv~~~~~~~~~  239 (576)
                      +++|+.+++++++||+++|++++|++|..+.+++.++++++++++++++.+..+.+.++... ....+.++..+..... 
T Consensus        68 ~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (517)
T PRK08008         68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA-  146 (517)
T ss_pred             EcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc-
Confidence            99999999999999999999999999999999999999999999999999877766665433 2344555555442111 


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~  319 (576)
                               .....++++.............+..++++++|+|||||||.||||+++|++++.......... .+..+++
T Consensus       147 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~  216 (517)
T PRK08008        147 ---------DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV  216 (517)
T ss_pred             ---------cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence                     112344555443322211122344678999999999999999999999999986554433334 6788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      +++.+|++|..+... ++.++..|+++++.+...        +..+++.++++++|++.++|++++.+.........   
T Consensus       217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  285 (517)
T PRK08008        217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYS--------ARAFWGQVCKYRATITECIPMMIRTLMVQPPSAND---  285 (517)
T ss_pred             EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccC--------HHHHHHHHHHcCCcEEechHHHHHHHHhCCCcccc---
Confidence            999999999766554 677899999999943211        12234449999999999999999887642111000   


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                  ...++|.+.++ .+++++....|.+.+++++++.||
T Consensus       286 --------------------------------------------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG  320 (517)
T PRK08008        286 --------------------------------------------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYG  320 (517)
T ss_pred             --------------------------------------------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeecc
Confidence                                                        00267777765 478999988888888999999999


Q ss_pred             cccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc---CcccccccCCcccchhhhcc
Q 008134          479 LTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG---FNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       479 ~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G---~~v~~GY~~~~~~t~~~f~~  554 (576)
                      +||+++.++...... ....++|+|+++++++|+| +++..   ++.|..|||+++|   +++++|||++|+.|++.|  
T Consensus       321 ~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~--  394 (517)
T PRK08008        321 MTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRP---LPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVL--  394 (517)
T ss_pred             ccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCC---CCCCCcceEEEeCCCCcchhhhHhCChHHHhhcc--
Confidence            999987665443322 2347899999999999999 66654   5689999999998   689999999999999999  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +.+|  ||+|||+|++|+||.
T Consensus       395 ~~~g--~~~TGDl~~~~~~g~  413 (517)
T PRK08008        395 EADG--WLHTGDTGYVDEEGF  413 (517)
T ss_pred             cCCC--CeeccceEEECCCCc
Confidence            5677  999999999999874

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.7e-51  Score=446.96  Aligned_cols=396  Identities=24%  Similarity=0.310  Sum_probs=315.5

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|++.++++|+++|+++.           ++.          +.+||+||.++++++|+.|.+.|+++||+|++
T Consensus        15 ~~~l~~~l~~~~~~~~~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i   73 (559)
T PRK08315         15 EQTIGQLLDRTAARYPDREALVYR-----------DQG----------LRWTYREFNEEVDALAKGLLALGIEKGDRVGI   73 (559)
T ss_pred             hccHHHHHHHHHHHCCCCeEEEEc-----------CCC----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            368999999999999999999874           222          47999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhh-----HHHHhhhcC------------
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSL------------  223 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~------------  223 (576)
                      +++|++++++++|||+++|++++|++|..+.+++..+++.+++++++++.....     .+.+....+            
T Consensus        74 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (559)
T PRK08315         74 WAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSAR  153 (559)
T ss_pred             ECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhccccccccccc
Confidence            999999999999999999999999999999999999999999999999875421     122211111            


Q ss_pred             -CCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEech
Q 008134          224 -KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH  297 (576)
Q Consensus       224 -~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh  297 (576)
                       +..+.++.++...            ......++++.......     ........++++++|+|||||||.||||.++|
T Consensus       154 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~  221 (559)
T PRK08315        154 LPELRRVIFLGDEK------------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTH  221 (559)
T ss_pred             CCCceeEEeecccC------------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeH
Confidence             2233444443321            11234555554432111     11123346788999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEE----CCcccccccchhhccCccccceeec
Q 008134          298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY----GSTLTMTDTSSKIKKGTKGDVSVLK  372 (576)
Q Consensus       298 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~----~~~~~l~~~~~~~~~~~~~~i~~~~  372 (576)
                      ++++..+......+ .+.++|+++..+|++|..+++. ++.++..|+++++    .++..+++.           +++++
T Consensus       222 ~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------l~~~~  289 (559)
T PRK08315        222 RNILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA-----------VEEER  289 (559)
T ss_pred             HHHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHcC
Confidence            99999888888888 8999999999999999998865 6788999999985    333444444           99999


Q ss_pred             ccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEE
Q 008134          373 PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMIC  452 (576)
Q Consensus       373 ~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~  452 (576)
                      +|+++++|+++..++......                                               ....++||.+++
T Consensus       290 ~t~~~~~P~~~~~~~~~~~~~-----------------------------------------------~~~~~~lr~~~~  322 (559)
T PRK08315        290 CTALYGVPTMFIAELDHPDFA-----------------------------------------------RFDLSSLRTGIM  322 (559)
T ss_pred             CeEEecchHHHHHHHhCcccC-----------------------------------------------CCCchhhheeEe
Confidence            999999999998776421100                                               001148999999


Q ss_pred             cCCCCCHHHHHHHHhhhCCc-eecccCcccccCCccccCCCC---CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCc
Q 008134          453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG  528 (576)
Q Consensus       453 gG~~l~~~~~~~~~~~~~~~-l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~G  528 (576)
                      ||++++.++.+.+.+.++.. ++|.||+||++.+++......   ....++|+|++|++++|+|+++++.   ++.|+.|
T Consensus       323 ~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~---~~~g~~G  399 (559)
T PRK08315        323 AGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET---VPRGEQG  399 (559)
T ss_pred             cCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc---CCCCCce
Confidence            99999999999998888654 999999999987665443322   2457999999999999999655654   5689999


Q ss_pred             eEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          529 EIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       529 El~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ||+|+|++++.||+++|+.+++.|  +.++  ||+|||+|++|+||.
T Consensus       400 El~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~dg~  442 (559)
T PRK08315        400 ELCTRGYSVMKGYWNDPEKTAEAI--DADG--WMHTGDLAVMDEEGY  442 (559)
T ss_pred             EEEEECchhhhhhcCChhHHhhcC--CCCC--CEEccceEEEcCCce
Confidence            999999999999999999999888  4566  999999999998874

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-50  Score=444.59  Aligned_cols=411  Identities=17%  Similarity=0.232  Sum_probs=322.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (576)
                      .|+.++|++++..+|+++|+++.            +.        ..+.+||+||.++++++|++|++ .|+++||+|++
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~------------~~--------~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~   69 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWG------------GA--------EQEQTTFAAIGARAAALAHALHDELGITGDQRVGS   69 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEc------------CC--------ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            58999999999999999999862            21        23579999999999999999997 79999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++....+.+.+....++..+.++.++.......
T Consensus        70 ~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  149 (576)
T PRK05620         70 MMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSA  149 (576)
T ss_pred             EeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccc
Confidence            99999999999999999999999999999999999999999999999999888777777666666666666654321110


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH--HhhCCCCCCCc
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSD  318 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d  318 (576)
                        ....+....+.+|+++.+.... ........++++++++|||||||.||||+++|+++.......  ...+ .+..++
T Consensus       150 --~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~  225 (576)
T PRK05620        150 --AAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGE  225 (576)
T ss_pred             --hhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCC
Confidence              0011123445678888754322 222234567899999999999999999999999987654432  2345 788899


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      ++++.+|++|.+++...+.++..|+++++.....  +     ...+++.++++++|+++++|+++..+.........   
T Consensus       226 ~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---  295 (576)
T PRK05620        226 SFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDL--S-----APTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP---  295 (576)
T ss_pred             eEEEeCChHHhhhhHHHHHHHhcCceEEecCCCC--C-----HHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc---
Confidence            9999999999999988888999999998843211  1     12234449999999999999999887653211000   


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                  ...+||.+++||+++++.+.+.|++.+|+++++.||
T Consensus       296 --------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  331 (576)
T PRK05620        296 --------------------------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWG  331 (576)
T ss_pred             --------------------------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecc
Confidence                                                        003799999999999999999999989999999999


Q ss_pred             cccccCCccccCCCCC--------CCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc--
Q 008134          479 LTETCAGSTFSEWDDP--------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT--  548 (576)
Q Consensus       479 ~TE~~~~~~~~~~~~~--------~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t--  548 (576)
                      +||++..++...+...        ...++|++.++++++|+| + +...+ .+.+..|||+|+|++++.|||++|+.|  
T Consensus       332 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~~~t~~  408 (576)
T PRK05620        332 MTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSPTEEGG  408 (576)
T ss_pred             ccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCcccccc
Confidence            9999877655433211        124789999999999998 4 44322 345678999999999999999999998  


Q ss_pred             --hhhhcc----------cccccceeeeCCeecccCccC
Q 008134          549 --SEVYKV----------NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 --~~~f~~----------~~~g~~~~~TGDlg~~d~d~e  575 (576)
                        +..|..          ..+|  ||+|||+|++|+||.
T Consensus       409 ~~~~~f~~~~~~~~~~~~~~~g--~~~TGD~~~~~~dg~  445 (576)
T PRK05620        409 GAASTFRGEDVEDANDRFTADG--WLRTGDVGSVTRDGF  445 (576)
T ss_pred             ccccccccccchhhhcccccCC--cEecCceEEEcCCce
Confidence              445431          2245  999999999999873

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.1e-51  Score=443.81  Aligned_cols=397  Identities=21%  Similarity=0.210  Sum_probs=324.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      ....++.+.++++++.+|+++|+.+            +++           .+||.||.++++++|.+|.+.|+++|++|
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V   70 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRV   70 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            4457899999999999999999986            333           69999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++......+.......+..+.++.+++... 
T Consensus        71 ~i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (542)
T PRK07786         71 LILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD-  149 (542)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc-
Confidence            9999999999999999999999999999999999999999999999999998877666555444455666666543211 


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC-CCC
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-GRS  317 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~  317 (576)
                                 ....+++++....... ........+++++++|||||||.||||+++|+++...+......+ ++ ..+
T Consensus       150 -----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~  216 (542)
T PRK07786        150 -----------DSVLGYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINS  216 (542)
T ss_pred             -----------ccccCHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCC
Confidence                       1234566665433222 122345567899999999999999999999999999888877777 65 678


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      +++++..|++|.+++..++.++..|+++++.+.... +     +..++..++++++|+++++|+++..+.........  
T Consensus       217 ~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~--  288 (542)
T PRK07786        217 DVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAF-D-----PGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR--  288 (542)
T ss_pred             ceEEEecchHHHHHHHHHHHHHHccCEEEEccCCCc-C-----HHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc--
Confidence            999999999999999888999999999998432211 1     13344559999999999999999988753211000  


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (576)
                                                                    ..++|.+++||+++++++.+++.+.+ ++++++.
T Consensus       289 ----------------------------------------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~  322 (542)
T PRK07786        289 ----------------------------------------------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAA  322 (542)
T ss_pred             ----------------------------------------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEee
Confidence                                                          02699999999999999999999888 7899999


Q ss_pred             cCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134          477 YGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~  554 (576)
                      ||+||++.+.+......  ....++|+|++++.++|+| +++..   ++.|+.|||+++|+.+++||+++++.|++.|  
T Consensus       323 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f--  396 (542)
T PRK07786        323 FGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMND---VPVGEVGEIVYRAPTLMSGYWNNPEATAEAF--  396 (542)
T ss_pred             ecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCC---CcCCCceEEEEEChhhhhhhcCCHHHHHHHh--
Confidence            99999987655432221  2347899999999999999 66654   5689999999999999999999999999999  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       .+|  ||+|||+|++++||.
T Consensus       397 -~~~--~~~TGDl~~~~~~g~  414 (542)
T PRK07786        397 -AGG--WFHSGDLVRQDEEGY  414 (542)
T ss_pred             -hCC--cccccceEEEcCCce
Confidence             467  999999999998873

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.5e-50  Score=440.19  Aligned_cols=391  Identities=19%  Similarity=0.222  Sum_probs=310.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q 008134           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAA  159 (576)
Q Consensus        80 ~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~  159 (576)
                      ...++.++|+++++++|+++|+++            +++           .+||+||.++++++|..|++.|+++|++|+
T Consensus        21 ~~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~   77 (527)
T TIGR02275        21 QDKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTAV   77 (527)
T ss_pred             cCCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            346899999999999999999985            333           799999999999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhh-----HHHHhhhcCCCccEEEEecC
Q 008134          160 ILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFEN  234 (576)
Q Consensus       160 i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~~~~~~vv~~~~  234 (576)
                      ++++|+++++++++||+++|++++++++..+.+++.++++.+++++++++.....     .........+..+.++....
T Consensus        78 i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (527)
T TIGR02275        78 VQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQ  157 (527)
T ss_pred             EECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecC
Confidence            9999999999999999999999999999999999999999999999999865421     12222223334444444322


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                      ....              .......... ..........++++++|+|||||||.||||+++|+++...+......+ .+
T Consensus       158 ~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~  221 (527)
T TIGR02275       158 TRVE--------------AELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WL  221 (527)
T ss_pred             CCCc--------------chhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CC
Confidence            1100              0011111111 111112345678999999999999999999999999999888877777 88


Q ss_pred             CCCcEEEEecChHHHHHHHH--HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      +.+|++++.+|++|.+++..  ++.++..|+++++.+   +..+.           ..++++++|++.++|+++..+...
T Consensus       222 ~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~-----------~~i~~~~~t~~~~~p~~~~~l~~~  290 (527)
T TIGR02275       222 TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-----------PLIERHKVTVTALVPPAVALWMQA  290 (527)
T ss_pred             CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHH-----------HHHHHhCCeEEEecHHHHHHHHhC
Confidence            99999999999999998764  678899999998843   33333           349999999999999999887653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      .....                                               ...+++|.+++||+++++++.+++.+.+
T Consensus       291 ~~~~~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~  323 (527)
T TIGR02275       291 ASKSR-----------------------------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVF  323 (527)
T ss_pred             ccccC-----------------------------------------------CCccceEEEEEcCCCCCHHHHHHHHHHh
Confidence            22100                                               0114899999999999999999999989


Q ss_pred             CCceecccCcccccCCccccC-CCCCCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSE-WDDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      |+++++.||+||++...+... .......++|+|+ ++..++|+| ++++.   +++|+.|||+|+|+.++.||+++|+.
T Consensus       324 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~---~~~g~~Gei~v~g~~~~~gY~~~~~~  399 (527)
T TIGR02275       324 GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNP---VAPGETGMLLTRGPYTFRGYYKAPEH  399 (527)
T ss_pred             CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCC---CCCCCceEEEecCCccchhhcCChhH
Confidence            999999999999754432211 1222346899999 588999999 66654   56899999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++.|  +.+|  ||+|||+|++|+||.
T Consensus       400 ~~~~~--~~dg--~~~TGDl~~~~~~g~  423 (527)
T TIGR02275       400 NAAAF--DAEG--FYYTGDLVRLTPEGY  423 (527)
T ss_pred             hHhhc--CcCC--CEEcCceEEEcCCcc
Confidence            99998  6677  999999999998874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-50  Score=440.54  Aligned_cols=398  Identities=25%  Similarity=0.330  Sum_probs=333.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..+++++|+++++.+|+++|+.+            .++           .+||+||.++++++|+.|.+.|+++|++|++
T Consensus         5 ~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l   61 (521)
T PRK06187          5 PLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVAV   61 (521)
T ss_pred             cCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36999999999999999999986            333           5999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+.+++++++||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.+....++..+.++.++.....  
T Consensus        62 ~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  139 (521)
T PRK06187         62 FDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA--  139 (521)
T ss_pred             ECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc--
Confidence            999999999999999999999999999999999999999999999999999888888877777777777776554321  


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                            ........+.++....... .......++++++++|||||||.||+|.++|+++.+........+ +++++|++
T Consensus       140 ------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~  211 (521)
T PRK06187        140 ------PLAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVY  211 (521)
T ss_pred             ------ccccccccHHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEE
Confidence                  0122345566665433222 223355678999999999999999999999999999888888887 89999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCch
Q 008134          321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (576)
Q Consensus       321 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~  400 (576)
                      ++.+|++|.+++...+.++..|+++++.+..   +     ...++..++++++|+++++|+++..+.......       
T Consensus       212 ~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~---~-----~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-------  276 (521)
T PRK06187        212 LVIVPMFHVHAWGLPYLALMAGAKQVIPRRF---D-----PENLLDLIETERVTFFFAVPTIWQMLLKAPRAY-------  276 (521)
T ss_pred             EEeCCchHHhhHHHHHHHHHhCCEEEecCCC---C-----HHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------
Confidence            9999999999988877799999999985542   1     123445599999999999999999887643210       


Q ss_pred             hHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcc
Q 008134          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (576)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (576)
                                                              ....+++|.+++||++++.++.++|.+.+++++++.||+|
T Consensus       277 ----------------------------------------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~t  316 (521)
T PRK06187        277 ----------------------------------------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMT  316 (521)
T ss_pred             ----------------------------------------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccC
Confidence                                                    0011489999999999999999999998899999999999


Q ss_pred             cccCCccccCCCCC------CCCccCCCCCCcEEEEeecCCCCCcCCCCC--CCCceEEEccCcccccccCCcccchhhh
Q 008134          481 ETCAGSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP--MPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (576)
Q Consensus       481 E~~~~~~~~~~~~~------~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~--g~~GEl~v~G~~v~~GY~~~~~~t~~~f  552 (576)
                      |++++.........      ...++|+|++++.++|+| +++..   ++.  |..|||+|+|+.++.||+++++.+++.|
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~  392 (521)
T PRK06187        317 ETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDE---LPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI  392 (521)
T ss_pred             ccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCC---CCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh
Confidence            99877665544333      457999999999999999 55554   446  8999999999999999999999999988


Q ss_pred             cccccccceeeeCCeecccCccC
Q 008134          553 KVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       553 ~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                         .+|  ||+|||+|++|+||.
T Consensus       393 ---~~~--~~~tGD~~~~~~~g~  410 (521)
T PRK06187        393 ---DGG--WLHTGDVGYIDEDGY  410 (521)
T ss_pred             ---hCC--ceeccceEEEcCCCC
Confidence               466  999999999999874

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-50  Score=444.98  Aligned_cols=414  Identities=21%  Similarity=0.285  Sum_probs=318.6

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      ...+++. .++.++|+++++++|+++|+.+            +++           .+||+||.++++++|++|.++|++
T Consensus        25 ~~~~~~~-~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~   80 (573)
T PRK05605         25 HDLDYGD-TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVR   80 (573)
T ss_pred             cccCCCc-CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCC
Confidence            3444443 4899999999999999999987            443           699999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEec
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|+++.....+.+..... ....++.++
T Consensus        81 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~  159 (573)
T PRK05605         81 PGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVN  159 (573)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeee
Confidence            9999999999999999999999999999999999999999999999999999999887766555443322 233444433


Q ss_pred             CCCCCC--C--------CCCC-----CCCCCceEeehHHHHHcCCCCC---CCCCCCCCCCeEEEEeecCCCCCCceEEe
Q 008134          234 NDGSEK--D--------SGVS-----GGISNWTVSSFSEVEKLGKRSP---VDPSLPSQNGVAVIMYTSGSTGLPKGVMI  295 (576)
Q Consensus       234 ~~~~~~--~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGTTG~PKgV~~  295 (576)
                      ......  .        ...+     .........+|.++........   .......++++++|+|||||||.||+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~  239 (573)
T PRK05605        160 MIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQL  239 (573)
T ss_pred             cccccccccccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEE
Confidence            211000  0        0000     0001223456666654322110   12234567899999999999999999999


Q ss_pred             chHHHHHHHHHHHhhCCCC-CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecc
Q 008134          296 THGNIVATAAAIKTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKP  373 (576)
Q Consensus       296 sh~~l~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~  373 (576)
                      +|++++..+......+..+ ..++++++.+|++|.+++.. ++.++..|+++++.+...        ...++..++++++
T Consensus       240 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~l~~~~~  311 (573)
T PRK05605        240 THRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPD--------IDLILDAMKKHPP  311 (573)
T ss_pred             ecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCC--------HHHHHHHHHHhCC
Confidence            9999988776554443222 34789999999999998765 566789999998843211        1223344999999


Q ss_pred             cEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEc
Q 008134          374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICG  453 (576)
Q Consensus       374 t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~g  453 (576)
                      |++.++|++++.+.+......                                               ...++||.+++|
T Consensus       312 t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------~~~~~lr~i~~g  344 (573)
T PRK05605        312 TWLPGVPPLYEKIAEAAEERG-----------------------------------------------VDLSGVRNAFSG  344 (573)
T ss_pred             EEEEchHHHHHHHHhCccccC-----------------------------------------------CCchhccEEEEC
Confidence            999999999998876422100                                               001379999999


Q ss_pred             CCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCC-CCCcCCCCCCCCceEE
Q 008134          454 GAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDE-GGYKTSDKPMPRGEIV  531 (576)
Q Consensus       454 G~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~-~~~~~~~~~g~~GEl~  531 (576)
                      |+++++++.++|.+.++.++++.||+||++++++..... ....+++|+|++|++++|+|+++ +..   ++.|..|||+
T Consensus       345 g~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~~g~~Gel~  421 (573)
T PRK05605        345 AMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDET---MPDGEEGELL  421 (573)
T ss_pred             CCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCcc---CCCCCeeEEE
Confidence            999999999999988899999999999998776655432 23457999999999999999554 333   5689999999


Q ss_pred             EccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          532 VGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       532 v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+|+.++.||+++++.|++.|   .+|  ||+|||+|++|+||.
T Consensus       422 v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~  460 (573)
T PRK05605        422 VRGPQVFKGYWNRPEETAKSF---LDG--WFRTGDVVVMEEDGF  460 (573)
T ss_pred             EecCchhhhhcCChhHhhhcc---cCC--CcccCCEEEEcCCCc
Confidence            999999999999999999988   457  999999999998873

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.6e-51  Score=442.44  Aligned_cols=395  Identities=21%  Similarity=0.241  Sum_probs=314.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|.++++++|+++|+.+            +++           .+||+||.++++++|..|++.|+++|++|++
T Consensus         6 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i   62 (528)
T PRK07470          6 VMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRILV   62 (528)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            36799999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++..+.+++.+++++++++.++++.+..+.+.......+....++.++...    
T Consensus        63 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  138 (528)
T PRK07470         63 HSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR----  138 (528)
T ss_pred             EcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc----
Confidence            9999999999999999999999999999999999999999999999999887666655544444555666554321    


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh-CCCCCCCcE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-IPNPGRSDV  319 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~d~  319 (576)
                                ...+++++...............++++++|+|||||||.||||+++|+++...+...... ++....+|+
T Consensus       139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~  208 (528)
T PRK07470        139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA  208 (528)
T ss_pred             ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence                      123455555432222222345567899999999999999999999999997655543332 235678899


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ++..+|++|.+++..++ .++.|++.++.....+ +     ...+++.++++++|++.++|++++.+......       
T Consensus       209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  274 (528)
T PRK07470        209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERF-D-----PAEVWALVERHRVTNLFTVPTILKMLVEHPAV-------  274 (528)
T ss_pred             EEEeccchhHHHHHHHH-HHhcCceEEEecccCc-C-----HHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------
Confidence            99999999999987654 5777887776332211 1     12244559999999999999999887653110       


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                              .+...+++|.+++||+++++...+++.+.+|.++++.||+
T Consensus       275 ----------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~  314 (528)
T PRK07470        275 ----------------------------------------DRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGL  314 (528)
T ss_pred             ----------------------------------------CCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCC
Confidence                                                    0011248999999999999999999988889999999999


Q ss_pred             ccccCCccccCCC--------CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhh
Q 008134          480 TETCAGSTFSEWD--------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV  551 (576)
Q Consensus       480 TE~~~~~~~~~~~--------~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~  551 (576)
                      ||+++.++.....        ....+++|+|++|++++|+| ++++.   ++.|+.|||+|+|+.++.||+++++.+++.
T Consensus       315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~  390 (528)
T PRK07470        315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRE---LPPGETGEICVIGPAVFAGYYNNPEANAKA  390 (528)
T ss_pred             cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccchhhcCCHHHHHhh
Confidence            9998766543221        12347899999999999999 66654   568999999999999999999999999988


Q ss_pred             hcccccccceeeeCCeecccCccC
Q 008134          552 YKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       552 f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |   .+|  ||+|||+|++|+||.
T Consensus       391 ~---~~~--~~~TGDl~~~~~~g~  409 (528)
T PRK07470        391 F---RDG--WFRTGDLGHLDARGF  409 (528)
T ss_pred             h---cCC--cEecceeEEEccCCe
Confidence            8   467  999999999998874

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-50  Score=450.86  Aligned_cols=410  Identities=13%  Similarity=0.111  Sum_probs=304.8

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ++.+.+..+  .+|+++|+++.+            .      .+..+++||+||.++++++|++|+++|+++||+|++++
T Consensus        87 n~~~~~~~~--~~~~~~Al~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~  146 (655)
T PRK03584         87 NYAENLLRH--RRDDRPAIIFRG------------E------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYL  146 (655)
T ss_pred             eHHHHhhcc--CCCCCeEEEEEC------------C------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            444444332  589999999742            1      13346899999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcCCCccEEEEec
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++..         .+.+.++...++.++.++.++
T Consensus       147 ~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  226 (655)
T PRK03584        147 PNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVP  226 (655)
T ss_pred             CCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEe
Confidence            99999999999999999999999999999999999999999999998653         233444445556666676665


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHH-HHHHHHhhCC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIP  312 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~  312 (576)
                      .......   .  ........|+++...............++++++|+|||||||.||||+++|++++. ........+ 
T Consensus       227 ~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-  300 (655)
T PRK03584        227 YLGPAAA---A--AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-  300 (655)
T ss_pred             cCCCccc---c--cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-
Confidence            4321000   0  00112345666654222222223455679999999999999999999999998764 455555666 


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  392 (576)
                      .+.++|+++++.++.|+... .++.+|+.|+++++.+.......    ...+++.++++++|++.++|++++.+......
T Consensus       301 ~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  375 (655)
T PRK03584        301 DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPD----PNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV  375 (655)
T ss_pred             CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCC----HHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC
Confidence            88999999999999987543 35678999999998543221111    23345559999999999999999887642100


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh--C
Q 008134          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM--G  470 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~--~  470 (576)
                      ..                                             .....++||.+++||+++++++.+++.+.+  +
T Consensus       376 ~~---------------------------------------------~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~  410 (655)
T PRK03584        376 PG---------------------------------------------ETHDLSALRTIGSTGSPLPPEGFDWVYEHVKAD  410 (655)
T ss_pred             cc---------------------------------------------ccCChhheEEEEEecCCCCHHHHHHHHHHhCCC
Confidence            00                                             000114899999999999999999999887  4


Q ss_pred             CceecccCcccccCCccccCC-CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC--cccccccCCccc
Q 008134          471 APIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGK  547 (576)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~--~v~~GY~~~~~~  547 (576)
                      +.+++.||+||+++......+ .....+++|.|++|++++|+| +++..   + .|+.|||+|+|+  +++.|||++|+.
T Consensus       411 ~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~---~-~g~~GeL~v~gp~p~~~~gy~~~~~~  485 (655)
T PRK03584        411 VWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRP---V-VGEVGELVCTKPFPSMPLGFWNDPDG  485 (655)
T ss_pred             ceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCC---C-CCCceEEEEccCCCCCcceeeCCCcc
Confidence            789999999998654332222 223457899999999999999 66654   3 689999999996  799999999986


Q ss_pred             ch--hhhcccccccceeeeCCeecccCccC
Q 008134          548 TS--EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~--~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++  +.+....+|  ||+|||+|++|+||-
T Consensus       486 ~~~~~~~~~~~~g--~~~TGDl~~~d~dG~  513 (655)
T PRK03584        486 SRYRDAYFDTFPG--VWRHGDWIEITEHGG  513 (655)
T ss_pred             chHHHhhhccCCC--EeecCCeEEECCCCe
Confidence            54  223122256  899999999999873

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-50  Score=437.34  Aligned_cols=370  Identities=18%  Similarity=0.190  Sum_probs=300.3

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ++.+.|+++++++||++|+.+            +++           ++||.||.++++++|++|.+.|. +|++|+|++
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~   57 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAILL   57 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEc
Confidence            678999999999999999986            333           79999999999999999999984 899999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|+++++++++||+++|++++|+++.++.+++.++++.++++++|++......+...      ...++.++.        
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~--------  123 (487)
T PRK07638         58 ENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE--------  123 (487)
T ss_pred             CCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh--------
Confidence            999999999999999999999999999999999999999999999998654443321      011221111        


Q ss_pred             CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 008134          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA  322 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~  322 (576)
                                  +.+..... .....+.....+++++|+|||||||.||||+++|++++..+......+ .+.++|+++.
T Consensus       124 ------------~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~  189 (487)
T PRK07638        124 ------------WKRMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLI  189 (487)
T ss_pred             ------------hhhhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEE
Confidence                        11111111 111111222356789999999999999999999999999888887777 8899999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          323 YLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       323 ~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ..|++|..++...+.++..|+++++.   ++..+.+.           ++++++|+++++|+++..+.....        
T Consensus       190 ~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~--------  250 (487)
T PRK07638        190 AGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDK-----------LETENISVMYTVPTMLESLYKENR--------  250 (487)
T ss_pred             eecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCcC--------
Confidence            99999999888888899999999994   34444444           999999999999999998865310        


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (576)
                                                                 ...+.+.++++|++++.++.+++.+.+ ++++++.||
T Consensus       251 -------------------------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG  287 (487)
T PRK07638        251 -------------------------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYG  287 (487)
T ss_pred             -------------------------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEec
Confidence                                                       002556678899999999999999987 789999999


Q ss_pred             cccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134          479 LTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       479 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      +||++.++...... .....++|+|+++++++|+| +++..   +++|+.|||+|+|+.++.||+++++.+.+.+   .+
T Consensus       288 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~  360 (487)
T PRK07638        288 ASELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEE---VQKGEIGTVYVKSPQFFMGYIIGGVLARELN---AD  360 (487)
T ss_pred             CCccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCC---CCCCCCeEEEEecccceeeecCCHHHHhhhc---cC
Confidence            99998776554322 23457999999999999999 66654   5789999999999999999999999887654   46


Q ss_pred             ccceeeeCCeecccCccC
Q 008134          558 CVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~e  575 (576)
                      |  ||+|||+|++|+||.
T Consensus       361 g--~~~TGDl~~~d~~g~  376 (487)
T PRK07638        361 G--WMTVRDVGYEDEEGF  376 (487)
T ss_pred             C--cEecCccEeEcCCCe
Confidence            7  999999999999874

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.1e-50  Score=436.69  Aligned_cols=396  Identities=23%  Similarity=0.315  Sum_probs=321.2

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      +++++|++.++++|+++|+.+            +++           ++||+||.++++++|++|++.|+++|++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~   57 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL   57 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            478999999999999999986            333           699999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|+++++++++||+++|++++|+++..+.+++..+++.++++++|++......+......++....++.++.......  
T Consensus        58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  135 (515)
T TIGR03098        58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE--  135 (515)
T ss_pred             CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence            999999999999999999999999999999999999999999999998776666555544555566666654322110  


Q ss_pred             CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 008134          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA  322 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~  322 (576)
                           .......|+++......  ........+++++|+|||||||.||||+++|++++..+......+ .+..+|++++
T Consensus       136 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~  207 (515)
T TIGR03098       136 -----GGGESPSWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLA  207 (515)
T ss_pred             -----CccccccHHHhhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEE
Confidence                 02233456665433221  122334568899999999999999999999999999888887777 8899999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          323 YLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       323 ~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      .+|++|.+++..++.++..|+++++.+   +..+.+           .++++++|++.++|+++..+.......      
T Consensus       208 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~~------  270 (515)
T TIGR03098       208 VLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLK-----------ALEKHGITGLAAVPPLWAQLAQLDWPE------  270 (515)
T ss_pred             ECchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHH-----------HHHHcCCceEecChHHHHHHHhcccCC------
Confidence            999999999988899999999999843   333433           499999999999999998876421000      


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (576)
                                                                ...+++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus       271 ------------------------------------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG  308 (515)
T TIGR03098       271 ------------------------------------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYG  308 (515)
T ss_pred             ------------------------------------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeec
Confidence                                                      0114899999999999999999999988 788999999


Q ss_pred             cccccCCccccCC-CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134          479 LTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       479 ~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      +||++........ ....++++|+|++|++++|+| +++..   ++.|+.|||+++|+.++.||+++++.|++.|..++.
T Consensus       309 ~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~  384 (515)
T TIGR03098       309 LTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSE---CAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPP  384 (515)
T ss_pred             cccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCC---CCCCCceEEEEcCchhhccccCCchhhhhhhhccCC
Confidence            9998765433221 123457999999999999999 66654   568899999999999999999999999988843321


Q ss_pred             -------ccceeeeCCeecccCcc
Q 008134          558 -------CVWMLCICLYVSCDKTL  574 (576)
Q Consensus       558 -------g~~~~~TGDlg~~d~d~  574 (576)
                             +.+||+|||+|++|+||
T Consensus       385 ~~~~~~~~~~~~~TGD~~~~~~~g  408 (515)
T TIGR03098       385 RPGELHLPELAVWSGDTVRRDEEG  408 (515)
T ss_pred             ccccccccccceeccceEEEcCCc
Confidence                   23599999999999886

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=5.4e-50  Score=433.65  Aligned_cols=389  Identities=23%  Similarity=0.339  Sum_probs=311.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.+++..++ .+|+++|+...           +++           .+||.||.++++++|++|+++|+++||+|+++
T Consensus         3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~   59 (504)
T PRK07514          3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ   59 (504)
T ss_pred             ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            58899999999 99999999752           333           79999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++..+.+++..+++.+++++++++....+.+....... ....++.++....    
T Consensus        60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----  134 (504)
T PRK07514         60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT----  134 (504)
T ss_pred             CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc----
Confidence            99999999999999999999999999999999999999999999999988776665543322 2222444333211    


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                                 ..+.+..... ..........++++++|+|||||||.||+|+++|++++..+......+ ++.++|+++
T Consensus       135 -----------~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l  201 (504)
T PRK07514        135 -----------GSLLEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLI  201 (504)
T ss_pred             -----------ccHHHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEE
Confidence                       0111111111 111123445688999999999999999999999999999988887777 889999999


Q ss_pred             EecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCch
Q 008134          322 AYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (576)
Q Consensus       322 ~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~  400 (576)
                      +.+|++|..++.. ++.++..|+++++.+....        ..++..+  .++|++.++|+++..++.....        
T Consensus       202 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~--------~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~--------  263 (504)
T PRK07514        202 HALPIFHTHGLFVATNVALLAGASMIFLPKFDP--------DAVLALM--PRATVMMGVPTFYTRLLQEPRL--------  263 (504)
T ss_pred             EecchHHHHHHHHHHHHHHhcCcEEEECCCCCH--------HHHHHHH--HhheeeecHHHHHHHHHcCCCC--------
Confidence            9999999998765 6788999999998532211        1122225  4799999999999887652100        


Q ss_pred             hHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcc
Q 008134          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (576)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (576)
                                                             .....+++|.+++||+++++++.++|...++.++++.||+|
T Consensus       264 ---------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  304 (504)
T PRK07514        264 ---------------------------------------TREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMT  304 (504)
T ss_pred             ---------------------------------------CcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccc
Confidence                                                   00111489999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccc
Q 008134          481 ETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVW  560 (576)
Q Consensus       481 E~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~  560 (576)
                      |++..++..........++|.|+++++++|+|+++++.   ++.|+.|||+|+|++++.||+++++.+++.|  ..+|  
T Consensus       305 E~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~---~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~--~~~~--  377 (504)
T PRK07514        305 ETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAE---LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEF--RADG--  377 (504)
T ss_pred             cccccccCCccccccCcccccCCCCcEEEEEECCCCCC---CCCCCceEEEEecCCccccccCCchhhhhhc--ccCC--
Confidence            99866543332333457899999999999999766654   5689999999999999999999999999999  4567  


Q ss_pred             eeeeCCeecccCccC
Q 008134          561 MLCICLYVSCDKTLE  575 (576)
Q Consensus       561 ~~~TGDlg~~d~d~e  575 (576)
                      ||+|||+|++|+||.
T Consensus       378 ~~~TGDl~~~~~~g~  392 (504)
T PRK07514        378 FFITGDLGKIDERGY  392 (504)
T ss_pred             CeeecceEEEcCCcc
Confidence            999999999998873

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=3.5e-50  Score=441.45  Aligned_cols=396  Identities=19%  Similarity=0.234  Sum_probs=298.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|++.++++|+++|+++            +++           ++||+||.++++++|++|.++|+++||+|+|+
T Consensus        14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~   70 (579)
T PLN03102         14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL   70 (579)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4789999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCC-----ccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKT-----IKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~-----~~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++|++++||+|.++.+++.++++.++++++|++.+..+.+.+....++.     ...++.++...
T Consensus        71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (579)
T PLN03102         71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID  150 (579)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence            9999999999999999999999999999999999999999999999998877666655433221     12344444321


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCC----CCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVD----PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  312 (576)
                      ...       .......++.++..........    .....++++++|+|||||||.||||+++|+++..........+ 
T Consensus       151 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-  222 (579)
T PLN03102        151 FPK-------RPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-  222 (579)
T ss_pred             ccc-------CCcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-
Confidence            110       0011123455555433222111    1224578999999999999999999999999765554444444 


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      .+...++++..+|++|..++...+.++..|+++++..   +..+           ++.|++++||++.++|+++..|.+.
T Consensus       223 ~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~-----------~~~i~~~~~t~~~~~P~~~~~l~~~  291 (579)
T PLN03102        223 EMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEI-----------YKNIEMHNVTHMCCVPTVFNILLKG  291 (579)
T ss_pred             CCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHH-----------HHHHHHcCCeEEEeChHHHHHHHhC
Confidence            6677889999999999999887778888999888733   3333           4449999999999999999998753


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ......                                               ..++++.+++||+++++.+.++++. +
T Consensus       292 ~~~~~~-----------------------------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~  323 (579)
T PLN03102        292 NSLDLS-----------------------------------------------PRSGPVHVLTGGSPPPAALVKKVQR-L  323 (579)
T ss_pred             cccccC-----------------------------------------------CcccceEEEECCCCCCHHHHHHHHH-c
Confidence            211000                                               0026788999999999999998875 5


Q ss_pred             CCceecccCcccccCCccccCCCC--------------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDD--------------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF  535 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~--------------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~  535 (576)
                      |+++++.||+||+++.++......              ...+..+.|+++  +.|+|.+.++.++ .+.+..|||+|+|+
T Consensus       324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~-~~~~~~GEl~v~g~  400 (579)
T PLN03102        324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVP-RDGKTMGEIVIKGS  400 (579)
T ss_pred             CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccC-CCCCCceEEEEECc
Confidence            899999999999986543321110              012333445544  4556644444322 12246899999999


Q ss_pred             cccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          536 NVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       536 ~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++++|||++|+.|++.|   ++|  ||+|||+|++|+||.
T Consensus       401 ~~~~GY~~~~~~t~~~f---~~g--w~~TGDlg~~d~dG~  435 (579)
T PLN03102        401 SIMKGYLKNPKATSEAF---KHG--WLNTGDVGVIHPDGH  435 (579)
T ss_pred             chhhhhcCChhhhHhhh---ccC--ceecCceEEEcCCCe
Confidence            99999999999999999   567  999999999999873

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4e-50  Score=446.11  Aligned_cols=402  Identities=13%  Similarity=0.108  Sum_probs=297.1

Q ss_pred             hCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHH
Q 008134           94 SHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQ  173 (576)
Q Consensus        94 ~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~l  173 (576)
                      +.++++|+++..            .      .+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        96 ~~~~~~a~~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~l  157 (652)
T TIGR01217        96 AAGTEPALLYVD------------E------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAML  157 (652)
T ss_pred             cCCCCeEEEEEC------------C------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            368899998842            1      1234679999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcCCCccEEEEecCCCCCCCCCCC
Q 008134          174 GCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIYFENDGSEKDSGVS  244 (576)
Q Consensus       174 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~  244 (576)
                      ||+++|++++|+++.++.+++.+++++++++++|+++..         .+.+.++...++.++.++.++......... .
T Consensus       158 A~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~  236 (652)
T TIGR01217       158 ATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEA-P  236 (652)
T ss_pred             HHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccc-c
Confidence            999999999999999999999999999999999998753         344555555566667777765322110000 0


Q ss_pred             CCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHH-HHHHHHhhCCCCCCCcEEEEe
Q 008134          245 GGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKTLIPNPGRSDVYLAY  323 (576)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~d~~l~~  323 (576)
                      .   ......++++...............++++++|+|||||||.||||+++|++++. ........+ ++.++|+++++
T Consensus       237 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~  312 (652)
T TIGR01217       237 K---IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYY  312 (652)
T ss_pred             c---ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEe
Confidence            0   011245677654322222222345678999999999999999999999999754 444445556 88999999999


Q ss_pred             cChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHH
Q 008134          324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN  403 (576)
Q Consensus       324 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  403 (576)
                      +|+.|+... .++.+|+.|+++++.+.......    +..+++.++++++|++..+|.+++.+.......          
T Consensus       313 ~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~----~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------  377 (652)
T TIGR01217       313 TTTGWMMWN-WLVSGLATGATLVLYDGSPGFPA----TNVLWDIAERTGATLFGTSAKYVMACRKAGVHP----------  377 (652)
T ss_pred             CCcchhhhH-HHHHHHhcCcEEEEECCCCCCCC----chHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc----------
Confidence            999997543 35578999999999543221111    233455699999999988888776654310000          


Q ss_pred             HHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC--CceecccCccc
Q 008134          404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG--APIGQAYGLTE  481 (576)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~--~~l~~~YG~TE  481 (576)
                                                         .+....++||.+++||+++++++.+++.+.++  +.+.+.||+||
T Consensus       378 -----------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE  422 (652)
T TIGR01217       378 -----------------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTD  422 (652)
T ss_pred             -----------------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHH
Confidence                                               00011148999999999999999999988775  45779999999


Q ss_pred             ccCCcccc-CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccC--cccccccCCcccch--hhhcccc
Q 008134          482 TCAGSTFS-EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF--NVTAGYFNNPGKTS--EVYKVNF  556 (576)
Q Consensus       482 ~~~~~~~~-~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~--~v~~GY~~~~~~t~--~~f~~~~  556 (576)
                      +++..... .......+++|.|.+|++++|+| ++|+.   + +|+.|||+|+||  +++.|||+||+.|+  +.+....
T Consensus       423 ~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~---~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~  497 (652)
T TIGR01217       423 ICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKP---V-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY  497 (652)
T ss_pred             HhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCC---C-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCC
Confidence            75433222 22223347899999999999999 66654   3 489999999996  68999999999764  3332223


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||-
T Consensus       498 ~g--~~~tGDlg~~d~dG~  514 (652)
T TIGR01217       498 PG--VWRHGDWITLTPRGG  514 (652)
T ss_pred             CC--EEEcCCcEEECCCCc
Confidence            56  999999999999984

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.1e-50  Score=440.07  Aligned_cols=409  Identities=22%  Similarity=0.294  Sum_probs=307.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEE
Q 008134           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA  158 (576)
Q Consensus        80 ~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V  158 (576)
                      ...++.++|+++++++|+++|++.            +++           .+||.||.++++++|++|.+. |+++||+|
T Consensus        22 ~~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V   78 (562)
T PRK12492         22 AYKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDRI   78 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            346899999999999999999975            333           799999999999999999985 99999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCC-C
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG-S  237 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~-~  237 (576)
                      +++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++....+.+....... ....++...... .
T Consensus        79 ~i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  157 (562)
T PRK12492         79 AVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLL  157 (562)
T ss_pred             EEECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhcc
Confidence            99999999999999999999999999999999999999999999999999876655544433221 111111111000 0


Q ss_pred             CCC---------CCCCCC-C--CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH
Q 008134          238 EKD---------SGVSGG-I--SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA  305 (576)
Q Consensus       238 ~~~---------~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~  305 (576)
                      ...         ...... +  ......+++++..........+.....+++++|+|||||||.||||+++|+++...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~  237 (562)
T PRK12492        158 PAAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANML  237 (562)
T ss_pred             ccccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHH
Confidence            000         000000 0  0012245666654433222223455678999999999999999999999999988776


Q ss_pred             HHHhhCCC--------CCC-CcEEEEecChHHHHHHHH-HHHHHHhCceEEECC-cccccccchhhccCccccceeeccc
Q 008134          306 AIKTLIPN--------PGR-SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS-TLTMTDTSSKIKKGTKGDVSVLKPT  374 (576)
Q Consensus       306 ~~~~~~~~--------~~~-~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~-~~~l~~~~~~~~~~~~~~i~~~~~t  374 (576)
                      .....+..        +.. ++++++.+|++|.+++.. .+..+..|+..++.. +..        ...++..++++++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~~~i~~~~~t  309 (562)
T PRK12492        238 QVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRD--------IPGFIKELGKWRFS  309 (562)
T ss_pred             HHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcC--------HHHHHHHHHHhCCc
Confidence            65544311        223 357789999999999765 455677788766532 211        11233349999999


Q ss_pred             EEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcC
Q 008134          375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG  454 (576)
Q Consensus       375 ~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG  454 (576)
                      ++.++|+++..+.......                                               +...+++|.+++||
T Consensus       310 ~~~~~p~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~~~~gG  342 (562)
T PRK12492        310 ALLGLNTLFVALMDHPGFK-----------------------------------------------DLDFSALKLTNSGG  342 (562)
T ss_pred             eeeCcHHHHHHHHhCcCcc-----------------------------------------------cccccceeEEEecc
Confidence            9999999998876531100                                               00114899999999


Q ss_pred             CCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc
Q 008134          455 APLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG  533 (576)
Q Consensus       455 ~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~  533 (576)
                      +++++++.+.|++.+++++++.||+||++.+++...... ...+++|+|+++++++|+| +++..   +++|+.|||+|+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~---~~~g~~Gel~v~  418 (562)
T PRK12492        343 TALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNE---LPLGERGELCIK  418 (562)
T ss_pred             ccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCC---CCCCCceEEEEe
Confidence            999999999999888999999999999987765443322 2347899999999999999 56654   568999999999


Q ss_pred             cCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          534 GFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       534 G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+.++.|||++|+.|++.|  +.+|  ||+|||+|++|+||.
T Consensus       419 g~~~~~gY~~~~~~t~~~~--~~~g--~~~TGD~g~~~~~G~  456 (562)
T PRK12492        419 GPQVMKGYWQQPEATAEAL--DAEG--WFKTGDIAVIDPDGF  456 (562)
T ss_pred             CCccccccccCchhhhhcc--cCCC--ceecCcEEEECCCCe
Confidence            9999999999999999988  4466  999999999999873

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-51  Score=395.68  Aligned_cols=390  Identities=20%  Similarity=0.250  Sum_probs=331.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      ...+++.+++..+|+++||++|++.             |.          +.+||+||+++++++|.+|+++|+++||+|
T Consensus        25 W~d~~l~d~L~~~A~~~pdriAv~d-------------~~----------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~v   81 (542)
T COG1021          25 WQDRTLTDILTDHAARYPDRIAVID-------------GE----------RRLSYAELDQRADRLAAGLRRLGIKPGDTV   81 (542)
T ss_pred             ccCCcHHHHHHHHHhhcCCceEEec-------------Cc----------ccccHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            3448999999999999999999984             32          369999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh-----hhHHHHhhhcCCCccEEEEec
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      .+.++|..+++++++|++|+|++.|.--|.....+|.+..+.+.++.+|.+...     .+...+.....++++++++.+
T Consensus        82 lvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~g  161 (542)
T COG1021          82 LVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAG  161 (542)
T ss_pred             EEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEcc
Confidence            999999999999999999999999999999999999999999999999987643     355666777888999999875


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~  313 (576)
                      +....              ...+..+........+..+.+++++|+..-+.||||.||-+..+|.....++....+.+ +
T Consensus       162 e~~~~--------------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~  226 (542)
T COG1021         162 EAEHP--------------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-G  226 (542)
T ss_pred             CCCCc--------------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-C
Confidence            43211              11222222222333334667788999999999999999999999999999999999999 9


Q ss_pred             CCCCcEEEEecChHHHHHHHH--HHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      ++..+++|+.+|..|.+-+..  .+..+++|+++|+   .++...+..           |+++++|+...+|.+...+++
T Consensus       227 ~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlq  295 (542)
T COG1021         227 FDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQ  295 (542)
T ss_pred             cCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHH
Confidence            999999999999999888765  7888999999999   566666666           999999999999999998887


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      +.+..                                               ...++|||.+-+||+.+++++.++....
T Consensus       296 a~e~~-----------------------------------------------~~~LsSLrllQVGGarl~~~~Arrv~~~  328 (542)
T COG1021         296 AAEWE-----------------------------------------------RADLSSLRLLQVGGARLSATLARRVPAV  328 (542)
T ss_pred             hhhcc-----------------------------------------------cCCchheeEEeecCcccCHHHHhhchhh
Confidence            65431                                               1123599999999999999999999999


Q ss_pred             hCCceecccCcccccCCccccCCCCCC---CCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCC
Q 008134          469 MGAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN  544 (576)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~~~~---~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~  544 (576)
                      +||.+-+.+||.|.-  ..+...++..   ..+-|+|+ |.-+++|+| ++|+.   +++|++|+|.++||..++|||+.
T Consensus       329 lgC~LQQVFGMAEGL--vnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~p---v~pGE~G~LltRGPYTirGYyra  402 (542)
T COG1021         329 LGCQLQQVFGMAEGL--VNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNP---VAPGEVGELLTRGPYTIRGYYRA  402 (542)
T ss_pred             hCchHHHHhhhhhhh--hcccccCCchHheeecCCCcCCCcceeEEec-CCCCC---CCCCCcceeeecCCeeeeeeccC
Confidence            999999999999953  3344433332   26889998 677999999 77765   66999999999999999999999


Q ss_pred             cccchhhhcccccccceeeeCCeecccCcc
Q 008134          545 PGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       545 ~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      |+.++++|  +.+|  +|||||++++|+||
T Consensus       403 p~HNa~aF--~a~G--FYrsGD~V~~~~dG  428 (542)
T COG1021         403 PEHNARAF--DADG--FYRSGDLVRRDPDG  428 (542)
T ss_pred             chhhhhcc--CcCC--ceecCceeEecCCc
Confidence            99999999  8999  99999999999997

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-50  Score=435.44  Aligned_cols=397  Identities=20%  Similarity=0.217  Sum_probs=319.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|.++++++|+++|+.+            +++           .+||+||.++++++|..|.+.|+++||+|++
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l   66 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA   66 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++..+.+++..+++.+++++++++.+....+.+..+.... ..+........   
T Consensus        67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---  142 (523)
T PRK08316         67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLGG---  142 (523)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeecccc---
Confidence            99999999999999999999999999999999999999999999999999887776655433321 11111111000   


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                           .........++++....... ........+++++|+|||||||.||+|.++|+++++........+ .+.++|++
T Consensus       143 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  215 (523)
T PRK08316        143 -----REAPGGWLDFADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIP  215 (523)
T ss_pred             -----cccccchhhHHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceE
Confidence                 00112334555554432221 123456778999999999999999999999999999888887777 89999999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ++.+|++|..++.. ++.++..|+++++.+...        ...++..++++++|++.++|+++..+..+....      
T Consensus       216 ~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------  281 (523)
T PRK08316        216 LHALPLYHCAQLDVFLGPYLYVGATNVILDAPD--------PELILRTIEAERITSFFAPPTVWISLLRHPDFD------  281 (523)
T ss_pred             EEccCCchhhhHHHHHHHHHhcCceEEEecCCC--------HHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc------
Confidence            99999999998865 455688999999843211        122344499999999999999998876532110      


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (576)
                                                               +...+++|.+++||++++.++.+.+++.+ ++++++.||
T Consensus       282 -----------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG  320 (523)
T PRK08316        282 -----------------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG  320 (523)
T ss_pred             -----------------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence                                                     01114899999999999999999999887 789999999


Q ss_pred             cccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          479 LTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       479 ~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      +||++.+++......  ...+++|+|+++++++|+| +++..   ++.|..|||+++|+.++.||+++++.+++.|   .
T Consensus       321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~---~  393 (523)
T PRK08316        321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGND---VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF---R  393 (523)
T ss_pred             ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCC---CCCCCcceEEEECCchhhhhcCCHHHHHHHh---h
Confidence            999988766544322  2347999999999999999 55654   5689999999999999999999999999998   4


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||.
T Consensus       394 ~~--~~~TGDl~~~~~~g~  410 (523)
T PRK08316        394 GG--WFHSGDLGVMDEEGY  410 (523)
T ss_pred             CC--CeeccceEEEcCCce
Confidence            67  999999999999874

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-50  Score=437.40  Aligned_cols=403  Identities=19%  Similarity=0.225  Sum_probs=309.1

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      +.+...++.++|+++++++|+++|++.            +++           .+||+||.++++++|++|.+.|+++||
T Consensus         5 ~~~~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~   61 (540)
T PRK06164          5 AAPRADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGD   61 (540)
T ss_pred             cccCCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            345557999999999999999999974            322           699999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhh-cCCCccEEE
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSS-SLKTIKNVI  230 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~-~~~~~~~vv  230 (576)
                      +|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++|++.+..     +.+..... ..+.++.++
T Consensus        62 ~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (540)
T PRK06164         62 RVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIA  141 (540)
T ss_pred             EEEEEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEE
Confidence            999999999999999999999999999999999999999999999999999987642     22222211 123445555


Q ss_pred             EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCC---CCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH
Q 008134          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPV---DPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  307 (576)
                      .++......    ..    .....+.++.........   ......++++++++|||||||.||||+++|+++.+.+...
T Consensus       142 ~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~  213 (540)
T PRK06164        142 VVDDAADAT----PA----PAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAI  213 (540)
T ss_pred             EeccCcccC----CC----CCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHH
Confidence            554211100    00    000001111100000000   0123346889999999999999999999999999999888


Q ss_pred             HhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHH
Q 008134          308 KTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (576)
Q Consensus       308 ~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~  387 (576)
                      ...+ ++..++++++++|++|.+++..++.++..|+++++.+...        ...++..++++++|+++++|+++..+.
T Consensus       214 ~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~l~~~~~t~~~~~p~~l~~l~  284 (540)
T PRK06164        214 ARAY-GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFD--------AARTARALRRHRVTHTFGNDEMLRRIL  284 (540)
T ss_pred             HHhc-CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCC--------HHHHHHHHHHhCCeeecCCHHHHHHHH
Confidence            8888 8899999999999999999988899999999998843211        112334499999999999999999887


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcC-CCCCHHHHHHHH
Q 008134          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGG-APLSADSQRFIN  466 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG-~~l~~~~~~~~~  466 (576)
                      .....                                                ....+++|.+.++| .+...++.+++.
T Consensus       285 ~~~~~------------------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~  316 (540)
T PRK06164        285 DTAGE------------------------------------------------RADFPSARLFGFASFAPALGELAALAR  316 (540)
T ss_pred             Hhhcc------------------------------------------------cCCCcceeeeeeccCCcchHHHHHHHh
Confidence            64100                                                00114788877665 566666777776


Q ss_pred             hhhCCceecccCcccccCCccccCCCCC---CCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccccc
Q 008134          467 ICMGAPIGQAYGLTETCAGSTFSEWDDP---SVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF  542 (576)
Q Consensus       467 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~  542 (576)
                      .. ++++++.||+||++.+++.......   ...++|.|+ +++.++|+|+++++.   ++.|+.|||||+|++++.|||
T Consensus       317 ~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~---~~~g~~Gel~v~g~~~~~gY~  392 (540)
T PRK06164        317 AR-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL---LPDGESGEIEIRAPSLMRGYL  392 (540)
T ss_pred             hc-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC---CCCCCeeEEEEeccccccccc
Confidence            65 8999999999999877665443221   235678876 899999999766654   568999999999999999999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|+.|++.|  ..+|  ||+|||+|++|+||.
T Consensus       393 ~~~~~t~~~~--~~~~--~~~TGDl~~~~~~g~  421 (540)
T PRK06164        393 DNPDATARAL--TDDG--YFRTGDLGYTRGDGQ  421 (540)
T ss_pred             CCchhhhhcc--cCCC--ceecCCeEEEcCCce
Confidence            9999999999  5677  999999999998873

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-49  Score=444.14  Aligned_cols=409  Identities=15%  Similarity=0.110  Sum_probs=300.5

Q ss_pred             HHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 008134           85 AALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET  164 (576)
Q Consensus        85 ~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~  164 (576)
                      ..+|+++++++|+++|+++.+          ++.     ..+..+++||+||.++++++|++|+++|+++||+|+++++|
T Consensus       178 ~~~l~~~~~~~pd~~Ai~~~~----------e~~-----~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn  242 (728)
T PLN03052        178 ECCLTPKPSKTDDSIAIIWRD----------EGS-----DDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM  242 (728)
T ss_pred             HHHHHHHhccCCCCeEEEEEC----------CCC-----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence            456777667799999999853          110     01134679999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh------hHHHHhhhcCCCccEEEEecCCCCC
Q 008134          165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL------KKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       165 s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      ++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...      +....+.....  ..++++......
T Consensus       243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~  320 (728)
T PLN03052        243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKS  320 (728)
T ss_pred             CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCc
Confidence            9999999999999999999999999999999999999999999987532      22222221111  123333321110


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCC----CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKR----SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                      .  . ...  .....+|+++......    ....+....++++++|+|||||||+||||+++|++++.........+ ++
T Consensus       321 ~--~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l  394 (728)
T PLN03052        321 V--R-VKL--REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DI  394 (728)
T ss_pred             c--c-ccc--ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CC
Confidence            0  0 000  0112457776543211    11112223568999999999999999999999999887766666566 88


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      +++|++++++|++|+.+.+.++.+|..|+++++.+.....       ..+++.++++++|++.++|++++.+.+....  
T Consensus       395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~-------~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~--  465 (728)
T PLN03052        395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLG-------RGFAKFVQDAKVTMLGTVPSIVKTWKNTNCM--  465 (728)
T ss_pred             CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCC-------ChHHHHHHHHCCCEEEECHHHHHHHHhcCCc--
Confidence            9999999999999999988888999999999995422111       1244559999999999999999987653100  


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC-Cce
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-API  473 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~-~~l  473 (576)
                                                                   ++...++||.+++||++++++...++...++ .++
T Consensus       466 ---------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i  500 (728)
T PLN03052        466 ---------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPI  500 (728)
T ss_pred             ---------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHhcCCCCe
Confidence                                                         0011148999999999999999888877665 579


Q ss_pred             ecccCcccccCCccccCC-CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCC--CceEEEccC--cccccccCCcccc
Q 008134          474 GQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP--RGEIVVGGF--NVTAGYFNNPGKT  548 (576)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~--~GEl~v~G~--~v~~GY~~~~~~t  548 (576)
                      +|.||+||+++......+ .....+++|+|++|++++|+| ++|+.   ++.|+  .|||+++++  +...+|+++. .+
T Consensus       501 ~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~---v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~  575 (728)
T PLN03052        501 IEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNP---YPDDAPCTGELALFPLMFGASSTLLNAD-HY  575 (728)
T ss_pred             EeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCC---CCCCCCceEEEEEeCCCCCCCccccCch-hh
Confidence            999999999765433222 223457899999999999999 77765   45674  699999875  3346788764 44


Q ss_pred             hhhhcccc--cccceeeeCCeecccCccC
Q 008134          549 SEVYKVNF--HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~--~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..-|...+  +|.+||+|||+|++|+||-
T Consensus       576 ~~yf~~~p~~~g~~~~~tGDl~~~d~dG~  604 (728)
T PLN03052        576 KVYFKGMPVFNGKILRRHGDIFERTSGGY  604 (728)
T ss_pred             hhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence            44452222  4667999999999999873

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-49  Score=434.81  Aligned_cols=402  Identities=18%  Similarity=0.195  Sum_probs=312.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+..++++|++.++.++.          +         ++++.+||.||.++++++|++|.+.|+++||+|+++
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~   70 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRV----------E---------GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL   70 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeec----------c---------CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            478999999999999998887531          1         223479999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+..+.+.++....+.++.++.+.......  
T Consensus        71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  148 (539)
T PRK07008         71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLP--  148 (539)
T ss_pred             cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccc--
Confidence            999999999999999999999999999999999999999999999999887777666655556666666554322111  


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH--HHHhhCCCCCCCcE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA--AIKTLIPNPGRSDV  319 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~--~~~~~~~~~~~~d~  319 (576)
                         .  ..+.+.+++++....... .......++++++++|||||||.||||+++|++++....  .....+ ++.++|+
T Consensus       149 ---~--~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~  221 (539)
T PRK07008        149 ---A--GSTPLLCYETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDA  221 (539)
T ss_pred             ---c--CCcccccHHHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCce
Confidence               0  123356677765433221 112345678899999999999999999999999875432  223355 7888999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      +++..|++|..++...+.++..|+++++.++.  .+     ...+++.++++++|++.++|+++..+........     
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~--~~-----~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-----  289 (539)
T PRK07008        222 VLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPD--LD-----GKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG-----  289 (539)
T ss_pred             EEecCchHHhhhHHHHHHHHhcCceEEEecCC--cC-----HHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-----
Confidence            99999999988876678889999999984331  11     1223344999999999999999998875322100     


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                                ...++||.+++||+++++++.+.|++.+++++++.||+
T Consensus       290 ------------------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~  327 (539)
T PRK07008        290 ------------------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGM  327 (539)
T ss_pred             ------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccc
Confidence                                                      01148999999999999999999998899999999999


Q ss_pred             ccccCCccccCCCC-----------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134          480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (576)
Q Consensus       480 TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t  548 (576)
                      ||++..++......           ....++|+|+||++++|+| +++..++ ...+..|||+++|++++.||+++++  
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~~--  403 (539)
T PRK07008        328 TEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRGDA--  403 (539)
T ss_pred             ccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCChh--
Confidence            99987654332110           1135899999999999999 5655432 1223579999999999999999983  


Q ss_pred             hhhhcccccccceeeeCCeecccCccC
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       +.|   .+|  ||+|||+|++|+||.
T Consensus       404 -~~~---~~g--~~~TGD~~~~~~dg~  424 (539)
T PRK07008        404 -SPL---VDG--WFPTGDVATIDADGF  424 (539)
T ss_pred             -hhh---cCC--CcccCceEEEcCCCc
Confidence             344   256  999999999999873

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-49  Score=435.92  Aligned_cols=394  Identities=23%  Similarity=0.299  Sum_probs=310.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++++|++.++++|+++|+++.+          ++           +.+||+||.++++++|++|.+.|+++|++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~   76 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW   76 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            689999999999999999998742          22           379999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhc-------------C
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSS-------------L  223 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~-------------~  223 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++....     ..+.+....             .
T Consensus        77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (558)
T PRK12583         77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL  156 (558)
T ss_pred             CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence            9999999999999999999999999999999999999999999999976432     222222111             1


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCC-----CCCCCCCCCCCeEEEEeecCCCCCCceEEechH
Q 008134          224 KTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRS-----PVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHG  298 (576)
Q Consensus       224 ~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~  298 (576)
                      +....++.++....            .....++++.......     ........++++++++|||||||.||||+++|+
T Consensus       157 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~  224 (558)
T PRK12583        157 PELRGVVSLAPAPP------------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHH  224 (558)
T ss_pred             CcceEEEEecCCCC------------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHH
Confidence            22233333322111            1123344443322111     011133457889999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC----CcccccccchhhccCccccceeecc
Q 008134          299 NIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKP  373 (576)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~----~~~~l~~~~~~~~~~~~~~i~~~~~  373 (576)
                      ++.+.+......+ ++..+|++++..|++|.++... ++.++..|+++++.    ++..+.           ..++++++
T Consensus       225 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~-----------~~i~~~~~  292 (558)
T PRK12583        225 NILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATL-----------QAVEEERC  292 (558)
T ss_pred             HHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHH-----------HHHHHcCC
Confidence            9999888888777 8999999999999999999766 67789999998863    233333           34999999


Q ss_pred             cEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEc
Q 008134          374 TLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICG  453 (576)
Q Consensus       374 t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~g  453 (576)
                      |+++++|+++..+.......                                               ....+++|.+++|
T Consensus       293 t~l~~~P~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~i~~~  325 (558)
T PRK12583        293 TALYGVPTMFIAELDHPQRG-----------------------------------------------NFDLSSLRTGIMA  325 (558)
T ss_pred             eEEeccHHHHHHHHcccccc-----------------------------------------------CCCchhheEEEec
Confidence            99999999987765421100                                               0011489999999


Q ss_pred             CCCCCHHHHHHHHhhhC-CceecccCcccccCCccccCCC---CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCce
Q 008134          454 GAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWD---DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGE  529 (576)
Q Consensus       454 G~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GE  529 (576)
                      |+++++++.+++.+.++ ..+++.||+||++.+++.....   .....++|+|++++.++|+|+ ++..   ++.|+.||
T Consensus       326 G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~---~~~g~~Ge  401 (558)
T PRK12583        326 GAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDP-DGAT---VPRGEIGE  401 (558)
T ss_pred             CCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECC-CCCC---CCCCCeeE
Confidence            99999999999888875 4799999999998876654322   224579999999999999994 4544   66899999


Q ss_pred             EEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          530 IVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       530 l~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+|+|+.++.||+++++.+.+.|  +.+|  ||+|||+|++|+||.
T Consensus       402 l~v~g~~~~~gy~~~~~~~~~~~--~~~~--~~~TGDl~~~~~dg~  443 (558)
T PRK12583        402 LCTRGYSVMKGYWNNPEATAESI--DEDG--WMHTGDLATMDEQGY  443 (558)
T ss_pred             EEEEeCccchhhcCChHHHHhhc--CCCC--CeeccceEEECCCcc
Confidence            99999999999999999998888  4566  999999999998873

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.3e-49  Score=431.11  Aligned_cols=392  Identities=20%  Similarity=0.239  Sum_probs=316.8

Q ss_pred             CCHHHHHHHH-HHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           82 STMAALFEQS-CKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~-a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      +...++++++ ++.+||++|++.            +++           .+||.||.++++++|++|.+.|+++|++|++
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l   60 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVLL   60 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3566777776 677999999975            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+.+++++++||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++..+.++..+....   
T Consensus        61 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  137 (508)
T TIGR02262        61 LMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA---  137 (508)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc---
Confidence            99999999999999999999999999999999999999999999999998887777776666666777766654211   


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH-HHhhCCCCCCCcE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA-IKTLIPNPGRSDV  319 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~~d~  319 (576)
                                ....+.++..... ....+....++++++|+|||||||.||||+++|+++...+.. ....+ +++++|+
T Consensus       138 ----------~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~  205 (508)
T TIGR02262       138 ----------GEVQLAELLATES-EQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDV  205 (508)
T ss_pred             ----------ccccHHHHhhcCC-CccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCE
Confidence                      1123444433211 122233456789999999999999999999999999987766 34455 8899999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          320 YLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      +++.+|++|+.++.. ++.++..|+++++.+...  +     ...++..|++++||++.++|+++..+.......     
T Consensus       206 ~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~--~-----~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~-----  273 (508)
T TIGR02262       206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMGERP--T-----PDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP-----  273 (508)
T ss_pred             EEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCC--C-----HHHHHHHHHHHCCcEEecchHHHHHHhcCcccc-----
Confidence            999999999999865 667899999998843211  1     122344499999999999999988765421100     


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                .....++|.+++||+++++++.+.|.+.+++++++.||
T Consensus       274 ------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG  311 (508)
T TIGR02262       274 ------------------------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIG  311 (508)
T ss_pred             ------------------------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCcc
Confidence                                                      00114899999999999999999999999999999999


Q ss_pred             cccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccc
Q 008134          479 LTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHC  558 (576)
Q Consensus       479 ~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g  558 (576)
                      +||++.+.+.........+++|+|++|++++|+| +++..   +++|..|||+|+|++++.||+++|+.+++.|   .+|
T Consensus       312 ~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~---~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~---~~~  384 (508)
T TIGR02262       312 STEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQD---VAAGEPGELLISGPSSATMYWNNRAKTRDTF---QGE  384 (508)
T ss_pred             ccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCccccccCCCHHHhHhhh---hcC
Confidence            9999876654443344557899999999999999 77654   5689999999999999999999999999988   456


Q ss_pred             cceeeeCCeecccCcc
Q 008134          559 VWMLCICLYVSCDKTL  574 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~  574 (576)
                        ||+|||++++++||
T Consensus       385 --~~~TGD~~~~~~~g  398 (508)
T TIGR02262       385 --WTRSGDKYVRNDDG  398 (508)
T ss_pred             --ceeccceEEEcCCc
Confidence              99999999998886

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1e-49  Score=434.34  Aligned_cols=389  Identities=18%  Similarity=0.223  Sum_probs=308.1

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++  |+++|+++            +++           .+||+||.++++++|++|.+.|+++|++|++
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v   78 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTALV   78 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            4689999999887  99999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEecCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      +++|+++++++++||+++|++++++.+..+..++..+++++++++++++....     .....+....+..+.++..+..
T Consensus        79 ~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  158 (536)
T PRK10946         79 QLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD  158 (536)
T ss_pred             ECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC
Confidence            99999999999999999999888777778888999999999999999986531     1122222333444444443221


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCC
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  315 (576)
                      .               ...+.++...... ........++++++|+|||||||.||||+++|+++...+......+ .+.
T Consensus       159 ~---------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~  221 (536)
T PRK10946        159 G---------------EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFT  221 (536)
T ss_pred             C---------------CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCC
Confidence            1               1223333332211 1122345678999999999999999999999999999998888887 899


Q ss_pred             CCcEEEEecChHHHHHHH--HHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          316 RSDVYLAYLPLAHVLELA--AESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       316 ~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                      .+|++++.+|++|.+++.  ..+.++..|+++++.   ++..+.+           .++++++|++.++|+++..+....
T Consensus       222 ~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~-----------~l~~~~~t~~~~~p~~~~~l~~~~  290 (536)
T PRK10946        222 PQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFP-----------LIEKHQVNVTALVPPAVSLWLQAI  290 (536)
T ss_pred             CCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHH-----------HHHHhCCcEEEeChHHHHHHHhhh
Confidence            999999999999988765  367889999999883   3333333           399999999999999999887643


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                      ......                                             ...+++|.+++||+++++++.+.|.+.+|
T Consensus       291 ~~~~~~---------------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g  325 (536)
T PRK10946        291 AEGGSR---------------------------------------------AQLASLKLLQVGGARLSETLARRIPAELG  325 (536)
T ss_pred             cccCcc---------------------------------------------ccccceeEEEECCCCCCHHHHHHHHHhcC
Confidence            111000                                             01148999999999999999999998899


Q ss_pred             CceecccCcccccCCccccCC-CCCCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134          471 APIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (576)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t  548 (576)
                      +++++.||+||+++..+.... ......++|+|+ |++.++|+| ++++.   ++.|+.|||+|+|+.++.||+++++.|
T Consensus       326 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~GY~~~~~~t  401 (536)
T PRK10946        326 CQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNP---LPQGEVGRLMTRGPYTFRGYYKSPQHN  401 (536)
T ss_pred             CeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCC---CCCCCccEEEEecCccchhhcCCcccc
Confidence            999999999997644332211 122347899999 899999999 66654   568999999999999999999999999


Q ss_pred             hhhhcccccccceeeeCCeecccCccC
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++.|  +.+|  ||+|||+|++|+||.
T Consensus       402 ~~~~--~~d~--~~~TGDl~~~d~~G~  424 (536)
T PRK10946        402 ASAF--DANG--FYCSGDLVSIDPDGY  424 (536)
T ss_pred             hhhc--ccCC--ceecCceEEECCCCc
Confidence            9999  5567  999999999999874

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-49  Score=429.33  Aligned_cols=383  Identities=20%  Similarity=0.230  Sum_probs=304.3

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      +.++.++|+++++++|+++|+++            +++           .+||.||.++++++|.+|.+.|+++|++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i   57 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVAL   57 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            35788999999999999999987            444           7999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.+.......       ....+.++....   
T Consensus        58 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~---  127 (497)
T PRK06145         58 LMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQ---  127 (497)
T ss_pred             ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCccc---
Confidence            9999999999999999999999999999999999999999999999998765433210       112222222100   


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                                  ..+..+.. ............++++++++|||||||.||||+++|+++..........+ ++..++++
T Consensus       128 ------------~~~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~  193 (497)
T PRK06145        128 ------------ADSRRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERL  193 (497)
T ss_pred             ------------chhHHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEE
Confidence                        00111111 10111112345678999999999999999999999999987776666667 88999999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      +...|++|.+++.. .+.++..|+++++.+...        ...+++.++++++|++.++|+++..++......      
T Consensus       194 ~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~------  259 (497)
T PRK06145        194 LVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFD--------PEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD------  259 (497)
T ss_pred             EEecCchhHhHHHHHHHHHHhccCEEEECCcCC--------HHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc------
Confidence            99999999988865 567889999998833211        122334499999999999999998886532100      


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (576)
                                                               ....+++|.+++||++++.++.+.|.+.+ +.++++.||
T Consensus       260 -----------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG  298 (497)
T PRK06145        260 -----------------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYG  298 (497)
T ss_pred             -----------------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeec
Confidence                                                     00013799999999999999999998887 688999999


Q ss_pred             cccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       479 ~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      +||+++.++.....  ....+++|+|+++++++|+| +++..   ++.|..|||+++|++++.||+++++.|++.|   .
T Consensus       299 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~---~  371 (497)
T PRK06145        299 LTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRW---LPPNMKGEICMRGPKVTKGYWKDPEKTAEAF---Y  371 (497)
T ss_pred             CcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCC---CCCCCceEEEEECcchhhhhcCChHHHHHHH---h
Confidence            99998865543322  12347899999999999999 55544   5689999999999999999999999999999   3


Q ss_pred             cccceeeeCCeecccCcc
Q 008134          557 HCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~  574 (576)
                      +|  ||+|||+|++|+||
T Consensus       372 ~~--~~~TGDl~~~~~~g  387 (497)
T PRK06145        372 GD--WFRSGDVGYLDEEG  387 (497)
T ss_pred             CC--CeeccceEEEcCCC
Confidence            56  99999999999887

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=8.4e-49  Score=451.35  Aligned_cols=426  Identities=19%  Similarity=0.252  Sum_probs=338.7

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (576)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (576)
                      .+...|+.++|++.++++|+++|+..+.          +        .++++++||+|+.++++++|++|+++|+++||+
T Consensus       423 ~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDr  484 (1452)
T PTZ00297        423 LAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRPGDV  484 (1452)
T ss_pred             cccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            4556799999999999999999996421          0        133468999999999999999999999999999


Q ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~  237 (576)
                      |+|+++|+++|+++.+||+++|+++||+++  +.+++.+++++++++++|++.+..+.+.+...  +.+++||+++....
T Consensus       485 VaIls~N~~Ewvia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~  560 (1452)
T PTZ00297        485 IGVDCEASRNIVILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYD  560 (1452)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcc
Confidence            999999999999999999999999999985  46789999999999999999887776665432  36889999864211


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCC-CCCCCCCCeEEEEe---ecCCCCCCceEEechHHHHHHHHHHHhhC--
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMY---TSGSTGLPKGVMITHGNIVATAAAIKTLI--  311 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~---TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--  311 (576)
                      ..... .....++.+++|+++...+.....+ .....++|++.|+|   ||||||.||||++||+|+++.+.......  
T Consensus       561 ~~~~~-~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~  639 (1452)
T PTZ00297        561 EDDHA-VARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL  639 (1452)
T ss_pred             ccccc-ccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc
Confidence            00000 0001134578899999876432221 23447899999996   99999999999999999999988875432  


Q ss_pred             CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       312 ~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +...++|++++++|++|+++....+.+++.|++++++++..+++.           |+++|||+++++|++|+.+.....
T Consensus       640 ~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~i~  708 (1452)
T PTZ00297        640 PSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQLS  708 (1452)
T ss_pred             cCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHHHH
Confidence            245678999999999999997777888999999988887777777           999999999999999999999888


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCC--CCCHHHHHHHHhhh
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGA--PLSADSQRFINICM  469 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~--~l~~~~~~~~~~~~  469 (576)
                      ++....+.+.+++|+++++.+.+.+..     .....+++|+++|+++|+.+|+++|.+++||+  +++..+..      
T Consensus       709 ~~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------  777 (1452)
T PTZ00297        709 RANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------  777 (1452)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------
Confidence            888888899999999999988765542     23456699999999999999999999999984  55543333      


Q ss_pred             CCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      ++++..+||+||+.   +.+.+.+..  ..|+|+||+++||.|.++.+.     ....|||+++       |++||++|+
T Consensus       778 ~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~-----~~~~GEIlvr-------~~kdpe~T~  840 (1452)
T PTZ00297        778 HISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSD-----GAGIGQLVLA-------KKGEPRRTL  840 (1452)
T ss_pred             CceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccC-----CCCCCeEEEE-------ECCChHHHH
Confidence            57788899999953   334444333  349999999999998544332     1246999995       458999999


Q ss_pred             hhhcccccccceeeeCCeeccc
Q 008134          550 EVYKVNFHCVWMLCICLYVSCD  571 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d  571 (576)
                      +.+    +|  |+..|.|--.|
T Consensus       841 e~~----~g--W~~dG~L~Iid  856 (1452)
T PTZ00297        841 PIA----AQ--WKRDRTLRLLG  856 (1452)
T ss_pred             Hhh----Cc--CccCCeEEEEe
Confidence            865    57  99888876543

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-49  Score=438.67  Aligned_cols=397  Identities=20%  Similarity=0.216  Sum_probs=303.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      ....++.++|.++++++|+++|+++            +++           .+||+||.++++++|.+|.+.|+++|++|
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V   90 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLF------------EDQ-----------SISYAELNARANRYAHWAAARGVGKGDVV   90 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence            3347999999999999999999986            333           69999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..........++..+.....
T Consensus        91 ~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (600)
T PRK08279         91 ALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD  170 (600)
T ss_pred             EEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc
Confidence            99999999999999999999999999999999999999999999999999998877776655444333333333221100


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCC----CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSP----VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                  ....+.++.......+    .......++++++|+|||||||.||||+++|+++++.+.+....+ .+
T Consensus       171 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l  237 (600)
T PRK08279        171 ------------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RL  237 (600)
T ss_pred             ------------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CC
Confidence                        0122333332221111    112344678999999999999999999999999999999888887 99


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                      .++|++++.+|++|.+++.. ++.++..|+++++.   ++..+.+.           +.++++|++.++|++++.+....
T Consensus       238 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~l~~~l~~~~  306 (600)
T PRK08279        238 TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDD-----------VRRYRATAFQYIGELCRYLLNQP  306 (600)
T ss_pred             CCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHH-----------HHHhcceEEeehHHHHHHHHhCC
Confidence            99999999999999999886 44568888888883   33334444           89999999999999998876531


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                      .....                                               ...++|.+  +|+++++++.+.|...++
T Consensus       307 ~~~~~-----------------------------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~  337 (600)
T PRK08279        307 PKPTD-----------------------------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFG  337 (600)
T ss_pred             CCccc-----------------------------------------------cCcceeEE--ecCCCCHHHHHHHHHHhC
Confidence            11000                                               01367754  477899999999999887


Q ss_pred             C-ceecccCcccccCCccccCCCCCCCCccCCCCC----CcEEEEeecCCC-------CCcCCCCCCCCceEE--EccCc
Q 008134          471 A-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP----CCYIKLVSWDEG-------GYKTSDKPMPRGEIV--VGGFN  536 (576)
Q Consensus       471 ~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~----~~~~~ivd~~~~-------~~~~~~~~g~~GEl~--v~G~~  536 (576)
                      . .++|.||+||++...+..   .....++|++.+    +..+..++.+.+       .....+++|+.|||+  |+|++
T Consensus       338 ~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~  414 (600)
T PRK08279        338 IPRILEFYAASEGNVGFINV---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRG  414 (600)
T ss_pred             cceeeeeecccccceeeccc---CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcc
Confidence            5 599999999987543321   234467887666    333322221111       112236789999998  78999


Q ss_pred             ccccccCCcccchhhhccc--ccccceeeeCCeecccCccC
Q 008134          537 VTAGYFNNPGKTSEVYKVN--FHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       537 v~~GY~~~~~~t~~~f~~~--~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++.|| ++++.|++.|+.+  .++.+||+|||+|++|+||.
T Consensus       415 ~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~  454 (600)
T PRK08279        415 PFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGH  454 (600)
T ss_pred             ccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCcc
Confidence            99999 9999999998654  24456999999999999985

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-49  Score=431.62  Aligned_cols=408  Identities=21%  Similarity=0.260  Sum_probs=310.2

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|.++++++|+++|+++            ++.           .+||+||.++++++|++|.+.|+++||+|++
T Consensus        22 ~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i   78 (557)
T PRK07059         22 YPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVAI   78 (557)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            46899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|++|..+.+++.+++++++++++|++....+.+....... ..+.++..........
T Consensus        79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (557)
T PRK07059         79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGF  157 (557)
T ss_pred             ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEecccccccc
Confidence            999999999999999999999999999999999999999999999999887766655543322 2333333221100000


Q ss_pred             -------------CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH
Q 008134          241 -------------SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (576)
Q Consensus       241 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  307 (576)
                                   .....+ .......++++...............++++++|+|||||||.||||+++|++++..+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~  236 (557)
T PRK07059        158 KGHIVNFVVRRVKKMVPAW-SLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQM  236 (557)
T ss_pred             ccccccccccccccccccc-CCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHH
Confidence                         000000 011223455555443333333345678999999999999999999999999998766543


Q ss_pred             HhhCC---CC---CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecH
Q 008134          308 KTLIP---NP---GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP  380 (576)
Q Consensus       308 ~~~~~---~~---~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P  380 (576)
                      ...+.   ..   .....+++.+|++|.+++.. .+.++..|++.++.....  +     ...++..++++++|.+.++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-----~~~~~~~i~~~~vt~~~~~p  309 (557)
T PRK07059        237 EAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPR--D-----IPGFIKELKKYQVHIFPAVN  309 (557)
T ss_pred             hhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCc--C-----HHHHHHHHHHhCCeeeecCH
Confidence            32220   11   12457788999999988654 567788888876632110  1     11233448999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH
Q 008134          381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD  460 (576)
Q Consensus       381 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~  460 (576)
                      +++..+.......                                               +...+++|.++.||+++++.
T Consensus       310 ~~~~~l~~~~~~~-----------------------------------------------~~~~~~l~~~~~gg~~~~~~  342 (557)
T PRK07059        310 TLYNALLNNPDFD-----------------------------------------------KLDFSKLIVANGGGMAVQRP  342 (557)
T ss_pred             HHHHHHHcCcCcC-----------------------------------------------cCCchhheEEEeccccCCHH
Confidence            9999886531100                                               00113789999999999999


Q ss_pred             HHHHHHhhhCCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccc
Q 008134          461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA  539 (576)
Q Consensus       461 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~  539 (576)
                      +.+.|.+.+++++++.||+||++.+++...... ....++|+|++|++++|+| ++++.   ++.|..|||+|+|+.++.
T Consensus       343 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~---~~~g~~Gel~v~g~~~~~  418 (557)
T PRK07059        343 VAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGND---LPLGEPGEICIRGPQVMA  418 (557)
T ss_pred             HHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCC---CCCCCceEEEEeCCccch
Confidence            999999989999999999999988766544322 2347999999999999999 66654   568999999999999999


Q ss_pred             cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          540 GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       540 GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ||+++++.|++.|  ..+|  ||+|||+|++|+||.
T Consensus       419 gY~~~~~~~~~~~--~~~g--~~~TGDl~~~~~~g~  450 (557)
T PRK07059        419 GYWNRPDETAKVM--TADG--FFRTGDVGVMDERGY  450 (557)
T ss_pred             hhhcCHHHHhhhc--ccCC--ceecCcEEEEcCCCc
Confidence            9999999999888  5677  999999999998863

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=4e-50  Score=436.42  Aligned_cols=376  Identities=21%  Similarity=0.271  Sum_probs=278.8

Q ss_pred             HHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q 008134           84 MAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAE  163 (576)
Q Consensus        84 l~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~  163 (576)
                      +.+.|+++++++|+++|+++.           ++        +.++++||+||.++++++|++|.++  ++||+|+|+++
T Consensus         4 ~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~   62 (525)
T PRK05851          4 LAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGE   62 (525)
T ss_pred             HHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcC
Confidence            788999999999999999863           11        2346899999999999999999998  89999999999


Q ss_pred             CcHHHHHHHHHHHhCCCEEEEccCC--------CCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCC
Q 008134          164 TCVEWFIAFQGCFRQSITVVTIYSS--------LGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       164 ~s~~~~va~lA~~~~G~~~vpl~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      |++++++++|||+++|++++ ++|.        ...+++.+++++++++++|++....+.+......       +.+.. 
T Consensus        63 ~~~e~~~~~la~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~-  133 (525)
T PRK05851         63 PTVELVAAIQGAWLAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD-  133 (525)
T ss_pred             CCHHHHHHHHHHHHcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc-
Confidence            99999999999999999865 4432        2335566789999999999988765544332111       00000 


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCC
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  315 (576)
                                         +......  ..........++++++|+|||||||.||||+++|+++++.+......+ ++.
T Consensus       134 -------------------~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~  191 (525)
T PRK05851        134 -------------------LATAAHT--NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLD  191 (525)
T ss_pred             -------------------ccccccc--cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCC
Confidence                               0000000  000011234678999999999999999999999999999998888888 888


Q ss_pred             -CCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          316 -RSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       316 -~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                       ++|++++.+|++|++++..++.+++.|+++++.+...+...    +..+++.+.++++|++..+|.++..+...... .
T Consensus       192 ~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~-~  266 (525)
T PRK05851        192 AATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSAS----PFRWLSWLSDSRATLTAAPNFAYNLIGKYARR-V  266 (525)
T ss_pred             CCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHC----HHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc-c
Confidence             89999999999999999888899999999998543222111    11233448999999875555444443221100 0


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh---hCC
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---MGA  471 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~---~~~  471 (576)
                      .                                             ....++||.+++||+++++++.++|.+.   +|.
T Consensus       267 ~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~  301 (525)
T PRK05851        267 S---------------------------------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGF  301 (525)
T ss_pred             c---------------------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCC
Confidence            0                                             0011379999999999999998888764   354


Q ss_pred             ---ceecccCcccccCCccccCCC---------------CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc
Q 008134          472 ---PIGQAYGLTETCAGSTFSEWD---------------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG  533 (576)
Q Consensus       472 ---~l~~~YG~TE~~~~~~~~~~~---------------~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~  533 (576)
                         +++|.||+||++..++...+.               ....+++|+|++|++++|+|.+.+..   ++.|+.|||+|+
T Consensus       302 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~---~~~g~~GEl~v~  378 (525)
T PRK05851        302 DAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAG---VAGREIGEIEIR  378 (525)
T ss_pred             ChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCcc---CCCCCeEEEEEe
Confidence               499999999998765543221               11236899999999999999433222   568999999999


Q ss_pred             cCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          534 GFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       534 G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      |++++.|||++|+.+       .+|  ||+|||+|++| ||
T Consensus       379 g~~~~~GY~~~~~~~-------~~~--~~~TGDl~~~~-~G  409 (525)
T PRK05851        379 GASMMSGYLGQAPID-------PDD--WFPTGDLGYLV-DG  409 (525)
T ss_pred             cCchhhccccCCccC-------CCC--ceeccceEEEE-CC
Confidence            999999999998643       356  99999999987 45

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.9e-48  Score=425.18  Aligned_cols=404  Identities=23%  Similarity=0.297  Sum_probs=305.9

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++.+|+++|+.+            +++           .+||.||.++++++|++|.++|+++||+|++
T Consensus        20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i   76 (541)
T TIGR03205        20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL   76 (541)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            333           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh--hhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ--LKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++|+++++++++||+++|++++|++|..+.+++.+++++++++++|+++..  .+.+.+.... .....+++++.....
T Consensus        77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  155 (541)
T TIGR03205        77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG  155 (541)
T ss_pred             ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence            9999999999999999999999999999999999999999999999997632  1222222111 112344444332110


Q ss_pred             CCCC-CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-----C
Q 008134          239 KDSG-VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-----P  312 (576)
Q Consensus       239 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~  312 (576)
                      .... ...........+++++...... ........++++++++|||||||.||||+++|+++.+..... ..+     .
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~  233 (541)
T TIGR03205       156 KVGTPQAPIPADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRA  233 (541)
T ss_pred             cccccccccCCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-Hhhcccccc
Confidence            0000 0001112234566666543211 111234567899999999999999999999999988655432 111     0


Q ss_pred             CCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      .....+++++..|++|.+++.. ++.++..|+++++.   ++..+.           ..|.++++|++.++|+++..+..
T Consensus       234 ~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~-----------~~i~~~~~t~~~~~P~~~~~l~~  302 (541)
T TIGR03205       234 TRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVF-----------RDIEEKRATVFPGVPTMWIALAN  302 (541)
T ss_pred             cCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHH-----------HHHHHcCCeEeechHHHHHHHHh
Confidence            2234578999999999988766 67789999988874   333333           34999999999999999988764


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      ....                                               ++...+++|.+++||+++++++.+++++.
T Consensus       303 ~~~~-----------------------------------------------~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       303 DPSL-----------------------------------------------EKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             Cccc-----------------------------------------------cccCccccceEEEccccCCHHHHHHHHHH
Confidence            2100                                               00011379999999999999999999888


Q ss_pred             hCCceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          469 MGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      +++++++.||+||++..++..... ...++++|+|++++.++|++.++.+.  .++.|+.|||+|+|++++.||+++|+.
T Consensus       336 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~  413 (541)
T TIGR03205       336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTK--VLPPGEVGELRIRGPNVTRGYWNRPEE  413 (541)
T ss_pred             hCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCc--cCCCCCeeEEEEecCCccccccCChhh
Confidence            899999999999998776654332 22457899999999999876443322  256899999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++.|   ++|  ||+|||+|++++||.
T Consensus       414 ~~~~~---~~~--~~~TGD~~~~~~~g~  436 (541)
T TIGR03205       414 SAEAF---VGD--RFLTGDIGYMDTDGY  436 (541)
T ss_pred             hHhhh---ccC--CcccCceEEEcCCce
Confidence            99998   466  999999999998873

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-49  Score=427.19  Aligned_cols=390  Identities=20%  Similarity=0.184  Sum_probs=310.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .|+.++|.++++++|+++|+++            +++           .+||.||.++++++|..|.+.|+++|++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~   68 (524)
T PRK06188         12 ATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVALL   68 (524)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            5899999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch-hhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK-QLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      ++|+++++++++||+++|++++|++|..+.+++..+++.++++++++++. ....+.......+...+++.++.....  
T Consensus        69 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  146 (524)
T PRK06188         69 SLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDG--  146 (524)
T ss_pred             CCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccch--
Confidence            99999999999999999999999999999999999999999999999876 444444433444444555544332110  


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                                  ..+.+....... ........++++++|+|||||||.||+|+++|+++.+.+......+ .+..+|++
T Consensus       147 ------------~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~~  212 (524)
T PRK06188        147 ------------VDLLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPRF  212 (524)
T ss_pred             ------------hhHHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcEE
Confidence                        001111110001 1111223456799999999999999999999999999998888888 88999999


Q ss_pred             EEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCch
Q 008134          321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGL  400 (576)
Q Consensus       321 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~  400 (576)
                      ++.+|++|..++. ++.+++.|+++++.+...        +..++..++++++|+++++|+++..++......       
T Consensus       213 l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~-------  276 (524)
T PRK06188        213 LMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFD--------PAEVLRAIEEQRITATFLVPTMIYALLDHPDLR-------  276 (524)
T ss_pred             EEecCchhhhhHH-HHHHHHcCCEEEEcCCCC--------HHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc-------
Confidence            9999999988875 567799999999944311        122334499999999999999998887632110       


Q ss_pred             hHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcc
Q 008134          401 TKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLT  480 (576)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~T  480 (576)
                                                              +...+++|.+++||++++++..+.+.+.++..+++.||+|
T Consensus       277 ----------------------------------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~t  316 (524)
T PRK06188        277 ----------------------------------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQT  316 (524)
T ss_pred             ----------------------------------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCcc
Confidence                                                    0011489999999999999988888888899999999999


Q ss_pred             cccCCccccCCCC------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134          481 ETCAGSTFSEWDD------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       481 E~~~~~~~~~~~~------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~  554 (576)
                      |++..++......      ....++|+|+++++++|+| +++..   ++.|..|||+|+|+.++.||+++++.+++.|  
T Consensus       317 E~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--  390 (524)
T PRK06188        317 EAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGRE---VAQGEVGEICVRGPLVMDGYWNRPEETAEAF--  390 (524)
T ss_pred             ccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCC---CCCCCeeEEEEECcchhhhhcCChHHhhhhh--
Confidence            9976655433221      2347899999999999999 55554   5689999999999999999999999999888  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       .+|  ||+|||+|++|+||.
T Consensus       391 -~~g--~~~TGDl~~~~~~g~  408 (524)
T PRK06188        391 -RDG--WLHTGDVAREDEDGF  408 (524)
T ss_pred             -cCC--ceeecceEEEcCCcc
Confidence             467  999999999998874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-48  Score=426.68  Aligned_cols=402  Identities=18%  Similarity=0.221  Sum_probs=308.9

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++++|+++++++||+++++...          +         +..+++||+||.++++++|++|++.|+++||+|+++
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~~~----------~---------~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~   70 (542)
T PRK06018         10 LLCHRIIDHAARIHGNREVVTRSV----------E---------GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATI   70 (542)
T ss_pred             CCHHHHHHHHHHhCCCceEEEeec----------c---------CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            599999999999999999997421          1         223579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+..+.+.+.....+..+.++.+.......  
T Consensus        71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  148 (542)
T PRK06018         71 AWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMP--  148 (542)
T ss_pred             cCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccccc--
Confidence            999999999999999999999999999999999999999999999999988877777665566666666554321110  


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHH-HHH-HHHHhhCCCCCCCcE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV-ATA-AAIKTLIPNPGRSDV  319 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~-~~~-~~~~~~~~~~~~~d~  319 (576)
                         . ........+.++...... ........++++++|+|||||||.||||+++|++.+ ... ......+ ++..+|+
T Consensus       149 ---~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~  222 (542)
T PRK06018        149 ---Q-TTLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADT  222 (542)
T ss_pred             ---c-cCccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCE
Confidence               0 001123455665543221 111234466889999999999999999999999743 222 2333455 7889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ++...|++|.+++...+.++..|+++++....  .+.     ..+++.++++++|++.++|+++..+........     
T Consensus       223 ~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~--~~~-----~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----  290 (542)
T PRK06018        223 MLPVVPLFHANSWGIAFSAPSMGTKLVMPGAK--LDG-----ASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-----  290 (542)
T ss_pred             EEEecCHHHHhhhHHHHhhhhcCceEEccCcC--CCH-----HHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----
Confidence            99999999999988777889999999874211  111     123344999999999999999998875322100     


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                                ...++||.+++||+++++++.++|++ +++++++.||+
T Consensus       291 ------------------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~  327 (542)
T PRK06018        291 ------------------------------------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGM  327 (542)
T ss_pred             ------------------------------------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecc
Confidence                                                      01148999999999999999999998 89999999999


Q ss_pred             ccccCCccccCCCC-----------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134          480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (576)
Q Consensus       480 TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t  548 (576)
                      ||++.+.+......           ....++|+|.++++++|+| +++..++ .+.+..|||+++|++++.|||++   +
T Consensus       328 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy~~~---~  402 (542)
T PRK06018        328 TEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAYYRV---D  402 (542)
T ss_pred             cccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhhhcC---c
Confidence            99987655432111           0125799999999999999 5665543 22236899999999999999983   2


Q ss_pred             hhhhcccccccceeeeCCeecccCcc
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      .+.+  +.+|  ||+|||+|++|+||
T Consensus       403 ~~~~--~~~~--~~~TGDl~~~~~~g  424 (542)
T PRK06018        403 GEIL--DDDG--FFDTGDVATIDAYG  424 (542)
T ss_pred             ccEe--cCCc--EEEcCCEEEEcCCc
Confidence            3333  4566  99999999999886

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.6e-48  Score=427.84  Aligned_cols=401  Identities=17%  Similarity=0.174  Sum_probs=301.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++.+|+..++.+|+++|+.+            ++.           .+||+||.++++++|.+|.+.|+++||+|+++
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~   76 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI   76 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            4689999999999999999985            332           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCC-------CccEEEEecC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK-------TIKNVIYFEN  234 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~-------~~~~vv~~~~  234 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++...+.+.+....+.       ....++.++.
T Consensus        77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (567)
T PLN02479         77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD  156 (567)
T ss_pred             CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence            999999999999999999999999999999999999999999999999887665554432211       1123344332


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                      ....... .. .........+.+++...............++.++|+|||||||.||||+++|+++..........+ .+
T Consensus       157 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~  233 (567)
T PLN02479        157 PTCDPKS-LQ-YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GM  233 (567)
T ss_pred             CcCCccc-cc-cccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CC
Confidence            1110000 00 000112345666654322111111223345678899999999999999999999887666666666 78


Q ss_pred             CCCcEEEEecChHHHHHHHHHHH-HHHhCceEEE--CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAAESI-MLCAGCAIGY--GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~~~~-~l~~G~~~~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +.++++++.+|++|..++...+. .+..|.++++  +++..+.+.           ++++++|++.++|++++.+..+..
T Consensus       234 ~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~  302 (567)
T PLN02479        234 NEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSA-----------IANYGVTHFCAAPVVLNTIVNAPK  302 (567)
T ss_pred             CCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhhhh
Confidence            89999999999999998766443 4566666655  334444444           999999999999999998876422


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ....                                              ...+++|.++++|+++++.+.++|++. +.
T Consensus       303 ~~~~----------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~  335 (567)
T PLN02479        303 SETI----------------------------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GF  335 (567)
T ss_pred             hccc----------------------------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CC
Confidence            1000                                              001488999999999999999998876 89


Q ss_pred             ceecccCcccccCCccccCC--------CC---CCCCccCCCCCCcE-EEEeecCCCCCcCCCCCC--CCceEEEccCcc
Q 008134          472 PIGQAYGLTETCAGSTFSEW--------DD---PSVGRVGPPVPCCY-IKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV  537 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~--------~~---~~~~~vG~p~~~~~-~~ivd~~~~~~~~~~~~g--~~GEl~v~G~~v  537 (576)
                      ++++.||+||+++.++....        ..   ....++|.+.++++ ++|+|++++..+   +.+  +.|||+++|+++
T Consensus       336 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~---~~~g~~~GEl~v~g~~~  412 (567)
T PLN02479        336 RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPV---PADGKTMGEIVMRGNMV  412 (567)
T ss_pred             ceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCccc---CCCCCCceEEEEeccch
Confidence            99999999998654432210        00   01146788888886 899986555543   332  679999999999


Q ss_pred             cccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          538 TAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       538 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      +.|||++|+.|++.|   .+|  ||+|||+|++|+||
T Consensus       413 ~~GY~~~~~~t~~~~---~~g--~~~TGDl~~~~~~g  444 (567)
T PLN02479        413 MKGYLKNPKANEEAF---ANG--WFHSGDLGVKHPDG  444 (567)
T ss_pred             hhhhhcCcccccchh---cCC--ceecceeEEEcCCc
Confidence            999999999999999   467  99999999999987

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-49  Score=423.27  Aligned_cols=365  Identities=22%  Similarity=0.234  Sum_probs=288.7

Q ss_pred             HHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHH
Q 008134           89 EQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEW  168 (576)
Q Consensus        89 ~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~  168 (576)
                      +.+++.+||++|+.+..          ++           +.+||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus         2 ~~~a~~~p~~~a~~~~~----------~~-----------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~   60 (488)
T PRK09088          2 AFHARLQPQRLAAVDLA----------LG-----------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL   60 (488)
T ss_pred             chhhhhCCCceEEEecC----------CC-----------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            46788999999987521          23           3799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCC
Q 008134          169 FIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGIS  248 (576)
Q Consensus       169 ~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~  248 (576)
                      +++++||+++|++++|+++..+.+++.+++++++++++|+++......                                
T Consensus        61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------------------  108 (488)
T PRK09088         61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------------------------------  108 (488)
T ss_pred             HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------------------------------
Confidence            999999999999999999999999999999999999999986543210                                


Q ss_pred             CceEeehHHHHHcCCC-CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          249 NWTVSSFSEVEKLGKR-SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       249 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                       .....++++...... .........++++++++|||||||.||+|+++|++++..+....... .+..+|++++.+|++
T Consensus       109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~  186 (488)
T PRK09088        109 -TDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMF  186 (488)
T ss_pred             -ccccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchH
Confidence             000111222111111 11112234568899999999999999999999999998887777766 788999999999999


Q ss_pred             HHHHHHH-HHHHHHhCceEEECCc---ccccccchhhccCccccce--eecccEEEecHHHHHHHHHHHHHHHHhcCchh
Q 008134          328 HVLELAA-ESIMLCAGCAIGYGST---LTMTDTSSKIKKGTKGDVS--VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT  401 (576)
Q Consensus       328 ~~~~~~~-~~~~l~~G~~~~~~~~---~~l~~~~~~~~~~~~~~i~--~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  401 (576)
                      |.+++.. +..++..|+++++.+.   ...+..           +.  ++++|+++++|++++.+..+....        
T Consensus       187 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~~~P~~~~~l~~~~~~~--------  247 (488)
T PRK09088        187 HIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR-----------LGDPALGITHYFCVPQMAQAFRAQPGFD--------  247 (488)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHhhccCCcEEeeHHHHHHHHHhCcCcC--------
Confidence            9999876 5667888999988432   222222           43  589999999999998876421100        


Q ss_pred             HHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCccc
Q 008134          402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE  481 (576)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE  481 (576)
                                                             ....++||.+++||++++....+++... |+++++.||+||
T Consensus       248 ---------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE  287 (488)
T PRK09088        248 ---------------------------------------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSE  287 (488)
T ss_pred             ---------------------------------------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccc
Confidence                                                   0001389999999999999988877765 899999999999


Q ss_pred             ccCCccccCC---CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccc
Q 008134          482 TCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHC  558 (576)
Q Consensus       482 ~~~~~~~~~~---~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g  558 (576)
                      ++++......   ...+.+++|+|+++++++|+| +++..   ++.|..|||+|+|++++.||+++++.|++.|  +.+|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~--~~~g  361 (488)
T PRK09088        288 AGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGND---CPAGVPGELLLRGPNLSPGYWRRPQATARAF--TGDG  361 (488)
T ss_pred             cccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCC---CcCCCceEEEEECCccchhhcCChhhhhhhh--cCCC
Confidence            9875443211   122457899999999999999 55554   5689999999999999999999999999888  4567


Q ss_pred             cceeeeCCeecccCccC
Q 008134          559 VWMLCICLYVSCDKTLE  575 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~e  575 (576)
                        ||+|||+|++|+||.
T Consensus       362 --~~~TGDl~~~~~~g~  376 (488)
T PRK09088        362 --WFRTGDIARRDADGF  376 (488)
T ss_pred             --CeeecceEEEcCCCc
Confidence              999999999998873

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=5.7e-49  Score=425.45  Aligned_cols=381  Identities=17%  Similarity=0.171  Sum_probs=304.2

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ++.+.|++.++.+|+++|+..            .++           .+||+||.++++++|..|.+.|+++|++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~   57 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG   57 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            467899999999999999975            333           699999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|+.+++++++||+++|++++|+++.++.+++.++++..+++.++++.+.......       .. ++.++         
T Consensus        58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~---------  120 (502)
T TIGR01734        58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLS---------  120 (502)
T ss_pred             CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEch---------
Confidence            99999999999999999999999999999999999999999999998765322211       00 11111         


Q ss_pred             CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 008134          243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA  322 (576)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~  322 (576)
                                 ...++..... .........+++.++|+|||||||.||+|+++|+++...+.+....+ .+..+++++.
T Consensus       121 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~  187 (502)
T TIGR01734       121 -----------ALEQAETSGG-PVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLN  187 (502)
T ss_pred             -----------HhhhhhhhcC-CccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEe
Confidence                       1111111111 11111334678999999999999999999999999999988888887 8899999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhH
Q 008134          323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTK  402 (576)
Q Consensus       323 ~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~  402 (576)
                      ..|++|..++..++.++..|+++++.+.....+.     ..++..+.++++|.+.++|+++..++.+....         
T Consensus       188 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~---------  253 (502)
T TIGR01734       188 QAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNF-----KLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN---------  253 (502)
T ss_pred             ecCceechhHHHHHHHHHCCCEEEEcCHHHhcCH-----HHHHHHHHHcCCeEEEEChhHHHHHHhccccc---------
Confidence            9999999999888999999999998554332222     22344489999999999999988765421100         


Q ss_pred             HHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCccc
Q 008134          403 NLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTE  481 (576)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE  481 (576)
                                                            +...+++|.++++|++++.++.+.+.+.+ ++.+++.||+||
T Consensus       254 --------------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE  295 (502)
T TIGR01734       254 --------------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE  295 (502)
T ss_pred             --------------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence                                                  00114899999999999999999988877 789999999999


Q ss_pred             ccCCccccCC-----CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          482 TCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       482 ~~~~~~~~~~-----~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      +++..+....     ......++|+|++|++++|+| +++..   +++|+.|||+|+|+.++.||+++|+.|.+.|. +.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~~  370 (502)
T TIGR01734       296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEP---LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFF-SH  370 (502)
T ss_pred             ceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCC---CCCCCeeEEEEccccccccccCCcccchHhhe-eC
Confidence            8764443221     122336899999999999999 55543   56899999999999999999999999999883 34


Q ss_pred             cccceeeeCCeecccCc
Q 008134          557 HCVWMLCICLYVSCDKT  573 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d  573 (576)
                      +|.+||+|||+|++|++
T Consensus       371 ~~~~~~~TGDlg~~~~~  387 (502)
T TIGR01734       371 EGQPAYRTGDAGTITDG  387 (502)
T ss_pred             CCcEEEECCCEEEEECC
Confidence            56679999999999865

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-48  Score=426.61  Aligned_cols=376  Identities=19%  Similarity=0.231  Sum_probs=291.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH-NVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i  160 (576)
                      .++.++|.+++  .|+++|+++            ++.           .+||+||.++++++|.+|.++|+ ++||+|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i   57 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV   57 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            57889998764  799999986            333           69999999999999999999999 89999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++.+..+.+.+..  .+..+. +.++..     
T Consensus        58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~-i~~~~~-----  129 (540)
T PRK13388         58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRV-LDVDTP-----  129 (540)
T ss_pred             ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceE-EEccch-----
Confidence            999999999999999999999999999999999999999999999999987766554431  222222 222210     


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVY  320 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~  320 (576)
                                   .+.++...... ..+.....++++++|+|||||||.||||+++|+++..........+ ++.++|++
T Consensus       130 -------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~  194 (540)
T PRK13388        130 -------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVC  194 (540)
T ss_pred             -------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEE
Confidence                         12222221111 1111235679999999999999999999999999998888888888 89999999


Q ss_pred             EEecChHHHHHHHHH-HHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          321 LAYLPLAHVLELAAE-SIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       321 l~~~pl~~~~~~~~~-~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      ++.+|++|..++... +.+|..|+++++.+   +..+++           .++++++|++..+|+.+..+.......   
T Consensus       195 l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~-----------~i~~~~vt~~~~~p~~l~~l~~~~~~~---  260 (540)
T PRK13388        195 YVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLD-----------DVRRYGATYFNYVGKPLAYILATPERP---  260 (540)
T ss_pred             EEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHH-----------HHHHhCCeEEEehHHHHHHHHhCCCCc---
Confidence            999999999988764 45799999998843   333444           499999999999999988776421100   


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecc
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA  476 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~  476 (576)
                        .                                          ....++|.+ + |++++++..+.|.+.++++++|.
T Consensus       261 --~------------------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~  294 (540)
T PRK13388        261 --D------------------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDG  294 (540)
T ss_pred             --c------------------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecc
Confidence              0                                          000256643 3 56678888888888889999999


Q ss_pred             cCcccccCCccccCCCCCCCCccCCCCCCcEEE-----------EeecCCCCCcCCCCCCCCceEEEc-cCcccccccCC
Q 008134          477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIK-----------LVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNN  544 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~-----------ivd~~~~~~~~~~~~g~~GEl~v~-G~~v~~GY~~~  544 (576)
                      ||+||++.+++..  .....+++|+|++|++++           ++| ++|+..  .+.+..|||+++ |++++.||+++
T Consensus       295 YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~  369 (540)
T PRK13388        295 YGSSEGAVIVVRE--PGTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNN  369 (540)
T ss_pred             cccccccceeecC--CCCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCC
Confidence            9999998766533  223457999999997653           223 222221  134678999998 99999999999


Q ss_pred             cccchhhhcccccccceeeeCCeecccCccC
Q 008134          545 PGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       545 ~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+.|++.|   .+|  ||+|||+|++|+||.
T Consensus       370 ~~~t~~~~---~~g--~~~TGD~~~~~~dg~  395 (540)
T PRK13388        370 PEATAERM---RHG--MYWSGDLAYRDADGW  395 (540)
T ss_pred             hHHHHHHh---hcC--ceeccceEEEcCCCc
Confidence            99999998   467  999999999998873

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2e-48  Score=426.79  Aligned_cols=405  Identities=22%  Similarity=0.281  Sum_probs=310.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i  160 (576)
                      .++.++|+++++.+|+++|+++            +++           .+||+||.++++++|+.|+ +.|+++||+|++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i   81 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVAL   81 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            5899999999999999999986            443           6999999999999999997 689999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC--
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE--  238 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~--  238 (576)
                      +++|+++++++++||+++|++++|++|.++.+++.+++++++++++++++.....+.+.....+ ...++.++.....  
T Consensus        82 ~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  160 (560)
T PRK08751         82 MMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGF  160 (560)
T ss_pred             ECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhccc
Confidence            9999999999999999999999999999999999999999999999999887766655543333 2333332210000  


Q ss_pred             C------------CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH
Q 008134          239 K------------DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA  306 (576)
Q Consensus       239 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~  306 (576)
                      .            ....... .......+.+..........+.....++++++|+|||||||.||||+++|++++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~  239 (560)
T PRK08751        161 PKAALVNFVVKYVKKLVPEY-RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ  239 (560)
T ss_pred             ccchhhhhhhhhhhcccccc-CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHH
Confidence            0            0000000 00112345555544333222334456789999999999999999999999999888776


Q ss_pred             HHhhCCC----CCCC-cEEEEecChHHHHHHHH-HHHHHHhCceEEEC-CcccccccchhhccCccccceeecccEEEec
Q 008134          307 IKTLIPN----PGRS-DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAAV  379 (576)
Q Consensus       307 ~~~~~~~----~~~~-d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~-~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~  379 (576)
                      ....+ .    +..+ +++++.+|++|.+++.. .+.++..|++.++. ++...        ..+++.+.++++|++.++
T Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~  310 (560)
T PRK08751        240 AHQWL-AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDM--------PGFVKELKKTRFTAFTGV  310 (560)
T ss_pred             HHHhh-ccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCH--------HHHHHHHHhcceeEecCh
Confidence            65544 2    3333 57788899999998764 45667778777662 22111        223444999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCH
Q 008134          380 PAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSA  459 (576)
Q Consensus       380 P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~  459 (576)
                      |.++..+.+....  .                                             +...++||.+++||+++++
T Consensus       311 p~~~~~l~~~~~~--~---------------------------------------------~~~l~~lr~v~~gG~~~~~  343 (560)
T PRK08751        311 NTLFNGLLNTPGF--D---------------------------------------------QIDFSSLKMTLGGGMAVQR  343 (560)
T ss_pred             HHHHHHHHcCcCc--C---------------------------------------------CcchhhheeeeeCCCCCCH
Confidence            9999887652110  0                                             0001379999999999999


Q ss_pred             HHHHHHHhhhCCceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccc
Q 008134          460 DSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVT  538 (576)
Q Consensus       460 ~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~  538 (576)
                      .+.+.|++.+++.+++.||+||+++.++..... ....+++|+|+++++++|+| +++..   ++.|..|||+|+|+.++
T Consensus       344 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~---~~~g~~Gel~v~~~~~~  419 (560)
T PRK08751        344 SVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTV---LAIGEIGELCIKGPQVM  419 (560)
T ss_pred             HHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCC---CCCCCceEEEEecCccc
Confidence            999999998899999999999998766544322 22347899999999999999 66654   56899999999999999


Q ss_pred             ccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          539 AGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       539 ~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +||+++|+.|++.|  +.+|  ||+|||+|++|+||.
T Consensus       420 ~gy~~~~~~~~~~~--~~~g--~~~TGD~~~~~~~g~  452 (560)
T PRK08751        420 KGYWKRPEETAKVM--DADG--WLHTGDIARMDEQGF  452 (560)
T ss_pred             hhhcCChhhhhhcc--ccCC--CccccceEEEcCCce
Confidence            99999999999888  5567  999999999999874

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-48  Score=421.48  Aligned_cols=376  Identities=19%  Similarity=0.236  Sum_probs=297.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEE
Q 008134           80 GASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRA  158 (576)
Q Consensus        80 ~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V  158 (576)
                      ...++.++|++++.  ++++|+++            +++           ++||+||.++++++|++|+++ |++++++|
T Consensus         3 ~~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V   57 (529)
T PRK07867          3 SAPTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPHV   57 (529)
T ss_pred             ccccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence            34689999988874  88999986            444           799999999999999999997 89999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++++....+....   +.. .++.++.    
T Consensus        58 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~-~~~~~~~----  129 (529)
T PRK07867         58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGV-RVINVDS----  129 (529)
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCc-eEEEecc----
Confidence            99999999999999999999999999999999999999999999999999988776554432   111 1222111    


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d  318 (576)
                                    ..+.+++..............++++++|+|||||||.||||+++|+++..........+ ++..+|
T Consensus       130 --------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d  194 (529)
T PRK07867        130 --------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDD  194 (529)
T ss_pred             --------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCccc
Confidence                          11333332211111222345678999999999999999999999999998888888888 889999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      ++++.+|++|..++.. ++.++..|+++++.   ++..+.+.           ++++++|++.++|+.+..++.......
T Consensus       195 ~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~~~  263 (529)
T PRK07867        195 VCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPERPD  263 (529)
T ss_pred             EEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCccc
Confidence            9999999999999876 55679999999883   34444444           999999999999999987754211000


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCcee
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~  474 (576)
                                                                     ...+++|. ++||+++++.. ..|.+.+|++++
T Consensus       264 -----------------------------------------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~  294 (529)
T PRK07867        264 -----------------------------------------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVV  294 (529)
T ss_pred             -----------------------------------------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEE
Confidence                                                           00136884 56888888765 566667799999


Q ss_pred             cccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCC------------CceEEE-ccCcccccc
Q 008134          475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP------------RGEIVV-GGFNVTAGY  541 (576)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~------------~GEl~v-~G~~v~~GY  541 (576)
                      +.||+||+++..+...  ....+++|+|+++  ++|+|++++..   ++.|.            .|||++ +|++++.||
T Consensus       295 ~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~---~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy  367 (529)
T PRK07867        295 DGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTE---CPPAEDADGRLLNADEAIGELVNTAGPGGFEGY  367 (529)
T ss_pred             EeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCC---CCCCccccccccccCCcceEEEEecCCcccccc
Confidence            9999999986554322  2344689999998  77888655544   45777            899999 999999999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++|+.|.+.|   ++|  ||+|||+|++|+||.
T Consensus       368 ~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~  396 (529)
T PRK07867        368 YNDPEADAERM---RGG--VYWSGDLAYRDADGY  396 (529)
T ss_pred             cCChHhhhhhh---cCC--eEeeccEEEEeCCCc
Confidence            99999999988   477  999999999998874

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=1.3e-48  Score=461.65  Aligned_cols=422  Identities=18%  Similarity=0.150  Sum_probs=311.5

Q ss_pred             cCCCCCCCCCCccccccCCCC---ccccccCCCCCCHHHHHHHHHHhCCC-CcceeEeeeccccccccCCCcceeeecCC
Q 008134           51 RGVPVEVGGEPGYAIRNAQIP---ELVEVPWKGASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLG  126 (576)
Q Consensus        51 ~~l~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~tl~~~~~~~a~~~Pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~  126 (576)
                      .+.+.++.+++++.+......   .......+...++.+.|+++++++|+ +.|+.+.           ++         
T Consensus       597 ~~~~~l~~~e~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~---------  656 (1140)
T PRK06814        597 AVDPELKGRERRSAAGAALYDIMSDMMFETSDYDRTLFEALIEAAKIHGFKKLAVEDP-----------VN---------  656 (1140)
T ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHcCCCCeEeECC-----------CC---------
Confidence            345566666766554432100   00001123346889999999999974 5666431           22         


Q ss_pred             CceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134          127 DYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (576)
Q Consensus       127 ~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (576)
                        +++||+||.++++++|+.|++ |+++||+|+++++|+++++++++||+++|++++|+||..+.+++.+++++++++++
T Consensus       657 --~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~v  733 (1140)
T PRK06814        657 --GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTV  733 (1140)
T ss_pred             --CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEE
Confidence              369999999999999999975 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EECchhhhHH--HHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeec
Q 008134          207 ICDSKQLKKL--SAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTS  284 (576)
Q Consensus       207 i~~~~~~~~l--~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TS  284 (576)
                      |++++..+..  .+..+.++....++.+++.....          .....+++..... ..........++|+++|+|||
T Consensus       734 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TS  802 (1140)
T PRK06814        734 LTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI----------GLADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTS  802 (1140)
T ss_pred             EecHHHHhhhcchhHHHHhccCceEEEehHhhccC----------ChHHHHHHHhhcc-CCccccCCCCCCCcEEEEECC
Confidence            9998755432  12222223333445444321100          0000111111111 111111235789999999999


Q ss_pred             CCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHH-HHHHHHHHhCceEEECCcccccccchhhccC
Q 008134          285 GSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLTMTDTSSKIKKG  363 (576)
Q Consensus       285 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~  363 (576)
                      ||||.||||+++|+++.+.+......+ +++++|++++.+|++|.+++ ..++.++..|+++++.+...-.       +.
T Consensus       803 GTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~-------~~  874 (1140)
T PRK06814        803 GSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHY-------RI  874 (1140)
T ss_pred             CccCCCcEEEecHHHHHHHHHHHHHhh-CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccH-------HH
Confidence            999999999999999999988888888 89999999999999999998 4478889999999884321100       11


Q ss_pred             ccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHh
Q 008134          364 TKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL  443 (576)
Q Consensus       364 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  443 (576)
                      +.+.++++++|++.++|++++.+.+....                                                 ..
T Consensus       875 ~~~~i~~~~~t~~~~~p~~l~~l~~~~~~-------------------------------------------------~~  905 (1140)
T PRK06814        875 IPELIYDTNATILFGTDTFLNGYARYAHP-------------------------------------------------YD  905 (1140)
T ss_pred             HHHHHHhcCCEEEEecHHHHHHHHhhccc-------------------------------------------------cc
Confidence            22338899999999999999887542100                                                 01


Q ss_pred             CCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCC
Q 008134          444 GGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDK  523 (576)
Q Consensus       444 ~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~  523 (576)
                      .+++|.+++||+++++++.+.|++.++++++|.||+||++..++.........+++|+|+||+++++++.+ +       
T Consensus       906 ~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~-~-------  977 (1140)
T PRK06814        906 FRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP-G-------  977 (1140)
T ss_pred             ccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC-C-------
Confidence            14899999999999999999999999999999999999988766554444556899999999999998732 1       


Q ss_pred             CCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          524 PMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       524 ~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .++.|||+|+|++++.||+++++.+.  +....+|  ||+|||+|++|+||.
T Consensus       978 ~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~~~~g--~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814        978 IDEGGRLFVRGPNVMLGYLRAENPGV--LEPPADG--WYDTGDIVTIDEEGF 1025 (1140)
T ss_pred             CCCceEEEEeCCCcchhhcCCCCCCc--cccCCCC--eEecCCEEEECCCCe
Confidence            35789999999999999999875432  2112456  999999999999984

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.3e-48  Score=423.42  Aligned_cols=404  Identities=21%  Similarity=0.221  Sum_probs=307.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++.+|+++|+.+            .++           .+||.||.++++++|.+|.++|+++|++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~   89 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF   89 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC-
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD-  240 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~-  240 (576)
                      ++|+++++++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+..... ..+.++..+....... 
T Consensus        90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~  168 (567)
T PRK06178         90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE  168 (567)
T ss_pred             CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999998877776655433 3344444332111000 


Q ss_pred             CC--CC-CCC-CCceEeehHHHHHcCC--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          241 SG--VS-GGI-SNWTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       241 ~~--~~-~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                      ..  .. ... .......+.++.....  ..........++++++|+|||||||.||||+++|++++..+.........+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~  248 (567)
T PRK06178        169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG  248 (567)
T ss_pred             cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence            00  00 000 0000011222222111  111112345689999999999999999999999999987765544332267


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                      ..+|++++.+|++|.+++.. ++.++..|+++++.+   +..+.           ..++++++|.+.++|..+..+....
T Consensus       249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~-----------~~i~~~~~t~~~~~~~~~~~l~~~~  317 (567)
T PRK06178        249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFM-----------AAVERYRVTRTVMLVDNAVELMDHP  317 (567)
T ss_pred             CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHH-----------HHHHHhCCeEEeccHHHHHHHHhCC
Confidence            88999999999999999754 778899999999843   33333           4499999999999999988775421


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEE--EcCCCCCHHHHHHHHhh
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI--CGGAPLSADSQRFINIC  468 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~--~gG~~l~~~~~~~~~~~  468 (576)
                      ..   .                                            +...+++|.+.  ++|+++++++.+.|+..
T Consensus       318 ~~---~--------------------------------------------~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  350 (567)
T PRK06178        318 RF---A--------------------------------------------EYDLSSLRQVRVVSFVKKLNPDYRQRWRAL  350 (567)
T ss_pred             CC---C--------------------------------------------CCCcchheeeeeccccccCCHHHHHHHHHH
Confidence            00   0                                            00012566654  44699999999999998


Q ss_pred             hCCcee-cccCcccccCCccccCCC-------CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccc
Q 008134          469 MGAPIG-QAYGLTETCAGSTFSEWD-------DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (576)
Q Consensus       469 ~~~~l~-~~YG~TE~~~~~~~~~~~-------~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~G  540 (576)
                      +|..++ +.||+||++..++.....       ...++++|+|+||++++|+|+++++.   ++.|+.|||+|+|++++.|
T Consensus       351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~---~~~g~~Gel~v~g~~v~~g  427 (567)
T PRK06178        351 TGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL---LPLGAEGEIVVRTPSLLKG  427 (567)
T ss_pred             hCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCc---CCCCCceEEEEECCccccc
Confidence            887776 579999987665433211       12346799999999999999766655   5689999999999999999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++++.+++.|   .+|  ||+|||+|++++||.
T Consensus       428 Y~~~~~~~~~~~---~dg--~~~TGDl~~~~~~g~  457 (567)
T PRK06178        428 YWNKPEATAEAL---RDG--WLHTGDIGKIDEQGF  457 (567)
T ss_pred             ccCChhhhhhcc---cCC--ceeecceEEEecCCe
Confidence            999999999888   467  999999999998863

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-48  Score=420.46  Aligned_cols=371  Identities=18%  Similarity=0.189  Sum_probs=291.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.+.|+++++++|+++|+..            +++           .+||+||.++++++|++|++.|+++||+|++
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i   90 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVGV   90 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            36899999999999999999975            322           6999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++++++...+.+....      ..++.++...    
T Consensus        91 ~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~----  160 (516)
T PRK13383         91 MCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------DAVAVIDPAT----  160 (516)
T ss_pred             ECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------cceEEeccch----
Confidence            999999999999999999999999999999999999999999999999987665544321      1122222110    


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHH--HHHHHhhCCCCCCCc
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVAT--AAAIKTLIPNPGRSD  318 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~~d  318 (576)
                                       ....  ..  ...+...++.++|+|||||||.||||+++|......  .......+ .+.++|
T Consensus       161 -----------------~~~~--~~--~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d  218 (516)
T PRK13383        161 -----------------AGAE--ES--GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS  218 (516)
T ss_pred             -----------------hhhh--cC--CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence                             0000  00  011123456789999999999999999999843221  22223344 788899


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHH
Q 008134          319 VYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVE  395 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~  395 (576)
                      +++..+|++|.+++...+.++..|+++++   .++..+.+.           ++++++|.+.++|+++..+.........
T Consensus       219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~  287 (516)
T PRK13383        219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQ-----------ASLHRADAFTAVPVVLARILELPPRVRA  287 (516)
T ss_pred             eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHHHhccccccc
Confidence            99999999999999888889999999987   333333333           8999999999999999888653211000


Q ss_pred             hcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceec
Q 008134          396 EKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQ  475 (576)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~  475 (576)
                      .                                             ...+++|.+++||+++++++.++|.+.++..+++
T Consensus       288 ~---------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~  322 (516)
T PRK13383        288 R---------------------------------------------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYN  322 (516)
T ss_pred             c---------------------------------------------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhh
Confidence            0                                             0114899999999999999999999999999999


Q ss_pred             ccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134          476 AYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~  554 (576)
                      .||+||++..+...... .....++|+|+++++++|+| +++..   +++|+.|||+|+|+.++.||++++.   +.+  
T Consensus       323 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~--  393 (516)
T PRK13383        323 GYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRP---VGPRVTGRIFVGGELAGTRYTDGGG---KAV--  393 (516)
T ss_pred             cccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCC---CCCCCceEEEEecCcccccccCCch---hhe--
Confidence            99999998665433221 12347899999999999999 55543   5689999999999999999998764   222  


Q ss_pred             cccccceeeeCCeecccCcc
Q 008134          555 NFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~  574 (576)
                       .+|  ||+|||+|++|+||
T Consensus       394 -~~g--~~~TGDl~~~d~~G  410 (516)
T PRK13383        394 -VDG--MTSTGDMGYLDNAG  410 (516)
T ss_pred             -ecC--ceecceeEEEcCCc
Confidence             367  99999999999886

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-48  Score=415.08  Aligned_cols=355  Identities=22%  Similarity=0.240  Sum_probs=283.0

Q ss_pred             HHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHH
Q 008134           91 SCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI  170 (576)
Q Consensus        91 ~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~v  170 (576)
                      .++..++++|+.+            +++           ++||+||.++++++|..|+     ++|+|+++++|++++++
T Consensus         9 ~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~   60 (471)
T PRK07787          9 VAAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVL   60 (471)
T ss_pred             hhcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHH
Confidence            3455688999876            444           7999999999999999996     47999999999999999


Q ss_pred             HHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCc
Q 008134          171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW  250 (576)
Q Consensus       171 a~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~  250 (576)
                      +++||+++|++++|++|..+.+++.++++++++++++++.+..      ...++...   . ...               
T Consensus        61 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~---~-~~~---------------  115 (471)
T PRK07787         61 AVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP---V-RLH---------------  115 (471)
T ss_pred             HHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee---e-ecc---------------
Confidence            9999999999999999999999999999999999999976311      00111000   0 000               


Q ss_pred             eEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHH
Q 008134          251 TVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVL  330 (576)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~  330 (576)
                                  ...........++++++|+|||||||.||||+++|+++...+......+ .+..+|++++.+|++|..
T Consensus       116 ------------~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~  182 (471)
T PRK07787        116 ------------ARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVH  182 (471)
T ss_pred             ------------ccccccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeec
Confidence                        0000011224578999999999999999999999999999988888888 888999999999999999


Q ss_pred             HHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 008134          331 ELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY  409 (576)
Q Consensus       331 ~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  409 (576)
                      +++. ++.++..|+++++.+...        +..++..++ +++|++.++|+++..+.+.....                
T Consensus       183 g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~----------------  237 (471)
T PRK07787        183 GLVLGVLGPLRIGNRFVHTGRPT--------PEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA----------------  237 (471)
T ss_pred             hhHHHHHHHHhcCCEEEecCCCC--------HHHHHHHHh-hCceEEEcchHHHHHHHhCcccc----------------
Confidence            8876 788899999998843211        122334488 99999999999998887521100                


Q ss_pred             HHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCcccc
Q 008134          410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS  489 (576)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~  489 (576)
                                                      ...+++|.+++||+++++++.++|++.++.++++.||+||++...+..
T Consensus       238 --------------------------------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  285 (471)
T PRK07787        238 --------------------------------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTR  285 (471)
T ss_pred             --------------------------------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecC
Confidence                                            001489999999999999999999998999999999999998755444


Q ss_pred             CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCC-CCceEEEccCcccccccCCcccchhhhcccccccceeeeCCee
Q 008134          490 EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYV  568 (576)
Q Consensus       490 ~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g-~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg  568 (576)
                      ......+.++|+|+++++++|+| +++..++  ..| ..|||+++|++++.||+++|+.|++.|  .++|  ||+|||+|
T Consensus       286 ~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~--~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~--~~~~--~~~TGDlg  358 (471)
T PRK07787        286 ADGERRPGWVGLPLAGVETRLVD-EDGGPVP--HDGETVGELQVRGPTLFDGYLNRPDATAAAF--TADG--WFRTGDVA  358 (471)
T ss_pred             CCCcccCCcccccCCCcEEEEEC-CCCCCCC--CCCCCceEEEEECcccchhhcCChhhchhcc--cCCC--ceecCceE
Confidence            33333457899999999999999 5555432  123 489999999999999999999999999  4567  99999999


Q ss_pred             cccCccC
Q 008134          569 SCDKTLE  575 (576)
Q Consensus       569 ~~d~d~e  575 (576)
                      ++|+||.
T Consensus       359 ~~~~dg~  365 (471)
T PRK07787        359 VVDPDGM  365 (471)
T ss_pred             EEcCCCC
Confidence            9999874

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5e-48  Score=417.95  Aligned_cols=383  Identities=19%  Similarity=0.225  Sum_probs=287.6

Q ss_pred             HHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHH
Q 008134           90 QSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWF  169 (576)
Q Consensus        90 ~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~  169 (576)
                      .+++++|+++|+.+.+          ++           +.+||+||.++++++|+.|.++|+++||+|+++++|+++++
T Consensus         5 ~~a~~~p~~~a~~~~~----------~~-----------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~   63 (501)
T PRK13390          5 THAQIAPDRPAVIVAE----------TG-----------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL   63 (501)
T ss_pred             hhhhhCCCCcEEEecC----------CC-----------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence            4678899999997631          23           37999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCC
Q 008134          170 IAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN  249 (576)
Q Consensus       170 va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~  249 (576)
                      +++|||+++|++++|+++.++.+++.++++++++++++++.............   ....+.+....             
T Consensus        64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-------------  127 (501)
T PRK13390         64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI-------------  127 (501)
T ss_pred             HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc-------------
Confidence            99999999999999999999999999999999999999987654333322111   11122222110             


Q ss_pred             ceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEe--chHHHHHHH----HHHHhhCCCCCCCcEEEEe
Q 008134          250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVATA----AAIKTLIPNPGRSDVYLAY  323 (576)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--sh~~l~~~~----~~~~~~~~~~~~~d~~l~~  323 (576)
                      .....+++.....  .   +.....++.++|+|||||||.||||++  +|.++....    ......+ .+..+|++++.
T Consensus       128 ~~~~~~~~~~~~~--~---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  201 (501)
T PRK13390        128 DGFGSFEAALAGA--G---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSS  201 (501)
T ss_pred             cccccHHHHhccc--C---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEec
Confidence            0112233332211  0   111122357999999999999999995  566654422    1122345 78889999999


Q ss_pred             cChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHH
Q 008134          324 LPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKN  403 (576)
Q Consensus       324 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~  403 (576)
                      +|++|.+++...+..+..|+++++.+...        ...++..|+++++|++.++|+++..+.........        
T Consensus       202 ~p~~h~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------  265 (501)
T PRK13390        202 APIYHAAPLRWCSMVHALGGTVVLAKRFD--------AQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT--------  265 (501)
T ss_pred             ccchhhhHHHHHHHHHhcCceEEEcCCcC--------HHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc--------
Confidence            99999998866556677899998843211        12234449999999999999999888652111000        


Q ss_pred             HHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCccccc
Q 008134          404 LFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETC  483 (576)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~  483 (576)
                                                           ....+++|.+++||+++++++.+.+++.++..+++.||+||++
T Consensus       266 -------------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  308 (501)
T PRK13390        266 -------------------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH  308 (501)
T ss_pred             -------------------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccC
Confidence                                                 0011379999999999999999999998899999999999998


Q ss_pred             CCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccccccee
Q 008134          484 AGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWML  562 (576)
Q Consensus       484 ~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~  562 (576)
                      +++...... ....+++|+|+++ +++|+| ++++.   +++|+.|||+|+|++++.||+++|+.|++.|....+|  ||
T Consensus       309 ~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~--w~  381 (501)
T PRK13390        309 GMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNE---LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPF--WT  381 (501)
T ss_pred             ceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecCCccccccCChhhhHHhhccCCCc--eE
Confidence            755433222 1245789999999 799999 66654   5799999999999999999999999999998332355  99


Q ss_pred             eeCCeecccCccC
Q 008134          563 CICLYVSCDKTLE  575 (576)
Q Consensus       563 ~TGDlg~~d~d~e  575 (576)
                      +|||+|++|+||.
T Consensus       382 ~tGDl~~~~~dg~  394 (501)
T PRK13390        382 TVGDLGSVDEDGY  394 (501)
T ss_pred             EcCceEEECCCCe
Confidence            9999999999874

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-48  Score=425.78  Aligned_cols=400  Identities=19%  Similarity=0.232  Sum_probs=288.5

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ++.++|++++..+|+++|+++.+..        ...      .+..+++||+||.++++++|++|+++| ++||+|++++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~~~~--------~~~------~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~   66 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFIDYE--------QDP------AGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA   66 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEEccC--------CCC------CCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence            6789999999999999999874210        000      122357999999999999999999999 6899999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccC---CCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCC--CccEEEEecCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLK--TIKNVIYFENDGS  237 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~--~~~~vv~~~~~~~  237 (576)
                      +|++++++++|||+++|++++|+++   ..+.+++.++++++++++++++++..+.+.+......  ....++.++..  
T Consensus        67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  144 (578)
T PRK05850         67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL--  144 (578)
T ss_pred             CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence            9999999999999999999999997   4578999999999999999999887766654322111  11112221110  


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC----
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN----  313 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~----  313 (576)
                                         ++   ............++++++|+|||||||.||||+++|+++++.+......+..    
T Consensus       145 -------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  202 (578)
T PRK05850        145 -------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGG  202 (578)
T ss_pred             -------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhcccccc
Confidence                               00   0001111223457899999999999999999999999999887665543202    


Q ss_pred             -CCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          314 -PGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       314 -~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                       ...++++++.+|++|+++++. ++.+++.|+++++.++..+...    +..++..+.+++++++ .+|.++..+.....
T Consensus       203 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~  277 (578)
T PRK05850        203 VPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKT  277 (578)
T ss_pred             CCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhc
Confidence             356889999999999999865 7888999999998654322111    2334455889999855 56665433322110


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC-
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG-  470 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~-  470 (576)
                      ... .                                          +.....+++|.+++||+++++++.++|.+.++ 
T Consensus       278 ~~~-~------------------------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  314 (578)
T PRK05850        278 SDD-D------------------------------------------MAGLDLGGVLGIISGSERVHPATLKRFADRFAP  314 (578)
T ss_pred             chh-h------------------------------------------hcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence            000 0                                          00001137999999999999999999888762 


Q ss_pred             -----CceecccCcccccCCccccCCCCC-------------------------CCCccCCCCCCcEEEEeecCCCCCcC
Q 008134          471 -----APIGQAYGLTETCAGSTFSEWDDP-------------------------SVGRVGPPVPCCYIKLVSWDEGGYKT  520 (576)
Q Consensus       471 -----~~l~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~vG~p~~~~~~~ivd~~~~~~~~  520 (576)
                           ..+++.||+||++..+........                         ...++|+|. +.+++|+|++++..  
T Consensus       315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~--  391 (578)
T PRK05850        315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE--  391 (578)
T ss_pred             cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC--
Confidence                 368999999998765443321110                         012456664 68999999655544  


Q ss_pred             CCCCCCCceEEEccCcccccccCCcccchhhhcc---cc-c---ccceeeeCCeecccCcc
Q 008134          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV---NF-H---CVWMLCICLYVSCDKTL  574 (576)
Q Consensus       521 ~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~---~~-~---g~~~~~TGDlg~~d~d~  574 (576)
                       ++.|+.|||+|+|++++.|||++|+.|++.|..   ++ +   +.+||+|||+|++| ||
T Consensus       392 -~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G  450 (578)
T PRK05850        392 -CPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG  450 (578)
T ss_pred             -CCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence             678999999999999999999999999999942   11 0   12499999999987 65

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-48  Score=422.75  Aligned_cols=406  Identities=25%  Similarity=0.306  Sum_probs=301.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++++|++.++.+|+++|+++            +++           .+||+||.++++++|++|.+.|+++||+|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~   80 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIM   80 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6899999999999999999986            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCC--
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEK--  239 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~--  239 (576)
                      ++|+++++++++||+++|++++|++|.++.+++.++++.++++++++++.....+....... ....++.........  
T Consensus        81 ~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  159 (563)
T PRK06710         81 LPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSAT-KIEHVIVTRIADFLPFP  159 (563)
T ss_pred             CCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhh-ccceeEEeccccccccc
Confidence            99999999999999999999999999999999999999999999999887655443332211 122222211000000  


Q ss_pred             CC------------CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH
Q 008134          240 DS------------GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI  307 (576)
Q Consensus       240 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~  307 (576)
                      ..            .+...........++.+.... ..........++++++|+|||||||.||||+++|++++......
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~  238 (563)
T PRK06710        160 KNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMG  238 (563)
T ss_pred             cccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHH
Confidence            00            000000000001122221111 11111112235789999999999999999999999997654433


Q ss_pred             HhhCCCC-CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHH
Q 008134          308 KTLIPNP-GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (576)
Q Consensus       308 ~~~~~~~-~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~  385 (576)
                      ...+... ..++++++.+|++|.+++.. ++.++..|+++++.++..        ...+++.+.++++|++.++|+++..
T Consensus       239 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~--------~~~~~~~i~~~~~t~~~~~P~~~~~  310 (563)
T PRK06710        239 VQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD--------MKMVFEAIKKHKVTLFPGAPTIYIA  310 (563)
T ss_pred             HhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCC--------HHHHHHHHHHcCCeEEeccHHHHHH
Confidence            3322133 34568899999999998765 556888999998844311        1223444999999999999999988


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Q 008134          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (576)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~  465 (576)
                      +.......                                               ....+++|.+++||+++++++.+++
T Consensus       311 l~~~~~~~-----------------------------------------------~~~~~~lr~v~~gg~~~~~~~~~~~  343 (563)
T PRK06710        311 LLNSPLLK-----------------------------------------------EYDISSIRACISGSAPLPVEVQEKF  343 (563)
T ss_pred             HHcCCccc-----------------------------------------------cCChhhhhheeeCCCcCCHHHHHHH
Confidence            76521100                                               0001378999999999999999999


Q ss_pred             HhhhCCceecccCcccccCCccccCC-CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCC
Q 008134          466 NICMGAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNN  544 (576)
Q Consensus       466 ~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~  544 (576)
                      ++.+++++++.||+||++.++..... .....+++|+|.+++.++|+|++++..   ++.|..|||+++|+.++.||+++
T Consensus       344 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~---~~~g~~Gel~v~g~~~~~gY~~~  420 (563)
T PRK06710        344 ETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA---LPPGEIGEIVVKGPQIMKGYWNK  420 (563)
T ss_pred             HHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCcc---CCCCCceEEEEecCccchhhhCC
Confidence            99889999999999999876543322 222347899999999999999666554   56899999999999999999999


Q ss_pred             cccchhhhcccccccceeeeCCeecccCccC
Q 008134          545 PGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       545 ~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+.|+..|   .+|  ||+|||+|++|+||.
T Consensus       421 ~~~~~~~~---~~g--~~~TGD~~~~~~~g~  446 (563)
T PRK06710        421 PEETAAVL---QDG--WLHTGDVGYMDEDGF  446 (563)
T ss_pred             hHHHhhhc---ccC--cccccceEEEcCCCc
Confidence            99999888   467  999999999998873

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.6e-47  Score=414.10  Aligned_cols=380  Identities=18%  Similarity=0.166  Sum_probs=306.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++++++++.+|+++|+..            +++           .+||+||.++++++|..|.++|+++|++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~   58 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF   58 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            4688999999999999999875            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+.+++++++||+++|++++|+++..+.+++.++++.+++++++++.+....    .   .                 
T Consensus        59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~-----------------  114 (503)
T PRK04813         59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE----I---L-----------------  114 (503)
T ss_pred             cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc----c---c-----------------
Confidence            999999999999999999999999999999999999999999999998764100    0   0                 


Q ss_pred             CCCCCCCCceEeehHHHHHcCC--CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGK--RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDV  319 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~  319 (576)
                             .+..+.++++.....  ..........++++++++|||||||.||||.++|+++...+.+....+ .+..+++
T Consensus       115 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~  186 (503)
T PRK04813        115 -------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQ  186 (503)
T ss_pred             -------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCce
Confidence                   112233333322111  111112345678899999999999999999999999999988888888 8899999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      ++...|++|..++..++.+|..|+++++.+.....+.     ..++..+.++++|++.++|+++..+......       
T Consensus       187 ~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~-----~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~-------  254 (503)
T PRK04813        187 FLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANF-----KQLFETLPQLPINVWVSTPSFADMCLLDPSF-------  254 (503)
T ss_pred             eeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCeEEEeChHHHHHHHHhhcc-------
Confidence            9999999999998888899999999998554322222     2234448999999999999999876542110       


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccC
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYG  478 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  478 (576)
                                                              .+...+++|.++++|+++++.+.+++.+.+ ++.+++.||
T Consensus       255 ----------------------------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG  294 (503)
T PRK04813        255 ----------------------------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYG  294 (503)
T ss_pred             ----------------------------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcc
Confidence                                                    001124899999999999999999999988 789999999


Q ss_pred             cccccCCccccCC-----CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhc
Q 008134          479 LTETCAGSTFSEW-----DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (576)
Q Consensus       479 ~TE~~~~~~~~~~-----~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~  553 (576)
                      +||++...+....     ......++|+|.++++++|+| +++..   ++.|+.|||+|+|+.++.||+++++.|.+.|.
T Consensus       295 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~  370 (503)
T PRK04813        295 PTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTK---LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFF  370 (503)
T ss_pred             cchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCC---CCCCCceEEEEeccccccccCCChhHhHHhhc
Confidence            9998765433211     112346899999999999999 66654   46889999999999999999999999999984


Q ss_pred             ccccccceeeeCCeecccCcc
Q 008134          554 VNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       554 ~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      . .+|.+||+|||+|++ +||
T Consensus       371 ~-~~g~~~~~tGD~~~~-~~g  389 (503)
T PRK04813        371 T-FDGQPAYHTGDAGYL-EDG  389 (503)
T ss_pred             c-CCCceeEECCceEEe-eCC
Confidence            3 356679999999999 665

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.6e-47  Score=416.87  Aligned_cols=405  Identities=23%  Similarity=0.281  Sum_probs=306.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i  160 (576)
                      .++.++|+.+++++|+++|+..            +++           ++||.||.++++++|.+|++ .|+++|++|++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i   79 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVAL   79 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            5899999999999999999985            333           69999999999999999985 89999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++.+..+.+.++.... ....++..........
T Consensus        80 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  158 (560)
T PRK08974         80 MMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLST  158 (560)
T ss_pred             ECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccc
Confidence            999999999999999999999999999999999999999999999999887666555543322 2223222211000000


Q ss_pred             CC--------------CCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH
Q 008134          241 SG--------------VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA  306 (576)
Q Consensus       241 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~  306 (576)
                      ..              .... ......++.+....+...........++++++|+|||||||.||||+++|++++..+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~  237 (560)
T PRK08974        159 AKGTLVNFVVKYIKRLVPKY-HLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ  237 (560)
T ss_pred             cccccccchhhhcccccccc-cCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence            00              0000 00112233333332222221123356789999999999999999999999999887665


Q ss_pred             HHhhCC--CCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC-CcccccccchhhccCccccceeecccEEEecHHH
Q 008134          307 IKTLIP--NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG-STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI  382 (576)
Q Consensus       307 ~~~~~~--~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~-~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~  382 (576)
                      ....+.  ....++.++..+|++|.+++.. .+.++..|+++++. ++...        ..++..++++++|.+.++|++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~--------~~~~~~i~~~~~t~~~~~p~~  309 (560)
T PRK08974        238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDI--------PGFVKELKKYPFTAITGVNTL  309 (560)
T ss_pred             HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCH--------HHHHHHHHhcCcceEcCcHHH
Confidence            444331  2334568889999999988654 56678889887773 22111        123344899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH
Q 008134          383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQ  462 (576)
Q Consensus       383 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~  462 (576)
                      +..+.......                                               ....+++|.+++||+++++.+.
T Consensus       310 ~~~l~~~~~~~-----------------------------------------------~~~~~~lr~~~~gg~~~~~~~~  342 (560)
T PRK08974        310 FNALLNNEEFQ-----------------------------------------------ELDFSSLKLSVGGGMAVQQAVA  342 (560)
T ss_pred             HHHHHhCcCcc-----------------------------------------------cCCccceeEEEecCccCCHHHH
Confidence            99886521100                                               0011489999999999999999


Q ss_pred             HHHHhhhCCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccc
Q 008134          463 RFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY  541 (576)
Q Consensus       463 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY  541 (576)
                      ++|++.+|+++++.||+||++..++...... ...+++|+|+|+++++|+| +++..   ++.|..|||+|+|+.++.||
T Consensus       343 ~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~---~~~g~~Gel~v~g~~~~~gy  418 (560)
T PRK08974        343 ERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNE---VPPGEPGELWVKGPQVMLGY  418 (560)
T ss_pred             HHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCC---CCCCCceEEEEecCCcchhh
Confidence            9999988999999999999987766543322 2347899999999999999 55554   56899999999999999999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++++.+++.|   ++|  ||+|||+|++|++|.
T Consensus       419 ~~~~~~~~~~~---~~g--~~~TGDl~~~~~~g~  447 (560)
T PRK08974        419 WQRPEATDEVI---KDG--WLATGDIAVMDEEGF  447 (560)
T ss_pred             cCChhhhhhhh---hcC--CcccCCEEEEcCCce
Confidence            99999999888   567  999999999998763

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.1e-47  Score=411.04  Aligned_cols=385  Identities=18%  Similarity=0.181  Sum_probs=299.9

Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      .+.+++++|+++|+++..          ++           +.+||+||.++++++|++|.++|+++|++|+++++|+++
T Consensus         3 ~~~~a~~~p~~~a~~~~~----------~~-----------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~   61 (511)
T PRK13391          3 PGIHAQTTPDKPAVIMAS----------TG-----------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLR   61 (511)
T ss_pred             hhhhHhhCCCceEEEecC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence            356788999999998631          23           379999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      ++++++||+++|++++|+++.++.+++.++++++++++++++......+.+....++.....+.++.....         
T Consensus        62 ~~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  132 (511)
T PRK13391         62 YLEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------  132 (511)
T ss_pred             HHHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------
Confidence            99999999999999999999999999999999999999999988777666665555555555555432110         


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEe--chHHHHHH---HHHHHhhCCCCCCCcEEEE
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI--THGNIVAT---AAAIKTLIPNPGRSDVYLA  322 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--sh~~l~~~---~~~~~~~~~~~~~~d~~l~  322 (576)
                        .....+.+.....   +. ......++.++|+|||||||.||||++  +|.++...   .......+ .+..++++++
T Consensus       133 --~~~~~~~~~~~~~---~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~  205 (511)
T PRK13391        133 --EGFVGYAEAVAGL---PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLS  205 (511)
T ss_pred             --cccccHHHHhcCC---CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEE
Confidence              1122233333211   11 111234567899999999999999995  46665432   23344455 7788999999


Q ss_pred             ecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          323 YLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       323 ~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      .+|++|.+++...+.++..|+++++.   ++..+.+           .++++++|++.++|+++..+........     
T Consensus       206 ~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~i~~~~~t~~~~~p~~~~~l~~~~~~~~-----  269 (511)
T PRK13391        206 PAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLA-----------LIEEYGVTHTQLVPTMFSRMLKLPEEVR-----  269 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHH-----------HHHHhCCeEEEehHHHHHHHHhCchhhc-----
Confidence            99999999988888899999999984   3334444           4999999999999999988764211100     


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                              .+...+++|.+++||+++++++.+++++.+|..+++.||+
T Consensus       270 ----------------------------------------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~  309 (511)
T PRK13391        270 ----------------------------------------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAA  309 (511)
T ss_pred             ----------------------------------------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecc
Confidence                                                    0011248999999999999999999999889999999999


Q ss_pred             ccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccc
Q 008134          480 TETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHC  558 (576)
Q Consensus       480 TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g  558 (576)
                      ||++.++...... ...++++|+|+++ .++|+| +++..   ++.|..|||+++|+ ++.||+++++.+++.|..+ +|
T Consensus       310 tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~---~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~-~~  382 (511)
T PRK13391        310 TEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAE---LPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPD-GT  382 (511)
T ss_pred             ccccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCC---CCCCCceEEEEecC-cceEEcCChhHhHHhhccC-CC
Confidence            9998765543222 2345799999999 699998 66654   46899999999999 8999999999999998322 35


Q ss_pred             cceeeeCCeecccCcc
Q 008134          559 VWMLCICLYVSCDKTL  574 (576)
Q Consensus       559 ~~~~~TGDlg~~d~d~  574 (576)
                        ||+|||+|++|+||
T Consensus       383 --w~~TGD~g~~~~~g  396 (511)
T PRK13391        383 --WSTVGDIGYVDEDG  396 (511)
T ss_pred             --EEecCCEEEECCCc
Confidence              99999999999886

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-47  Score=422.39  Aligned_cols=398  Identities=20%  Similarity=0.211  Sum_probs=298.1

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      .+.++++..++.++|+..++.+|+..++..            ++        ..++.+||.||.++++++|.+|+++|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~~~~~~Ty~eL~~~~~~~a~~L~~~gi~   72 (579)
T PRK09192         13 LPRRYADFPTLVEALDYAALGEAGMNFYDR------------RG--------QLEEALPYQTLRARAEAGARRLLALGLK   72 (579)
T ss_pred             ccccccchhhHHHHHHHhhccCCceEEEec------------CC--------CEEEEecHHHHHHHHHHHHHHHHHhCCC
Confidence            345567778999999999999886654421            22        1235799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCC-------HHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG-------EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI  226 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~  226 (576)
                      +||+|+++++|+++++++++||+++|++++|+++..+       .+++.++++.++++++|++....+.+.+......  
T Consensus        73 ~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~--  150 (579)
T PRK09192         73 PGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP--  150 (579)
T ss_pred             CCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc--
Confidence            9999999999999999999999999999999987543       6899999999999999999887666555432111  


Q ss_pred             cEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH
Q 008134          227 KNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA  306 (576)
Q Consensus       227 ~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~  306 (576)
                       .                     ..+.++.++...... ........++++++|+|||||||.||||+++|++++..+..
T Consensus       151 -~---------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~  207 (579)
T PRK09192        151 -L---------------------LHVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA  207 (579)
T ss_pred             -c---------------------cceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHH
Confidence             0                     111223333221111 11123346789999999999999999999999999998887


Q ss_pred             HHh-hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHH
Q 008134          307 IKT-LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD  384 (576)
Q Consensus       307 ~~~-~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~  384 (576)
                      ... .+ ++.++|++++++|++|++++.. ++.++..|+++++.....+...    +..++..+.++++|+++.+|.++.
T Consensus       208 ~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~~~~~~  282 (579)
T PRK09192        208 ISHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR----PLQWLDLISRNRGTISYSPPFGYE  282 (579)
T ss_pred             HHhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC----HHHHHHHHHhcCcEEEeCCcHHHH
Confidence            776 66 8999999999999999999876 5567889998877432222111    223444599999998776555554


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHH
Q 008134          385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF  464 (576)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~  464 (576)
                      .+........                                            ++....+++|.+++||+++++.+.+.
T Consensus       283 l~~~~~~~~~--------------------------------------------~~~~~l~~lr~~~~gG~~l~~~~~~~  318 (579)
T PRK09192        283 LCARRVNSKD--------------------------------------------LAELDLSCWRVAGIGADMIRPDVLHQ  318 (579)
T ss_pred             HHHHhhcccc--------------------------------------------ccccchhhhheeEecCccCCHHHHHH
Confidence            4432110000                                            00011148999999999999999998


Q ss_pred             HHhhhC------CceecccCcccccCCccccCCCCC----------------------------CCCccCCCCCCcEEEE
Q 008134          465 INICMG------APIGQAYGLTETCAGSTFSEWDDP----------------------------SVGRVGPPVPCCYIKL  510 (576)
Q Consensus       465 ~~~~~~------~~l~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~~~~~~~i  510 (576)
                      |.+.++      ..+++.||+||+++.++.......                            ...++|+|+||++++|
T Consensus       319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i  398 (579)
T PRK09192        319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI  398 (579)
T ss_pred             HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEE
Confidence            888763      348999999999876654332110                            1247999999999999


Q ss_pred             eecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       511 vd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +| +++..   ++.|+.|||+|+|+++++|||++ +.+.+.|  ..+|  ||+|||+|++ +||.
T Consensus       399 ~d-~~~~~---~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~--~~dg--w~~TGDlg~~-~~G~  453 (579)
T PRK09192        399 RN-EAGMP---LPERVVGHICVRGPSLMSGYFRD-EESQDVL--AADG--WLDTGDLGYL-LDGY  453 (579)
T ss_pred             EC-CCCCC---CCCCCEEEEEecCCchhhhhcCC-ccccccc--cCCc--eeeccceeeE-ECCE
Confidence            99 55554   56889999999999999999999 6777777  5677  9999999998 7763

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-46  Score=408.48  Aligned_cols=401  Identities=18%  Similarity=0.206  Sum_probs=308.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      -++.++|+++++++|+++|+.+            +++           .+||.||.++++++|++|.+.|+++||+|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~   59 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIY   59 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            3789999999999999999986            333           79999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.++++++++++++++......+.+.....+..+.++.++......  
T Consensus        60 ~~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  137 (533)
T PRK07798         60 ARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND--  137 (533)
T ss_pred             cCCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc--
Confidence            999999999999999999999999999999999999999999999999887777777665666667777766432111  


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC--------CC
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--------PN  313 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------~~  313 (576)
                            .....++++++........ .... ..++.++|+|||||||.||||+++|+++..........+        ..
T Consensus       138 ------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~  209 (533)
T PRK07798        138 ------LLPGAVDYEDALAAGSPER-DFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEE  209 (533)
T ss_pred             ------cCCccccHHHHHhccCCcC-CCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhh
Confidence                  0112456777665432221 1112 233457999999999999999999999986554432211        01


Q ss_pred             C------CCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHH-H
Q 008134          314 P------GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-V  386 (576)
Q Consensus       314 ~------~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~-l  386 (576)
                      +      ..+++++..+|++|..+++.++.+++.|+++++.+.. ..+     +..++..++++++|.+.++|..+.. +
T Consensus       210 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~-~~~-----~~~~~~~i~~~~~t~~~~~~~~~~~~l  283 (533)
T PRK07798        210 LAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDV-RFD-----ADEVWRTIEREKVNVITIVGDAMARPL  283 (533)
T ss_pred             hcccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCC-CcC-----HHHHHHHHHHhCCeEEEechHHHHHHH
Confidence            1      5678999999999999999999999999999996532 111     2334555999999999999886644 2


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH
Q 008134          387 REGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN  466 (576)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~  466 (576)
                      ..... .                                             ......+++|.+++||+++++++.++|+
T Consensus       284 ~~~~~-~---------------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~  317 (533)
T PRK07798        284 LDALE-A---------------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALL  317 (533)
T ss_pred             HHHhc-c---------------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHH
Confidence            22111 0                                             0001124899999999999999999999


Q ss_pred             hhh-CCceecccCcccccCCccccCCCCCCCCccC--CCCCCcEEEEeecCCCCCcCCCCCCCC--ceEEEccCcccccc
Q 008134          467 ICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG--PPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGGFNVTAGY  541 (576)
Q Consensus       467 ~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG--~p~~~~~~~ivd~~~~~~~~~~~~g~~--GEl~v~G~~v~~GY  541 (576)
                      +.+ +..+++.||+||++.........  .....|  ++.++..++|+| +++..   +++|..  |+|+ +++.++.||
T Consensus       318 ~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~-~~~~~---~~~g~~~~g~l~-~~~~~~~gy  390 (533)
T PRK07798        318 ELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLD-EDGNP---VEPGSGEIGWIA-RRGHIPLGY  390 (533)
T ss_pred             HHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEEC-CCCCC---CCCCCCCeeEEE-eecCccccc
Confidence            887 78999999999986554433221  122344  788999999999 56654   457776  6665 556799999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++|+.|++.|.. .+|.+||+|||+|++|+||.
T Consensus       391 ~~~~~~t~~~f~~-~~~~~~~~TGD~~~~~~~g~  423 (533)
T PRK07798        391 YKDPEKTAETFPT-IDGVRYAIPGDRARVEADGT  423 (533)
T ss_pred             cCChhhhHHhhcc-CCCCceEEcCcEEEEcCCCc
Confidence            9999999999943 35667999999999998874

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-46  Score=410.14  Aligned_cols=396  Identities=19%  Similarity=0.164  Sum_probs=297.0

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+..+.|++.++.+|+++|+.+            ++.           .+||+||.++++++|.+|.+.|+++||+|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~   74 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL   74 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            5788999999999999999976            333           69999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|+++++++++||+++|++++|+++..+.+++.++++++++++++++.+..+.+.+.....+..+. +.++......  
T Consensus        75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--  151 (545)
T PRK08162         75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY--  151 (545)
T ss_pred             CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc--
Confidence            9999999999999999999999999999999999999999999999999887776655443333222 2222211100  


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                        . ....+...++.++............+...+++++|+|||||||.||||+++|+++..........+ .+..+++++
T Consensus       152 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l  227 (545)
T PRK08162        152 --P-GGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYL  227 (545)
T ss_pred             --c-cCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeE
Confidence              0 001123345666654321111111223456789999999999999999999999877766665566 788889999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      +.+|++|..++...+...+.|++.++   .++..+.+.           ++++++|++.++|+++..|.+.......   
T Consensus       228 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~~~~---  293 (545)
T PRK08162        228 WTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDL-----------IREHGVTHYCGAPIVLSALINAPAEWRA---  293 (545)
T ss_pred             eccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHH-----------HHHcCCeEEEechHHHHHHHhCcccccc---
Confidence            99999999988664444344554444   344444444           9999999999999999988753211000   


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                  ...+++.++++|+++++++.++++.. ++++++.||
T Consensus       294 --------------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG  328 (545)
T PRK08162        294 --------------------------------------------GIDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYG  328 (545)
T ss_pred             --------------------------------------------CCccceEEEECCCCCCHHHHHHHHHh-CCceeeccc
Confidence                                                        00245567889999999999988764 899999999


Q ss_pred             cccccCCccccCCC-----------CCCCCccCCCCCC-cEEEEeecCCCCCcCCCCC-C-CCceEEEccCcccccccCC
Q 008134          479 LTETCAGSTFSEWD-----------DPSVGRVGPPVPC-CYIKLVSWDEGGYKTSDKP-M-PRGEIVVGGFNVTAGYFNN  544 (576)
Q Consensus       479 ~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~-~~~~ivd~~~~~~~~~~~~-g-~~GEl~v~G~~v~~GY~~~  544 (576)
                      +||+++.++.....           .....++|.+.+. ..++|+|++++..   ++. | ..|||+|+|+.++.||+++
T Consensus       329 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~---~~~~g~~~Gel~v~g~~~~~gY~~~  405 (545)
T PRK08162        329 LTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQP---VPADGETIGEIMFRGNIVMKGYLKN  405 (545)
T ss_pred             ccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcc---cCCCCCceeEEEEecCcchhhhcCC
Confidence            99986544432111           0112456777653 4688998655543   333 3 4699999999999999999


Q ss_pred             cccchhhhcccccccceeeeCCeecccCcc
Q 008134          545 PGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       545 ~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      ++.|.+.|   .+|  ||+|||+|++|+||
T Consensus       406 ~~~~~~~~---~~g--~~~TGDl~~~d~dg  430 (545)
T PRK08162        406 PKATEEAF---AGG--WFHTGDLAVLHPDG  430 (545)
T ss_pred             hhhhHHHh---hCC--CcccCceEEEcCCc
Confidence            99999999   467  99999999999887

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.9e-46  Score=394.69  Aligned_cols=359  Identities=21%  Similarity=0.211  Sum_probs=288.7

Q ss_pred             eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECc
Q 008134          132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDS  210 (576)
Q Consensus       132 TY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~  210 (576)
                      ||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999999 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCC
Q 008134          211 KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP  290 (576)
Q Consensus       211 ~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P  290 (576)
                      .....+.....      .++.+...                   +..................++++++++|||||||.|
T Consensus        81 ~~~~~~~~~~~------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~p  135 (408)
T TIGR01733        81 ALASRLAGLVL------PIILVDPL-------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRP  135 (408)
T ss_pred             chhhhccccCC------ceEEechh-------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCC
Confidence            76554432210      11111100                   000000000001111124578999999999999999


Q ss_pred             ceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCcccccee
Q 008134          291 KGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV  370 (576)
Q Consensus       291 KgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~  370 (576)
                      |+|.++|+++++.+......+ .+.++|++++..|++|..++..++.++..|+++++.+......     ...+...+++
T Consensus       136 K~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-----~~~~~~~~~~  209 (408)
T TIGR01733       136 KGVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERD-----AALLAALIAE  209 (408)
T ss_pred             CEEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccC-----HHHHHHHHHH
Confidence            999999999999999888888 8899999999999999999988999999999999855443321     1223444888


Q ss_pred             ecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEE
Q 008134          371 LKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFM  450 (576)
Q Consensus       371 ~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v  450 (576)
                      +++|.+.++|.+++.+.+...                                                  ...++||.+
T Consensus       210 ~~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v  239 (408)
T TIGR01733       210 HPVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLV  239 (408)
T ss_pred             cCceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEE
Confidence            999999999999999876432                                                  011489999


Q ss_pred             EEcCCCCCHHHHHHHHhhhC-CceecccCcccccCCccccCCCCC-----CCCccCCCCCCcEEEEeecCCCCCcCCCCC
Q 008134          451 ICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDP-----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKP  524 (576)
Q Consensus       451 ~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~  524 (576)
                      ++||+++++++.++|++.++ +.+++.||+||++.+++.......     +..++|+|+++++++|+|+ ++..   ++.
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~---~~~  315 (408)
T TIGR01733       240 ILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-DLRP---VPV  315 (408)
T ss_pred             EEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-CCCC---CCC
Confidence            99999999999999999987 899999999999887653322211     1568999999999999994 4544   568


Q ss_pred             CCCceEEEccCcccccccCCcccchhhhcccc----cccceeeeCCeecccCccC
Q 008134          525 MPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF----HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       525 g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~----~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+.|||+|+|+.++.||+++++.|.+.|..++    +|.+||+|||+|++|+|+.
T Consensus       316 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~  370 (408)
T TIGR01733       316 GVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGN  370 (408)
T ss_pred             CCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCC
Confidence            99999999999999999999999999985433    3445999999999998874

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-46  Score=433.37  Aligned_cols=412  Identities=17%  Similarity=0.181  Sum_probs=294.8

Q ss_pred             ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCce
Q 008134           50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE  129 (576)
Q Consensus        50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~  129 (576)
                      ++++++++..++.++.....    ...  +...++.++|+++++++||++|+++            +++           
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~----~~~--~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~-----------  471 (994)
T PRK07868        421 VRTLAVETARTLPRLARLGQ----IND--HTRISLGRIIAEQARDAPKGEFLLF------------DGR-----------  471 (994)
T ss_pred             hHHHHHHHHHhhhhHHHhhh----cCC--CCCccHHHHHHHHHHHCCCCeEEEe------------CCc-----------
Confidence            88999999999999844443    222  4447899999999999999999986            443           


Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEEC
Q 008134          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (576)
                      .+||+||.++++++|++|+++|+++||+|+|+++|+++++++++||+++|++++|++|.   +++.+++++++++++|++
T Consensus       472 ~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~  548 (994)
T PRK07868        472 VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITD  548 (994)
T ss_pred             eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEC
Confidence            69999999999999999999999999999999999999999999999999999999985   689999999999999999


Q ss_pred             chhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCC--CCCCCCCCCCeEEEEeecCCC
Q 008134          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSP--VDPSLPSQNGVAVIMYTSGST  287 (576)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTT  287 (576)
                      .+..+.+...      ...+++++......    ...........++++.......+  ..+.+..++++++|+|| |||
T Consensus       549 ~~~~~~~~~~------~~~iiv~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gSt  617 (994)
T PRK07868        549 PTNLEAARQL------PGRVLVLGGGESRD----LDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAG  617 (994)
T ss_pred             hHHHHHHHhc------CceEEEecCCcccc----ccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCC
Confidence            8766554331      24455554321100    00000001111221111000000  01122246899999999 588


Q ss_pred             CCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHh-CceEEE---CCcccccccchhhccC
Q 008134          288 GLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCA-GCAIGY---GSTLTMTDTSSKIKKG  363 (576)
Q Consensus       288 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~-G~~~~~---~~~~~l~~~~~~~~~~  363 (576)
                      |.||++.++|.+...........+ .+..+|++++.+|++|+++++..+.+++. |+++++   .++..+.+.       
T Consensus       618 gtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~-------  689 (994)
T PRK07868        618 GELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQE-------  689 (994)
T ss_pred             CCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHH-------
Confidence            888888888877655554555556 78899999999999999999876655444 555555   333444444       


Q ss_pred             ccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHh
Q 008134          364 TKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL  443 (576)
Q Consensus       364 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  443 (576)
                          |+++++|+++++|++++.+.+.....                                               ...
T Consensus       690 ----I~~~~vT~~~~~Ps~l~~L~~~~~~~-----------------------------------------------~~~  718 (994)
T PRK07868        690 ----VRQYGVTVVSYTWAMLREVVDDPAFV-----------------------------------------------LHG  718 (994)
T ss_pred             ----HHHhCCcEEEeHHHHHHHHHhCcCCc-----------------------------------------------cCC
Confidence                99999999999999999887531100                                               001


Q ss_pred             CCcEEEEEEcCCCCCHHHHHHHHhhhC-CceecccCcccccCCccccCCCCCCCCccCCCCCCc-EEEEe--ec------
Q 008134          444 GGRIRFMICGGAPLSADSQRFINICMG-APIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCC-YIKLV--SW------  513 (576)
Q Consensus       444 ~~~Lr~v~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~~~iv--d~------  513 (576)
                      .++||.++  |+.+++++.+.|.+.++ ++++|.||+||++...+ . ....+.+++|+|+||+ +++|.  |+      
T Consensus       719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~-~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li  794 (994)
T PRK07868        719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-N-VSGAKIGSKGRPLPGAGRVELAAYDPEHDLIL  794 (994)
T ss_pred             CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccc-c-cCCCCCcccCCccCCCCceeEEEecCcCCcee
Confidence            14789776  34599999999999885 89999999999876543 2 2234568999999998 67764  21      


Q ss_pred             -CCCCCcCCCCCCCCceEEEccCcccccccCCcccchhh--hcccccccceeeeCCeecccCccC
Q 008134          514 -DEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV--YKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       514 -~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~--f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       ++.++...+++|+.|||+++|+..    + +|+.+..+  |  . +|++||+|||+|++|+||-
T Consensus       795 ~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~--~-~~dgw~~TGDlg~~d~dG~  851 (994)
T PRK07868        795 EDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVF--A-PADTWISTEYLFRRDDDGD  851 (994)
T ss_pred             ecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhccc--c-cCCEEEeccceEEEcCCCC
Confidence             112221225689999999999863    3 56554333  4  2 2334999999999999984

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-46  Score=409.07  Aligned_cols=387  Identities=22%  Similarity=0.293  Sum_probs=295.7

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.+.+...+...|+.+++...           ++.          +.+||.||+++++++|++|.+.|+++||+|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~   60 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP-----------DAP----------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVL   60 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC-----------CCc----------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            46889888999999999988653           222          579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHH-------HHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL-------IHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~  234 (576)
                      ++|+++++++++||+++|++++|+++..+.+++       .++++.++++++++++.....+......            
T Consensus        61 ~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------  128 (545)
T PRK07768         61 AGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------  128 (545)
T ss_pred             CCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------
Confidence            999999999999999999999999998886554       4567778999999987655433221100            


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                    .+.+++++++......   .+....++++++|+|||||||.||||+++|++++..+......+ ++
T Consensus       129 --------------~~~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~  190 (545)
T PRK07768        129 --------------GIRVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EF  190 (545)
T ss_pred             --------------CCceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CC
Confidence                          1234555665542211   22345679999999999999999999999999999888887777 77


Q ss_pred             CCC-cEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHH
Q 008134          315 GRS-DVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (576)
Q Consensus       315 ~~~-d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  392 (576)
                      ..+ |++++.+|++|+.++.. ++.++..|+++++..+..+...    +..+...++++++|++..+|.++..+......
T Consensus       191 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~  266 (545)
T PRK07768        191 DVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLRR  266 (545)
T ss_pred             CCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence            776 89999999999999876 5567999999988654332211    12234449999999998888877766543211


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh---h
Q 008134          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---M  469 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~---~  469 (576)
                      ....                                           +....+++|.+++||+++++++.+++.+.   +
T Consensus       267 ~~~~-------------------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~  303 (545)
T PRK07768        267 QAKP-------------------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARF  303 (545)
T ss_pred             cccc-------------------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhc
Confidence            1000                                           00011489999999999999999888764   4


Q ss_pred             CC---ceecccCcccccCCccccCCC--------------------------CCCCCccCCCCCCcEEEEeecCCCCCcC
Q 008134          470 GA---PIGQAYGLTETCAGSTFSEWD--------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKT  520 (576)
Q Consensus       470 ~~---~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~vG~p~~~~~~~ivd~~~~~~~~  520 (576)
                      |.   .+++.||+||++..++.....                          .....++|+|+++++++|+| ++++.  
T Consensus       304 g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~--  380 (545)
T PRK07768        304 GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV--  380 (545)
T ss_pred             CCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCC--
Confidence            54   499999999998765443221                          11235899999999999999 66655  


Q ss_pred             CCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       521 ~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                       +++|+.|||+++|+.+++||++++.... .+  +.+|  ||+|||+|++|+||.
T Consensus       381 -~~~g~~Gel~v~~~~~~~gy~~~~~~~~-~~--~~~g--~~~TGDl~~~~~~g~  429 (545)
T PRK07768        381 -LPPRGVGVIELRGESVTPGYLTMDGFIP-AQ--DADG--WLDTGDLGYLTEEGE  429 (545)
T ss_pred             -CCCCCEEEEEEccCcccccccCCCCCcc-cc--cCCC--eeeccceEEEecCCE
Confidence             5689999999999999999998654433 22  2456  999999999998873

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-46  Score=397.71  Aligned_cols=338  Identities=21%  Similarity=0.228  Sum_probs=278.6

Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      .+.+++++|+++|+..            +++           .+||+||.++++++|..|.+.|+++|++|+++++|+++
T Consensus         9 ~~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~   65 (458)
T PRK09029          9 WRHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPE   65 (458)
T ss_pred             HHHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHH
Confidence            3566899999999975            333           69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      ++++++||+++|++++|+++..+.+++..+++++++++++++.+... +...       ....                 
T Consensus        66 ~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-------~~~~-----------------  120 (458)
T PRK09029         66 TLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL-------TSLH-----------------  120 (458)
T ss_pred             HHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc-------cccc-----------------
Confidence            99999999999999999999999999999999999999999876432 1100       0000                 


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                             ..      ......+....++++++++|||||||.||||+++|++++..+......+ .+.++|+++..+|++
T Consensus       121 -------~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~  186 (458)
T PRK09029        121 -------LQ------LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLF  186 (458)
T ss_pred             -------cc------cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcH
Confidence                   00      0001112344678999999999999999999999999999988888888 889999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |.+++...+.+|..|+++++.+...+.+.           +  .++|.+..+|+++..+......               
T Consensus       187 h~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~---------------  238 (458)
T PRK09029        187 HVSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE---------------  238 (458)
T ss_pred             hhhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc---------------
Confidence            99998777788999999999665444443           5  3789999999999887653210               


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCcc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGST  487 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  487 (576)
                                                          ..++|.+++||+++++.+.+++... |+++++.||+||++...+
T Consensus       239 ------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~  281 (458)
T PRK09029        239 ------------------------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVC  281 (458)
T ss_pred             ------------------------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCccee
Confidence                                                0279999999999999999998865 999999999999987655


Q ss_pred             ccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCe
Q 008134          488 FSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLY  567 (576)
Q Consensus       488 ~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl  567 (576)
                      .....  ...++|+|+++++++|++               |||+|+|+.++.||+++++.+....   .+|  ||+|||+
T Consensus       282 ~~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~~---~~~--~~~TGD~  339 (458)
T PRK09029        282 AKRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLVN---DEG--WFATRDR  339 (458)
T ss_pred             ccCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCcccccccc---CCC--ccCCCCc
Confidence            43322  235799999999999976               8999999999999999998875432   456  9999999


Q ss_pred             ecccCccC
Q 008134          568 VSCDKTLE  575 (576)
Q Consensus       568 g~~d~d~e  575 (576)
                      |++| ||.
T Consensus       340 ~~~~-~g~  346 (458)
T PRK09029        340 GEWQ-NGE  346 (458)
T ss_pred             EEEe-CCE
Confidence            9999 663

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-45  Score=399.63  Aligned_cols=364  Identities=20%  Similarity=0.212  Sum_probs=286.7

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC  208 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  208 (576)
                      +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHhhhcCC-CccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCC
Q 008134          209 DSKQLKKLSAVSSSLK-TIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGST  287 (576)
Q Consensus       209 ~~~~~~~l~~~~~~~~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT  287 (576)
                      +......+.+.....+ ....++..+...             .....+++.......    ......++.++|+||||||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtT  152 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-------------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTT  152 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-------------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCC
Confidence            9887776655544444 344454432211             112345554432111    1223557789999999999


Q ss_pred             CCCceEEechHHHHHHH------HHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECC---cccccccch
Q 008134          288 GLPKGVMITHGNIVATA------AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSS  358 (576)
Q Consensus       288 G~PKgV~~sh~~l~~~~------~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~  358 (576)
                      |.||||+++|.++....      ....... ....++++++.+|++|..++...+.++..|+++++.+   +..+.+   
T Consensus       153 G~PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---  228 (502)
T PRK08276        153 GRPKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALA---  228 (502)
T ss_pred             CCCceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHH---
Confidence            99999999987765322      1122222 2346789999999999999888778999999998844   333434   


Q ss_pred             hhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHH
Q 008134          359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKS  438 (576)
Q Consensus       359 ~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (576)
                              .++++++|++.++|+++..+.+.......                                           
T Consensus       229 --------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------------------  257 (502)
T PRK08276        229 --------LIERYRVTHSQLVPTMFVRMLKLPEEVRA-------------------------------------------  257 (502)
T ss_pred             --------HHHHhCCeEEEehHHHHHHHHhCccccCC-------------------------------------------
Confidence                    49999999999999999988653211000                                           


Q ss_pred             HHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCC
Q 008134          439 VRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGG  517 (576)
Q Consensus       439 ~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~  517 (576)
                        ....+++|.+++||++++.++.+++.+.++..+++.||+||++.++...... ....+++|+|+ +++++|+| +++.
T Consensus       258 --~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~  333 (502)
T PRK08276        258 --RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGN  333 (502)
T ss_pred             --CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCC
Confidence              0011489999999999999999999998899999999999998765544322 23447899999 88999999 5555


Q ss_pred             CcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          518 YKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       518 ~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .   ++.|+.|||+++|+.++.||+++|+.+.+.|  .++|  ||+|||+|++|+||.
T Consensus       334 ~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~~g~  384 (502)
T PRK08276        334 E---LPPGEIGTVYFEMDGYPFEYHNDPEKTAAAR--NPHG--WVTVGDVGYLDEDGY  384 (502)
T ss_pred             C---CcCCCceEEEEECCCccchhcCCHHHHHHHh--cCCC--ceeecceEEEcCCcC
Confidence            4   5689999999999999999999999999999  4456  999999999998874

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-46  Score=417.10  Aligned_cols=406  Identities=19%  Similarity=0.211  Sum_probs=324.8

Q ss_pred             ccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCce
Q 008134           50 QRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYE  129 (576)
Q Consensus        50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~  129 (576)
                      +++++++...|+    ..++   ....+.+...+++++|.+++.++|++.|+..            .+           .
T Consensus       202 ~~~l~ll~~~e~----~~~~---~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~------------~~-----------~  251 (642)
T COG1020         202 LSALPLLLPSER----EVWN---ALAAPIPLRLTIHLLFEEQAATTPDAVALVR------------GG-----------Q  251 (642)
T ss_pred             cccCCCCCHHHH----hhcc---ccccCCCccchHHHHHHHHHHhCCCceeEec------------CC-----------C
Confidence            899999999999    2244   3445556558999999999999999999975            22           2


Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEEC
Q 008134          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (576)
                      .+||+||..+++++|+.|++.|++++++|+++++++++++++++|++|+|++|+|+||.+|.+++.+++++++++.+++.
T Consensus       252 ~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~  331 (642)
T COG1020         252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQ  331 (642)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEec
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 008134          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL  289 (576)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  289 (576)
                      ........    .++.    +.++...                      .......+. .....+++.+|++|||||||+
T Consensus       332 ~~~~~~~~----~~~~----~~~~~~~----------------------~~~~~~~~~-~~~~~~~~~ayiiytsgstg~  380 (642)
T COG1020         332 AHLRVDDV----GLPG----LALDDAL----------------------SEIPDTDPI-PQALLGDALAYIIYTSGSTGQ  380 (642)
T ss_pred             cccccccc----cCCc----ccccccc----------------------ccCCccCcc-cccCCCCCeEEEEEccCCCCC
Confidence            43221100    0000    1111000                      000000110 123456899999999999999


Q ss_pred             CceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccce
Q 008134          290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVS  369 (576)
Q Consensus       290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~  369 (576)
                      ||||+++|+++.+.+.+....+ ..+..|+++...+++|+.+.+.++.++..|+++++.+.....+.     ..+...+.
T Consensus       381 Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~-----~~l~~~~~  454 (642)
T COG1020         381 PKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDP-----AALLELLE  454 (642)
T ss_pred             CCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCH-----HHHHHHHH
Confidence            9999999999999888888888 99999999999999999999999999999999999666655554     22334488


Q ss_pred             eecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEE
Q 008134          370 VLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF  449 (576)
Q Consensus       370 ~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~  449 (576)
                      ++++|++..+|.++..+.......... +                                            ..+.+|.
T Consensus       455 ~~~vt~~~~~p~~~~~~~~~~~~~~~~-~--------------------------------------------~~~~lr~  489 (642)
T COG1020         455 AQGITVLLLVPLLLRLLLLAALAPDLI-S--------------------------------------------PCERLRQ  489 (642)
T ss_pred             HcCCEEEEecHHHHHHHHhchhhcccc-C--------------------------------------------CcccccE
Confidence            999999999999999887641110000 0                                            0024899


Q ss_pred             EEEcCCCCCHHHHHHHHhhh--CCceecccCcccccCCccccCCCCCC--CCccCCCCCCcEEEEeecCCCCCcCCCCCC
Q 008134          450 MICGGAPLSADSQRFINICM--GAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPM  525 (576)
Q Consensus       450 v~~gG~~l~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~--~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g  525 (576)
                      +++||+.++..+...+....  ...+.|.||+||++..++........  ..++|+|++|++++|+| +.+..   +|.|
T Consensus       490 ~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~---~p~g  565 (642)
T COG1020         490 LLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRP---LPLG  565 (642)
T ss_pred             EEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCc---CCCC
Confidence            99999999999988777654  46899999999987766655443333  36999999999999999 44443   6799


Q ss_pred             CCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       526 ~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..||++|.|.++++||+++|+.|+++|+.+    ++|+|||++|++.||.
T Consensus       566 v~gel~i~g~~~a~gy~~~p~lt~~~f~~~----~~y~tgD~~r~~~dg~  611 (642)
T COG1020         566 VPGELYIAGLGLALGYLNRPDLTAERFIAL----RLYRTGDLARPLADGA  611 (642)
T ss_pred             CCeeeEECCcchhhhhcCChhhhHHHhhhc----cCccCCCeeeECCCCe
Confidence            999999999999999999999999999666    5999999999988874

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.9e-45  Score=394.76  Aligned_cols=377  Identities=20%  Similarity=0.141  Sum_probs=284.7

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC  208 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  208 (576)
                      +.+||.||.++++++|++|.++|+++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHhhhcCCCccEEEEecCCCCCC-CCCC--CCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecC
Q 008134          209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEK-DSGV--SGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSG  285 (576)
Q Consensus       209 ~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  285 (576)
                      +....+.+.+...   ....++......... ...+  ...........++++.....    ......++++++++||||
T Consensus        90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence            8877665543321   112222222110000 0000  00000112345555543211    112345789999999999


Q ss_pred             CCCCCceEEechHHH---HHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhcc
Q 008134          286 STGLPKGVMITHGNI---VATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKK  362 (576)
Q Consensus       286 TTG~PKgV~~sh~~l---~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~  362 (576)
                      |||.||+|+++|.+.   ..........+ ++.+++++++..|++|..+....+.++..|+++++.+..   +     ..
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~---~-----~~  233 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRF---D-----PE  233 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCC---C-----HH
Confidence            999999999876654   33333344556 788999999999999998877777788899999884321   1     12


Q ss_pred             CccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHH
Q 008134          363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV  442 (576)
Q Consensus       363 ~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  442 (576)
                      .++..++++++|++.++|+++..++........                                             +.
T Consensus       234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------------------------------~~  268 (509)
T PRK12406        234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRA---------------------------------------------KY  268 (509)
T ss_pred             HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcc---------------------------------------------cC
Confidence            234449999999999999999888652211000                                             00


Q ss_pred             hCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCC
Q 008134          443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTS  521 (576)
Q Consensus       443 ~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~  521 (576)
                      ..+++|.+++||+++++++.+++.+.+++.+++.||+||++.+++..... ...++++|+|+++++++|+| +++..   
T Consensus       269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---  344 (509)
T PRK12406        269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP---  344 (509)
T ss_pred             CCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC---
Confidence            11489999999999999999999998899999999999998765533221 23457899999999999999 55554   


Q ss_pred             CCCCCCceEEEccCcccc-cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          522 DKPMPRGEIVVGGFNVTA-GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       522 ~~~g~~GEl~v~G~~v~~-GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++.|..|||+++|++++. ||+++|+.++..+   .+|  ||+|||+|++|+||.
T Consensus       345 ~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~---~~~--~~~TGD~~~~~~~g~  394 (509)
T PRK12406        345 LPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID---RGG--FITSGDVGYLDADGY  394 (509)
T ss_pred             CCCCCceEEEEECCccccccccCCchhccccc---CCC--CeEEccEEEEcCCce
Confidence            568999999999999875 9999999887765   567  999999999998873

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.7e-45  Score=389.08  Aligned_cols=318  Identities=15%  Similarity=0.119  Sum_probs=255.4

Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE
Q 008134          130 WQTYGEVFDRACSFASGLVNFGH-NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC  208 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~  208 (576)
                      -+.|+||.++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus        19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~   98 (452)
T PRK07445         19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG   98 (452)
T ss_pred             ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence            47899999999999999999998 57999999999999999999999999999999999999999999999999999998


Q ss_pred             CchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCC
Q 008134          209 DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG  288 (576)
Q Consensus       209 ~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG  288 (576)
                      +.+.....               ...                           . .  .......++++++++|||||||
T Consensus        99 ~~~~~~~~---------------~~~---------------------------~-~--~~~~~~~~~~~~~i~~TSGTTG  133 (452)
T PRK07445         99 LDQLKLSH---------------PPP---------------------------L-P--SQGILPNLETGWIMIPTGGSSG  133 (452)
T ss_pred             cCcccccc---------------CCC---------------------------C-C--ccccCCCCCCcEEEEeCCCCCC
Confidence            76532100               000                           0 0  0011235689999999999999


Q ss_pred             CCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccc
Q 008134          289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDV  368 (576)
Q Consensus       289 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i  368 (576)
                      .||||++||+++++.+......+ .+.+ ++.++.+|++|.+|+..++.++..|+++++.+...+...        ....
T Consensus       134 ~PKgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~  203 (452)
T PRK07445        134 QIRFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELP  203 (452)
T ss_pred             CCcEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhh
Confidence            99999999999998888777766 6654 467889999999999888899999999998653222211        1114


Q ss_pred             eeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEE
Q 008134          369 SVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR  448 (576)
Q Consensus       369 ~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr  448 (576)
                      .++++|++.++|++++.+......                                                  ..++||
T Consensus       204 ~~~~~t~~~~vP~~l~~l~~~~~~--------------------------------------------------~l~~l~  233 (452)
T PRK07445        204 PNPSDFFLSLVPTQLQRLLQLRPQ--------------------------------------------------WLAQFR  233 (452)
T ss_pred             hhcCceEEEehHHHHHHHHhhChh--------------------------------------------------hhhcce
Confidence            468899999999999988652100                                                  013899


Q ss_pred             EEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCC
Q 008134          449 FMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP  526 (576)
Q Consensus       449 ~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~  526 (576)
                      .+++||+++++++.++++. +++++++.||+||++..++...+.+  ....++|+|+|+++++|+            .|+
T Consensus       234 ~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~------------~g~  300 (452)
T PRK07445        234 TILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP------------ANQ  300 (452)
T ss_pred             EEEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc------------CCC
Confidence            9999999999999988876 4899999999999976554433322  234689999999999997            245


Q ss_pred             CceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          527 RGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       527 ~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .|||+|+|++++.||++++.        +.+|  ||+|||+|++|+||.
T Consensus       301 ~Gel~v~g~~~~~gY~~~~~--------~~~g--~~~TGDl~~~d~dG~  339 (452)
T PRK07445        301 TGNITIQAQSLALGYYPQIL--------DSQG--IFETDDLGYLDAQGY  339 (452)
T ss_pred             cceEEEeCCccchhhcCCcc--------CCCC--EEECCCEEEEcCCCC
Confidence            79999999999999998643        2356  999999999999874

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.1e-44  Score=382.78  Aligned_cols=334  Identities=23%  Similarity=0.275  Sum_probs=270.8

Q ss_pred             eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECch
Q 008134          132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSK  211 (576)
Q Consensus       132 TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~  211 (576)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCc
Q 008134          212 QLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPK  291 (576)
Q Consensus       212 ~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  291 (576)
                      ......                                 ....+.++................+++++++|||||||.||
T Consensus        81 ~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK  127 (436)
T TIGR01923        81 LEEKDF---------------------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPK  127 (436)
T ss_pred             ccccce---------------------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCc
Confidence            321100                                 00111111111111111123345688999999999999999


Q ss_pred             eEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceee
Q 008134          292 GVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL  371 (576)
Q Consensus       292 gV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  371 (576)
                      +|+++|+++...+......+ +++++|++++.+|++|..++..++.++..|+++++.+...          .++..++++
T Consensus       128 ~v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~----------~~~~~l~~~  196 (436)
T TIGR01923       128 AVPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN----------QLLEMIANE  196 (436)
T ss_pred             EEEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH----------HHHHHHHHh
Confidence            99999999999998888888 8999999999999999999988889999999999965432          133449999


Q ss_pred             cccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEE
Q 008134          372 KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMI  451 (576)
Q Consensus       372 ~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~  451 (576)
                      ++|++.++|+++..+......                                                   .+++|.++
T Consensus       197 ~~t~~~~~P~~l~~l~~~~~~---------------------------------------------------~~~l~~~~  225 (436)
T TIGR01923       197 RVTHISLVPTQLNRLLDEGGH---------------------------------------------------NENLRKIL  225 (436)
T ss_pred             CCeEEEeHHHHHHHHHhCcCC---------------------------------------------------CCceEEEE
Confidence            999999999999887653110                                                   03799999


Q ss_pred             EcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceE
Q 008134          452 CGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEI  530 (576)
Q Consensus       452 ~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl  530 (576)
                      +||+++++++.++++. .++.+++.||+||++...+...... ....++|+|+++++++|.+.+.         ++.|||
T Consensus       226 ~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~---------~~~Gel  295 (436)
T TIGR01923       226 LGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK---------EGHGEI  295 (436)
T ss_pred             ECCCCCCHHHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC---------CCceEE
Confidence            9999999999998876 4999999999999987655443322 1223599999999999944121         257999


Q ss_pred             EEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          531 VVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       531 ~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+|+.++.||+++++.+...+   .+|  ||+|||+|++|+||.
T Consensus       296 ~v~~~~~~~gy~~~~~~~~~~~---~~~--~~~TGD~~~~~~dg~  335 (436)
T TIGR01923       296 MVKGANLMKGYLYQGELTPAFE---QQG--WFNTGDIGELDGEGF  335 (436)
T ss_pred             EEECCccchhhCCChhhhhhhh---cCC--CeeccceEEEcCCCC
Confidence            9999999999999888887655   456  999999999999873

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.2e-44  Score=388.78  Aligned_cols=347  Identities=15%  Similarity=0.095  Sum_probs=246.5

Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh------hhHHHHhhhcCCCccEEEEecCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ------LKKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..      .+.+.++..... .+.++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   79 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG   79 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence            589999999999999999999999999999999999999999999998642      122222222111 2223322111


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCC------CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKR------SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~  309 (576)
                      ....      ........+++++......      ....+....++++++|+|||||||.||||+++|++++........
T Consensus        80 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~  153 (499)
T PLN03051         80 EPVA------VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA  153 (499)
T ss_pred             cccC------CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Confidence            1000      0000012346665532111      011112235689999999999999999999999998877665556


Q ss_pred             hCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      .+ ++.++|++++.+|++|+.++..++.+|..|+++++.+...  +     ...+++.|+++++|++.++|+++..|.++
T Consensus       154 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~--~-----~~~~~~~i~~~~vt~~~~vP~~~~~l~~~  225 (499)
T PLN03051        154 HM-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP--L-----GRGFGKFVQDAGVTVLGLVPSIVKAWRHT  225 (499)
T ss_pred             hc-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC--C-----cHHHHHHHHHhCCcEEEeCHHHHHHHHhc
Confidence            66 7889999999999999999877888999999998853210  0     11234449999999999999999988653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ......                                             +...++||.+++||+++++++.+++++.+
T Consensus       226 ~~~~~~---------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~  260 (499)
T PLN03051        226 GAFAME---------------------------------------------GLDWSKLRVFASTGEASAVDDVLWLSSVR  260 (499)
T ss_pred             Cccccc---------------------------------------------cCCchhheEEEecCCCCCHHHHHHHHHhc
Confidence            110000                                             00113899999999999999988777633


Q ss_pred             --CCceecccCcccccCCccccCC-CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCC--CCceEEEccCcc--ccccc
Q 008134          470 --GAPIGQAYGLTETCAGSTFSEW-DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM--PRGEIVVGGFNV--TAGYF  542 (576)
Q Consensus       470 --~~~l~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g--~~GEl~v~G~~v--~~GY~  542 (576)
                        +++++|.||+||++...+.... .....+++|+|.+|++++|+| ++++.   ++.|  ++|||+|+|+.+  +.|||
T Consensus       261 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~---~~~g~~~~Gel~v~g~~~~~~~gy~  336 (499)
T PLN03051        261 GYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVP---YPDDQPCVGEVALAPPMLGASDRLL  336 (499)
T ss_pred             cccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCC---CCCCCCcceEEEEecCcCCCCcccc
Confidence              4789999999998754332222 222457899999999999999 66665   4466  589999999977  58999


Q ss_pred             CCcccchhhhcccc------cccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNF------HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~------~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++ .++ .|. +.      .+.+||+|||+|++|+||-
T Consensus       337 ~~~-~~~-~~~-~g~~~~~~~~~~~~~TGDlg~~d~dG~  372 (499)
T PLN03051        337 NAD-HDK-VYY-KGMPMYGSKGMPLRRHGDIMKRTPGGY  372 (499)
T ss_pred             CCc-ccc-eee-ecCCccccCCcceeecCCeEEECCCCc
Confidence            765 343 442 21      3456899999999999984

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=355.04  Aligned_cols=397  Identities=21%  Similarity=0.188  Sum_probs=310.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++++|..+++++|+++|+++.+                     +.+++||+|++++++++|+.|+++|++.||.|+++
T Consensus        77 ~ti~~~F~~~vrr~p~k~aii~~~---------------------~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~  135 (649)
T KOG1179|consen   77 RTIAELFLSQVRRQPDKPAIIYEG---------------------PFQSLTFAELDARSNRVANYLHAEGLKAGDVVALL  135 (649)
T ss_pred             CcHHHHHHHHHHhCCCccEEEEeC---------------------CCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEe
Confidence            799999999999999999999853                     12479999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc-cEEEEecCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEKD  240 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~vv~~~~~~~~~~  240 (576)
                      |+|++|++.+.|+++|+|++...||+++..+.+.+-+..++++++|++.+..+.+.++.+.+... -++...+.....  
T Consensus       136 men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~--  213 (649)
T KOG1179|consen  136 MENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP--  213 (649)
T ss_pred             cCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC--
Confidence            99999999999999999999999999999999999999999999999999998888774433322 222222222111  


Q ss_pred             CCCCCCCCCceEeehHHHHHcCCCCCCC---CCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCC
Q 008134          241 SGVSGGISNWTVSSFSEVEKLGKRSPVD---PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  317 (576)
                               ....++.+.++.....+.+   ....+-.++++.||||||||.||..+++|.-...........+ +++++
T Consensus       214 ---------~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~~  283 (649)
T KOG1179|consen  214 ---------DGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTAD  283 (649)
T ss_pred             ---------chHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCcc
Confidence                     1122333333333333322   2445567899999999999999999999999998888788888 99999


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134          318 DVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  393 (576)
                      |+++..+|++|..+... +..+|..|+++++   ++...++++           ..++++|++.-+-.+.+-|+.+...+
T Consensus       284 DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~~~  352 (649)
T KOG1179|consen  284 DVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPPSP  352 (649)
T ss_pred             ceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCCCh
Confidence            99999999999988766 7889999999999   887778777           99999999999999999888765443


Q ss_pred             HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCc-
Q 008134          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP-  472 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~-  472 (576)
                      .+.                                               ..++|..+  |..+.+++++.|.++||.+ 
T Consensus       353 ~er-----------------------------------------------~HkVRla~--GNGLR~diW~~Fv~RFg~~~  383 (649)
T KOG1179|consen  353 EER-----------------------------------------------QHKVRLAY--GNGLRPDIWQQFVKRFGIIK  383 (649)
T ss_pred             hhc-----------------------------------------------CceEEEEe--cCCCCchHHHHHHHHcCCCe
Confidence            332                                               13677766  8889999999999999876 


Q ss_pred             eecccCcccccCCccccCCCCCCCCccCC------CCCCcEEEEeecCCC-------CCcCCCCCCCCceEEE--ccCcc
Q 008134          473 IGQAYGLTETCAGSTFSEWDDPSVGRVGP------PVPCCYIKLVSWDEG-------GYKTSDKPMPRGEIVV--GGFNV  537 (576)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~~~~~vG~------p~~~~~~~ivd~~~~-------~~~~~~~~g~~GEl~v--~G~~v  537 (576)
                      |.+.||+||+.......   +...+.||+      -+.-+++-=+|++++       +.+.+|++|++|.+.-  .-..-
T Consensus       384 IgE~YgaTEgn~~~~N~---d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P  460 (649)
T KOG1179|consen  384 IGEFYGATEGNSNLVNY---DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNP  460 (649)
T ss_pred             EEEEeccccCcceeeee---cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCc
Confidence            88999999976543322   333444543      122223322344433       3445589999996532  22333


Q ss_pred             ---cccccCCcccchhhhcccc--cccceeeeCCeecccCcc
Q 008134          538 ---TAGYFNNPGKTSEVYKVNF--HCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       538 ---~~GY~~~~~~t~~~f~~~~--~g~~~~~TGDlg~~d~d~  574 (576)
                         |.||.+++++|++..++|-  .|+.||+|||+-.+|+.|
T Consensus       461 ~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~G  502 (649)
T KOG1179|consen  461 LRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELG  502 (649)
T ss_pred             hhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCC
Confidence               8999999999988887774  788999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-41  Score=358.75  Aligned_cols=295  Identities=16%  Similarity=0.087  Sum_probs=246.4

Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEEC
Q 008134          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICD  209 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~  209 (576)
                      ++||+||.++++++|+.|. +|+++|++|+++++|+++++++++|++++|++++||++..+.+++..+++++++++++++
T Consensus         8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~   86 (414)
T PRK08308          8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG   86 (414)
T ss_pred             eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence            7999999999999999985 689999999999999999999999999999999999999999999999999999999987


Q ss_pred             chhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCC
Q 008134          210 SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGL  289 (576)
Q Consensus       210 ~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~  289 (576)
                      .....               .                      .              ......++++++|+|||||||.
T Consensus        87 ~~~~~---------------~----------------------~--------------~~~~~~~~~~~~i~~TSGtTG~  115 (414)
T PRK08308         87 ESDFT---------------K----------------------L--------------EAVNYLAEEPSLLQYSSGTTGE  115 (414)
T ss_pred             Ccccc---------------c----------------------c--------------cCCCCCCCCceEEEECCCCCCC
Confidence            63100               0                      0              0012356789999999999999


Q ss_pred             CceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCcc
Q 008134          290 PKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTK  365 (576)
Q Consensus       290 PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~  365 (576)
                      ||||+++|+++.+.+..+...+ .+..+|+++..+|++|.+++.. ++.++..|+++++.   ++..+.+.         
T Consensus       116 PKgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~---------  185 (414)
T PRK08308        116 PKLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI---------  185 (414)
T ss_pred             CcEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH---------
Confidence            9999999999999888888888 8889999999999999999865 78889999999884   33333333         


Q ss_pred             ccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCC
Q 008134          366 GDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGG  445 (576)
Q Consensus       366 ~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  445 (576)
                        ++++++|+++++|+++..+.+....                                                   ..
T Consensus       186 --l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~  212 (414)
T PRK08308        186 --LRNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TF  212 (414)
T ss_pred             --HHHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------cc
Confidence              9999999999999999887652110                                                   02


Q ss_pred             cEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCC
Q 008134          446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM  525 (576)
Q Consensus       446 ~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g  525 (576)
                      +++.+++||+++++++.++|++. +.+++|.||+||+++++...  ......++|+|+|++++++.+ +         .+
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p~~~~~~~~~~-~---------~~  279 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--DMKSHLDLGNPLPHVSVSAGS-D---------EN  279 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeeecC--CCCCCCccCccCCCeEEEEec-C---------CC
Confidence            68889999999999999999877 67899999999998654322  223457899999999999875 2         34


Q ss_pred             CCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          526 PRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       526 ~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..|||++++.                     ++  ||+|||+|++|+||.
T Consensus       280 ~~gel~v~~~---------------------~~--~~~TGDl~~~~~dg~  306 (414)
T PRK08308        280 APEEIVVKMG---------------------DK--EIFTKDLGYKSERGT  306 (414)
T ss_pred             CCceEEEEcC---------------------Cc--eEECCceEEECCCcc
Confidence            5699999752                     34  999999999999874

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-41  Score=355.76  Aligned_cols=398  Identities=18%  Similarity=0.177  Sum_probs=305.2

Q ss_pred             HHHHHHHHh-CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC
Q 008134           86 ALFEQSCKS-HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET  164 (576)
Q Consensus        86 ~~~~~~a~~-~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~  164 (576)
                      .+++++.+. .++.+|++++.          ++.       ++...+||.|+.+++.++|..|.+.|+++||+|++++|+
T Consensus        68 n~~~~~~~~~~~~~~a~~~~~----------~~~-------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm  130 (626)
T KOG1175|consen   68 NCLDRHIKEKGGDKVAIIFEG----------NEG-------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPM  130 (626)
T ss_pred             hhhhhhhhhcCCCCcEEEEEe----------cCC-------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccC
Confidence            344444444 48999999874          221       222449999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhH---------HHHhhhcCCC-----ccEEE
Q 008134          165 CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKK---------LSAVSSSLKT-----IKNVI  230 (576)
Q Consensus       165 s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------l~~~~~~~~~-----~~~vv  230 (576)
                      .+++++++|||.++|++.+++-..+++.++...+++++++++++.+.....         ..+....+..     ...++
T Consensus       131 ~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~  210 (626)
T KOG1175|consen  131 IPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLI  210 (626)
T ss_pred             ChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeE
Confidence            999999999999999999999999999999999999999999998754321         1111111110     01111


Q ss_pred             EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHH-HHHHHHh
Q 008134          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA-TAAAIKT  309 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~  309 (576)
                      + ...              ...+.+++........ .++.+...+|+.+|+|||||||.||||.+++...+- .+.....
T Consensus       211 ~-~~~--------------~~d~~~~~~~~~a~~~-~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~  274 (626)
T KOG1175|consen  211 V-SRR--------------NRDLFWSLELKKASPE-HPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRY  274 (626)
T ss_pred             E-ecc--------------cccccHHHHhhhcCCC-CCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcce
Confidence            1 000              0123455554433322 236778889999999999999999999998776554 4444555


Q ss_pred             hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      .+ .++++|++.++..+.++.+-+. .+.+|++|+++++++-..+ +     ...+++.+.++++|+++..|+.++.+..
T Consensus       275 ~~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~-~-----~~~~~~~v~k~~it~l~t~pt~~r~l~~  347 (626)
T KOG1175|consen  275 HF-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPF-D-----PGRIWKILDKYKVTVLYTAPTAYRLLRR  347 (626)
T ss_pred             ec-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCC-C-----hhhhhhhHhhcceEEEEeccHHHHHHHH
Confidence            56 9999999999999999988877 6679999999999332222 1     2345555999999999999999998866


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      ..........                                             .++||.+.++|||++++..+++.+.
T Consensus       348 ~~~~~~~~~~---------------------------------------------~~sLk~~~S~Gepi~~~~~ew~~~~  382 (626)
T KOG1175|consen  348 LGQEDVTSYS---------------------------------------------LKSLRTCGSVGEPINPEAWEWWKRV  382 (626)
T ss_pred             hccccccccc---------------------------------------------cceEEEEeecCccCCcchHHHHHHh
Confidence            5433222110                                             0279999999999999999999999


Q ss_pred             hCC-ceecccCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCC-CCceEEEccC---cccccc
Q 008134          469 MGA-PIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPM-PRGEIVVGGF---NVTAGY  541 (576)
Q Consensus       469 ~~~-~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g-~~GEl~v~G~---~v~~GY  541 (576)
                      ++. +|++.||+||++..++...+..  ..+++.|.|.+++.+.|+| ++|+.++   +. ..|||+++.+   +.+++|
T Consensus       383 ~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~---~~~~~G~l~~~~~~P~~~~r~~  458 (626)
T KOG1175|consen  383 TGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELP---PSTGNGELRLKPPWPPGMFRTL  458 (626)
T ss_pred             cCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcC---CCCceeEEEEeCCCCccccccc
Confidence            987 5999999999999988777766  6779999999999999999 6777654   33 8999999984   779999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      |+|++.-..++..-..|  +|.|||.|++|+||
T Consensus       459 ~~n~erf~~~yf~k~pg--~y~tGD~~~rd~dG  489 (626)
T KOG1175|consen  459 WGNHERFRAAYFKKFPG--YYFTGDGGRRDEDG  489 (626)
T ss_pred             cCCHHHhhhhhcccCCc--eEEecCceEEcCCc
Confidence            99999544444333467  99999999999997

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=8.1e-29  Score=256.16  Aligned_cols=215  Identities=22%  Similarity=0.291  Sum_probs=165.7

Q ss_pred             CCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCc
Q 008134          271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST  350 (576)
Q Consensus       271 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~  350 (576)
                      ...++++++|+|||||||.||||+++|+++.+.+......+   ...++++..+|++|..++..++.++..|+++++.+.
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            44578999999999999999999999999998877665544   355788999999999999888888999999887332


Q ss_pred             ccccccchhhccCccccceeec--ccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhh
Q 008134          351 LTMTDTSSKIKKGTKGDVSVLK--PTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (576)
Q Consensus       351 ~~l~~~~~~~~~~~~~~i~~~~--~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      ....+.     ..+.+.+++++  .++...+|..+..+..+....                                   
T Consensus       108 ~~~~~~-----~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~-----------------------------------  147 (358)
T PRK07824        108 SAGFDP-----TALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT-----------------------------------  147 (358)
T ss_pred             CCCcCH-----HHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc-----------------------------------
Confidence            221221     22333377777  566677888776654321100                                   


Q ss_pred             hhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEE
Q 008134          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYI  508 (576)
Q Consensus       429 ~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~  508 (576)
                                   ...+++|.+++||+++++++.+++.+. ++++++.||+||++..+.          ..|+|++++++
T Consensus       148 -------------~~~~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v  203 (358)
T PRK07824        148 -------------AALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGCV----------YDGVPLDGVRV  203 (358)
T ss_pred             -------------CCcccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCcC----------cCceeCCCCEE
Confidence                         001489999999999999999988764 899999999999875432          36999999999


Q ss_pred             EEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          509 KLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       509 ~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      +|.|               |||+++|+.++.||+++++.+  .|  ..+|  ||+|||+|++ +||
T Consensus       204 ~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~--~~~g--~~~TGDl~~~-~~g  247 (358)
T PRK07824        204 RVED---------------GRIALGGPTLAKGYRNPVDPD--PF--AEPG--WFRTDDLGAL-DDG  247 (358)
T ss_pred             EecC---------------CEEEEecCccccccCCCcccc--cc--cCCC--ceecccEEEE-eCC
Confidence            9843               899999999999999998754  34  3467  9999999999 554

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.93  E-value=4.8e-25  Score=211.25  Aligned_cols=221  Identities=13%  Similarity=0.080  Sum_probs=159.9

Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCcH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCV  166 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~s~  166 (576)
                      ++.+++++|+++|+++.+          ++       .++.+++||+||.++++++|++|++ +|+++||||+|+++|++
T Consensus         2 ~~~~~~~~p~~~al~~~~----------~~-------~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~   64 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYD----------DA-------TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW   64 (227)
T ss_pred             hhhhhhhCCCCcEEEEEc----------CC-------CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence            567889999999998631          11       0122479999999999999999998 79999999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCC
Q 008134          167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG  246 (576)
Q Consensus       167 ~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~  246 (576)
                      +++++++|++++|++++|++             +++++++|++.+..+.+..     +  +.++.+.......... ...
T Consensus        65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~-~~~  123 (227)
T TIGR03089        65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAAG-----S--GEVVALSLDPLGRRVA-GEL  123 (227)
T ss_pred             HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhccc-----C--CceEEEeccccccCCC-CCC
Confidence            99999999999999999995             7899999999887766431     1  2333332110000000 000


Q ss_pred             CCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecCh
Q 008134          247 ISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL  326 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl  326 (576)
                      .  ....++.+..........+.....++|++.|+||||+         +|++++...    ..+ +++++|+++ .+|+
T Consensus       124 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl  186 (227)
T TIGR03089       124 P--PGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAW  186 (227)
T ss_pred             C--CcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCC
Confidence            1  1123565555432222221214567999999999985         666665544    444 789999999 9999


Q ss_pred             HHHHHHHH-HHHHHHhCceEEE---CCcccccccchhhccCccccceeeccc
Q 008134          327 AHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPT  374 (576)
Q Consensus       327 ~~~~~~~~-~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t  374 (576)
                      +|..|+.. ++.+|..|+++++   +++..+++.           |+++|||
T Consensus       187 ~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT  227 (227)
T TIGR03089       187 TDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT  227 (227)
T ss_pred             CchHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence            99999875 7889999999999   666666666           8999886

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.92  E-value=2.3e-24  Score=227.73  Aligned_cols=224  Identities=17%  Similarity=0.127  Sum_probs=159.9

Q ss_pred             CCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH---HhhCCCCCCCcEEEEecChHHHHH-HHHHHHHHHhCceEEEC
Q 008134          273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI---KTLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCAIGYG  348 (576)
Q Consensus       273 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~-~~~~~~~l~~G~~~~~~  348 (576)
                      .++++++++|||||||.||+|.++|.++.......   ...+ ++.++|++++..++.+..+ +...+.++..|++++..
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            45678999999999999999999999987654332   3345 7889999988766554333 33345677889888774


Q ss_pred             CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhh
Q 008134          349 STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (576)
Q Consensus       349 ~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                      +....        ..+++.|++++||+++++|+++..|.+.........                               
T Consensus       152 ~~~~~--------~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~-------------------------------  192 (422)
T TIGR02155       152 SGGQT--------EKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDP-------------------------------  192 (422)
T ss_pred             CCCCH--------HHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCc-------------------------------
Confidence            33211        123444999999999999999998876432210000                               


Q ss_pred             hhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCC--Cc
Q 008134          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP--CC  506 (576)
Q Consensus       429 ~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~--~~  506 (576)
                                    ...++|.+++|||++++++.+.+++.+|+++++.||+||+++.........   ...|.+++  +.
T Consensus       193 --------------~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~---~~~g~~~~~~~~  255 (422)
T TIGR02155       193 --------------AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE---TQDGLHIWEDHF  255 (422)
T ss_pred             --------------ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc---cCCCceEecCee
Confidence                          003799999999999999999999999999999999999853221111111   12344443  56


Q ss_pred             EEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCc
Q 008134          507 YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKT  573 (576)
Q Consensus       507 ~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d  573 (576)
                      .+.|+|++++..   +++|+.|||+++|.            ++++|   |.+  ||+|||+|+++++
T Consensus       256 ~~eivd~~~g~~---v~~Ge~Gelvvt~~------------~~~~~---p~~--ry~TGDl~~~~~~  302 (422)
T TIGR02155       256 YPEIIDPHTGEV---LPDGEEGELVFTTL------------TKEAL---PVI--RYRTRDLTRLLPG  302 (422)
T ss_pred             EEEEECCCCCCC---CCCCCeeEEEEecC------------Ccccc---cee--eEEcCcEEEEECC
Confidence            778999666654   56899999999973            44555   566  9999999999764

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=219.47  Aligned_cols=409  Identities=13%  Similarity=0.098  Sum_probs=274.4

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i  160 (576)
                      .++.++++.+++++||.+|+...           +++      ..+..++||++|..++.+++.+|++. -+++||.|++
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L  832 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL  832 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence            68999999999999999999875           444      34456899999999999999999987 5899999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCC------HHHHHHHHhccCceEEEECchhhhHHHHhhh--c--CCCccEEE
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLG------EDALIHSLNETQVTTLICDSKQLKKLSAVSS--S--LKTIKNVI  230 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~--~--~~~~~~vv  230 (576)
                      +.++++|++++++||+.+|.+++|+.|...      -+.+..|++..++.+|+++......+..--.  .  ......++
T Consensus       833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~  912 (1363)
T KOG3628|consen  833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL  912 (1363)
T ss_pred             EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence            999999999999999999999999988753      3568889999999999999876655443210  0  01111122


Q ss_pred             EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh
Q 008134          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  310 (576)
                      .++....           . .......+.  ......++....++.+||+-|.--++|.--||.++|.++++.+....+.
T Consensus       913 ~~~~~~~-----------t-~~k~~~~~~--k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~  978 (1363)
T KOG3628|consen  913 VLPKLPE-----------T-IRKRKKNIK--KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKET  978 (1363)
T ss_pred             cccccch-----------h-hhhhhhhhh--ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHH
Confidence            1111100           0 000011111  1112223344567889999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      + .+.+..-++...+.+...|+.. .+...+.|.+.++..|..+...    +..+...|.++++.-++.+-..+..+..+
T Consensus       979 ~-~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn----psLll~~i~~~kvkDt~~~~~tln~c~~~ 1053 (1363)
T KOG3628|consen  979 C-QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN----PSLLLQIISQYKVKDTYPTYSTLNLCQKG 1053 (1363)
T ss_pred             H-ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC----HHHHHHHHhcccccccchhHHHHHHHHhc
Confidence            8 8888888888888877777765 5677899999999888888776    45566679999999998888888777665


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ...+.+....                                        +....++ ..++..-+.....+..-|.+.+
T Consensus      1054 l~t~~enl~~----------------------------------------~gnn~s~-s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1054 LETSVENLSK----------------------------------------RGNNTSS-SIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred             cccccchhhh----------------------------------------hhccccc-ceeeecCCccHHHHHHHHHHHH
Confidence            4433222110                                        0000011 2222233333333444333332


Q ss_pred             ---CCc---ee-------------cccCcccccCCcccc-CCCCC-------------CCCccCCCCCCcEEEEeecCCC
Q 008134          470 ---GAP---IG-------------QAYGLTETCAGSTFS-EWDDP-------------SVGRVGPPVPCCYIKLVSWDEG  516 (576)
Q Consensus       470 ---~~~---l~-------------~~YG~TE~~~~~~~~-~~~~~-------------~~~~vG~p~~~~~~~ivd~~~~  516 (576)
                         |..   +-             +.|--.|-+....-. ..+..             .....|...+++++.|++||+.
T Consensus      1093 a~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk 1172 (1363)
T KOG3628|consen 1093 AAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETK 1172 (1363)
T ss_pred             HHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccc
Confidence               110   11             223222221110000 00000             0123478889999999998887


Q ss_pred             CCcCCCCCCCCceEEEccCcccccccCCcc-cchhhhc-----ccccccceeeeCCeecc
Q 008134          517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPG-KTSEVYK-----VNFHCVWMLCICLYVSC  570 (576)
Q Consensus       517 ~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~-~t~~~f~-----~~~~g~~~~~TGDlg~~  570 (576)
                      +.   |..|+.||||+.|.+-+.+|++--+ ...+.|-     .+-+|..|-||||+|++
T Consensus      1173 ~p---c~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl 1229 (1363)
T KOG3628|consen 1173 GP---CRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFL 1229 (1363)
T ss_pred             cc---cccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeee
Confidence            65   6799999999999999999886411 2222220     01135679999999987

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.88  E-value=4.4e-22  Score=205.87  Aligned_cols=164  Identities=18%  Similarity=0.148  Sum_probs=123.3

Q ss_pred             CCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCC--CCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCc-
Q 008134          275 NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGST-  350 (576)
Q Consensus       275 ~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~-  350 (576)
                      +..++++|||||||.||||+++|+++++.+..+...+ ++.  +.|++++.+|++|.+++.. ++.++..|+++++... 
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            4578999999999999999999999999888877776 654  3468999999999988754 6788999999988432 


Q ss_pred             --ccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhh
Q 008134          351 --LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLER  428 (576)
Q Consensus       351 --~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (576)
                        ..+++.           ++.  .|+++++|++++.+.+..    .                                 
T Consensus       174 ~~~~~l~~-----------i~~--~t~~~~~P~~l~~l~~~~----~---------------------------------  203 (386)
T TIGR02372       174 PASGIMRH-----------ARP--GDLIVGTPFIWEQLADLD----Y---------------------------------  203 (386)
T ss_pred             ChHHHHHh-----------hcc--CCEEEECcHHHHHHHhhC----c---------------------------------
Confidence              222222           433  289999999999886521    0                                 


Q ss_pred             hhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC-ceecccCcccccCCccccCCCCCCCCccCCCCCCcE
Q 008134          429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCY  507 (576)
Q Consensus       429 ~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~  507 (576)
                                    ..+++|. ++||+++++++.+.+++. +. ++++.||+||++++++...     +...|+|+|+.+
T Consensus       204 --------------~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~  262 (386)
T TIGR02372       204 --------------RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLA  262 (386)
T ss_pred             --------------CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCcc
Confidence                          0136775 678999999999999876 54 6999999999987554321     234678888776


Q ss_pred             EEE
Q 008134          508 IKL  510 (576)
Q Consensus       508 ~~i  510 (576)
                      +++
T Consensus       263 ~~~  265 (386)
T TIGR02372       263 CFA  265 (386)
T ss_pred             ccC
Confidence            543

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.86  E-value=1e-20  Score=200.45  Aligned_cols=197  Identities=16%  Similarity=0.134  Sum_probs=143.5

Q ss_pred             CCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEE
Q 008134          272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY  347 (576)
Q Consensus       272 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~  347 (576)
                      ...++++.|.|||||||.||+|.+||+++.........   .. ++.++|+++...++.+..+... .+.++..|++++.
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~-G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQ-GFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            34678899999999999999999999998776554433   24 7889999999999888766544 3456778887665


Q ss_pred             CCc-ccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCch
Q 008134          348 GST-LTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGL  426 (576)
Q Consensus       348 ~~~-~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (576)
                      ... ...           +..|+++++|.+.++|+.+..+.+........  +                           
T Consensus       162 ~~~~~~~-----------~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~--~---------------------------  201 (445)
T TIGR03335       162 EGKCTFP-----------IRIIESYRPTGIVASVFKLLRLARRMKAEGID--P---------------------------  201 (445)
T ss_pred             CCchhHH-----------HHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC--c---------------------------
Confidence            332 222           23389999999999999887776543221000  0                           


Q ss_pred             hhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCC--C
Q 008134          427 ERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPV--P  504 (576)
Q Consensus       427 ~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~  504 (576)
                                      ...++|.+++|||++++++.+.+++.+|+++++.||+||++....+.   .    ..|..+  +
T Consensus       202 ----------------~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~---~----~~g~h~~~d  258 (445)
T TIGR03335       202 ----------------AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQ---A----VAGLHVPED  258 (445)
T ss_pred             ----------------ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEec---C----CCCccccCC
Confidence                            00379999999999999999999999999999999999985322111   1    124433  4


Q ss_pred             CcEEEEeecCCCCCcCCCCCCCCceEEEccC
Q 008134          505 CCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF  535 (576)
Q Consensus       505 ~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~  535 (576)
                      .+.+.|+|++++..   +++|+.|||++.+-
T Consensus       259 ~~~vEIvDp~~~~~---vp~Ge~GELvvT~L  286 (445)
T TIGR03335       259 LVHLDVYDPRHQRF---LPDGECGRIVLTTL  286 (445)
T ss_pred             ceEEEEEcCCCCCC---CcCCCceEEEEEec
Confidence            57889999655443   57999999999984

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=8.9e-19  Score=193.63  Aligned_cols=329  Identities=18%  Similarity=0.158  Sum_probs=208.3

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      -+++..|.+.+.+.|...+..+..+.+.               .+.....||++....++.+++.|...|.-+|+.|+++
T Consensus        36 g~~~~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~  100 (1032)
T KOG1178|consen   36 GTLEDSFRRELAEAPENTGHVIIPTASE---------------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIY  100 (1032)
T ss_pred             cchhhHHHHHHhhcccCCCceEeecccc---------------cccccchhhhhhhcccchhHHHhhhcccccCceEEEe
Confidence            4788899999999999999887654321               1334579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCC----HHHHHHHHhccCc-eEEEECchhhhHHHHhhhc-CCCccEEEEecCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLG----EDALIHSLNETQV-TTLICDSKQLKKLSAVSSS-LKTIKNVIYFEND  235 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~----~~~l~~~l~~~~~-~~vi~~~~~~~~l~~~~~~-~~~~~~vv~~~~~  235 (576)
                      +..+.++++..++++++|..+++++|.++    ++++..+...... ..-+...  .+.+...... .+.. .+.     
T Consensus       101 ~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~--l~i~~~~~~~~~~~~-sv~-----  172 (1032)
T KOG1178|consen  101 MLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRR--LNIIDILLNSLFPKL-SVE-----  172 (1032)
T ss_pred             ccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhh--hhhHHHHhhcccccc-chh-----
Confidence            99999999999999999999999999999    3322222111110 0011110  1111111100 0000 000     


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCC
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG  315 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  315 (576)
                                   .. .-+|..+......  ....-..+|..+++.||||+||.||||.-+|..+.+...|+...+ .++
T Consensus       173 -------------~~-~~~f~~~~~~~~~--r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~t  235 (1032)
T KOG1178|consen  173 -------------TI-ADSFQMVLHNEDT--REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PPT  235 (1032)
T ss_pred             -------------hc-cchhhhhhccCCC--cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-CcC
Confidence                         00 1122222211111  111344567789999999999999999999999999999999988 888


Q ss_pred             CCcEEEEecChHHHHHHHHHH-HHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          316 RSDVYLAYLPLAHVLELAAES-IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       316 ~~d~~l~~~pl~~~~~~~~~~-~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      .++++-.....+++....... ..|+.|+.+..+.+..- +.    +..+...+++++++..+.+|++.+.++.......
T Consensus       236 ~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~-~~----~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~  310 (1032)
T KOG1178|consen  236 GSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIK-DT----PGQLASTLERYGITVSHLLPAMCQLLLAILTTSL  310 (1032)
T ss_pred             ccchhhhhheeecccchHHHHhhHhhcCceeecccccCc-cc----hhhHHHHHHhhhheeeeechhhhhhhhhhcCcch
Confidence            888763333343444444444 44666665655222111 00    1223444999999999999999888866432110


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHh--CCcEEEEEEcCCCCCHHHHHHHHhhh-CC
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVL--GGRIRFMICGGAPLSADSQRFINICM-GA  471 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~  471 (576)
                      .          +.. +  ..                       .+.+..  -+.|+...++|++....+...+...+ -.
T Consensus       311 ~----------~l~-~--~~-----------------------~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~  354 (1032)
T KOG1178|consen  311 P----------LLE-H--AF-----------------------SLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEI  354 (1032)
T ss_pred             h----------hhh-h--hh-----------------------hcccccccchhheeeeecCCccchhhhhhhhhcccce
Confidence            0          000 0  00                       000000  03789999999999999877554443 22


Q ss_pred             ceecccCcccccCCccccCC
Q 008134          472 PIGQAYGLTETCAGSTFSEW  491 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~  491 (576)
                      -...-|++++..+..+....
T Consensus       355 ~~~~~y~s~~~~~~~s~~~~  374 (1032)
T KOG1178|consen  355 FFGLPYLSTDPTGLVSYDDF  374 (1032)
T ss_pred             eeeecccCCCCccceeHHhh
Confidence            23344999998887765543

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.66  E-value=2e-15  Score=152.89  Aligned_cols=224  Identities=18%  Similarity=0.088  Sum_probs=156.9

Q ss_pred             CCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC--CCCCCCcEEEEecChHH-HHHHHHHHHHHHhCceEEE
Q 008134          271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI--PNPGRSDVYLAYLPLAH-VLELAAESIMLCAGCAIGY  347 (576)
Q Consensus       271 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~~-~~~~~~~~~~l~~G~~~~~  347 (576)
                      .+..++...|--||||||+|+-+.+++..+......+...+  .+...+|++....-+.. ..++..-+++--.|++++-
T Consensus        86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            34456677788999999999999999998877666555544  37888898776655322 2233333444446666655


Q ss_pred             CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchh
Q 008134          348 GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE  427 (576)
Q Consensus       348 ~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (576)
                      .++...        ...++.+..+++|++.++|+.+..|.+...+.....                              
T Consensus       166 ~~~g~~--------~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~------------------------------  207 (438)
T COG1541         166 ISGGNT--------ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP------------------------------  207 (438)
T ss_pred             cCCccH--------HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh------------------------------
Confidence            433211        223444999999999999999999988765532100                              


Q ss_pred             hhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCC--CCC
Q 008134          428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP--VPC  505 (576)
Q Consensus       428 ~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p--~~~  505 (576)
                                     .-.+||.+++|+|++++++.+.++..+|+..++.||+||..+.. ...   +.... |-.  -.+
T Consensus       208 ---------------~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g-~~e---C~~~~-glhi~eD~  267 (438)
T COG1541         208 ---------------DKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPG-AGE---CTERN-GLHIWEDH  267 (438)
T ss_pred             ---------------hhcceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCc-ccc---ccccc-CCCcchhh
Confidence                           00389999999999999999999999999999999999997764 111   11111 332  355


Q ss_pred             cEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccC
Q 008134          506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDK  572 (576)
Q Consensus       506 ~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~  572 (576)
                      .-+.|+||+++.+   ++.|..|||.+..-.            ++.+   |=  -=|||||++++.+
T Consensus       268 ~~~Ei~dP~t~e~---l~dge~GelV~T~L~------------~~~~---Pl--IRYrtgDit~i~~  314 (438)
T COG1541         268 FIFEIVDPETGEQ---LPDGERGELVITTLT------------KEGM---PL--IRYRTGDITVILS  314 (438)
T ss_pred             ceeeeecCCcCcc---CCCCCeeEEEEEecc------------ccCc---ce--EEEEcCCeeEecc
Confidence            6788999999887   458999999998732            1222   10  0389999998865

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.61  E-value=9.2e-15  Score=157.40  Aligned_cols=407  Identities=15%  Similarity=0.110  Sum_probs=260.8

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHH-HHHHCCCCCCCEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFAS-GLVNFGHNVDTRAA  159 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~-~L~~~Gv~~gd~V~  159 (576)
                      ...+..+++..-.+++..+|.++-           |.+       |....+||..+..++.+.|+ .|-+-|..++|+|.
T Consensus        93 ~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vv  154 (1363)
T KOG3628|consen   93 LTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVV  154 (1363)
T ss_pred             hcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEE
Confidence            456777777777888888998885           333       33578999999999999999 55566999999999


Q ss_pred             EEcCCc--HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134          160 ILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       160 i~~~~s--~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~  237 (576)
                      ++...+  .++++..++|.-+|.+++|+.+..+.+++..+++....+++++.......+..........+.+-+.+..  
T Consensus       155 L~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~--  232 (1363)
T KOG3628|consen  155 LYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTN--  232 (1363)
T ss_pred             EEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcc--
Confidence            999877  7999999999999999999999999999999999999999999887665554432100000000000000  


Q ss_pred             CCCCCCCCCCCCce-EeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-----
Q 008134          238 EKDSGVSGGISNWT-VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-----  311 (576)
Q Consensus       238 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----  311 (576)
                                 .+. .+.++.       ..  .+..... ..||-||++++|.--||+++|+ ++.+.+.+....     
T Consensus       233 -----------~~k~~~~~~k-------~~--~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa  290 (1363)
T KOG3628|consen  233 -----------DFKGNYTKDK-------IK--KPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPA  290 (1363)
T ss_pred             -----------cccceeehhh-------cc--CCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChH
Confidence                       000 000000       00  1111122 7999999999999999999999 665544332221     


Q ss_pred             --------------CCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEE
Q 008134          312 --------------PNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLM  376 (576)
Q Consensus       312 --------------~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~  376 (576)
                                    .+....++++.......-.|+.. ++.+++.|.|....+.+.+...     ..+...+.++|.+++
T Consensus       291 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~p-----G~~~~l~~k~R~~~~  365 (1363)
T KOG3628|consen  291 RFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPP-----GLIANLITKYRATWS  365 (1363)
T ss_pred             HHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCC-----cchhhhhccceeEEE
Confidence                          13344556666655555556555 6788999999888666544333     456666889999998


Q ss_pred             EecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCC
Q 008134          377 AAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP  456 (576)
Q Consensus       377 ~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~  456 (576)
                      ..--..+.......+.                                   .|..+ +.|.+.+....+++|.+.+.=..
T Consensus       366 ltd~~~Lkq~~~ny~~-----------------------------------~p~a~-~s~~k~~t~d~sslk~C~Vtc~~  409 (1363)
T KOG3628|consen  366 LTDYAGLKQPVYNYQE-----------------------------------DPKAT-LSFKKYKTPDLSSLKGCMVTCTA  409 (1363)
T ss_pred             eecccccCcccccccC-----------------------------------Ccccc-cchhhccCCCccceeeeEEeeee
Confidence            8654444433221110                                   00000 11222222344789998888888


Q ss_pred             CCHHHHHHHHhh----hCCc------------------eecccCcccccCCccccCCCC--C------------------
Q 008134          457 LSADSQRFINIC----MGAP------------------IGQAYGLTETCAGSTFSEWDD--P------------------  494 (576)
Q Consensus       457 l~~~~~~~~~~~----~~~~------------------l~~~YG~TE~~~~~~~~~~~~--~------------------  494 (576)
                      +..+..+-..++    .|..                  .+..=+.+|.+..+.-.+...  .                  
T Consensus       410 vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~  489 (1363)
T KOG3628|consen  410 VDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVE  489 (1363)
T ss_pred             cchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEE
Confidence            887754322221    1211                  112222244433322111100  0                  


Q ss_pred             ----------CCCccCCCCCC-cEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc-------
Q 008134          495 ----------SVGRVGPPVPC-CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF-------  556 (576)
Q Consensus       495 ----------~~~~vG~p~~~-~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~-------  556 (576)
                                ....+|...|+ +.+.|++++....   |.++++|||||.++++..+||.-+..|...|...+       
T Consensus       490 v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~L---C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~  566 (1363)
T KOG3628|consen  490 VDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQL---CKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKP  566 (1363)
T ss_pred             EcchhhhhhcCccccceecccceEEEEeCCCcccc---cccCcceeEEEecCCcccceeeccccccceEEeeeccccCCC
Confidence                      11235555544 5677777554433   78999999999999999999999999998885332       


Q ss_pred             -cccceeeeCCeecccCc
Q 008134          557 -HCVWMLCICLYVSCDKT  573 (576)
Q Consensus       557 -~g~~~~~TGDlg~~d~d  573 (576)
                       ...++.|||-+|++...
T Consensus       567 ~~n~~FmRtGLlGFv~~g  584 (1363)
T KOG3628|consen  567 PSNVPFMRTGLLGFVHNG  584 (1363)
T ss_pred             CccchhhhhcceeeeeCC
Confidence             23579999999998654

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.12  E-value=6.6e-10  Score=115.74  Aligned_cols=146  Identities=13%  Similarity=0.096  Sum_probs=95.3

Q ss_pred             EEEEeecCCCCCCceEEechHHHHHHHHHHHhh-C-CCCCCCcEEEEecC-hHHHHHHHHHHHHHHhCce-EEECCcccc
Q 008134          278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL-I-PNPGRSDVYLAYLP-LAHVLELAAESIMLCAGCA-IGYGSTLTM  353 (576)
Q Consensus       278 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~-~~~~~~d~~l~~~p-l~~~~~~~~~~~~l~~G~~-~~~~~~~~l  353 (576)
                      ..+..||||||.|-.+.++.............. . .++..++++..+.. -.+.      +..+..... +-.++..  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~l------y~~~~~~~~~~~~~~l~--  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNL------YQSVNNRWISLDFFDLL--  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhH------HHHHHhccceeeecCCC--
Confidence            467789999999999999988664333222221 1 24556666665521 1111      111222111 2222221  


Q ss_pred             cccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHH
Q 008134          354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDA  433 (576)
Q Consensus       354 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (576)
                       +.    ....+..|.+++|+++.+.|+.+..|+.........                                     
T Consensus       174 -~~----~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-------------------------------------  211 (430)
T TIGR02304       174 -AP----FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-------------------------------------  211 (430)
T ss_pred             -cC----HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-------------------------------------
Confidence             11    122344599999999999999999998754331100                                     


Q ss_pred             HHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCC
Q 008134          434 IVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG  485 (576)
Q Consensus       434 ~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~  485 (576)
                                 .+++.++++||+++++..+.+++.||+++++.||+|| +.+
T Consensus       212 -----------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       212 -----------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFL  251 (430)
T ss_pred             -----------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hhe
Confidence                       2689999999999999999999999999999999999 443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.23  E-value=3e-05  Score=79.27  Aligned_cols=206  Identities=16%  Similarity=0.140  Sum_probs=107.4

Q ss_pred             CCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC---CCCCC-CcEEEEecChHHH---HH--HHHHHHHHHhCc
Q 008134          273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI---PNPGR-SDVYLAYLPLAHV---LE--LAAESIMLCAGC  343 (576)
Q Consensus       273 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~-~d~~l~~~pl~~~---~~--~~~~~~~l~~G~  343 (576)
                      .++++..++-||||||.|--+.+.+..+..+...+...+   ..... .-.++...|-...   .+  .......+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677888899999998666666666665554443332   12221 1233443343221   11  111222233444


Q ss_pred             eEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCcccc
Q 008134          344 AIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGA  423 (576)
Q Consensus       344 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (576)
                      ...+ +...+ +.. .....+...-.+.++..+++.|.++-.++..+++.....                          
T Consensus       167 ~~~l-~~~~l-d~~-~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~--------------------------  217 (365)
T PF04443_consen  167 RFAL-DNDEL-DLE-GLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF--------------------------  217 (365)
T ss_pred             eeee-cCCcc-CHH-HHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc--------------------------
Confidence            4333 21111 110 011112222356778899998887766655433211100                          


Q ss_pred             CchhhhhHHHHHHHHHHHHhCCcEEEEEEcC------CCCCHH-HHHHHHhhhCC----ceecccCcccccCCccccCCC
Q 008134          424 WGLERMLWDAIVFKSVRAVLGGRIRFMICGG------APLSAD-SQRFINICMGA----PIGQAYGLTETCAGSTFSEWD  492 (576)
Q Consensus       424 ~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG------~~l~~~-~~~~~~~~~~~----~l~~~YG~TE~~~~~~~~~~~  492 (576)
                                        .+.+..+.+-.||      +.++.+ +.+.+++.||+    .+++.||+||......-..  
T Consensus       218 ------------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~--  277 (365)
T PF04443_consen  218 ------------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECG--  277 (365)
T ss_pred             ------------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCC--
Confidence                              0002344555554      457654 67788888898    6899999999654322110  


Q ss_pred             CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCc
Q 008134          493 DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN  536 (576)
Q Consensus       493 ~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~  536 (576)
                         .+.  .++|.- +.|.|+++..   +++.|.+|-|-|-.+.
T Consensus       278 ---~~~--~~~p~w-V~iRDp~tl~---~~~~Ge~Gli~vidl~  312 (365)
T PF04443_consen  278 ---HGH--FHVPPW-VIIRDPETLE---PLPPGETGLIQVIDLA  312 (365)
T ss_pred             ---CCc--ccCCCe-EEEECCCCCc---CCCCCCeeEEEEEccc
Confidence               011  122222 7777876644   3778999999887764

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.33  E-value=0.021  Score=61.87  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=31.9

Q ss_pred             ceEeehHHHHHcCC---CCCCCCCCCCCCCeEEEEeecCCCCC-CceEEechHHHHH
Q 008134          250 WTVSSFSEVEKLGK---RSPVDPSLPSQNGVAVIMYTSGSTGL-PKGVMITHGNIVA  302 (576)
Q Consensus       250 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~-PKgV~~sh~~l~~  302 (576)
                      +.+.+++++...-.   ..+  ..-..++.+.+..-||||||. ||-+.+|.+.+-.
T Consensus        54 VPi~~Yed~~pyIeR~~~Ge--~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   54 VPITDYEDYRPYIERIAEGE--ENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             S--BEHHHHHHHHHHHHTT----CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCccHHHHHHHHHHHhcCC--CCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            44566666643211   111  123456678899999999999 9999999887755

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=96.06  E-value=0.22  Score=54.12  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=33.5

Q ss_pred             CCCCeEEEEeecCCCC-CCceEEechHHHHHHHHHHH-------hhCCCCCCCcEEEE
Q 008134          273 SQNGVAVIMYTSGSTG-LPKGVMITHGNIVATAAAIK-------TLIPNPGRSDVYLA  322 (576)
Q Consensus       273 ~~~~~a~i~~TSGTTG-~PKgV~~sh~~l~~~~~~~~-------~~~~~~~~~d~~l~  322 (576)
                      .++.+.+..-|||||| ++|-+.+|++.+-.....+.       ...+++..+..+..
T Consensus        87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~~Gk~~~~  144 (606)
T PLN02247         87 SAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLDQGKGMYL  144 (606)
T ss_pred             CCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcccCcEEEE
Confidence            3667789999999995 89999999987644322111       11256666665544

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=95.58  E-value=0.47  Score=51.62  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=25.4

Q ss_pred             CCCCeEEEEeecCCCC-CCceEEechHHHHH
Q 008134          273 SQNGVAVIMYTSGSTG-LPKGVMITHGNIVA  302 (576)
Q Consensus       273 ~~~~~a~i~~TSGTTG-~PKgV~~sh~~l~~  302 (576)
                      .++.+.+..-|||||| ++|-+.++++.+-.
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            4566778999999997 69999999997765

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=94.45  E-value=1.8  Score=47.50  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             CCCCCeEEEEeecCCC-CCCceEEechHHHH
Q 008134          272 PSQNGVAVIMYTSGST-GLPKGVMITHGNIV  301 (576)
Q Consensus       272 ~~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~  301 (576)
                      ..++.+.+..-||||| |++|-+.+|.+.+-
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            3467778899999999 89999999997664

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.38  E-value=0.53  Score=48.93  Aligned_cols=91  Identities=14%  Similarity=0.013  Sum_probs=76.9

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (576)
                      --+|+.++...+..+|+.|...|..+||+|.++..-+..  -.-..+|+.++|+.++|+.+ -..++...++++.++.++
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcEE
Confidence            458999999999999999999999999999888773322  26788999999999999988 455677789999999999


Q ss_pred             EECchhhhHHHHhh
Q 008134          207 ICDSKQLKKLSAVS  220 (576)
Q Consensus       207 i~~~~~~~~l~~~~  220 (576)
                      .+.++..-.+.+..
T Consensus       187 ~~tps~~l~lae~~  200 (438)
T COG1541         187 AATPSYLLYLAEEA  200 (438)
T ss_pred             EEChHHHHHHHHHH
Confidence            99999876666555

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=88.77  E-value=4.9  Score=42.37  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=68.4

Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH--HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV--EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI  207 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~--~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  207 (576)
                      .+|..++......++..+...|+++||++......+.  ......++..+.|+..+++++.. .+.+...|++.++.+++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            4678888777777788888889999999887665443  22334677889999999998764 47788999999999999


Q ss_pred             ECchhhhHHHH
Q 008134          208 CDSKQLKKLSA  218 (576)
Q Consensus       208 ~~~~~~~~l~~  218 (576)
                      +.+.....+.+
T Consensus       173 ~~Ps~l~~L~~  183 (422)
T TIGR02155       173 VTPSYMLNLLE  183 (422)
T ss_pred             EcHHHHHHHHH
Confidence            99987766544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=87.94  E-value=0.24  Score=50.90  Aligned_cols=18  Identities=11%  Similarity=-0.330  Sum_probs=15.1

Q ss_pred             ccccceeeeCCeecc-cCccC
Q 008134          556 FHCVWMLCICLYVSC-DKTLE  575 (576)
Q Consensus       556 ~~g~~~~~TGDlg~~-d~d~e  575 (576)
                      .+|  ||+|||+|++ |+||-
T Consensus       207 ~dg--W~~TGDlg~~~d~dG~  225 (365)
T PRK09188        207 SRI--WLATGKKVYNFITRGL  225 (365)
T ss_pred             cCc--EEeCCCEEEEEcCCCe
Confidence            367  9999999998 68873

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.74  E-value=6.7  Score=41.73  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             EeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH--HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEE
Q 008134          130 WQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE--WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLI  207 (576)
Q Consensus       130 ~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~--~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi  207 (576)
                      .+|+.++...+..++..+...|+++||++.++.+-+..  .....+++.+.|+.++|...   .+....++++.++.+++
T Consensus       105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~  181 (445)
T TIGR03335       105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV  181 (445)
T ss_pred             eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence            57999999888888988888999999999998876643  23456788999998887653   23456788999999998


Q ss_pred             ECchhhhHH
Q 008134          208 CDSKQLKKL  216 (576)
Q Consensus       208 ~~~~~~~~l  216 (576)
                      +.....-.+
T Consensus       182 ~~ps~ll~L  190 (445)
T TIGR03335       182 ASVFKLLRL  190 (445)
T ss_pred             ECHHHHHHH
Confidence            877654443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	576
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-11
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-06
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-11
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-06
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		8e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-10
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-06
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		6e-10
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-04
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		7e-10
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		6e-09
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-06
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-08
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-06
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-08
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-06
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-08
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-06
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-08
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		8e-08
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-07
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-06
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-06
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-06
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-06
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		6e-04

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E  +++C     L N+G  VD R A+ +E C E+FI         + V         
Sbjct: 54  SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
             L+HSL  ++ T +                  TIK ++  ++    +     D+ +   
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
               +  SSF  VE       VD     +  VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGYQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
             D    K S  P  RGE+ V G  +  GY NNP  T E+
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E  +++C     L N+G  VD R A+ +E C E+FI         + V         
Sbjct: 54  SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
             L+HSL  ++ T +                  TIK ++  ++    +     D+ +   
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
               +  SSF  VE       VD     +  VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGFQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
             D    K S  P  RGE+ V G  +  GY NNP  T E+
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 119/301 (39%), Gaps = 94/301 (31%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
           S + V  + Y+SG+TGLPKGVM+TH  +V T+ A +    NP       DV L  LP+ H
Sbjct: 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNLYFHSDDVILCVLPMFH 281
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPA 381
           +  L   SIMLC G  +G  + L M           K ++++L       K T+   VP 
Sbjct: 282 IYAL--NSIMLC-GLRVG-AAILIM----------PKFEINLLLELIQRCKVTVAPMVPP 327
Query: 382 IFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           I                              LA  + S    + L           S+R 
Sbjct: 328 IV-----------------------------LAIAKSSETEKYDL----------SSIRV 348
Query: 442 VLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
           V  G         APL  + +  +N     A +GQ YG+TE  AG   +     S+G   
Sbjct: 349 VKSG--------AAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPVLAM----SLGFAK 394
Query: 501 PPVPC-----------CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
            P P              +K+V  D G   + ++P   GEI + G  +  GY NNP  T+
Sbjct: 395 EPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQIMKGYLNNPAATA 451
Query: 550 E 550
           E
Sbjct: 452 E 452

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           +Y E  +++      L N+G  VD R A+ +E C E+FI         + V         
Sbjct: 54  SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEK-----DSGVSGG 246
             L+HSL  ++ T +                  TIK ++  ++    +     D+ +   
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 247 IS-NWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
               +  SSF  VE       VD     +  VA+IM +SGSTGLPKGV +TH NIV
Sbjct: 174 TPPGFQASSFKTVE-------VD----RKEQVALIMNSSGSTGLPKGVQLTHENIV 218

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLV 511
           GGAPLS +    +      P + Q YGLTET +    +   D   G  G  VP    K++
Sbjct: 317 GGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVI 376
Query: 512 SWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEV 551
             D    K S  P  RGE+ V G  +  GY NNP  T E+
Sbjct: 377 DLDT---KKSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E F+ AC  A  +  +G  +    A+ +E  +++F+   G     + V        E
Sbjct: 86  TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNE 145
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN--DGSEKDSGVSGGISN 249
             L +SL+ +Q T + C                 I+ ++  ++  D   K S  S  I +
Sbjct: 146 RELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSF-IES 204
Query: 250 WTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI 300
              + F+E +       +  S   +   A+IM +SGSTGLPKGV +TH NI
Sbjct: 205 HLPAGFNEYDY------IPDSFDRETATALIMNSSGSTGLPKGVELTHKNI 249

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 453 GGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFS-EWDDPSVGRVGPPVPCCYIKL 510
           GGAPL+ +    +      P I Q YGLTET +    +    D   G  G  VP    K+
Sbjct: 349 GGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKI 408
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           V  D G     ++   RGE+ V G  +  GY NNP  TS
Sbjct: 409 VDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEATS 444

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 102/455 (22%), Positives = 165/455 (36%), Gaps = 113/455 (24%)
Query: 117 GRK--FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQG 174
           GRK    +LH G+    TY EV+ RA     GL   G  V  R A L         A+  
Sbjct: 32  GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91
Query: 175 CFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFEN 234
                  + T    L    + + LN  +   L+ D               T+++ +  + 
Sbjct: 92  VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 151
Query: 235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVM 294
              E                 +  E LG+ +  DP    +     + YT+G+TGLPKGV+
Sbjct: 152 KAPE--------------GYLAYEEALGEEA--DPVRVPERAACGMAYTTGTTGLPKGVV 195
Query: 295 ITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLT 352
            +H  +V  + A  +L+     S  DV L  +P+ HV           A C + Y +TL 
Sbjct: 196 YSHRALVLHSLA-ASLVDGTALSEKDVVLPVVPMFHV----------NAWC-LPYAATLV 243
Query: 353 MTDTSSKIKKGTKGDVSVLKP-------TLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLF 405
               + ++  G + D + L         T  A VP ++                L   L 
Sbjct: 244 ---GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW--------------LALADYLE 286
Query: 406 NIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI 465
           + G++                          K++R       R ++ G A   +   RF 
Sbjct: 287 STGHR-------------------------LKTLR-------RLVVGGSAAPRSLIARFE 314
Query: 466 NICMGAPIGQAYGLTETCAG----------STFSEWDDPSV-GRVGPPVPCCYIKLVSWD 514
              MG  + Q YGLTET              + SE +  ++  + G P+P   +++   D
Sbjct: 315 R--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA--D 370
Query: 515 EGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNN 544
           E G     +P+P+     GE+ + G  +T GY+ N
Sbjct: 371 EEG-----RPVPKDGKALGEVQLKGPWITGGYYGN 400

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E F+ +   A  +  +G N + R  + +E  +++F+   G     + V        E
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L++S+N +Q T +                   I+ +I  ++      +   G  S +T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 171
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
             +        +   V  S      +A+IM +SGSTGLPKGV + H              
Sbjct: 172 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPI 231
Query: 298 -GNIVATAAAIKTLIP 312
            GN +A   AI +++P
Sbjct: 232 FGNQIAPDTAILSVVP 247

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           V  D G     ++   RGE+ V G  + +GY NNP  T+
Sbjct: 379 VDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEATN 414

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E F+ +   A  +  +G N + R  + +E  +++F+   G     + V        E
Sbjct: 57  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L++S+N +Q T +                   I+ +I  ++      +   G  S +T
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 171
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
             +        +   V  S      +A+IM +SGSTGLPKGV + H              
Sbjct: 172 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 231
Query: 298 -GNIVATAAAIKTLIP 312
            GN +    AI +++P
Sbjct: 232 FGNQIIPDTAILSVVP 247

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 319 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 378
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           V  D G     ++   RGE+ V G  + +GY NNP  T+
Sbjct: 379 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATN 414

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E F+ +   A  +  +G N + R  + +E  +++F+   G     + V        E
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L++S+N +Q T +                   I+ +I  ++      +   G  S +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 166
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
             +        +   V  S      +A+IM +SGSTGLPKGV + H              
Sbjct: 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 298 -GNIVATAAAIKTLIP 312
            GN +    AI +++P
Sbjct: 227 FGNQIIPDTAILSVVP 242

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           V  D G     ++   RGE+ V G  + +GY NNP  T+
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATN 409

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY E F+ +   A  +  +G N + R  + +E  +++F+   G     + V        E
Sbjct: 52  TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L++S+N +Q T +                   I+ +I  ++      +   G  S +T
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----TDYQGFQSMYT 166
Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-------------- 297
             +        +   V  S      +A+IM +SGSTGLPKGV + H              
Sbjct: 167 FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI 226
Query: 298 -GNIVATAAAIKTLIP 312
            GN +    AI +++P
Sbjct: 227 FGNQIIPDTAILSVVP 242

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 452 CGGAPLSADSQRFINICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKL 510
            GGAPLS +    +      P I Q YGLTET +    +   D   G VG  VP    K+
Sbjct: 314 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKV 373
Query: 511 VSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
           V  D G     ++   RGE+ V G  + +GY NNP  T+
Sbjct: 374 VDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATN 409

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 151/432 (34%), Gaps = 93/432 (21%)
Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ +   RA   ASGL+  G +   R AIL++ C E              ++ +   L  
Sbjct: 33  THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNA 92
Query: 192 DALIHSLNETQVTTLICDXXXXXXXXXXXXXXXTIKNVIYFENDGSEKDSGVSGGISNWT 251
           D +   L +   + ++                  +K   Y   DGS              
Sbjct: 93  DEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKA-YAIGDGS-------------- 137
Query: 252 VSSFSEVEKLGKRSPVD-PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL 310
              F+  + L   +P   P   + +G  VI++T+   G P+G +I+ GN++   +++   
Sbjct: 138 -GPFAPFKDLASDTPFSAPEFGAADGF-VIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 311 IPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
                 +DV L  LPL HV  L    +ML    A G        D +   +     D+  
Sbjct: 196 W-RLTEADVNLGMLPLFHVTGL---GLMLTLQQAGGASVIAAKFDPAQAAR-----DIEA 246
Query: 371 LKPTLMAAVPAIFDRVRXXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERML 430
            K T+MA                      +  N+ +     +LA                
Sbjct: 247 HKVTVMAEF------------------APMLGNILDQAAPAQLA---------------- 272
Query: 431 WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSE 490
                  S+RAV G      I          +RF   C  A     +G +ET   STF+ 
Sbjct: 273 -------SLRAVTGLDTPETI----------ERFEATCPNATFWATFGQSETSGLSTFAP 315
Query: 491 WDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNP 545
           + D   S GR     P  +  +   D       D+P+P    GEIV+ G  V  GY+NN 
Sbjct: 316 YRDRPKSAGR-----PLFWRTVAVVD-----AEDRPLPPGEVGEIVLRGPTVFKGYWNNA 365
Query: 546 GKTSEVYKVNFH 557
             T   ++  +H
Sbjct: 366 AATQHAFRNGWH 377

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 112/289 (38%), Gaps = 72/289 (24%)
Query: 273 SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG----RSDVYLAYLPLAH 328
           S + V  + Y+SG+TGLPKGVM+TH  ++ T+ A +    NP       DV L  LP+ H
Sbjct: 176 SPDDVVALPYSSGTTGLPKGVMLTHKGLI-TSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 329 VLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGT-KGDVSVLKPTLMAAVPAIFDRVR 387
           +  L   SIMLC G  +G    L M     K + G+  G +   K ++   VP +   + 
Sbjct: 235 IYAL--NSIMLC-GLRVG-APILIM----PKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 388 XXXXXXXXXXXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRI 447
                                 K  L+++     G   L + L D +  K  +A L    
Sbjct: 287 KSPDLD----------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARL---- 326
Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFS-------EWDDPSVGRVG 500
                                     GQ YG+TE  AG   +       E  D   G  G
Sbjct: 327 --------------------------GQGYGMTE--AGPVLAMCLAFAKEPFDIKPGACG 358
Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS 549
             V    +K+V  + G     ++P   GEI + G  +  GY N+P  TS
Sbjct: 359 TVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEATS 404

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G  R  I G APL AD+ R  +   G  + + YG TET   ++     D   G VGP +P
Sbjct: 268 GHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
               ++   + G      K +PRG+   I V G NV  GY+  P KT   ++
Sbjct: 328 GVSARVTDPETG------KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 102/276 (36%), Gaps = 56/276 (20%)
Query: 278 AVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESI 337
           A+++YTSG+TG PKG +I    +  T  A+       G  DV +  LPL HV  L    +
Sbjct: 158 ALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-EDVLVQGLPLFHVHGLVLGIL 216
Query: 338 -MLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRXXXXXXXXX 396
             L  G ++ +    +    + ++  G          T++  VP ++ R+          
Sbjct: 217 GPLRRGGSVRHLGRFSTEGAARELNDGA---------TMLFGVPTMYHRI---------- 257
Query: 397 XXXLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAP 456
                                         E +  D  + K++        R ++ G A 
Sbjct: 258 -----------------------------AETLPADPELAKALAGA-----RLLVSGSAA 283
Query: 457 LSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEG 516
           L       I    G  + + YG+TET   ++     +P  G VG P+P   ++LV  D  
Sbjct: 284 LPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 517 GYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY 552
                D     GEI V G N+   Y N P  T+  +
Sbjct: 344 PIAALDGES-VGEIQVRGPNLFTEYLNRPDATAAAF 378

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 445 GRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVP 504
           G +R  I G APL AD+ R  +   G  + + YG+TET   ++     D   G VGP +P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALP 327
Query: 505 CCYIKLVSWDEGGYKTSDKPMPRGE---IVVGGFNVTAGYFNNPGKTSEVYK 553
               ++   + G        +PRG+   I V G NV  GY+  P  T   ++
Sbjct: 328 GVSARVTDPETG------XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 272 PSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT--LIPNPGRSDVYLAYLPLAH 328
           P  N +A + YTSGST  P+GV+ITH  + A   AI    +   PG  D  +++LP  H
Sbjct: 172 PVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPG--DRCVSWLPFYH 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-56
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-55
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	7e-54
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	4e-51
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	4e-51
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-49
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-46
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-46
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	6e-44
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-43
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-42
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-42
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	5e-41
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-28
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	1e-15
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	5e-28
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-17
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	7e-24
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-08
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-23
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-08
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-22
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-06
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-20
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	6e-18
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-16
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-16
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-15
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-14
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-13
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-13
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-11
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	6e-12
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	4e-11
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	8e-04
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-10
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-05

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  197 bits (503), Expect = 3e-56
 Identities = 94/454 (20%), Positives = 151/454 (33%), Gaps = 97/454 (21%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
           F  A                 TY E F+ +   A  +  +G N + R  + +E  +++F+
Sbjct: 42  FTDAHIEVNI-----------TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM 90

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
              G     + V        E  L++S+N +Q T +    K L+K+  V   L  I+ +I
Sbjct: 91  PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKII 150

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++          G  S +T  +        +   V  S      +A+IM +SGSTGLP
Sbjct: 151 IMDSKT-----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLP 205

Query: 291 KGVMITHGNIVATAAAIKTLIPNPGRS--DVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
           KGV + H       +  +  I           L+ +P  H         M      +  G
Sbjct: 206 KGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG------MFTTLGYLICG 259

Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
             +              ++          K      VP +F    +  ++ K        
Sbjct: 260 FRVVLMYRFEEELFLRSLQD--------YKIQSALLVPTLFSFFAKSTLIDK-------- 303

Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
                                        +D     ++  +          GGAPLS + 
Sbjct: 304 -----------------------------YD---LSNLHEI--------ASGGAPLSKEV 323

Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
            +          I Q YGLTET +    +   D   G VG  VP    K+V  D G    
Sbjct: 324 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG---- 379

Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEV 551
             K +    RGE+ V G  + +GY NNP  T+ +
Sbjct: 380 --KTLGVNQRGELCVRGPMIMSGYVNNPEATNAL 411

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  195 bits (499), Expect = 1e-55
 Identities = 99/454 (21%), Positives = 153/454 (33%), Gaps = 97/454 (21%)

Query: 111 FVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFI 170
           F  A  G  +           +Y E  +++C     L N+G  VD R A+ +E C E+FI
Sbjct: 44  FTNAVTGVDY-----------SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFI 92

Query: 171 AFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVI 230
                    + V           L+HSL  ++ T +    K L K+  V  ++ TIK ++
Sbjct: 93  PVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIV 152

Query: 231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLP 290
             ++          G     T    +        S     +  +  VA+IM +SGSTGLP
Sbjct: 153 ILDSK-----VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207

Query: 291 KGVMITHGNIVATAAAIKTLIP--NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG 348
           KGV +TH NIV   +  +  I           L  +P  H         M      +  G
Sbjct: 208 KGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFG------MFTTLGYLICG 261

Query: 349 STL------TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR-VREGVVKKVEEKGGLT 401
             +              ++          K T +  VP +F    +  ++ K        
Sbjct: 262 FRVVMLTKFDEETFLKTLQD--------YKCTSVILVPTLFAILNKSELLNK-------- 305

Query: 402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD- 460
                                        +D     ++  +          GGAPLS + 
Sbjct: 306 -----------------------------YD---LSNLVEI--------ASGGAPLSKEV 325

Query: 461 SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKT 520
            +          + Q YGLTET +    +   D   G  G  VP    K++  D      
Sbjct: 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTK---- 381

Query: 521 SDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEV 551
             K +    RGE+ V G  +  GY NNP  T E+
Sbjct: 382 --KSLGPNRRGEVCVKGPMLMKGYVNNPEATKEL 413

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  189 bits (483), Expect = 7e-54
 Identities = 87/443 (19%), Positives = 154/443 (34%), Gaps = 92/443 (20%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           +     +  +Y E+  RA   A+ LV  G  V  R A   E  VE  + +    R     
Sbjct: 21  IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           + + ++     L + + + +   ++CD  +   ++A+++ +      +  +  GS  D+ 
Sbjct: 81  LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAA 140

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
                +  T+           R   D         A I+YTSG+TG  KG M++H N+ +
Sbjct: 141 AGASEAFATID----------RGADDL--------AAILYTSGTTGRSKGAMLSHDNLAS 182

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT---DTSSK 359
            +  +          DV +  LP+ H   L      + +   +    ++      D    
Sbjct: 183 NSLTLVDYW-RFTPDDVLIHALPIYHTHGL-----FVASNVTLFARGSMIFLPKFDPDKI 236

Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
           +         + + T++  VP  +                            RL      
Sbjct: 237 LD-------LMARATVLMGVPTFYT---------------------------RLLQSPR- 261

Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
                                      +R  I G APL AD+ R  +   G  + + YG+
Sbjct: 262 -----------LTKETTGH--------MRLFISGSAPLLADTHREWSAKTGHAVLERYGM 302

Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
           TET   ++     D   G VGP +P    ++   + G      K +PR   G I V G N
Sbjct: 303 TETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETG------KELPRGDIGMIEVKGPN 356

Query: 537 VTAGYFNNPGKTSEVYKVN--FH 557
           V  GY+  P KT   ++ +  F 
Sbjct: 357 VFKGYWRMPEKTKSEFRDDGFFI 379

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  183 bits (467), Expect = 4e-51
 Identities = 80/482 (16%), Positives = 154/482 (31%), Gaps = 107/482 (22%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           ++A   + + +   +   +    +  +    +                  + E+ +    
Sbjct: 20  SLADRIDAAAEKFGEKTAI----ISAEPKFPSEFPESM-----------NFLEICEVTKK 64

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            ASG+   G        +     +++ +     +R + T V I        L H LN+++
Sbjct: 65  LASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSE 124

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
            TTL+  S   +    V      ++ V     +                V+S SEV   G
Sbjct: 125 ATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------------VNSLSEVMDSG 167

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
                +  +  +  VA+I YT G+TG+PKGVM+TH N+ A A  +          D  + 
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVG 226

Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMT--DTSSKIKKGTKGDVSVLKPTLMAAVP 380
            +P+ H  E    ++M+  G        + M   +     +     ++   K T   AVP
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEY-----VVMGMFNQEMLAE-----NIEKYKGTFSWAVP 276

Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
              +               L   L +       + +                        
Sbjct: 277 PALN--------------VLVNTLESSNKTYDWSYL------------------------ 298

Query: 441 AVLGGRIRFMICGGAPLSAD-SQRF------INICMGAPIGQAYGLTETCAGSTFSEWDD 493
                  +    G  P++    ++                 Q +G+TE C   T +    
Sbjct: 299 -------KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351

Query: 494 PS-VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTS 549
                  G P+    +K++S ++G      + +     GEIV+ G N+  GY+    +  
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDG------RELGVGESGEIVIRGPNIFKGYWKREKENQ 405

Query: 550 EV 551
           E 
Sbjct: 406 EC 407

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  183 bits (466), Expect = 4e-51
 Identities = 88/438 (20%), Positives = 143/438 (32%), Gaps = 100/438 (22%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +V   A   ASGL   G        +   +  E+ +AF G   +   +         
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L      ++   LI  +   +K+   +     +K +          DS   G      
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCV--------DSAPDG------ 155

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
              FSE+ +  +       + S + V  + Y+SG+TGLPKGVM+TH  ++ + A      
Sbjct: 156 CLHFSELTQADENEAPQVDI-SPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD 214

Query: 312 P---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKIKK 362
                    DV L  LP+ H+      ++     C +  G+ +       +      I+K
Sbjct: 215 NPNLYFHSEDVILCVLPMFHIY-----ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269

Query: 363 GTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG 422
                    K ++   VP +                 + K+            ++     
Sbjct: 270 --------YKVSIAPVVPPVMM--------------SIAKS----------PDLDK---- 293

Query: 423 AWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTE 481
                    D     S+R +          GGAPL  +           A +GQ YG+TE
Sbjct: 294 --------HD---LSSLRMI--------KSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334

Query: 482 TCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVG 533
                        E  D   G  G  V    +K+V  + G        +P    GEI + 
Sbjct: 335 AGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG------ASLPRNQPGEICIR 388

Query: 534 GFNVTAGYFNNPGKTSEV 551
           G  +  GY N+P  TS  
Sbjct: 389 GDQIMKGYLNDPEATSRT 406

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  182 bits (463), Expect = 5e-49
 Identities = 87/440 (19%), Positives = 145/440 (32%), Gaps = 96/440 (21%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           TY +V   +   A+     G N +    +L   C E+ ++F     +  T          
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             +      +    +I +++ + K+  + +    +   I    D +E      G      
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCI----DDNESVPIPEG------ 199

Query: 252 VSSFSEVEKLGKRSPVDPSLP--SQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT 309
              F+E+ +    +         S + V  + Y+SG+TGLPKGVM+TH  +V + A    
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259

Query: 310 LIP---NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTL------TMTDTSSKI 360
                      DV L  LP+ H+      ++     C +  G+ +       +      I
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIY-----ALNSIMLCGLRVGAAILIMPKFEINLLLELI 314

Query: 361 KKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSW 420
           ++         K T+   VP I       V+        + K+          +  E   
Sbjct: 315 QR--------CKVTVAPMVPPI-------VL-------AIAKS----------SETEK-- 340

Query: 421 FGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGL 479
                     +D     S+R V          G APL  +           A +GQ YG+
Sbjct: 341 ----------YD---LSSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379

Query: 480 TETCAGSTFSEWDDPS-----VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIV 531
           TE       S            G  G  V    +K+V  D G        +     GEI 
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG------DSLSRNQPGEIC 433

Query: 532 VGGFNVTAGYFNNPGKTSEV 551
           + G  +  GY NNP  T+E 
Sbjct: 434 IRGHQIMKGYLNNPAATAET 453

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  168 bits (429), Expect = 4e-46
 Identities = 80/435 (18%), Positives = 137/435 (31%), Gaps = 105/435 (24%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           L  G+    TY E+   A + A  +         R A+ A   +E  +A        +  
Sbjct: 42  LRFGERSL-TYAELAAAAGATAGRIGG-AG----RVAVWATPAMETGVAVVAALLAGVAA 95

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V +    G+  L H L+++  + ++                               +   
Sbjct: 96  VPLNPKSGDKELAHILSDSAPSLVLAP--------------------------PDAELPP 129

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
             G +    V   +       R  V          A+++YTSG+TG PKG +I    +  
Sbjct: 130 ALGALERVDVDVRA-------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALAT 182

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMT------DT 356
           T  A+          DV +  LPL HV       ++L     +  G ++           
Sbjct: 183 TLDALADAWQ-WTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFSTEGA 236

Query: 357 SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAV 416
           + ++  G          T++  VP ++ R+                             +
Sbjct: 237 ARELNDG---------ATMLFGVPTMYHRI--------------------------AETL 261

Query: 417 EGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
                 A  L                     R ++ G A L       I    G  + + 
Sbjct: 262 PADPELAKALAGA------------------RLLVSGSAALPVHDHERIAAATGRRVIER 303

Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFN 536
           YG+TET   ++     +P  G VG P+P   ++LV  ++G    +      GEI V G N
Sbjct: 304 YGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPN 362

Query: 537 VTAGYFNNPGKTSEV 551
           +   Y N P  T+  
Sbjct: 363 LFTEYLNRPDATAAA 377

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  168 bits (429), Expect = 4e-46
 Identities = 85/437 (19%), Positives = 137/437 (31%), Gaps = 101/437 (23%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
            D    TY ++   A   A  L   G     R A+L    VE+   F G  +     V I
Sbjct: 40  TDVRM-TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
            + L    +   L+++    +I  +     + A+ +       V  +    S        
Sbjct: 99  NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA------ 152

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNG-VAVIMYTSGSTGLPKGVMITHGNIVATA 304
                        E+L   +  +P++         IMYTSG+TG PKGV+ TH ++ + A
Sbjct: 153 -------------ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAA 199

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------TDTSS 358
           ++  + I +    D  L  LP+ HV  L           +   G TL        T   S
Sbjct: 200 SSWASTI-DVRYRDRLLLPLPMFHVAALT------TVIFSAMRGVTLISMPQFDATKVWS 252

Query: 359 KIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEG 418
            I +         +  +  AVPAI                              +  V  
Sbjct: 253 LIVEE--------RVCIGGAVPAIL---------------------------NFMRQVPE 277

Query: 419 SWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG 478
                       +  +             R+ I GGAP+     +         + Q Y 
Sbjct: 278 ------------FAELDAPDF--------RYFITGGAPMPEALIKIYAA-KNIEVVQGYA 316

Query: 479 LTETCAGSTFSEWDDPS--VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR--GEIVVGG 534
           LTE+C G T    +D     G  G       + +    + G            GE+V+  
Sbjct: 317 LTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR--GDDG-----VIREHGEGEVVIKS 369

Query: 535 FNVTAGYFNNPGKTSEV 551
             +   Y+N P  T + 
Sbjct: 370 DILLKEYWNRPEATRDA 386

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  163 bits (415), Expect = 6e-44
 Identities = 72/496 (14%), Positives = 142/496 (28%), Gaps = 133/496 (26%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W     +  +     +SHP                 A        +  G+ +  +Y E+ 
Sbjct: 27  WIDQ-PLTRILTVGVQSHP-HS-------------LA--------IICGERQL-SYIELD 62

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
             + + A+ L   G      A +      E++I F    +  + V+    S  +  L   
Sbjct: 63  RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
           + + Q   LI           + + ++     + + ++   +  ++              
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD-------------- 168

Query: 253 SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP 312
               +  +    + VD S    + VA    + GSTG PK +  TH +   +  A   +  
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC- 227

Query: 313 NPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
               +   L  LP  H         +   G    +  G  + M              ++ 
Sbjct: 228 GLNSNTRLLCALPAPHNFM------LSSPGALGVLHAGGCVVMAPNPEP--------LNC 273

Query: 371 L------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAW 424
                  +  + + VP+                                          W
Sbjct: 274 FSIIQRHQVNMASLVPSAVI--------------------------------------MW 295

Query: 425 GLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA 484
            LE+        +S        ++ +  GGA       R +   +   + Q +G+ E   
Sbjct: 296 -LEKAAQYKDQIQS--------LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL- 345

Query: 485 GSTFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGF 535
              ++  DD       + GR         IK+V  DE       + +P    G +   G 
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSD--DEIKIV--DEQY-----REVPEGEIGMLATRGP 395

Query: 536 NVTAGYFNNPGKTSEV 551
               GY+ +P   S+V
Sbjct: 396 YTFCGYYQSPEHNSQV 411

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  160 bits (408), Expect = 3e-43
 Identities = 68/441 (15%), Positives = 121/441 (27%), Gaps = 117/441 (26%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ E+  R  + A+ L   G     R A++A    +  IA     R       +   L  
Sbjct: 31  THAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90

Query: 192 DALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWT 251
             L   +   ++T  +    +  +++       +   +I+  +   + +    G      
Sbjct: 91  AELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLVRDGEPYSYG------ 142

Query: 252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
                         P++         A I YTSG+TGLPK  +I      +    + T +
Sbjct: 143 -------------PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189

Query: 312 P-NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSV 370
               GR +V L  +PL H             G      + L +                V
Sbjct: 190 GLRHGRHNVVLGLMPLYH-----------VVGFFAVLVAALAL------------DGTYV 226

Query: 371 L----------------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           +                + T + A P                                  
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHL------------------------------- 255

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG 474
                          L  A         L   +R +   GA +       ++  +     
Sbjct: 256 -------------DALAAAAAHAGSSLKL-DSLRHVTFAGATMPDAVLETVHQHLPGEKV 301

Query: 475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIV 531
             YG TE        +    +      P     +++V    GG    D+ +     GE++
Sbjct: 302 NIYGTTEAMNSLYMRQPKTGTEMA---PGFFSEVRIV--RIGG--GVDEIVANGEEGELI 354

Query: 532 V-GGFNVTAGYFNNPGKTSEV 551
           V    +   GY N P  T+E 
Sbjct: 355 VAASDSAFVGYLNQPQATAEK 375

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  158 bits (403), Expect = 2e-42
 Identities = 78/437 (17%), Positives = 133/437 (30%), Gaps = 80/437 (18%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
                    TYGE+ +RA  FAS L   G + + R  ++    V   +AF G     +  
Sbjct: 42  YIDDTGST-TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           V   + L     ++ L  +    +I     ++ ++    S +     +            
Sbjct: 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI----------- 149

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLP-SQNGVAVIMYTSGSTGLPKGVMITHGNIV 301
           VS    +    +    E +   +P   +     + +A  +Y+SGSTG PKG + TH N+ 
Sbjct: 150 VSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLY 209

Query: 302 ATAAAIKTLIPNPGRSDVYLAYLPLAHV--LELAAESIMLCAGCAIGYGSTLTMTDTSSK 359
            TA      I     +DV  +   L     L       +     AI      T     ++
Sbjct: 210 WTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269

Query: 360 IKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGS 419
           + +         +PT+   VP ++                             +      
Sbjct: 270 LVE--------HRPTVFYGVPTLY---------------------------ANMLVSPN- 293

Query: 420 WFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL 479
                        A    ++R             G  L  +         G  I    G 
Sbjct: 294 -----------LPARADVAIRIC--------TSAGEALPREIGERFTAHFGCEILDGIGS 334

Query: 480 TETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
           TE       +       G  G PVP   I+L   DE G       +P    G++ + G +
Sbjct: 335 TEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR--DEAG-----HAVPDGEVGDLYIKGPS 387

Query: 537 VTAGYFNNPGKTSEVYK 553
               Y+NN  K+   + 
Sbjct: 388 AAVMYWNNREKSRATFL 404

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  158 bits (403), Expect = 2e-42
 Identities = 84/495 (16%), Positives = 143/495 (28%), Gaps = 135/495 (27%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W G  T   L       +  DR              A        +  G+  W +Y E+ 
Sbjct: 22  WAGE-TFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
            RA   A+G    G     R  +      E+F      FR     V    S     + + 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 198 LNETQVTTLIC-----DSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTV 252
               +    I                V S L T+KN+I                      
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE--------------F 163

Query: 253 SSFSEVEKLGKRSP-VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI 311
               ++     + P V  S      VA +  + GSTGL K +  TH + + +      + 
Sbjct: 164 LPLEDLHTEPVKLPEVKSS-----DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218

Query: 312 PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL 371
                S VYLA LP+AH   L++  ++      +  G  + ++ + S             
Sbjct: 219 -WLDHSTVYLAALPMAHNYPLSSPGVL----GVLYAGGRVVLSPSPSP--------DDAF 265

Query: 372 ------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWG 425
                 K T+ A VP +                                         W 
Sbjct: 266 PLIEREKVTITALVPPLAM--------------------------------------VW- 286

Query: 426 LERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAG 485
           ++          S        ++ +  GGA  SA++ R +    G  + Q +G+ E    
Sbjct: 287 MDAASSRRDDLSS--------LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL-- 336

Query: 486 STFSEWDDP------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFN 536
             ++  DDP      + G+  P  P    ++   D+       + +     G ++  G  
Sbjct: 337 VNYTRLDDPEEIIVNTQGK--PMSPYDESRVW--DDHD-----RDVKPGETGHLLTRGPY 387

Query: 537 VTAGYFNNPGKTSEV 551
              GY+      +  
Sbjct: 388 TIRGYYKAEEHNAAS 402

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  156 bits (396), Expect = 5e-41
 Identities = 71/449 (15%), Positives = 125/449 (27%), Gaps = 106/449 (23%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
           +  G+ +  +Y E+   A + A  L   G      A +      E +I F    +  +  
Sbjct: 44  VIDGERQL-SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQ-----LKKLSAVSSSLKTIKNVIYFENDGS 237
           V    S     L    ++ +   LI D +         L+   +   +I+ V    + G 
Sbjct: 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
                           +  +              P+ + VA    + G+TG PK +  TH
Sbjct: 163 H---------------NLQDAINHPAEDFTATPSPA-DEVAYFQLSGGTTGTPKLIPRTH 206

Query: 298 GNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAG--CAIGYGSTLTMTD 355
            +   +      +     +   YL  +P AH         M   G       G T+ +  
Sbjct: 207 NDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYA------MSSPGSLGVFLAGGTVVLAA 259

Query: 356 TSSKIKKGTKGDVSVL------KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGY 409
             S                   +  + A VP                             
Sbjct: 260 DPSA--------TLCFPLIEKHQVNVTALVPPAV-------------------------- 285

Query: 410 KRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM 469
                           L  +                  + +  GGA LSA     I   +
Sbjct: 286 -SLWLQALIEGESRAQLASL------------------KLLQVGGARLSATLAARIPAEI 326

Query: 470 GAPIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPV-PCCYIKLVSWDEGGYKTSDKPM 525
           G  + Q +G+ E     T    DD +   +   G P+ P   + +   D  G      P+
Sbjct: 327 GCQLQQVFGMAEGLVNYTRL--DDSAEKIIHTQGYPMCPDDEVWVA--DAEG-----NPL 377

Query: 526 PR---GEIVVGGFNVTAGYFNNPGKTSEV 551
           P+   G ++  G     GY+ +P   +  
Sbjct: 378 PQGEVGRLMTRGPYTFRGYYKSPQHNASA 406

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  118 bits (298), Expect = 1e-28
 Identities = 51/273 (18%), Positives = 98/273 (35%), Gaps = 36/273 (13%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGL-VNFGHNVDTRAAILAETCVEWFIAFQGCFRQSIT 181
           +  G   + TY  ++  A   A  L          R  +  +  ++  I    C+  +I 
Sbjct: 20  ITDGQESY-TYQNLYCEASLLAKRLKAYQQ---S-RVGLYIDNSIQSIILIHACWLANIE 74

Query: 182 VVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS 241
           +  I + L  + + + +    V  + C      +   + S             +G   ++
Sbjct: 75  IAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNT 134

Query: 242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNG--VAVIMYTSGSTGLPKGVMITHGN 299
                 ++           + K SP +    S N   +A IM+TSG+TG  K V  T  N
Sbjct: 135 MGIQYDTSNE-------TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN 187

Query: 300 IVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTM------ 353
             A+A   K  +    R   +L+ LP+ H+   +  S++L    A+  G T+ +      
Sbjct: 188 HYASAIGCKESL-GFDRDTNWLSVLPIYHI---SGLSVLL---RAVIEGFTVRIVDKFNA 240

Query: 354 TDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRV 386
               + IK          + T ++ VP   + +
Sbjct: 241 EQILTMIKNE--------RITHISLVPQTLNWL 265

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 78.4 bits (194), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPS--VGRVGPP 502
            ++ ++ GGA LSA   +  +      PI  ++G+TETC+    +  +        VG P
Sbjct: 275 NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMP 332

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNP 545
                +K+ +               GE+++ G NV  GY    
Sbjct: 333 SANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPT 366

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  116 bits (294), Expect = 5e-28
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 18/223 (8%)

Query: 123 LHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITV 182
             +      T+ +   RA   ASGL+  G +   R AIL++ C E              +
Sbjct: 25  FMVDGVRL-THRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83

Query: 183 VTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG 242
           + +   L  D +   L +   + ++  +     ++ V  SL  +K      +        
Sbjct: 84  LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG----- 138

Query: 243 VSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA 302
                       F+  + L   +P            VI++T+   G P+G +I+ GN++ 
Sbjct: 139 -----------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLI 187

Query: 303 TAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAI 345
             +++         +DV L  LPL HV  L     +  AG A 
Sbjct: 188 AQSSLVDAWR-LTEADVNLGMLPLFHVTGLGLMLTLQQAGGAS 229

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 84.9 bits (211), Expect = 1e-17
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 446 RIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPC 505
            +R +     P +   +RF   C  A     +G +ET   STF+ + D      G P+  
Sbjct: 273 SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLSTFAPYRD-RPKSAGRPLFW 329

Query: 506 CYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSEV 551
             + +V  D        +P+P    GEIV+ G  V  GY+NN   T   
Sbjct: 330 RTVAVV--DAED-----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHA 371

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  104 bits (260), Expect = 7e-24
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 45/277 (16%)

Query: 61  PGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKF 120
             +   +     +         ++ A      +  P D            F+        
Sbjct: 3   SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFT--------FMDYEQDWD- 53

Query: 121 EKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSI 180
                G     T+ +++ R  + A  L   G   D R  I A   +E+ +AF G  +   
Sbjct: 54  -----GVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107

Query: 181 TVVTIY---SSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS 237
             V +      + ++     L+++    ++  S  +  +    +           E D  
Sbjct: 108 IAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167

Query: 238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH 297
           + D+                       +            A + YTSGST  P GV+++H
Sbjct: 168 DLDAP----------------------NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSH 205

Query: 298 GNIVATAAAIK-----TLIPNPGRSDVYLAYLPLAHV 329
            N+      +           P  +   +++LP  H 
Sbjct: 206 QNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 37/139 (26%)

Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDP-- 494
           G I  ++ G   + A + +RF +    A           +Y L E       S+   P  
Sbjct: 311 GNILTILSGSERVQAATIKRFAD--RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPE 368

Query: 495 ---------SVGRVGPPVPCCYIKLVSWDEGGYKTSD----------KPMPR---GEIVV 532
                    S G   P        L+S        S              P    GEI V
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLIS---YMLPRSPIVRIVDSDTCIECPDGTVGEIWV 425

Query: 533 GGFNVTAGYFNNPGKTSEV 551
            G NV  GY+  P ++   
Sbjct: 426 HGDNVANGYWQKPDESERT 444

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  100 bits (252), Expect = 1e-22
 Identities = 42/205 (20%), Positives = 71/205 (34%), Gaps = 25/205 (12%)

Query: 129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSS 188
           E  TY ++   A + A+ L   G     R  +L    +    AF GC       V IY  
Sbjct: 39  ETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98

Query: 189 LGEDA---LIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
             E         +  ++   ++  +  +KK +                      +   + 
Sbjct: 99  AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT--------------------ADELNTNP 138

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA 305
                   +   +E     S    S    N +A + YTSGST  PKGVM++H N++    
Sbjct: 139 KFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN 197

Query: 306 AIKTLIPNPGRSDVYLAYLPLAHVL 330
            I T   +     +  ++LP  H +
Sbjct: 198 KIFTSF-HMNDETIIFSWLPPHHDM 221

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 27/145 (18%), Positives = 35/145 (24%), Gaps = 48/145 (33%)

Query: 445 GRIRFMICGGAPLSADS-QRFINICMGAPIG-------QAYGLTETCAGSTFSEWDDPSV 496
                   G  P+  ++ + F         G         YGL E     T         
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAF--KEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346

Query: 497 -----------GRVGPPVPCC--YIKLVSWDEGGYKTSDKPMPR---------------- 527
                       RV           KLVS        S  P+                  
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVS--------SGNPIQEVKIIDPDTLIPCDFDQ 398

Query: 528 -GEIVVGGFNVTAGYFNNPGKTSEV 551
            GEI V   +V  GY+N P +T   
Sbjct: 399 VGEIWVQSNSVAKGYWNQPEETRHA 423

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 65/445 (14%), Positives = 138/445 (31%), Gaps = 111/445 (24%)

Query: 132 TYGEVFDRACSFASGLVN-FGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLG 190
            + E+ + +   A+ L    G     R A++     EW++   GC R  +  +     + 
Sbjct: 75  NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134

Query: 191 EDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNW 250
              +++ L  ++   ++   + ++++  V+S   +++  +       +       G  N+
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD-------GWLNF 187

Query: 251 T--VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK 308
              ++  S      +    +         + I +TSG++GLPK    ++           
Sbjct: 188 KKLLNEASTTHHCVETGSQEA--------SAIYFTSGTSGLPKMAEHSYS---------- 229

Query: 309 TLIPNPGRSDVYLAYLPLA-HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKG-TKG 366
                            +      L A  IM              ++DT      G    
Sbjct: 230 ----------SLGLKAKMDAGWTGLQASDIMWT------------ISDT------GWILN 261

Query: 367 DVSVLKPTLMAAVPAIFDRVRE---GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFG- 422
            +  L              + +    V+ K      +                  S  G 
Sbjct: 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-----------------SMMGA 304

Query: 423 --AWGLERML----WDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQA 476
              +   RML      +  F  ++  +          G  L  ++        G  I ++
Sbjct: 305 PIVY---RMLLQQDLSSYKFPHLQNCVT--------VGESLLPETLENWRAQTGLDIRES 353

Query: 477 YGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR---GEIVVG 533
           YG TET      S+      G +G    C  ++++  D+ G       +P    G+I + 
Sbjct: 354 YGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQII--DDKG-----NVLPPGTEGDIGIR 406

Query: 534 G-----FNVTAGYFNNPGKTSEVYK 553
                   + +GY +NP KT+   +
Sbjct: 407 VKPIRPIGIFSGYVDNPDKTAANIR 431

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 60/313 (19%), Positives = 93/313 (29%), Gaps = 97/313 (30%)

Query: 259 EKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
           +   +    DP+     N  A IMYTSG+TG PKG + TH NI      +  +  +    
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQ-- 647

Query: 318 DVYLAYLPLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL--- 371
           D +L+    A      +  A         ++   + L +        + T  D   L   
Sbjct: 648 DTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLDTERLTDL 692

Query: 372 ----KPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLE 427
                  +M A  A+F                             L      W       
Sbjct: 693 ILQENVNVMFATTALF---------------------------NLLTDAGEDWMKG---- 721

Query: 428 RMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGS 486
                              +R ++ GG   S    ++ + I     +   YG TE    +
Sbjct: 722 -------------------LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA 762

Query: 487 TFSEWDDPSVGR----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNV 537
           T     D         +G P+     YI L   +E       +  P    GE+ + G  V
Sbjct: 763 TAHVVHDLPDSISSLPIGKPISNASVYI-L---NEQS-----QLQPFGAVGELCISGMGV 813

Query: 538 TAGYFNNPGKTSE 550
           + GY N    T E
Sbjct: 814 SKGYVNRADLTKE 826

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 81.4 bits (202), Expect = 2e-16
 Identities = 61/293 (20%), Positives = 94/293 (32%), Gaps = 93/293 (31%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP-NPGRSDVYLAYLPL---AHVLELAAE 335
           I++TSG+TG PKGV I+H N+++    +      +  +    LA  P      V+  A  
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP- 208

Query: 336 SIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVRE 388
                    +  G TL        + K    D   L          +  + P+  D    
Sbjct: 209 --------TLALGGTLFA------LPKELVADFKQLFTTIAQLPVGIWTSTPSFAD---- 250

Query: 389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIR 448
                                     A+    F    +           ++         
Sbjct: 251 -------------------------MAMLSDDFCQAKM----------PALTHF------ 269

Query: 449 FMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTF---SEWDDPSVGRV--GPP 502
                G  L+  + ++       A I  AYG TE     +    +     +  R+  G P
Sbjct: 270 --YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP 327

Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE 550
            P    YI +   DE G     K +     GEI+V G  V+ GY NNP KT+E
Sbjct: 328 KPDSPTYI-I---DEDG-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 80.6 bits (200), Expect = 3e-16
 Identities = 51/292 (17%), Positives = 83/292 (28%), Gaps = 93/292 (31%)

Query: 280 IMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPL---AHVLELAAES 336
           I+YTSGSTG PKGV IT+  +V+                V+L   P      V+++    
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-LQTGQVFLNQAPFSFDLSVMDIYP-- 205

Query: 337 IMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPTLMAAVPAIFDRVREG 389
                  ++  G TL        I K        L          +  + P+        
Sbjct: 206 -------SLVTGGTLWA------IDKDMIARPKDLFASLEQSDIQVWTSTPSFA------ 246

Query: 390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRF 449
                         +                     L    +   +  +++         
Sbjct: 247 -------------EMC--------------------LMEASFSESMLPNMKTF------- 266

Query: 450 MICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP-----PV 503
            +  G  L  +  ++ I     A I   YG TE     T     +  + +          
Sbjct: 267 -LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCK 325

Query: 504 P--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNPGKTSE 550
                 I +    E G        P    GEIV+ G +V+ GY  +P  T +
Sbjct: 326 SDCRLLI-M---KEDG-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 59/307 (19%), Positives = 90/307 (29%), Gaps = 94/307 (30%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
              D  +        I+YTSGSTG PKGV I+  N+ +    I    P      ++L   
Sbjct: 134 VSQDQWVKEHE-TFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP-VSGGKIFLNQA 191

Query: 325 PLA---HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
           P +    V++L            +  G TL        + K       VL          
Sbjct: 192 PFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVLFEELKKSGLN 236

Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
           +  + P+                      +                     L    +   
Sbjct: 237 VWTSTPSFV-------------------QMC--------------------LMDPGFSQD 257

Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSEWDD 493
           +               +  G  L     +  +     A I   YG TE     T  E  +
Sbjct: 258 LLPHADTF--------MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITN 309

Query: 494 PSVGR-----VGPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFN 543
             + R     VG   P    +I +   DE G     +P+P    GEIV+ G +V+ GY  
Sbjct: 310 DVISRSESLPVGFAKPDMNIFI-M---DEEG-----QPLPEGEKGEIVIAGPSVSRGYLG 360

Query: 544 NPGKTSE 550
            P  T +
Sbjct: 361 EPELTEK 367

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 74.8 bits (185), Expect = 2e-14
 Identities = 58/311 (18%), Positives = 94/311 (30%), Gaps = 113/311 (36%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           + +     S + +A ++YTSG+TG PKG M+ H  I       +  +      D    + 
Sbjct: 173 TNLHVPSKSTD-LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-VTEKDRIGQFA 230

Query: 325 PL---AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVL-------KPT 374
            +   A V E+           A+  G++L +      I K T  D           + T
Sbjct: 231 SISFDASVWEMFM---------ALLTGASLYI------ILKDTINDFVKFEQYINQKEIT 275

Query: 375 LMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAI 434
           ++   P                                                 L D  
Sbjct: 276 VITLPPTYV--------------------------------------------VHL-DPE 290

Query: 435 VFKSVRAVLGGRIRFMICGGAPLSADSQ-------RFINICMGAPIGQAYGLTETCAGST 487
              S++ +        I  G+  S            +IN         AYG TET   +T
Sbjct: 291 RILSIQTL--------ITAGSATSPSLVNKWKEKVTYIN---------AYGPTETTICAT 333

Query: 488 FSEWDDPSVGRV---GPPVP--CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTA 539
                  ++G     G P+     YI +   DE       +       GE+ +GG  +  
Sbjct: 334 TWVATKETIGHSVPIGAPIQNTQIYI-V---DENL-----QLKSVGEAGELCIGGEGLAR 384

Query: 540 GYFNNPGKTSE 550
           GY+  P  TS+
Sbjct: 385 GYWKRPELTSQ 395

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 21/198 (10%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 132 TYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGE 191
           T+ ++   +   A+  V  G        +  ++  +++    G  +     V     L  
Sbjct: 88  TFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKT 147

Query: 192 DALIHSLNETQVTTLICDS--KQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISN 249
             +++ + +  +  ++C +     +++    +    I                + G I  
Sbjct: 148 RDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV-----LEGWIDF 202

Query: 250 WTV-----SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA 304
                     F            D          ++ ++SG+ G PK V   +   +   
Sbjct: 203 RKELEESSPIFERPTGEVSTKNEDI--------CLVYFSSGTAGFPKMVEHDNTYPLGHI 254

Query: 305 AAIKTLIPNPGRSDVYLA 322
              K    N     ++  
Sbjct: 255 LTAKYWQ-NVEDDGLHYT 271

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 69.8 bits (172), Expect = 8e-13
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 17/205 (8%)

Query: 126 GDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTI 185
           G+    TY EV+ RA     GL   G  V  R A L         A+         + T 
Sbjct: 43  GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102

Query: 186 YSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG 245
              L    + + LN  +   L+ D   L  + A+   LKT+++ +  +    E       
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE------- 155

Query: 246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITH-GNIVATA 304
                   ++   E+          +P +     + YT+G+TGLPKGV+ +H   ++ + 
Sbjct: 156 -----GYLAY---EEALGEEADPVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206

Query: 305 AAIKTLIPNPGRSDVYLAYLPLAHV 329
           AA           DV L  +P+ HV
Sbjct: 207 AASLVDGTALSEKDVVLPVVPMFHV 231

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 63.7 bits (156), Expect = 7e-11
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 26/122 (21%)

Query: 446 RIRFMICGGAPLSAD-SQRFINICMGAPIGQAYGLTETCAGSTFS----EWDDPSV---- 496
            +R ++ GG+        RF    MG  + Q YGLTET      +      +  S     
Sbjct: 294 TLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351

Query: 497 ---GRVGPPVPCCYIKLVSWDEGGYKTSDKPMPR-----GEIVVGGFNVTAGYFNNPGKT 548
               + G P+P   +++   DE G     +P+P+     GE+ + G  +T GY+ N   T
Sbjct: 352 TLKAKTGLPIPLVRLRVA--DEEG-----RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404

Query: 549 SE 550
             
Sbjct: 405 RS 406

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 66.3 bits (161), Expect = 6e-12
 Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 52/275 (18%)

Query: 269 PSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPG--RSDVYLAYLPL 326
           P     +    +  + G+TG PK V+     I A  +   +   +     S   LA +P 
Sbjct: 85  PQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPT 144

Query: 327 -AHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR 385
             H++    +   L  G  + +   +        + +G    V      L+  V      
Sbjct: 145 GPHIVGAINKERALRLG-GMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMN 203

Query: 386 VREGVVKKVEEKGGLTKNLFNI-GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLG 444
                           + L       R L             +R      + +S+  +  
Sbjct: 204 QD-------------IRFLVTTPPVLRELL------------KRPEVVLQMKQSLAQI-- 236

Query: 445 GRIRFMICGGAPLSADSQRFI--NICMGAPIGQAYGLTETC--AGSTFSEWDDPSVGRVG 500
                   GG  L+ D  +FI   I        +YG T     + S     +   V    
Sbjct: 237 ------TLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVI-YD 289

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMP---RGEIVV 532
              P     +V           + +    RG ++V
Sbjct: 290 SFSPFITYDVVDSITA------QTVEYGERGNVIV 318

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP-------GRS 317
           S +  + P     A ++YTSGSTG PKGV ++  N+ + + A   LI N        G  
Sbjct: 166 SDILNNYPENL-DAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGV 224

Query: 318 DVYLAYLPL---AHVLEL 332
             +L         H+ E+
Sbjct: 225 GKFLCLASRAFDVHIGEM 242

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 448 RFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRV--GPPVP- 504
            ++  GG  ++  +Q+  +      +   YG TE   G +       S      G P+  
Sbjct: 297 VYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDS-DTRCIGHPLGD 355

Query: 505 -CCYIKLVSWDEGGYKTSDKPMPR---GEIVVGGFNVTAGYFNNP 545
              ++ L     G    S++ + +   GE+V+ G  V  GY N P
Sbjct: 356 SVAHV-L---APG----SNEHVKKGMAGELVIEGSLVANGYLNRP 392

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 265 SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYL 324
           S   P   +   +A I ++SG+TG PK +  TH  I         L         +L   
Sbjct: 155 SVARPCFAADQ-IAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL--AFAPQMRFLVNS 211

Query: 325 PLA 327
           PL+
Sbjct: 212 PLS 214

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 20/114 (17%)

Query: 448 RFMICGGAPLSADS-QRFINICMGAPIGQAYGLTETCAGSTFSE--WDDPSVGRV--GPP 502
           R ++ GG  LS    +R +       +   YG TE    +       DD     +  G  
Sbjct: 279 RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA 338

Query: 503 VP--CCYIKLVSWDEGGYKTSDKPMPR----GEIVVGGFNVTAGYFNNPGKTSE 550
           +      + L   DE G     + +      GEIV  G  +  GY N+  +T  
Sbjct: 339 IAGTAVLL-L---DEHG-----QEIAEPDRAGEIVAFGAGLAQGYRNDAARTRA 383

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	96.4
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.19
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	95.82
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	92.64
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	92.22
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.96
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	81.16

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.1e-66  Score=616.83  Aligned_cols=444  Identities=17%  Similarity=0.193  Sum_probs=363.8

Q ss_pred             CcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHH
Q 008134            8 SFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAAL   87 (576)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~   87 (576)
                      .||+++|++..++.|...+..+++    ..++.  |..+   +++++++++.|+++++..+|   .+..+.+. .+++++
T Consensus       403 ~y~~~lf~~~~i~~l~~~~~~lL~----~l~~~--p~~~---~~~~~~l~~~e~~~~~~~~~---~~~~~~~~-~~l~~~  469 (1304)
T 2vsq_A          403 AYNENVFDEAFILRLKSQLLTAIQ----QLIQN--PDQP---VSTINLVDDREREFLLTGLN---PPAQAHET-KPLTYW  469 (1304)
T ss_dssp             EEETTTSCHHHHHHHHHHHHHHHH----HHHHS--TTSB---GGGCCCCCHHHHHHHHTTTS---CCCCCCCC-CCHHHH
T ss_pred             EECCccCCHHHHHHHHHHHHHHHH----HhccC--cccc---ccccCCCCHHHHHHHHHhcC---CCCCCCCC-CCHHHH
Confidence            588889998888887777777766    23344  6666   99999999999999888888   55555565 799999


Q ss_pred             HHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHH
Q 008134           88 FEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVE  167 (576)
Q Consensus        88 ~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~  167 (576)
                      |+++++++||++|+++            +++           ++||+||+++++++|++|+++|+++|++|+|+++||++
T Consensus       470 ~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~  526 (1304)
T 2vsq_A          470 FKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE  526 (1304)
T ss_dssp             HHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH
T ss_pred             HHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH
Confidence            9999999999999986            333           79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCC
Q 008134          168 WFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGI  247 (576)
Q Consensus       168 ~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~  247 (576)
                      +++++|||+|+|++||||||.+|.+++.+++++++++++|++......+.    .++....++.++...           
T Consensus       527 ~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~-----------  591 (1304)
T 2vsq_A          527 LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT-----------  591 (1304)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----------
T ss_pred             HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----------
Confidence            99999999999999999999999999999999999999999987543321    122222333322110           


Q ss_pred             CCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChH
Q 008134          248 SNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLA  327 (576)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~  327 (576)
                               .   .......+.....++++|||+|||||||+||||+++|+++.+. .+....+ .++++|++++++|++
T Consensus       592 ---------~---~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~  657 (1304)
T 2vsq_A          592 ---------R---FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYA  657 (1304)
T ss_dssp             ---------G---GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTT
T ss_pred             ---------c---cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCcc
Confidence                     0   0011111234567899999999999999999999999999876 4444555 889999999999999


Q ss_pred             HHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNI  407 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~  407 (576)
                      |+.+++.++.+|+.|+++++.+.....+.     ..+.+.|.++++|+++++|++++.+.+.....              
T Consensus       658 fd~~~~~~~~~l~~G~~l~~~~~~~~~~~-----~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--------------  718 (1304)
T 2vsq_A          658 FDAFTFDFYASMLNAARLIIADEHTLLDT-----ERLTDLILQENVNVMFATTALFNLLTDAGEDW--------------  718 (1304)
T ss_dssp             STHHHHHHHHHHTTTCEEEECCGGGTTCH-----HHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH--------------
T ss_pred             HHHHHHHHHHHHHcCCEEEECChhhcCCH-----HHHHHHHHHcCCcEEEccHHHHHHHHhhchhc--------------
Confidence            99999999999999999999766544443     23444599999999999999999886531100              


Q ss_pred             HHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcccccCCc
Q 008134          408 GYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLTETCAGS  486 (576)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~  486 (576)
                              +                            ++||.+++|||++++++.+.|.+.+ +++++|.||+||+++.+
T Consensus       719 --------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          719 --------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             --------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred             --------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence                    0                            2899999999999999999888776 47899999999999887


Q ss_pred             cccCCCC----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cccc
Q 008134          487 TFSEWDD----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HCVW  560 (576)
Q Consensus       487 ~~~~~~~----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g~~  560 (576)
                      +......    ....++|+|++|++++|+| ++++.   +|+|++|||||+|+++++||+|+|++|+++|+.+|  +|.|
T Consensus       763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~  838 (1304)
T 2vsq_A          763 TAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQL---QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET  838 (1304)
T ss_dssp             EEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred             eeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCC---CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence            7654322    2347899999999999999 65554   67999999999999999999999999999998776  5788


Q ss_pred             eeeeCCeecccCccC
Q 008134          561 MLCICLYVSCDKTLE  575 (576)
Q Consensus       561 ~~~TGDlg~~d~d~e  575 (576)
                      ||||||+|||++||.
T Consensus       839 ~yrTGDl~~~~~dG~  853 (1304)
T 2vsq_A          839 LYRTGDLARWLPDGT  853 (1304)
T ss_dssp             EEEEEEEEEECTTSC
T ss_pred             eEecCCeEEEcCCCe
Confidence            999999999999985

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=4.4e-64  Score=547.43  Aligned_cols=406  Identities=20%  Similarity=0.234  Sum_probs=338.4

Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCC
Q 008134           76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD  155 (576)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g  155 (576)
                      .+++. .++.++|+++++++||++|+++.+           +. +   ..+..+++||+||.++++++|++|+++|+++|
T Consensus        14 ~~~~~-~~l~~~l~~~a~~~p~~~A~~~~~-----------~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g   77 (549)
T 3g7s_A           14 LYYPK-ISLADRIDAAAEKFGEKTAIISAE-----------PK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKG   77 (549)
T ss_dssp             CCCCC-CCTTHHHHHHHHHHTTSEEEEEES-----------SC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCcCC-CCHHHHHHHHHHhCCCceEEEeCC-----------Cc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCC
Confidence            34444 799999999999999999999752           10 0   01223589999999999999999999999999


Q ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCC
Q 008134          156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       156 d~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      |+|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++....+.+........ ...++..+..
T Consensus        78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  156 (549)
T 3g7s_A           78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE  156 (549)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC
Confidence            999999999999999999999999999999999999999999999999999999988887777665544 4555554421


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCC-CCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                      ..++.++......... .....+ +++++|+|||||||.||||+++|+++++.+......+ ++
T Consensus       157 ----------------~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~  218 (549)
T 3g7s_A          157 ----------------VNSLSEVMDSGSEDFE-NVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GL  218 (549)
T ss_dssp             ----------------SSCHHHHHHHSCSCCC-CCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CC
T ss_pred             ----------------CcCHHHHHhcCccccc-cccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CC
Confidence                            2346666654433322 223334 8999999999999999999999999999999988888 99


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      .++|++++.+|++|++++..++.++..|+++++   .++..+.+.           ++++++|+++++|+++..+.+...
T Consensus       219 ~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~  287 (549)
T 3g7s_A          219 SHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLE  287 (549)
T ss_dssp             CTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhh
Confidence            999999999999999999888889999999998   344555555           999999999999999999877543


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh---
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC---  468 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~---  468 (576)
                      ....                                             ....++||.+++||+++++++.++|.+.   
T Consensus       288 ~~~~---------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~  322 (549)
T 3g7s_A          288 SSNK---------------------------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAE  322 (549)
T ss_dssp             HSCC---------------------------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             hhcc---------------------------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHh
Confidence            2100                                             0012489999999999999999998887   


Q ss_pred             -hC---CceecccCcccccCCccccCCCC-CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          469 -MG---APIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       469 -~~---~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                       ++   ++++|.||+||++++++...... ....++|+|++|++++|+|+++++.   +++|+.|||+|+|+++++|||+
T Consensus       323 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~  399 (549)
T 3g7s_A          323 KCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRE---LGVGESGEIVIRGPNIFKGYWK  399 (549)
T ss_dssp             HSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCE---ECTTCCEEEEEESTTSCSEETT
T ss_pred             hcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcC---CCCCCceEEEEECcchhhhhCC
Confidence             56   89999999999998877654433 3457999999999999999777765   5699999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+.|+++|..+++|.+||||||+|++|+||.
T Consensus       400 ~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~  431 (549)
T 3g7s_A          400 REKENQECWWYDEKGRKFFRTGDVGFIDEEGF  431 (549)
T ss_dssp             CTTGGGTSEEECTTCCEEEEEEEEEEECTTSC
T ss_pred             ChhhhhhhhhccCCCCceEccCcEEEEcCCce
Confidence            99999999977788899999999999999985

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=4e-64  Score=548.51  Aligned_cols=416  Identities=18%  Similarity=0.178  Sum_probs=325.0

Q ss_pred             hhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCccee
Q 008134           42 VARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFE  121 (576)
Q Consensus        42 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~  121 (576)
                      +...+..-|.++..+++.|+++++..++   ....+++...+++++|+++++++||++|+++            ++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~----   62 (563)
T 1amu_A            2 VNSSKSILIHAQNKNGTHEEEQYLFAVN---NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------EN----   62 (563)
T ss_dssp             ---------------CCCHHHHHHHHTT---CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TT----
T ss_pred             cCcCCCccccccccCCHHHHHHHHHHhC---CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEe------------CC----
Confidence            3344444488899999999988877777   5666677778999999999999999999986            33    


Q ss_pred             eecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhcc
Q 008134          122 KLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNET  201 (576)
Q Consensus       122 ~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~  201 (576)
                             +++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.++.+++.++++++
T Consensus        63 -------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~  135 (563)
T 1amu_A           63 -------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDS  135 (563)
T ss_dssp             -------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHH
T ss_pred             -------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhc
Confidence                   3799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEE
Q 008134          202 QVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIM  281 (576)
Q Consensus       202 ~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  281 (576)
                      +++++|++.+....+...    .....++.++....                     ..  ........+..++++++|+
T Consensus       136 ~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~d~a~i~  188 (563)
T 1amu_A          136 QARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI---------------------KI--REGTNLHVPSKSTDLAYVI  188 (563)
T ss_dssp             TCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT---------------------TT--SCCSCCCCCCCTTSEEEEE
T ss_pred             CCCEEEEcCchhhhhhhc----cccCceeeecchhh---------------------cc--ccCccCCCCCCCCCeEEEE
Confidence            999999998765443321    11122332221100                     00  0111112345688999999


Q ss_pred             eecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhc
Q 008134          282 YTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIK  361 (576)
Q Consensus       282 ~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~  361 (576)
                      |||||||.||||+++|+++.+.+.+....+ ++.++|++++++|++|+.+++.++.+|+.|+++++.+.....+.     
T Consensus       189 ~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~-----  262 (563)
T 1amu_A          189 YTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDF-----  262 (563)
T ss_dssp             EEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCH-----
T ss_pred             ECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCH-----
Confidence            999999999999999999999988888888 89999999999999999999888999999999999544322222     


Q ss_pred             cCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHH
Q 008134          362 KGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA  441 (576)
Q Consensus       362 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  441 (576)
                      ..+...++++++|++.++|+++..+...                                                    
T Consensus       263 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------------------------------  290 (563)
T 1amu_A          263 VKFEQYINQKEITVITLPPTYVVHLDPE----------------------------------------------------  290 (563)
T ss_dssp             HHHHHHHHHTTCCEEEECHHHHTTSCTT----------------------------------------------------
T ss_pred             HHHHHHHHHcCCcEEEeCHHHHHHHHhc----------------------------------------------------
Confidence            2233449999999999999998765321                                                    


Q ss_pred             HhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCC---CCCCccCCCCCCcEEEEeecCCCCC
Q 008134          442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGY  518 (576)
Q Consensus       442 ~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~~~~ivd~~~~~~  518 (576)
                       ..++||.+++||+++++++.++|.+.  ++++|.||+||+++.++......   ....++|+|++|++++|+| ++++.
T Consensus       291 -~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~  366 (563)
T 1amu_A          291 -RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL  366 (563)
T ss_dssp             -TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB
T ss_pred             -ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCC
Confidence             01489999999999999999999874  78999999999987766543322   2447899999999999999 66654


Q ss_pred             cCCCCCCCCceEEEccCcccccccCCcccchhhhcccc--cccceeeeCCeecccCccC
Q 008134          519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF--HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       519 ~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~--~g~~~~~TGDlg~~d~d~e  575 (576)
                         +++|+.|||+|+|+++++|||++|+.|+++|..++  +|.+||+|||+|++|+||.
T Consensus       367 ---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~  422 (563)
T 1amu_A          367 ---KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN  422 (563)
T ss_dssp             ---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred             ---CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCe
Confidence               66999999999999999999999999999996443  4567999999999999985

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.4e-63  Score=543.51  Aligned_cols=405  Identities=23%  Similarity=0.279  Sum_probs=332.8

Q ss_pred             ccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCC
Q 008134           76 VPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVD  155 (576)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g  155 (576)
                      .+++. .|+.++|.++++++|+++|++...          ++        ...+++||+||.++++++|++|+++|+++|
T Consensus        15 ~~~~~-~tl~~~l~~~a~~~p~~~a~~a~~----------~~--------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~g   75 (550)
T 3rix_A           15 YPLED-GTAGEQLHKAMKRYALVPGTIAFT----------DA--------HIEVNITYAEYFEMSVRLAEAMKRYGLNTN   75 (550)
T ss_dssp             SCCCC-SCHHHHHHHHHHHHHTSTTCEEEE----------ET--------TTCCEEEHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             CCccc-CCHHHHHHHHHHhCCCCceEEEee----------ec--------CCCcEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence            33444 799999999999999999986321          11        111479999999999999999999999999


Q ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCC
Q 008134          156 TRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEND  235 (576)
Q Consensus       156 d~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~  235 (576)
                      |+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+......++.+..++.++..
T Consensus        76 d~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (550)
T 3rix_A           76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK  155 (550)
T ss_dssp             CEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS
T ss_pred             CEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC
Confidence            99999999999999999999999999999999999999999999999999999999888888877777888888887654


Q ss_pred             CCCCCCCCCCCCCCceEeehHHHHHcCCCCC------CCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh
Q 008134          236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSP------VDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT  309 (576)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~  309 (576)
                      ...           ....++.++........      .+.....++++++|+|||||||.||||+++|+++++.+.....
T Consensus       156 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~  224 (550)
T 3rix_A          156 TDY-----------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD  224 (550)
T ss_dssp             SCB-----------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTC
T ss_pred             ccc-----------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhh
Confidence            221           12345566554322211      1112234678999999999999999999999999988877765


Q ss_pred             hC--CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHH
Q 008134          310 LI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFD  384 (576)
Q Consensus       310 ~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~  384 (576)
                      .+  ..+.++|++++.+|++|+++++..+.+++.|+++++.   ++..+.+.           ++++++|+++++|+++.
T Consensus       225 ~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~  293 (550)
T 3rix_A          225 PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFS  293 (550)
T ss_dssp             TTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHH
T ss_pred             hhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHH
Confidence            52  2678899999999999999998889999999999994   34444444           99999999999999999


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHH
Q 008134          385 RVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRF  464 (576)
Q Consensus       385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~  464 (576)
                      .+......                                               .+...++||.+++||+++++++.++
T Consensus       294 ~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~~  326 (550)
T 3rix_A          294 FFAKSTLI-----------------------------------------------DKYDLSNLHEIASGGAPLSKEVGEA  326 (550)
T ss_dssp             HHHHCCGG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHhCccc-----------------------------------------------cccCcccccEEEEecCCCCHHHHHH
Confidence            88653110                                               0111258999999999999999999


Q ss_pred             HHhhhCCc-eecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccC
Q 008134          465 INICMGAP-IGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFN  543 (576)
Q Consensus       465 ~~~~~~~~-l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~  543 (576)
                      |.+.++.. ++|.||+||+++.++.........+++|+|+|+++++|+|++++..   +++|+.|||+|+|++++.|||+
T Consensus       327 ~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~  403 (550)
T 3rix_A          327 VAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSGYVN  403 (550)
T ss_dssp             HHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEETT
T ss_pred             HHHHcCCCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcC---CCCCCCeEEEEeCCCcchhhcC
Confidence            99998875 8999999999988877766666778999999999999999766655   5699999999999999999999


Q ss_pred             CcccchhhhcccccccceeeeCCeecccCccC
Q 008134          544 NPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       544 ~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|+.|++.|  +.+|  ||+|||+|++|+||.
T Consensus       404 ~~~~t~~~~--~~~g--~~~TGDl~~~~~dG~  431 (550)
T 3rix_A          404 NPEATNALI--DKDG--WLHSGDIAYWDEDEH  431 (550)
T ss_dssp             CHHHHHHHB--CTTS--CEEEEEEEEECTTCC
T ss_pred             Chhhhhhhc--CCCC--CeecCcEEEEeCCce
Confidence            999999999  6677  999999999999984

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.9e-63  Score=539.41  Aligned_cols=399  Identities=22%  Similarity=0.268  Sum_probs=329.3

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      +..+.|...+++++|+++++++||++|+++.+          +|           +++||+||.++++++|++|+++|++
T Consensus        14 ~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A           14 PDIYIPKNLPLHSYVLENLSNHSSKPCLINGA----------NG-----------DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             CCCCCCSSCCHHHHHTTTGGGSTTSEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHHHhhcCCCceEEEECC----------CC-----------CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            44556666899999999999999999998631          23           3799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEec
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....... . ..++.++
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~  150 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-D-VKVMCVD  150 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-T-CEEEESS
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-C-ceEEEec
Confidence            9999999999999999999999999999999999999999999999999999999998877776654332 1 2344444


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh----
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----  309 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----  309 (576)
                      ....             ....++++...... ..+.....++++++|+|||||||.||||+++|+++++.+.....    
T Consensus       151 ~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~  216 (536)
T 3ni2_A          151 SAPD-------------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP  216 (536)
T ss_dssp             CCCT-------------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC
T ss_pred             CCCC-------------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc
Confidence            3211             23456666543322 22334567899999999999999999999999999988776654    


Q ss_pred             hCCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDR  385 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~  385 (576)
                      .+ .+.++|++++.+|++|++++.. ++.+|..|+++++.+   +..+.+.           ++++++|++.++|+++..
T Consensus       217 ~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~  284 (536)
T 3ni2_A          217 NL-YFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMS  284 (536)
T ss_dssp             SS-CCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHH
T ss_pred             cc-cCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHH
Confidence            33 6789999999999999999865 788899999999943   3334444           999999999999999998


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHH
Q 008134          386 VREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFI  465 (576)
Q Consensus       386 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~  465 (576)
                      +.+....                                               .....++||.+++||+++++++.++|
T Consensus       285 l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~  317 (536)
T 3ni2_A          285 IAKSPDL-----------------------------------------------DKHDLSSLRMIKSGGAPLGKELEDTV  317 (536)
T ss_dssp             HHTCSCG-----------------------------------------------GGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred             HHhCccc-----------------------------------------------ccCCCccceEEEECCCCCCHHHHHHH
Confidence            8653110                                               01112589999999999999999999


Q ss_pred             Hhhh-CCceecccCcccccCCcccc-----CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccc
Q 008134          466 NICM-GAPIGQAYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTA  539 (576)
Q Consensus       466 ~~~~-~~~l~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~  539 (576)
                      ++.+ +++++|.||+||++++++..     .......+++|+|++|++++|+|++++..   +++|+.|||+|+|+++++
T Consensus       318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~  394 (536)
T 3ni2_A          318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGAS---LPRNQPGEICIRGDQIMK  394 (536)
T ss_dssp             HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCB---CCTTCCEEEEEESTTSCS
T ss_pred             HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcC---CCCCCccEEEEeCcccch
Confidence            9988 89999999999998765433     22234558999999999999999766665   569999999999999999


Q ss_pred             cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          540 GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       540 GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |||++|+.|++.|  +.+|  ||||||+|++|+||.
T Consensus       395 GY~~~p~~t~~~~--~~~g--~~~TGDl~~~~~dG~  426 (536)
T 3ni2_A          395 GYLNDPEATSRTI--DKEG--WLHTGDIGYIDDDDE  426 (536)
T ss_dssp             EETTCHHHHHHHB--CTTS--CEEEEEEEEECTTSC
T ss_pred             hhcCChhHHHhhc--cCCC--ceEcccEEEEcCCce
Confidence            9999999999999  5667  999999999999985

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=2.5e-62  Score=532.48  Aligned_cols=397  Identities=20%  Similarity=0.255  Sum_probs=323.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++++||++|+++.+          +         +..+++||+||.++++++|++|+++|+++||+|+++
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~   78 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL   78 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            689999999999999999998531          1         122579999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+......++.++.++.++.....   
T Consensus        79 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  155 (541)
T 1v25_A           79 GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE---  155 (541)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT---
T ss_pred             cCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc---
Confidence            99999999999999999999999999999999999999999999999998887777766666667777776543210   


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHH--HhhCCCCCCCcE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI--KTLIPNPGRSDV  319 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~~d~  319 (576)
                               ...+++++......    .....++++++|+|||||||.||||+++|+++++.....  ...+ .++++|+
T Consensus       156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~  221 (541)
T 1v25_A          156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV  221 (541)
T ss_dssp             ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred             ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence                     12356555432211    134567899999999999999999999999998776653  2345 7889999


Q ss_pred             EEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCc
Q 008134          320 YLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGG  399 (576)
Q Consensus       320 ~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~  399 (576)
                      +++.+|++|++++..++.+++.|+++++.+..  .+     +..+++.++++++|+++++|+++..+.+......     
T Consensus       222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~--~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----  289 (541)
T 1v25_A          222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPR--LD-----PASLVELFDGEGVTFTAGVPTVWLALADYLESTG-----  289 (541)
T ss_dssp             EEECSCTTSHHHHTHHHHHHHHTCEEEECTTC--CS-----HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----
T ss_pred             EEEeccchhhhHHHHHHHHHhcCceEEeeCCC--CC-----HHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----
Confidence            99999999999987788899999999994321  11     1223334999999999999999999876533210     


Q ss_pred             hhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCc
Q 008134          400 LTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGL  479 (576)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~  479 (576)
                                                                ...++||.+++||+++++++.++| +.+|++++|.||+
T Consensus       290 ------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~  326 (541)
T 1v25_A          290 ------------------------------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGL  326 (541)
T ss_dssp             ------------------------------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEEC
T ss_pred             ------------------------------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccc
Confidence                                                      112489999999999999999999 5679999999999


Q ss_pred             ccccCCccccCCCC-----------CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccc
Q 008134          480 TETCAGSTFSEWDD-----------PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKT  548 (576)
Q Consensus       480 TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t  548 (576)
                      ||++++++......           ....++|+|+||++++|+| ++++.++ .+.++.|||+|+||+++.|||++|+.|
T Consensus       327 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~p~~t  404 (541)
T 1v25_A          327 TETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGNEEAT  404 (541)
T ss_dssp             GGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTCHHHH
T ss_pred             cccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCChhhh
Confidence            99988766554321           1237899999999999999 6665533 112468999999999999999999999


Q ss_pred             hhhhcccccccceeeeCCeecccCccC
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++|  .++|  ||+|||+|++|+||.
T Consensus       405 ~~~f--~~~g--~~~TGDlg~~d~dG~  427 (541)
T 1v25_A          405 RSAL--TPDG--FFRTGDIAVWDEEGY  427 (541)
T ss_dssp             HTTB--CTTS--CEEEEEEEEECTTCC
T ss_pred             hhhc--cCCC--CeEcCCEEEEcCCce
Confidence            9999  5577  999999999999984

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3.1e-63  Score=546.37  Aligned_cols=381  Identities=15%  Similarity=0.107  Sum_probs=307.8

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (576)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (576)
                      .....|++++|+++++++||++|+++            .+           +++||+||+++++++|++|+++|+++||+
T Consensus        23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~   79 (620)
T 4dg8_A           23 LYAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVC   79 (620)
T ss_dssp             GGGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCE
T ss_pred             CCCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence            34457999999999999999999986            33           37999999999999999999999999999


Q ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~  237 (576)
                      |+|+++|++++++++|||+|+|+++|||||.++.+++.+++++++++++|++........       ...          
T Consensus        80 V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~-------~~~----------  142 (620)
T 4dg8_A           80 LGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN-------GLP----------  142 (620)
T ss_dssp             EEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT-------TSC----------
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc-------CCc----------
Confidence            999999999999999999999999999999999999999999999999997654321100       000          


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCC
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS  317 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~  317 (576)
                                    ...+....  ............++++|||+|||||||.||||+++|+++.+.+.. ...+ .+.++
T Consensus       143 --------------~~~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~  204 (620)
T 4dg8_A          143 --------------CVPVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQ  204 (620)
T ss_dssp             --------------EEEGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTT
T ss_pred             --------------eeeeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCC
Confidence                          11111100  001111123456899999999999999999999999999887655 4455 88999


Q ss_pred             cEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhc
Q 008134          318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEK  397 (576)
Q Consensus       318 d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~  397 (576)
                      |++++++|++|+.+++.++.+|+.|+++++.+... .+.     ..+.+.++++++|+++++|++++.+.+...      
T Consensus       205 d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~-----~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------  272 (620)
T 4dg8_A          205 MRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGP-LDP-----GVLRQLIGERGADSAWLTASLFNTLVDLDP------  272 (620)
T ss_dssp             CEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSS-CCH-----HHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------
T ss_pred             CEEEEECccCHHHHHHHHHHHHhcCCEEEeCcccc-CCH-----HHHHHHHHHhCCcEEEccHHHHHHHHhcCh------
Confidence            99999999999999999999999999999853221 111     223444999999999999999998865210      


Q ss_pred             CchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecc
Q 008134          398 GGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQA  476 (576)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~  476 (576)
                                                                  ...++||.+++|||++++++.+.+...+ +++++|.
T Consensus       273 --------------------------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~  308 (620)
T 4dg8_A          273 --------------------------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNG  308 (620)
T ss_dssp             --------------------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred             --------------------------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEee
Confidence                                                        0114899999999999998877776654 8999999


Q ss_pred             cCcccccCCccccCCCC----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134          477 YGLTETCAGSTFSEWDD----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (576)
Q Consensus       477 YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f  552 (576)
                      ||+||++++++......    ....++|+|++|++++|+| +++..  .+++|++|||||+|+++++||||+|+.|+++|
T Consensus       309 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f  385 (620)
T 4dg8_A          309 YGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQE--IAEPDRAGEIVAFGAGLAQGYRNDAARTRASF  385 (620)
T ss_dssp             ECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCB--CCSSSCCEEEEEEETTCCSEETTCHHHHHHHE
T ss_pred             EchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCC--CCCCCCceEEEEeccccccccCCChhhhhhhh
Confidence            99999998776543322    2347999999999999999 55543  25689999999999999999999999999999


Q ss_pred             ccccc-cc--ceeeeCCeecccCccC
Q 008134          553 KVNFH-CV--WMLCICLYVSCDKTLE  575 (576)
Q Consensus       553 ~~~~~-g~--~~~~TGDlg~~d~d~e  575 (576)
                      +.++. |.  +||||||+|++|+||.
T Consensus       386 ~~~p~~~~~~~~yrTGDl~~~~~dG~  411 (620)
T 4dg8_A          386 VELPYRGRLLRAYRTGDRARYDEQGR  411 (620)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECTTSC
T ss_pred             ccCCCCCCCceEEeCCCEEEECCCCe
Confidence            76652 32  7999999999999985

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=2.7e-62  Score=532.61  Aligned_cols=393  Identities=17%  Similarity=0.179  Sum_probs=324.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      ....++.++|+++++++||++|+++            ++           +++||+||.++++++|++|+++|+++||+|
T Consensus        27 ~~~~tl~~~l~~~a~~~p~~~Al~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V   83 (544)
T 3o83_A           27 WIDQPLTRILTVGVQSHPHSLAIIC------------GE-----------RQLSYIELDRLSTNLATRLAEKGLGKGDTA   83 (544)
T ss_dssp             CCCCCTTHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CCCCCHHHHHHHHHHhCCCceEEEc------------CC-----------CceeHHHHHHHHHHHHHHHHHCCCCCCCEE
Confidence            4457999999999999999999986            33           379999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEec
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....     ...............++.++
T Consensus        84 ~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (544)
T 3o83_A           84 LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLN  163 (544)
T ss_dssp             EECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEET
T ss_pred             EEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEec
Confidence            9999999999999999999999999999999999999999999999999987653     33344444445556666654


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCC
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPN  313 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~  313 (576)
                      ....              ...+.++...............++++++|+|||||||.||||+++|+++.+.+.+....+ +
T Consensus       164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~  228 (544)
T 3o83_A          164 HQAT--------------DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G  228 (544)
T ss_dssp             CCTT--------------SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred             CCcc--------------ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence            4211              123455554433333333456789999999999999999999999999999999999888 9


Q ss_pred             CCCCcEEEEecChHHHHHHHH--HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          314 PGRSDVYLAYLPLAHVLELAA--ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       314 ~~~~d~~l~~~pl~~~~~~~~--~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      +.++|++++.+|++|.+++..  ++.+|..|+++++.+   +..+.+.           ++++++|+++++|+++..+++
T Consensus       229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  297 (544)
T 3o83_A          229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE  297 (544)
T ss_dssp             CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred             CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence            999999999999999998864  788999999999943   3334444           999999999999999999877


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      .......                                               ..++||.+++||+++++++.+++.+.
T Consensus       298 ~~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~  330 (544)
T 3o83_A          298 KAAQYKD-----------------------------------------------QIQSLKLLQVGGASFPESLARQVPEV  330 (544)
T ss_dssp             HHTTTHH-----------------------------------------------HHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred             chhhccc-----------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHH
Confidence            5321110                                               11489999999999999999999999


Q ss_pred             hCCceecccCcccccCCccccCCCC-CCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcc
Q 008134          469 MGAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPG  546 (576)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~  546 (576)
                      ++++++|.||+||+++.++...... ....++|+|+ ++++++|+| ++++.   +++|++|||+|+|++++.|||++|+
T Consensus       331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~  406 (544)
T 3o83_A          331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYRE---VPEGEIGMLATRGPYTFCGYYQSPE  406 (544)
T ss_dssp             HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred             hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCC---CCCCCeeEEEEecCCcchhhcCChh
Confidence            9999999999999875544322211 1236899996 899999999 77665   6799999999999999999999999


Q ss_pred             cchhhhcccccccceeeeCCeecccCccC
Q 008134          547 KTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       547 ~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .|+++|  +++|  ||+|||+|++|+||.
T Consensus       407 ~t~~~f--~~~g--~~~TGDlg~~~~dG~  431 (544)
T 3o83_A          407 HNSQVF--DEDN--YYYSGDLVQRTPDGN  431 (544)
T ss_dssp             HHHHHB--CTTC--CEEEEEEEEECTTSC
T ss_pred             hhhhhC--CCCC--CeEcCCEEEEcCCCC
Confidence            999999  5677  999999999999985

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=6e-62  Score=532.93  Aligned_cols=401  Identities=14%  Similarity=0.153  Sum_probs=330.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      .+.++++|+++|+++||++|+++.+.         +         +..+++||+||.++++++|++|+++|+++||+|+|
T Consensus        55 ~n~~~~~l~~~a~~~pd~~Al~~~~~---------~---------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l  116 (580)
T 3etc_A           55 FNFAYDVVDVYARDSPEKLAMIWCDD---------Y---------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML  116 (580)
T ss_dssp             CCHHHHTHHHHHHHCTTCEEEEEEES---------S---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             chHHHHHHHHHHhhCCCCEEEEEEcC---------C---------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            35666999999999999999997531         1         23368999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh--hHHHHhhhcCCCc-cEEEEecCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL--KKLSAVSSSLKTI-KNVIYFENDGS  237 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~l~~~~~~~~~~-~~vv~~~~~~~  237 (576)
                      +++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..  +.+.+....++.+ ..++.++....
T Consensus       117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (580)
T 3etc_A          117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL  196 (580)
T ss_dssp             ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred             EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence            99999999999999999999999999999999999999999999999987754  5666655555554 55565554321


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCC---CCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDP---SLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                  ....++.+...........+   ....++|+++|+|||||||.||||+++|.++++.+......+ .+
T Consensus       197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~  263 (580)
T 3etc_A          197 ------------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NV  263 (580)
T ss_dssp             ------------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CC
T ss_pred             ------------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CC
Confidence                        12356666665443322222   256789999999999999999999999999998887777677 89


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  393 (576)
                      .+++++++.+|++|+.+++. ++.++..|+++++.+...+ +     +..+++.|+++++|+++++|++++.|.....  
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--  335 (580)
T 3etc_A          264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRF-E-----AKNMLEKASKYGVTTFCAPPTIYRFLIKEDL--  335 (580)
T ss_dssp             CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSC-C-----HHHHHHHHHHHTCCEEEECHHHHHHHHTSCC--
T ss_pred             CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCC-C-----HHHHHHHHHHHCCeEEEccHHHHHHHHhccc--
Confidence            99999999999999988886 7788999999988532211 1     1223444999999999999999998865210  


Q ss_pred             HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCce
Q 008134          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l  473 (576)
                                                                    .....++||.+++|||++++++.++|.+.+|+++
T Consensus       336 ----------------------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i  369 (580)
T 3etc_A          336 ----------------------------------------------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL  369 (580)
T ss_dssp             -------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCC
T ss_pred             ----------------------------------------------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeE
Confidence                                                          0111258999999999999999999999999999


Q ss_pred             ecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc-----CcccccccCCcccc
Q 008134          474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-----FNVTAGYFNNPGKT  548 (576)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G-----~~v~~GY~~~~~~t  548 (576)
                      +|.||+||+++.++.........+++|+|+||++++|+| ++++.   +++|+.|||+|+|     +++++||+++|+.|
T Consensus       370 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~---~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t  445 (580)
T 3etc_A          370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRL---CEVGEEGEIVINTMEGKPVGLFVHYGKDPERT  445 (580)
T ss_dssp             EEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTCCCTTCCCEETTCHHHH
T ss_pred             ecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCC---CCCCCceEEEEecCCCCCCeeeccccCCHhHH
Confidence            999999999887776655566778999999999999999 66654   6799999999997     88999999999999


Q ss_pred             hhhhcccccccceeeeCCeecccCccC
Q 008134          549 SEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       549 ~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +++|   .+|  ||+|||+|++|+||.
T Consensus       446 ~~~f---~~g--wy~TGDlg~~d~dG~  467 (580)
T 3etc_A          446 EETW---HDG--YYHTGDMAWMDEDGY  467 (580)
T ss_dssp             HHHE---ETT--EEEEEEEEEECTTSC
T ss_pred             Hhhc---CCC--EEecCcEEEECCCCc
Confidence            9999   467  999999999999985

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=7.6e-63  Score=529.28  Aligned_cols=401  Identities=16%  Similarity=0.142  Sum_probs=307.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .++.++|+++++++||++|+++.+..        ++.      .+..+++||+||.++++++|++|+++|+ +||+|+|+
T Consensus        24 ~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~   88 (480)
T 3t5a_A           24 RSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVIS   88 (480)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEE
T ss_pred             ccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEE
Confidence            79999999999999999999985311        011      1234689999999999999999999996 99999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccC---CCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc--cEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYS---SLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI--KNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~--~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++|+++|||++   .++.+++.+++++++++++|++....+.+.+.....+..  ..++.++.. 
T Consensus        89 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (480)
T 3t5a_A           89 APQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL-  167 (480)
T ss_dssp             CCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS-
T ss_pred             cCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc-
Confidence            99999999999999999999999999   788999999999999999999998877766654332221  122222211 


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~  316 (576)
                                            .. ............++++++|+|||||||.||||+++|+++++.+.+....+ .+..
T Consensus       168 ----------------------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~  223 (480)
T 3t5a_A          168 ----------------------DL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT  223 (480)
T ss_dssp             ----------------------CT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred             ----------------------cc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence                                  11 11111223456789999999999999999999999999999998888777 6666


Q ss_pred             ------CcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          317 ------SDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       317 ------~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                            +|++++.+|++|++++.. ++.+|+.|+++++.++..+...    +..+...++++++| +.++|+++..++..
T Consensus       224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t-~~~~p~~~~~l~~~  298 (480)
T 3t5a_A          224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQR----PARWMHLMASDFHA-FSAAPNFAFELAAR  298 (480)
T ss_dssp             TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHC----THHHHHHTTSSSEE-EEEECHHHHHHHHH
T ss_pred             ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHC----HHHHHHHHHhhcee-EeeChHHHHHHHHh
Confidence                  999999999999999764 7889999999999654322111    12233449999999 88999998887653


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ......                                           ......++||.+++||+++++++.++|.+.+
T Consensus       299 ~~~~~~-------------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  335 (480)
T 3t5a_A          299 RTTDDD-------------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRF  335 (480)
T ss_dssp             HCCTGG-------------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHS
T ss_pred             hcCccc-------------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHH
Confidence            210000                                           0011225899999999999999999999887


Q ss_pred             C------CceecccCcccccCCccccCCCC-------------------------CCCCccCCCCCCcEEEEeecCCCCC
Q 008134          470 G------APIGQAYGLTETCAGSTFSEWDD-------------------------PSVGRVGPPVPCCYIKLVSWDEGGY  518 (576)
Q Consensus       470 ~------~~l~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~~~~~~~ivd~~~~~~  518 (576)
                      +      +.++|.||+||+++.++......                         ....++|+|++ ++++|+|++++..
T Consensus       336 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~  414 (480)
T 3t5a_A          336 ARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIE  414 (480)
T ss_dssp             GGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEE
T ss_pred             hhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcC
Confidence            3      47999999999998877654432                         12358999999 9999999555554


Q ss_pred             cCCCCCCCCceEEEccCcccccccCCcccchhhhccc-------ccccceeeeCCeecccCccC
Q 008134          519 KTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN-------FHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       519 ~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~-------~~g~~~~~TGDlg~~d~d~e  575 (576)
                         +++|++|||+|+|+++++|||++|++|+++|..+       .++++||||||+|++| ||.
T Consensus       415 ---~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~  474 (480)
T 3t5a_A          415 ---CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK  474 (480)
T ss_dssp             ---CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTE
T ss_pred             ---CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCE
Confidence               6799999999999999999999999999999411       1245699999999997 874

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=8.9e-62  Score=525.20  Aligned_cols=392  Identities=20%  Similarity=0.232  Sum_probs=319.8

Q ss_pred             cccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCC
Q 008134           75 EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNV  154 (576)
Q Consensus        75 ~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~  154 (576)
                      ..+.+...|+.++|+++++++|+++|+++.+                     ..+++||+||.++++++|++|+++|+++
T Consensus         9 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~---------------------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~   67 (517)
T 3r44_A            9 VDDDDKMKNIGWMLRQRATVSPRLQAYVEPS---------------------TDVRMTYAQMNALANRCADVLTALGIAK   67 (517)
T ss_dssp             ---CGGGGCHHHHHHHHHHHSTTSEEEEEGG---------------------GTEEEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             CCCcccccCHHHHHHHHHHhCCCCeEEEeCC---------------------cCceeeHHHHHHHHHHHHHHHHHcCCCC
Confidence            3344666899999999999999999998631                     1247999999999999999999999999


Q ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134          155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (576)
Q Consensus       155 gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~  234 (576)
                      ||+|+|+++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++....+.+............++.+. 
T Consensus        68 gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-  146 (517)
T 3r44_A           68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI-  146 (517)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE-
T ss_pred             cCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc-
Confidence            9999999999999999999999999999999999999999999999999999999988877766654333221111100 


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                      ...++.+...... ...+.....+++++||+|||||||.||||+++|+++++.+......+ ++
T Consensus       147 ----------------~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~  208 (517)
T 3r44_A          147 ----------------GADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DV  208 (517)
T ss_dssp             ----------------EHHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CC
T ss_pred             ----------------CcccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CC
Confidence                            0012333333222 22233556789999999999999999999999999999999998888 99


Q ss_pred             CCCcEEEEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      .++|++++.+|++|+.++...+.+++.|+++++.   ++..+.+.           +.++++|++.++|+++..+.....
T Consensus       209 ~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~  277 (517)
T 3r44_A          209 RYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPE  277 (517)
T ss_dssp             CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHH
T ss_pred             CCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCcc
Confidence            9999999999999999998866666699999984   34444444           999999999999999998876422


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ..                                               +...++||.+++||+++++++.++|... ++
T Consensus       278 ~~-----------------------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~  309 (517)
T 3r44_A          278 FA-----------------------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NI  309 (517)
T ss_dssp             HH-----------------------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TC
T ss_pred             cc-----------------------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CC
Confidence            11                                               1122589999999999999999999887 99


Q ss_pred             ceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          472 PIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      +++|.||+||+++.++.....  ....+++|+|+++++++|+| +++..   ++.| .|||+|+|++++.|||++|+.|+
T Consensus       310 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g-~GEl~v~g~~v~~GY~~~p~~t~  384 (517)
T 3r44_A          310 EVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVI---REHG-EGEVVIKSDILLKEYWNRPEATR  384 (517)
T ss_dssp             EEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCE---ESSE-EEEEEEEETTSCSEETTCHHHHH
T ss_pred             cEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCC---CCCC-CeEEEEeCcchhhhhCCChhhhH
Confidence            999999999998877654433  23458999999999999999 66654   3466 89999999999999999999999


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|   .+|  ||||||+|++|+||.
T Consensus       385 ~~f---~~g--~~~TGDl~~~~~dG~  405 (517)
T 3r44_A          385 DAF---DNG--WFRTGDIGEIDDEGY  405 (517)
T ss_dssp             HTE---ETT--EEEEEEEEEECTTSC
T ss_pred             hhh---cCC--CEecceeEEEcCCee
Confidence            999   567  999999999999985

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=9.1e-62  Score=523.37  Aligned_cols=384  Identities=23%  Similarity=0.311  Sum_probs=314.4

Q ss_pred             HHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc
Q 008134           86 ALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC  165 (576)
Q Consensus        86 ~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s  165 (576)
                      ++|+++++++|+++|+.....         +|+           ++||+||.++++++|++|+++|+++||+|+++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~---------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~   63 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA---------AGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS   63 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET---------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred             hHHHHHHHhCCCCceEEEecC---------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            478999999999999986320         333           799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCC
Q 008134          166 VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSG  245 (576)
Q Consensus       166 ~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~  245 (576)
                      +++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+.........  .++.++....        
T Consensus        64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------  133 (503)
T 4fuq_A           64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR--------  133 (503)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC--------
T ss_pred             HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc--------
Confidence            999999999999999999999999999999999999999999998876655554433221  3333332211        


Q ss_pred             CCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecC
Q 008134          246 GISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLP  325 (576)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~p  325 (576)
                             ..+.+.... ...........++++++|+|||||||.||||+++|+++++.+......+ +++++|++++.+|
T Consensus       134 -------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p  204 (503)
T 4fuq_A          134 -------GSLTDAAAG-ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALP  204 (503)
T ss_dssp             -------SHHHHHHHT-SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSC
T ss_pred             -------cccchhhhc-CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCC
Confidence                   112222221 1222233456789999999999999999999999999999999998888 9999999999999


Q ss_pred             hHHHHHHHH-HHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchh
Q 008134          326 LAHVLELAA-ESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT  401 (576)
Q Consensus       326 l~~~~~~~~-~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  401 (576)
                      ++|.+++.. .+.+++.|+++++.   ++..+.+.           ++  ++|+++++|+++..++.....         
T Consensus       205 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~---------  262 (503)
T 4fuq_A          205 IYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRL---------  262 (503)
T ss_dssp             SSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTC---------
T ss_pred             hHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCc---------
Confidence            999998765 67889999999984   44444444           65  899999999999988653110         


Q ss_pred             HHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCccc
Q 008134          402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTE  481 (576)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE  481 (576)
                                                            .+...++||.+++||+++++++.+.|.+.+|++++|.||+||
T Consensus       263 --------------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE  304 (503)
T 4fuq_A          263 --------------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE  304 (503)
T ss_dssp             --------------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred             --------------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence                                                  001125899999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccce
Q 008134          482 TCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWM  561 (576)
Q Consensus       482 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~  561 (576)
                      +++.++.........+++|+|++|++++|+|+++++.   +++|+.|||+|+|+++++|||++|+.|+++|  ..+|  |
T Consensus       305 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~~~g--~  377 (503)
T 4fuq_A          305 TNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKE---LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF--RDDG--F  377 (503)
T ss_dssp             TEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHTB--CTTS--C
T ss_pred             cCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCC---CcCCCceEEEEECCchhhhhcCChhhhHhhh--CCCC--C
Confidence            9877654443445568999999999999999777765   5699999999999999999999999999999  5577  9


Q ss_pred             eeeCCeecccCccC
Q 008134          562 LCICLYVSCDKTLE  575 (576)
Q Consensus       562 ~~TGDlg~~d~d~e  575 (576)
                      |+|||+|++|+||.
T Consensus       378 ~~TGDl~~~~~dG~  391 (503)
T 4fuq_A          378 FITGDLGKIDERGY  391 (503)
T ss_dssp             EEEEEEEEECTTCE
T ss_pred             eEcceeEEEcCCCc
Confidence            99999999999984

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1e-61  Score=528.33  Aligned_cols=398  Identities=24%  Similarity=0.310  Sum_probs=325.7

Q ss_pred             CCCCCCHHH-HHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           78 WKGASTMAA-LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        78 ~~~~~tl~~-~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      .+...++.+ +|.++++++ |++|+++..          ++           +++||+||.++++++|++|+++|+++||
T Consensus        21 ~p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd   78 (548)
T 2d1s_A           21 EEGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDG   78 (548)
T ss_dssp             CSSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred             CCCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            344468999 899999999 999998521          12           3799999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCC
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      +|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+......++....++.++...
T Consensus        79 ~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (548)
T 2d1s_A           79 RIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKV  158 (548)
T ss_dssp             EEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSS
T ss_pred             EEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcc
Confidence            99999999999999999999999999999999999999999999999999999988777766655555456666655421


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCC-----C-CCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPS-----Q-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL  310 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~  310 (576)
                      ..           ....+++++.........+.....     + +++++|+|||||||.||||+++|+++++.+......
T Consensus       159 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~  227 (548)
T 2d1s_A          159 DY-----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDP  227 (548)
T ss_dssp             CB-----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCT
T ss_pred             cc-----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhch
Confidence            10           012346666654322101111122     4 899999999999999999999999999988887766


Q ss_pred             ---CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHH
Q 008134          311 ---IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIF  383 (576)
Q Consensus       311 ---~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l  383 (576)
                         + +++++|++++.+|++|++++.. ++.++ .|+++++.+   +..+.+.           |+++++|+++++|+++
T Consensus       228 ~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~  294 (548)
T 2d1s_A          228 IYGN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLF  294 (548)
T ss_dssp             TTSC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHH
T ss_pred             hhcc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHH
Confidence               5 7889999999999999999987 55667 999999843   4444444           9999999999999999


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Q 008134          384 DRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQR  463 (576)
Q Consensus       384 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~  463 (576)
                      ..+.+....                                               .+...++||.+++||+++++++.+
T Consensus       295 ~~l~~~~~~-----------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~~  327 (548)
T 2d1s_A          295 AILNKSELL-----------------------------------------------NKYDLSNLVEIASGGAPLSKEVGE  327 (548)
T ss_dssp             HHHHHCSCG-----------------------------------------------GGSCCTTCCEEEECSSCCCHHHHH
T ss_pred             HHHHhCccc-----------------------------------------------ccccccceeEEEEcCccCCHHHHH
Confidence            988652110                                               001125899999999999999999


Q ss_pred             HHHhhh-CCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccccc
Q 008134          464 FINICM-GAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYF  542 (576)
Q Consensus       464 ~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~  542 (576)
                      +|++.+ +++++|.||+||+++.++.........+++|+|+|+++++|+|+++++.   +++|+.|||+|+|+++++|||
T Consensus       328 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~  404 (548)
T 2d1s_A          328 AVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKS---LGPNRRGEVCVKGPMLMKGYV  404 (548)
T ss_dssp             HHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSEET
T ss_pred             HHHHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCcc---CCCCCCeEEEECCHHHhhhhc
Confidence            999988 6889999999999887766444445568999999999999999767665   568999999999999999999


Q ss_pred             CCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          543 NNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       543 ~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|+.|+++|  +++|  ||+|||+|++|+||.
T Consensus       405 ~~~~~t~~~f--~~~g--~~~TGDl~~~~~dG~  433 (548)
T 2d1s_A          405 NNPEATKELI--DEEG--WLHTGDIGYYDEEKH  433 (548)
T ss_dssp             TCHHHHHHHB--CTTS--CEEEEEEEEECTTCC
T ss_pred             CChHHhhhcc--cCCc--EEEccCEEEEcCCCe
Confidence            9999999999  5677  999999999999984

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.8e-61  Score=522.26  Aligned_cols=381  Identities=21%  Similarity=0.265  Sum_probs=318.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .|++++|+++++++||++|+++            +++           ++||+||.++++++|++|+++|+++||+|+++
T Consensus         6 ~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~   62 (509)
T 3ivr_A            6 FTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAIL   62 (509)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            7999999999999999999986            443           79999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|++++++++|||+++|++++||+|.++.+++.+++++++++++|++.+..+.+......++.+..++.++....    
T Consensus        63 ~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  138 (509)
T 3ivr_A           63 SQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG----  138 (509)
T ss_dssp             CCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS----
T ss_pred             cCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc----
Confidence            9999999999999999999999999999999999999999999999999888776666666677777777654221    


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                                  .+.++...............++++++|+|||||||.||||+++|+++++.+.+....+ +++++|+++
T Consensus       139 ------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l  205 (509)
T 3ivr_A          139 ------------PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL  205 (509)
T ss_dssp             ------------SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred             ------------ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence                        1112222112222333566789999999999999999999999999999999998888 999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      +.+|++|++++...+.+++.|++.++   .++..+.+.           ++++++|+++++|+++..+++....      
T Consensus       206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~------  268 (509)
T 3ivr_A          206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP------  268 (509)
T ss_dssp             ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG------
T ss_pred             EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc------
Confidence            99999999999887776666666665   344444444           9999999999999999998764200      


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY  477 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y  477 (576)
                                                                 ...++||.++.+|++   ++.+.+.+.+ +++++|.|
T Consensus       269 -------------------------------------------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y  302 (509)
T 3ivr_A          269 -------------------------------------------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATF  302 (509)
T ss_dssp             -------------------------------------------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred             -------------------------------------------cchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence                                                       011489999999998   7788888877 99999999


Q ss_pred             CcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccccc
Q 008134          478 GLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH  557 (576)
Q Consensus       478 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~  557 (576)
                      |+||++++++...... ...++|+|++|++++|+| ++++.   +++|+.|||+|+|++++.|||++|+.|+++|   .+
T Consensus       303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~  374 (509)
T 3ivr_A          303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRP---LPPGEVGEIVLRGPTVFKGYWNNAAATQHAF---RN  374 (509)
T ss_dssp             EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCEETTCHHHHHHHT---GG
T ss_pred             CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCC---CCCCCceEEEEecCCccccccCCHHHhHHHh---hc
Confidence            9999998776554332 234699999999999999 55654   6799999999999999999999999999999   36


Q ss_pred             ccceeeeCCeecccCccC
Q 008134          558 CVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       558 g~~~~~TGDlg~~d~d~e  575 (576)
                      |  ||+|||+|++|+||.
T Consensus       375 g--~~~TGDl~~~~~dG~  390 (509)
T 3ivr_A          375 G--WHHTGDMGRFDADGY  390 (509)
T ss_dssp             G--SEEEEEEEEECTTSC
T ss_pred             C--CcccccEEEECCCce
Confidence            7  999999999999985

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=5.2e-62  Score=533.28  Aligned_cols=381  Identities=20%  Similarity=0.194  Sum_probs=309.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...+++++|+++++++||++|+++            ++           +++||+||.++++++|++|+++|+++||+|
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V  128 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLH------------EA-----------DELTYGALNERANRLAHRLVGLGVAPGTLV  128 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEEC------------CC-----------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            4457999999999999999999986            33           379999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++......+       .....++..+..   
T Consensus       129 ~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~---  198 (570)
T 4gr5_A          129 GVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEA---  198 (570)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC-----
T ss_pred             EEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeeccc---
Confidence            9999999999999999999999999999999999999999999999999997654321       122222211110   


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d  318 (576)
                                           ..............++++++|+|||||||.||||+++|+++.+.+.. ...+ .++++|
T Consensus       199 ---------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d  255 (570)
T 4gr5_A          199 ---------------------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDE  255 (570)
T ss_dssp             --------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTC
T ss_pred             ---------------------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCC
Confidence                                 00011112234567899999999999999999999999999876654 3344 788999


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      ++++.+|++|+.+.+.++.+++.|+++++.+.... +     +..+.+.|+++++|++.++|+++..+.+....      
T Consensus       256 ~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~-~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------  323 (570)
T 4gr5_A          256 VFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNP-D-----PLEIGELVARHGVTMLQLSASLFNFLVDEVPE------  323 (570)
T ss_dssp             EEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSC-C-----HHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------
T ss_pred             EEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccC-C-----HHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------
Confidence            99999999998888888999999999998543211 1     12233449999999999999999988753210      


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY  477 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y  477 (576)
                                                                  ..++||.+++||+++++++.+.+.+.+ +++++|.|
T Consensus       324 --------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~Y  359 (570)
T 4gr5_A          324 --------------------------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGY  359 (570)
T ss_dssp             --------------------------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             --------------------------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEee
Confidence                                                        014899999999999999988887776 89999999


Q ss_pred             CcccccCCccccCCC----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhc
Q 008134          478 GLTETCAGSTFSEWD----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (576)
Q Consensus       478 G~TE~~~~~~~~~~~----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~  553 (576)
                      |+||+++.++.....    .....++|+|++|++++|+| ++++.   +++|++|||+|+|+++++|||++|+.|+++|+
T Consensus       360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~---~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~  435 (570)
T 4gr5_A          360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP---AANGALGELYVAGAGLAHGYVSRPALTAERFV  435 (570)
T ss_dssp             CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred             chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC---CCCCCcEEEEEeecccchhcCCCchhhhcccc
Confidence            999998877654322    22346799999999999999 66655   66999999999999999999999999999996


Q ss_pred             ccc----cccceeeeCCeecccCccC
Q 008134          554 VNF----HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       554 ~~~----~g~~~~~TGDlg~~d~d~e  575 (576)
                      .++    +|.+||||||+|++|+||.
T Consensus       436 ~~~~~~~~~~~w~~TGDlg~~d~dG~  461 (570)
T 4gr5_A          436 ADPFAGPGGERMYRTGDLARRRADGV  461 (570)
T ss_dssp             ECTTCCSSCCEEEEEEEEEEECTTSC
T ss_pred             cCCCCCCCCCEEEeCCCeEEECCCCe
Confidence            553    4557999999999999985

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.1e-61  Score=527.04  Aligned_cols=386  Identities=20%  Similarity=0.217  Sum_probs=315.8

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .+++++|+++++++||++|+++            ++           +++||+||+++++++|++|+++|+++||+|+|+
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~   81 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ   81 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            6999999999999999999986            33           379999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++....     ..+..+...++.++.++..+...
T Consensus        82 ~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (539)
T 1mdb_A           82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE  161 (539)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred             cCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc
Confidence            9999999999999999999999999999999999999999999999987532     23333334455556565544311


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~  316 (576)
                      .                 +.++.... ..+.......++++++|+|||||||.||||+++|+++++.+.+....+ ++++
T Consensus       162 ~-----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~  222 (539)
T 1mdb_A          162 E-----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH  222 (539)
T ss_dssp             T-----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred             c-----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence            0                 11111111 111122445789999999999999999999999999999998888888 8999


Q ss_pred             CcEEEEecChHHHHHHH--HHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          317 SDVYLAYLPLAHVLELA--AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       317 ~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +|++++.+|++|++++.  .++.+|+.|+++++.+   +..+.+.           ++++++|+++++|+++..+++...
T Consensus       223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~  291 (539)
T 1mdb_A          223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS  291 (539)
T ss_dssp             TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence            99999999999999987  4888999999999943   3444444           999999999999999999876432


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ..                                               ....++||.+++||+++++++.++|++.+|+
T Consensus       292 ~~-----------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~  324 (539)
T 1mdb_A          292 SR-----------------------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGC  324 (539)
T ss_dssp             HC-----------------------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred             cc-----------------------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence            10                                               0112589999999999999999999998999


Q ss_pred             ceecccCcccccCCccccCCC-CCCCCccCCCCCCc-EEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          472 PIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCC-YIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~-~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      +++|.||+||+++.++..... ....+++|+|+++. +++|+| ++++.   +++|+.|||+|+|+++++|||++|+.|+
T Consensus       325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~  400 (539)
T 1mdb_A          325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNA  400 (539)
T ss_dssp             EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred             cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCC---CcCCCcceEEeeCcccchhhcCChhhhh
Confidence            999999999975433321111 11236899999765 899999 66654   6799999999999999999999999999


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ++|  ..+|  ||+|||+|++|+||.
T Consensus       401 ~~f--~~~g--~~~TGDlg~~~~dG~  422 (539)
T 1mdb_A          401 ASF--TEDG--FYRTGDIVRLTRDGY  422 (539)
T ss_dssp             HHB--CTTS--CEEEEEEEEECTTSC
T ss_pred             hhc--cCCC--CeecCceEEECCCCc
Confidence            999  4577  999999999999985

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=7.6e-61  Score=523.40  Aligned_cols=398  Identities=15%  Similarity=0.185  Sum_probs=325.7

Q ss_pred             CCCHHHHHHHHHHh-----CCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCC
Q 008134           81 ASTMAALFEQSCKS-----HPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNV  154 (576)
Q Consensus        81 ~~tl~~~~~~~a~~-----~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~  154 (576)
                      .+++.++|++++++     +||++|+++.+           +.       +..+++||+||.++++++|++|+++ |+++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~-----------~~-------g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~   98 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWVN-----------GK-------GKELMWNFRELSENSQQAANVLSGACGLQR   98 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC-----------SS-------SCEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEEc-----------CC-------CceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence            35778999999999     99999998742           11       1235899999999999999999999 9999


Q ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecC
Q 008134          155 DTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFEN  234 (576)
Q Consensus       155 gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~  234 (576)
                      ||+|+|+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+..+.+......++.++.++.++.
T Consensus        99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (570)
T 3c5e_A           99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE  178 (570)
T ss_dssp             TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999888777776666677777776654


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHH--HHHHHHhhCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVA--TAAAIKTLIP  312 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~  312 (576)
                      ...            .....++++....... .......++++++|+|||||||.||||+++|+ ++.  ..... ..+ 
T Consensus       179 ~~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-  242 (570)
T 3c5e_A          179 KSC------------DGWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-  242 (570)
T ss_dssp             SCC------------TTSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-
T ss_pred             cCc------------cccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-
Confidence            211            0124566666543221 22245678999999999999999999999999 554  33333 555 


Q ss_pred             CCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +++++|++++.+|++|+++++. ++.++..|+++++.+... .+     +..+++.|+++++|+++++|+++..+.+...
T Consensus       243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~-~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  316 (570)
T 3c5e_A          243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK-FD-----PLVILKTLSSYPIKSMMGAPIVYRMLLQQDL  316 (570)
T ss_dssp             SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSS-CC-----HHHHHHHHHHSCCCEEEECHHHHHHHHTSCT
T ss_pred             CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCC-CC-----HHHHHHHHHHhCCeEEeccHHHHHHHHhccc
Confidence            8899999999999999999874 788999999999843211 11     1223344999999999999999998865200


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                                                                      .....++||.+++||+++++++.++|.+.+|+
T Consensus       317 ------------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~  348 (570)
T 3c5e_A          317 ------------------------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGL  348 (570)
T ss_dssp             ------------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred             ------------------------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence                                                            00012589999999999999999999998899


Q ss_pred             ceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc-----cCcccccccCCcc
Q 008134          472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-----GFNVTAGYFNNPG  546 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~-----G~~v~~GY~~~~~  546 (576)
                      +++|.||+||+++.++.........+++|+|++|++++|+| ++++.   +++|+.|||+|+     |++++.|||++|+
T Consensus       349 ~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~---~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~  424 (570)
T 3c5e_A          349 DIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNV---LPPGTEGDIGIRVKPIRPIGIFSGYVDNPD  424 (570)
T ss_dssp             CCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCB---CCTTCCEEEEEECSSBCCTTCCCEETTCHH
T ss_pred             chhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCC---CCCCCCCeeEEeccCCCCchhhccccCChh
Confidence            99999999999876655544445568999999999999999 66654   679999999999     9999999999999


Q ss_pred             cchhhhcccccccceeeeCCeecccCccC
Q 008134          547 KTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       547 ~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .|+++|   .+|  ||+|||+|++|+||.
T Consensus       425 ~t~~~f---~~~--~~~TGDlg~~d~dG~  448 (570)
T 3c5e_A          425 KTAANI---RGD--FWLLGDRGIKDEDGY  448 (570)
T ss_dssp             HHHHTE---ETT--EEEEEEEEEECTTSC
T ss_pred             Hhhhhh---cCC--ccccceeEEEcCCce
Confidence            999999   356  999999999999985

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=8.7e-61  Score=516.12  Aligned_cols=381  Identities=19%  Similarity=0.225  Sum_probs=305.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      +.|++++|+++++++||++|+.+..          ++           +++||+||.++++++|++|+++|+++||+|++
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i   59 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3689999999999999999998620          12           47999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEE--CchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLIC--DSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+  +....+.+..   ..+..+ +         
T Consensus        60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~---------  126 (504)
T 1t5h_X           60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSGAR-I---------  126 (504)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCCCE-E---------
T ss_pred             EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccccce-e---------
Confidence            999999999999999999999999999999999999999999999999  6665444311   111111 2         


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCC----CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGK----RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                    +.++++.....    ..........++++++|+|||||||.||||+++|+++.+.+......+ ++
T Consensus       127 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~  191 (504)
T 1t5h_X          127 --------------IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL  191 (504)
T ss_dssp             --------------EEGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred             --------------EEecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence                          22222221110    111112345689999999999999999999999999999988888777 77


Q ss_pred             --CCCcEEEEecChHHHHHHH-HHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          315 --GRSDVYLAYLPLAHVLELA-AESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       315 --~~~d~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                        +++|++++.+|++|++++. .++.++..|+++++.+   +..+.+.           |+++++|+++++|++++.+..
T Consensus       192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~  260 (504)
T 1t5h_X          192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA  260 (504)
T ss_dssp             CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred             CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence              8899999999999999984 4788999999999943   3344444           999999999999999999876


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      .......                                             ....++||.+++||+++++++.++|++.
T Consensus       261 ~~~~~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~  295 (504)
T 1t5h_X          261 AAAHAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQH  295 (504)
T ss_dssp             HHCCTTC---------------------------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred             hhccccc---------------------------------------------cccCccccEEEEcCCcCCHHHHHHHHHh
Confidence            4210000                                             0012489999999999999999999999


Q ss_pred             hCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEc-cCcccccccCCccc
Q 008134          469 MGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVG-GFNVTAGYFNNPGK  547 (576)
Q Consensus       469 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~-G~~v~~GY~~~~~~  547 (576)
                      ++++++|.||+||++. +....  ....+++|+|.++++++|+| +++.....+++|+.|||+|+ |++++.||+++|+.
T Consensus       296 ~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~  371 (504)
T 1t5h_X          296 LPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA  371 (504)
T ss_dssp             CCSEEEEEEEETTTEE-EEEEE--SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred             cCcceeeeeccccccc-ccccc--CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence            9999999999999832 22221  34457999999999999999 44432234789999999999 99999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++|   .+|  ||+|||+|++|+||.
T Consensus       372 t~~~f---~~g--~~~TGDlg~~~~dG~  394 (504)
T 1t5h_X          372 TAEKL---QDG--WYRTSDVAVWTPEGT  394 (504)
T ss_dssp             HHHHE---ETT--EEEEEEEEEECTTSC
T ss_pred             hhhhh---cCC--ccccCcEEEECCCce
Confidence            99999   577  999999999999985

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=9.9e-61  Score=527.85  Aligned_cols=396  Identities=16%  Similarity=0.196  Sum_probs=321.6

Q ss_pred             cCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCC
Q 008134           77 PWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDT  156 (576)
Q Consensus        77 ~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd  156 (576)
                      .++...+++++|+++++  ||++|+++            ++           +++||+||+++++++|++|+++|+++||
T Consensus        22 ~~~~~~~l~~~~~~~a~--pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd   76 (617)
T 3rg2_A           22 GYWQDLPLTDILTRHAA--SDSIAVID------------GE-----------RQLSYRELNQAADNLACSLRRQGIKPGE   76 (617)
T ss_dssp             TSCCCCCTTHHHHTTTT--CCSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             CCCCcCCHHHHHHHhhC--CCCeEEec------------CC-----------ceEeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            34555899999999988  99999986            33           3799999999999999999999999999


Q ss_pred             EEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh-----hHHHHhhhcCCCccEEEE
Q 008134          157 RAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL-----KKLSAVSSSLKTIKNVIY  231 (576)
Q Consensus       157 ~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~l~~~~~~~~~~~~vv~  231 (576)
                      +|+++++|++++++++|||+++|+++||++|.++.+++.++++++++++++++....     ..+.......+....+..
T Consensus        77 ~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (617)
T 3rg2_A           77 TALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQL  156 (617)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeee
Confidence            999999999999999999999999999999999999999999999999999987654     333333444455555555


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI  311 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  311 (576)
                      .+....               ..+.+....... .....+..++++|||+|||||||.||||+++|+++++.+.+....+
T Consensus       157 ~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~  220 (617)
T 3rg2_A          157 LNDSGE---------------HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC  220 (617)
T ss_dssp             ETCCST---------------TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             cccccc---------------cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc
Confidence            443221               123333332222 2223456789999999999999999999999999999999998888


Q ss_pred             CCCCCCcEEEEecChHHHHHHH--HHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          312 PNPGRSDVYLAYLPLAHVLELA--AESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       312 ~~~~~~d~~l~~~pl~~~~~~~--~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                       ++.++|++++++|++|.+++.  .++.+++.|+++++.+....        ..+...++++++|++.++|+++..+.+.
T Consensus       221 -~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~--------~~~~~~i~~~~~t~~~~~P~~~~~l~~~  291 (617)
T 3rg2_A          221 -QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSA--------TLCFPLIEKHQVNVTALVPPAVSLWLQA  291 (617)
T ss_dssp             -TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCH--------HHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred             -CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCH--------HHHHHHHHHhCCcEEEcchHHHHHHHHh
Confidence             999999999999999988876  48899999999999443211        1123349999999999999999998765


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      ......                                             ....++||.+++|||++++++.++|...+
T Consensus       292 ~~~~~~---------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~  326 (617)
T 3rg2_A          292 LIEGES---------------------------------------------RAQLASLKLLQVGGARLSATLAARIPAEI  326 (617)
T ss_dssp             HHTTCC---------------------------------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred             hhcccc---------------------------------------------cccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence            322100                                             00114899999999999999999999999


Q ss_pred             CCceecccCcccccCCccccCCCC-CCCCccCCCC-CCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCccc
Q 008134          470 GAPIGQAYGLTETCAGSTFSEWDD-PSVGRVGPPV-PCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGK  547 (576)
Q Consensus       470 ~~~l~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~  547 (576)
                      +++++|.||+||+++.++...... ....++|+|+ ++++++|+| ++++.   +|+|++|||+|+|+++++||||+|+.
T Consensus       327 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~---~p~G~~GEl~i~G~~v~~GY~~~p~~  402 (617)
T 3rg2_A          327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNP---LPQGEVGRLMTRGPYTFRGYYKSPQH  402 (617)
T ss_dssp             CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCB---CCTTCCEEEEEECSSSCSCCTTCHHH
T ss_pred             CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCC---CCCCCceEEEecCccccchhcCChhh
Confidence            999999999999986554332211 1125899997 788999999 66654   67999999999999999999999999


Q ss_pred             chhhhcccccccceeeeCCeecccCccC
Q 008134          548 TSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       548 t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++|  .++|  ||||||+|++|+||.
T Consensus       403 t~~~f--~~~~--~yrTGDl~~~~~dG~  426 (617)
T 3rg2_A          403 NASAF--DANG--FYCSGDLISIDPEGY  426 (617)
T ss_dssp             HHHHB--CTTS--CEEEEEEEEECTTSC
T ss_pred             hhhcc--CCCC--ceecCceEEEcCCce
Confidence            99999  5566  999999999999985

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.9e-60  Score=528.15  Aligned_cols=413  Identities=17%  Similarity=0.191  Sum_probs=328.1

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      ++++++|+++++++||++|+++..          + .      .+..+++||+||.++++++|++|+++|+++||+|+|+
T Consensus        76 n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~  138 (652)
T 1pg4_A           76 NLAANCLDRHLQENGDRTAIIWEG----------D-D------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY  138 (652)
T ss_dssp             CHHHHHTGGGHHHHTTSEEEEEEC----------S-S------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             hHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            578999999999999999999742          1 0      1233689999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhhhcCC--CccEEE
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLK--TIKNVI  230 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~~~~vv  230 (576)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.+.....+  .+..++
T Consensus       139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi  218 (652)
T 1pg4_A          139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI  218 (652)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred             eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence            9999999999999999999999999999999999999999999999987642         23344333332  456677


Q ss_pred             EecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHh
Q 008134          231 YFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKT  309 (576)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~  309 (576)
                      +++......     ... ......|+++...... ........+++++||+|||||||+||||+++|++++..+. ....
T Consensus       219 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~  291 (652)
T 1pg4_A          219 VLKRTGSDI-----DWQ-EGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY  291 (652)
T ss_dssp             EECSSCCCC-----CCC-BTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH
T ss_pred             EEeCCCCcc-----ccc-CCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH
Confidence            765432110     000 1123567777654322 1223455689999999999999999999999999887664 4455


Q ss_pred             hCCCCCCCcEEEEecChHHHHHH-HHHHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHHHHH
Q 008134          310 LIPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVR  387 (576)
Q Consensus       310 ~~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~  387 (576)
                      .+ +++++|++++++|++|+.+. +.++.+|+.|+++++.+... ..+     +..+++.|+++++|+++++|++++.|.
T Consensus       292 ~~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~~~~l~  365 (652)
T 1pg4_A          292 VF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT-----PARMCQVVDKHQVNILYTAPTAIRALM  365 (652)
T ss_dssp             HT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS-----TTHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred             hc-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCC-----HHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence            67 89999999999999999998 55889999999999954321 112     233455599999999999999999886


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHh
Q 008134          388 EGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINI  467 (576)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~  467 (576)
                      +.....                                             .++...++||.+++|||++++++.+++.+
T Consensus       366 ~~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~  400 (652)
T 1pg4_A          366 AEGDKA---------------------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWK  400 (652)
T ss_dssp             TTGGGG---------------------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             hcCccc---------------------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHH
Confidence            532100                                             00112258999999999999999999998


Q ss_pred             hhC---CceecccCcccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--Cccccc
Q 008134          468 CMG---APIGQAYGLTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAG  540 (576)
Q Consensus       468 ~~~---~~l~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~G  540 (576)
                      .+|   ++++|.||+||+++.++...+.  ....+++|+|++|++++|+| ++++.   ++.|+.|||+|+|  |++++|
T Consensus       401 ~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~---v~~g~~GEl~i~g~~p~~~~g  476 (652)
T 1pg4_A          401 KIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQART  476 (652)
T ss_dssp             HTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCE
T ss_pred             HhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC---cCCCceEEEEEccCCCchhhh
Confidence            888   8999999999998776655432  23558999999999999999 66665   5689999999999  799999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ||++|+.+.+.|....+|  ||+|||+|++|+||.
T Consensus       477 Y~~~~e~~~~~~~~~~~g--~y~TGDlg~~d~dG~  509 (652)
T 1pg4_A          477 LFGDHERFEQTYFSTFKN--MYFSGDGARRDEDGY  509 (652)
T ss_dssp             ETTCHHHHHHHHHSSSTT--SEEEEEEEEECTTSC
T ss_pred             hcCCHHHHHhhhhhcCCC--EEECCcEEEEcCCCc
Confidence            999999999888544567  999999999999984

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.1e-60  Score=554.11  Aligned_cols=449  Identities=21%  Similarity=0.245  Sum_probs=332.4

Q ss_pred             CCcccccccccCCCcccchhhheeeccceeeehhhhhccccccccCCCCCCCCCCccccccCCCCccccccCCCCCCHHH
Q 008134            7 SSFDSELLTEKGSGIYGIVGAAIVALLIPVLLSMMVARKKKVKQRGVPVEVGGEPGYAIRNAQIPELVEVPWKGASTMAA   86 (576)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~   86 (576)
                      +.|+.++.++..+.+|......+.+.+.    ..  +..              +.........   .+..++|...|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~--------------~~~~~~~~~~---~~~~~~p~~~tl~~   65 (979)
T 3tsy_A            9 HHSSGLVPRGSHMARMAPQEQAVSQVME----KQ--SNN--------------NNSDVIFRSK---LPDIYIPNHLSLHD   65 (979)
T ss_dssp             --------------------------------------------------------CCCBCCS---SCCCCCCTTSCHHH
T ss_pred             ccccCcccCcchhhhhhhHHHHHHHhhh----hc--ccC--------------CCCCceeecC---CCCCCCCCCCCHHH
Confidence            4567777777777776665555554221    11  111              1111112222   34455677789999


Q ss_pred             HHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCcH
Q 008134           87 LFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCV  166 (576)
Q Consensus        87 ~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s~  166 (576)
                      +|+++++++||++|+++.+          +|           +++||+||.++++++|++|+++|+++||+|+|+++|++
T Consensus        66 ~l~~~a~~~pd~~Al~~~~----------~~-----------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~  124 (979)
T 3tsy_A           66 YIFQNISEFATKPCLINGP----------TG-----------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP  124 (979)
T ss_dssp             HHTTTGGGTTTSEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH
T ss_pred             HHHHHHHhCCCCeEEEECC----------CC-----------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH
Confidence            9999999999999998631          23           37999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCCCCCC
Q 008134          167 EWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGG  246 (576)
Q Consensus       167 ~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~  246 (576)
                      ++++++|||+++|+++||++|.++.+++.+++++++++++|++....+.+.......  ...++.++......       
T Consensus       125 e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------  195 (979)
T 3tsy_A          125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESVP-------  195 (979)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--CCEEEECCCCTTSC-------
T ss_pred             HHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--CceEEEeCCccccc-------
Confidence            999999999999999999999999999999999999999999998877666554332  22345544321111       


Q ss_pred             CCCceEeehHHHHHcCCC--CCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh----hCCCCCCCcEE
Q 008134          247 ISNWTVSSFSEVEKLGKR--SPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT----LIPNPGRSDVY  320 (576)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~~d~~  320 (576)
                       .......+.++......  ...+.....+++++||+|||||||.||||+++|+++++.+.....    .+ .+.++|++
T Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~d~~  273 (979)
T 3tsy_A          196 -IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVI  273 (979)
T ss_dssp             -CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS-CCCSSCEE
T ss_pred             -CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc-cCCCCCEE
Confidence             11224556555433221  112234567899999999999999999999999999998877654    23 67889999


Q ss_pred             EEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          321 LAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       321 l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      ++.+|++|++++.. ++.+|..|+++++.+   +..+.+.           ++++++|++.++|+++..+.+.....   
T Consensus       274 l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~---  339 (979)
T 3tsy_A          274 LCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAKSSETE---  339 (979)
T ss_dssp             EECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHCGGGG---
T ss_pred             EEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHhCcccc---
Confidence            99999999999965 678899999999943   3334444           99999999999999999887632110   


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceec
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ  475 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~  475 (576)
                                                                  ....++||.+++||+++++++.++|++.+ +++++|
T Consensus       340 --------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~  375 (979)
T 3tsy_A          340 --------------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ  375 (979)
T ss_dssp             --------------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred             --------------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence                                                        01125899999999999999999999888 899999


Q ss_pred             ccCcccccCCcccc-----CCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134          476 AYGLTETCAGSTFS-----EWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (576)
Q Consensus       476 ~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~  550 (576)
                      .||+||++++++..     .......+++|+|++|++++|+|++++..   +++|++|||+|+|+++++|||++|+.|++
T Consensus       376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~i~g~~v~~GY~~~p~~t~~  452 (979)
T 3tsy_A          376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS---LSRNQPGEICIRGHQIMKGYLNNPAATAE  452 (979)
T ss_dssp             CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB---CCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred             eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC---CCCCCccEEEEECCCccccccCChhhhhh
Confidence            99999998775543     12233558999999999999999776765   56999999999999999999999999999


Q ss_pred             hhcccccccceeeeCCeecccCccC
Q 008134          551 VYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       551 ~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  +.+|  ||||||+|++|+||.
T Consensus       453 ~f--~~~g--~~~TGDl~~~~~dG~  473 (979)
T 3tsy_A          453 TI--DKDG--WLHTGDIGLIDDDDE  473 (979)
T ss_dssp             HB--CTTS--CEEEEEEEEECTTSC
T ss_pred             hc--cCCC--cEEcCCEEEEcCCce
Confidence            99  5677  999999999999985

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=4e-60  Score=525.88  Aligned_cols=415  Identities=14%  Similarity=0.131  Sum_probs=329.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i  160 (576)
                      ++++++|+++++++||++|+++..          + .      .+..+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus        82 n~~~~~l~~~a~~~pd~~Al~~~~----------~-~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i  144 (663)
T 1ry2_A           82 NACYNCVDRHALKTPNKKAIIFEG----------D-E------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV  144 (663)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEEC----------S-S------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred             cHHHHHHHHHhccCCCceEEEEEc----------C-C------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            689999999999999999999742          1 0      123468999999999999999999 999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhhhcCCCccEEEE
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVSSSLKTIKNVIY  231 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~~~~~~~~~vv~  231 (576)
                      +++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.+....++.++.+++
T Consensus       145 ~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~  224 (663)
T 1ry2_A          145 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV  224 (663)
T ss_dssp             CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred             EcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEE
Confidence            99999999999999999999999999999999999999999999999987643         234455555566777777


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHhh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKTL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~  310 (576)
                      ++........    . .......|.++..... ...+.....+++++||+|||||||+||||+++|++++..+. .....
T Consensus       225 ~~~~~~~~~~----~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~  298 (663)
T 1ry2_A          225 YRKTNNPSVA----F-HAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT  298 (663)
T ss_dssp             ECSSCCSSCC----C-CSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred             EecCCCCccc----c-CCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence            7643210000    0 0112356777765322 22223456789999999999999999999999999887664 34456


Q ss_pred             CCCCCCCcEEEEecChHHHHHH-HHHHHHHHhCceEEECCccc-ccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLEL-AAESIMLCAGCAIGYGSTLT-MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      + ++.++|++++.+|++|+.+. +.++.+|+.|+++++.+... ..+     +..+++.|+++++|+++++|++++.|.+
T Consensus       299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~Ps~~~~l~~  372 (663)
T 1ry2_A          299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN-----YSRYWDIIDEHKVTQFYVAPTALRLLKR  372 (663)
T ss_dssp             S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC-----TTHHHHHHHHTTCSEEEECHHHHHHHTT
T ss_pred             c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCC-----HHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence            7 89999999999999999998 45789999999999954321 112     2334555999999999999999998764


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      .....                                             .++...++||.+++|||++++++.+++.+.
T Consensus       373 ~~~~~---------------------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~  407 (663)
T 1ry2_A          373 AGDSY---------------------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEK  407 (663)
T ss_dssp             SCTTS---------------------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred             cCccc---------------------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence            21100                                             000112589999999999999999999998


Q ss_pred             hC---CceecccCcccccCCccccCC---CCCCCCccCCCCCCcEEEEeecCCCCCcCCCCC-CCCceEEEcc--Ccccc
Q 008134          469 MG---APIGQAYGLTETCAGSTFSEW---DDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKP-MPRGEIVVGG--FNVTA  539 (576)
Q Consensus       469 ~~---~~l~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~-g~~GEl~v~G--~~v~~  539 (576)
                      +|   ++++|.||+||+++.++...+   ...+.+++|+|++|++++|+|+++++.+   +. |+.|||+|+|  |++++
T Consensus       408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v---~~~g~~Gel~i~g~~p~~~~  484 (663)
T 1ry2_A          408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL---NTSHAEGVLAVKAAWPSFAR  484 (663)
T ss_dssp             TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCE---ECSSCEEEEEESSCCTTSCC
T ss_pred             hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcC---CCCCcceEEEEecCCCchhc
Confidence            87   899999999999877665443   2345689999999999999995477654   35 8899999999  58999


Q ss_pred             cccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          540 GYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       540 GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |||++|+.|.+.|....+|  ||+|||+|++|+||.
T Consensus       485 gy~~~~~~~~~~~~~~~~g--~y~TGDlg~~d~dG~  518 (663)
T 1ry2_A          485 TIWKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGY  518 (663)
T ss_dssp             EETTCHHHHHHHHTSSSTT--SEEEEEEEEECTTCC
T ss_pred             ccccChHHHHHhhhcCCCC--EEEcCCEEEEcCCCC
Confidence            9999999999998554577  999999999999984

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.5e-60  Score=515.73  Aligned_cols=392  Identities=20%  Similarity=0.214  Sum_probs=313.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      .+++.++|+++++ +||++|+++            +++           ++||+||.++++++|++|+++|+++||+|++
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   78 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL   78 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            3569999999999 999999985            333           7999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCc-cEEEEecCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTI-KNVIYFENDGSEK  239 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~-~~vv~~~~~~~~~  239 (576)
                      +++|++++++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.. ..++.++..... 
T Consensus        79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (529)
T 2v7b_A           79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE-  157 (529)
T ss_dssp             ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred             EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence            999999999999999999999999999999999999999999999999998777666654444444 445554432110 


Q ss_pred             CCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHH-HHHHHHHHhhCCCCCCCc
Q 008134          240 DSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNI-VATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~~d  318 (576)
                               ......++++..... .........++++++|+|||||||.||||+++|+++ .+........+ ++.++|
T Consensus       158 ---------~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d  226 (529)
T 2v7b_A          158 ---------PRLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAEND  226 (529)
T ss_dssp             -----------CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTC
T ss_pred             ---------cccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCc
Confidence                     011234666654322 122234567899999999999999999999999999 55554444455 788999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCceEEEC----CcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYG----STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  393 (576)
                      ++++.+|++|++++.. ++.++..|+++++.    ++..+.+           .+.++++|+++++|+++..++..... 
T Consensus       227 ~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------~i~~~~~t~~~~~P~~~~~l~~~~~~-  294 (529)
T 2v7b_A          227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFA-----------RLVEHRPTVFYGVPTLYANMLVSPNL-  294 (529)
T ss_dssp             EEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHH-----------HHHHSCCSEEEECHHHHHHHHTCTTC-
T ss_pred             EEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHH-----------HHHHhCCEEEEecHHHHHHHHhCccc-
Confidence            9999999999999876 66789999999985    3333333           39999999999999999887642100 


Q ss_pred             HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCce
Q 008134          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPI  473 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l  473 (576)
                          ..                                          ....+||.+++||+++++++.++|++.+|+++
T Consensus       295 ----~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i  328 (529)
T 2v7b_A          295 ----PA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEI  328 (529)
T ss_dssp             ----CC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred             ----cc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCce
Confidence                00                                          00037999999999999999999999999999


Q ss_pred             ecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhc
Q 008134          474 GQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYK  553 (576)
Q Consensus       474 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~  553 (576)
                      +|.||+||++.+++.........+++|+|++|++++|+| ++++.   +++|+.|||+|+|++++.|||++|+.|+++| 
T Consensus       329 ~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-  403 (529)
T 2v7b_A          329 LDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHA---VPDGEVGDLYIKGPSAAVMYWNNREKSRATF-  403 (529)
T ss_dssp             EEEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCB---CCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-
T ss_pred             eeeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCC---CCCCCccEEEEecCCcccccCCChHHHHHhh-
Confidence            999999999776655544445668999999999999999 66665   6699999999999999999999999999999 


Q ss_pred             ccccccceeeeCCeecccCccC
Q 008134          554 VNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       554 ~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                        .+|  ||+|||+|++|+||.
T Consensus       404 --~~~--~~~TGDl~~~~~~G~  421 (529)
T 2v7b_A          404 --LGE--WIRSGDKYCRLPNGC  421 (529)
T ss_dssp             --ETT--EEEEEEEEEECTTSC
T ss_pred             --hcC--CcccCceEEECCCcc
Confidence              366  999999999999974

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=5.3e-60  Score=510.87  Aligned_cols=382  Identities=17%  Similarity=0.166  Sum_probs=316.5

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEE
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNF-GHNVDTRAAIL  161 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~V~i~  161 (576)
                      ++.++|+++|+++||++|+++            +++           ++||+||.++++++|++|++. |.++|++|+++
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~   58 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVY   58 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred             cHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence            789999999999999999986            433           799999999999999999985 88899999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDS  241 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~  241 (576)
                      ++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......      .                   
T Consensus        59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~-------------------  113 (511)
T 3e7w_A           59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------A-------------------  113 (511)
T ss_dssp             ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------C-------------------
T ss_pred             ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------h-------------------
Confidence            999999999999999999999999999999999999999999999997643210      0                   


Q ss_pred             CCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          242 GVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                          ........+++++...............++++++|+|||||||.||||+++|+++.+.+.+....+ ++.++|+++
T Consensus       114 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l  188 (511)
T 3e7w_A          114 ----VGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFL  188 (511)
T ss_dssp             ----CCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEE
T ss_pred             ----cccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEE
Confidence                001234566666665443333333456789999999999999999999999999999999998888 999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchh
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLT  401 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~  401 (576)
                      +.+|++|+.+++.++.++..|+++++.+.....+.     ..+++.++++++|++.++|+++..++.....         
T Consensus       189 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------  254 (511)
T 3e7w_A          189 NQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKP-----KVLFEELKKSGLNVWTSTPSFVQMCLMDPGF---------  254 (511)
T ss_dssp             ECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------
T ss_pred             EeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------
Confidence            99999999999889999999999999544322221     2233349999999999999999987652110         


Q ss_pred             HHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceecccCcc
Q 008134          402 KNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAYGLT  480 (576)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~T  480 (576)
                                                            .+...+++|.+++||+++++++.+++.+.+ +++++|.||+|
T Consensus       255 --------------------------------------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T  296 (511)
T 3e7w_A          255 --------------------------------------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPT  296 (511)
T ss_dssp             --------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCG
T ss_pred             --------------------------------------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccc
Confidence                                                  001125899999999999999999999988 89999999999


Q ss_pred             cccCCccccCCC-----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhccc
Q 008134          481 ETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN  555 (576)
Q Consensus       481 E~~~~~~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~  555 (576)
                      |+++.++.....     .....++|+|++|++++|+| ++++.   +++|+.|||+|+|+++++|||++|+.|+++|+. 
T Consensus       297 E~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~-  371 (511)
T 3e7w_A          297 EATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQP---LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFS-  371 (511)
T ss_dssp             GGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCB---CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEE-
T ss_pred             hheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCC---CCCCCceEEEEecCccChhhCCCcccchhhhcC-
Confidence            998876643321     23446899999999999999 66654   679999999999999999999999999999943 


Q ss_pred             ccccceeeeCCeecccCccC
Q 008134          556 FHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       556 ~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .+|.+||+|||+|+++ ||.
T Consensus       372 ~~g~~~~~TGDlg~~~-dG~  390 (511)
T 3e7w_A          372 HEGQWAYRTGDAGFIQ-DGQ  390 (511)
T ss_dssp             SSSSEEEEEEEEEEEE-TTE
T ss_pred             CCCCEEEeCCCeEEcc-CCe
Confidence            3566789999999994 663

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=5.2e-60  Score=512.40  Aligned_cols=383  Identities=18%  Similarity=0.176  Sum_probs=311.4

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ..++.++|+++++++||++|+.+            .++           ++||+||.++++++|++|+++|+++||+|++
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i   59 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV   59 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence            36899999999999999999986            443           7999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|++++++++|||+++|+++||++|.++.+++.+++++++++++|++.+....+.                       
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-----------------------  116 (521)
T 3l8c_A           60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-----------------------  116 (521)
T ss_dssp             EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------------------
T ss_pred             EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------------------
Confidence            999999999999999999999999999999999999999999999999876432110                       


Q ss_pred             CCCCCCCCCceEeehHHHHHcC--CCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhh--CCCCCC
Q 008134          241 SGVSGGISNWTVSSFSEVEKLG--KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTL--IPNPGR  316 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~  316 (576)
                              ......+.++....  ...........++++++|+|||||||.||||+++|+++++.+.+....  + .+..
T Consensus       117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~  187 (521)
T 3l8c_A          117 --------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPK  187 (521)
T ss_dssp             --------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCS
T ss_pred             --------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCC
Confidence                    22334444443221  111222345678999999999999999999999999999988777665  5 7889


Q ss_pred             CcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHh
Q 008134          317 SDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEE  396 (576)
Q Consensus       317 ~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~  396 (576)
                      ++++++..|++|+.++..++.++..|+++++.+.....+.     ..++..+.++++|++.++|+++..+......    
T Consensus       188 ~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----  258 (521)
T 3l8c_A          188 QPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADF-----KQLFTTIAQLPVGIWTSTPSFADMAMLSDDF----  258 (521)
T ss_dssp             SCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCH-----HHHHHHHHHSCCSEEEECHHHHHHHHTSTTC----
T ss_pred             CCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCH-----HHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc----
Confidence            9999999999999999888999999999998544322222     2233449999999999999999877542110    


Q ss_pred             cCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceec
Q 008134          397 KGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQ  475 (576)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~  475 (576)
                                                                 .....++||.+++||+++++++.+++.+.+ +++++|
T Consensus       259 -------------------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~  295 (521)
T 3l8c_A          259 -------------------------------------------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN  295 (521)
T ss_dssp             -------------------------------------------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred             -------------------------------------------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe
Confidence                                                       001125899999999999999999998887 899999


Q ss_pred             ccCcccccCCccccCCC-----CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134          476 AYGLTETCAGSTFSEWD-----DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (576)
Q Consensus       476 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~  550 (576)
                      .||+||+++.++.....     .....++|+|++|++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|++
T Consensus       296 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  371 (521)
T 3l8c_A          296 AYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKE---LSSGEQGEIIVTGPAVSKGYLNNPEKTAE  371 (521)
T ss_dssp             EECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCB---CCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred             CcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCC---CCCCCceEEEecccccChhhcCCchHhhc
Confidence            99999998876644322     12446899999999999999 66665   56999999999999999999999999999


Q ss_pred             hhcccccccceeeeCCeecccCccC
Q 008134          551 VYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       551 ~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|.. .+|.+||+|||+|++|+||.
T Consensus       372 ~f~~-~~~~~~~~TGDlg~~d~dG~  395 (521)
T 3l8c_A          372 AFFT-FKGQPAYHTGDIGSLTEDNI  395 (521)
T ss_dssp             HEEE-ETTEEEEEEEEEEEECSSSC
T ss_pred             cCcC-CCCceeeeCCCEEEEeCCCe
Confidence            9943 24455999999999999984

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=2.5e-60  Score=513.65  Aligned_cols=380  Identities=17%  Similarity=0.159  Sum_probs=307.9

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      ++.++|+++++++||++|+++            .+           +++||+||.++++++|++|+++|+++||+|++++
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~   58 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVW------------RD-----------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYG   58 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred             cHHHHHHHHHHHCCCceEEEe------------CC-----------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence            789999999999999999987            33           3799999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|++++++++|||+++|+++||++|.++.+++.+++++++++++|++......         ..                
T Consensus        59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~---------~~----------------  113 (512)
T 3fce_A           59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT---------DL----------------  113 (512)
T ss_dssp             SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS---------CC----------------
T ss_pred             CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc---------cc----------------
Confidence            99999999999999999999999999999999999999999999997543210         00                


Q ss_pred             CCCCCCCceEee---hHHHHHcCC-CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134          243 VSGGISNWTVSS---FSEVEKLGK-RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       243 ~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d  318 (576)
                            ......   +.++..... ..+.+.....++++++|+|||||||.||||+++|+++++.+.+....+ ++.++|
T Consensus       114 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d  186 (512)
T 3fce_A          114 ------PVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQ  186 (512)
T ss_dssp             ------SSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSC
T ss_pred             ------ccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCC
Confidence                  011122   222222111 112223456789999999999999999999999999999999998888 999999


Q ss_pred             EEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          319 VYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      ++++.+|++|+.+++.++.+++.|+++++.+.....+.     ..++..++++++|++.++|+++..++.....      
T Consensus       187 ~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~-----~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------  255 (512)
T 3fce_A          187 VFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARP-----KDLFASLEQSDIQVWTSTPSFAEMCLMEASF------  255 (512)
T ss_dssp             EEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSH-----HHHHHHHHHHCCCEEEECHHHHHHHTTSTTC------
T ss_pred             EEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCH-----HHHHHHHHHcCCcEEEecHHHHHHHHhhccc------
Confidence            99999999999999889999999999999554322222     2233349999999999999999887542110      


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh-CCceeccc
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM-GAPIGQAY  477 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~-~~~l~~~Y  477 (576)
                                                               .+...++||.+++||+++++++.++|.+.+ +++++|.|
T Consensus       256 -----------------------------------------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y  294 (512)
T 3fce_A          256 -----------------------------------------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTY  294 (512)
T ss_dssp             -----------------------------------------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred             -----------------------------------------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCc
Confidence                                                     011125899999999999999999999888 89999999


Q ss_pred             CcccccCCccccCCCC-----CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhh
Q 008134          478 GLTETCAGSTFSEWDD-----PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVY  552 (576)
Q Consensus       478 G~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f  552 (576)
                      |+||+++.++......     ....++|+|+++++++|+| +++..   +++|+.|||+|+|++++.|||++|+.|+++|
T Consensus       295 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~---~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  370 (512)
T 3fce_A          295 GPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTI---APDGEKGEIVIVGPSVSVGYLGSPELTEKAF  370 (512)
T ss_dssp             CCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCB---CCTTSCEEEEEESTTSCSCBTTCHHHHHHHE
T ss_pred             ccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCC---CCCCCeEEEEEeccccChhhcCCchhhhhcc
Confidence            9999988776543321     2457899999999999999 67665   5689999999999999999999999999999


Q ss_pred             cccccccceeeeCCeecccCccC
Q 008134          553 KVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       553 ~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      . ..+|++||+|||+|++ +||.
T Consensus       371 ~-~~~~~~~~~TGDlg~~-~dG~  391 (512)
T 3fce_A          371 T-MIDGERAYKTGDAGYV-ENGL  391 (512)
T ss_dssp             E-EETTEEEEEEEEEEEE-ETTE
T ss_pred             c-cCCCCEEEeCCceEEe-cCCE
Confidence            3 2355569999999999 6763

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.2e-59  Score=517.36  Aligned_cols=401  Identities=18%  Similarity=0.188  Sum_probs=313.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           79 KGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        79 ~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      +...|+.++|+++++++||++|+++.+           +        +..+++||+||.++++++|++|+++|+++||+|
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V   68 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV   68 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            334799999999999999999998752           1        122589999999999999999999999999999


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCC---CHHHHHHHHhccCceEEEECchhhhHHHHhh-hcCCCccEEEEecC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSL---GEDALIHSLNETQVTTLICDSKQLKKLSAVS-SSLKTIKNVIYFEN  234 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~-~~~~~~~~vv~~~~  234 (576)
                      +++++|++++++++|||+++|+++||++|.+   +.+++.++++++++++++++.+....+.... ...+....      
T Consensus        69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------  142 (590)
T 3kxw_A           69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------  142 (590)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred             EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence            9999999999999999999999999999988   4578999999999999999988765543322 11111111      


Q ss_pred             CCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCC
Q 008134          235 DGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP  314 (576)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~  314 (576)
                                     +.....+++.... .....+....++++++|+|||||||.||||+++|+++++.+.+....+ ++
T Consensus       143 ---------------~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~  205 (590)
T 3kxw_A          143 ---------------IPAIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HM  205 (590)
T ss_dssp             ---------------EEEEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TC
T ss_pred             ---------------cceeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CC
Confidence                           1122222221111 112223456789999999999999999999999999999999998888 99


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHH
Q 008134          315 GRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKK  393 (576)
Q Consensus       315 ~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~  393 (576)
                      .++|++++++|++|++++.. ++.+++.|+++++.++..+...    +..+++.|+++++|++.++|+++..+.+.....
T Consensus       206 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  281 (590)
T 3kxw_A          206 NDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQN----PLSWLKHITKYKATISGSPNFAYDYCVKRIREE  281 (590)
T ss_dssp             CTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHC----THHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred             CCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHC----HHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence            99999999999999999987 7889999999999543322111    122333499999999999999999887642110


Q ss_pred             HHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC---
Q 008134          394 VEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---  470 (576)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~---  470 (576)
                      ..                                            .....++||.+++||+++++++.++|.+.++   
T Consensus       282 ~~--------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g  317 (590)
T 3kxw_A          282 KK--------------------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFG  317 (590)
T ss_dssp             GG--------------------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGT
T ss_pred             hc--------------------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence            00                                            0111258999999999999999999988873   


Q ss_pred             ---CceecccCcccccCCccccCCC---------------------------CCCCCccCCCCCCcEEEEeecCCCCCcC
Q 008134          471 ---APIGQAYGLTETCAGSTFSEWD---------------------------DPSVGRVGPPVPCCYIKLVSWDEGGYKT  520 (576)
Q Consensus       471 ---~~l~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~~~~ivd~~~~~~~~  520 (576)
                         ++++|.||+||+++.++...+.                           .....++|+|+++  ++|+|++++..  
T Consensus       318 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~--  393 (590)
T 3kxw_A          318 FRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIP--  393 (590)
T ss_dssp             CCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCB--
T ss_pred             CCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcC--
Confidence               4799999999999877654321                           1123689999998  88999655554  


Q ss_pred             CCCCCCCceEEEccCcccccccCCcccchhhhcccc----cccceeeeCCeecccCccC
Q 008134          521 SDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF----HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       521 ~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~----~g~~~~~TGDlg~~d~d~e  575 (576)
                       +++|++|||+|+|+++++|||++|+.|+++|..++    +|.+||+|||+|++| ||.
T Consensus       394 -~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~  450 (590)
T 3kxw_A          394 -CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE  450 (590)
T ss_dssp             -CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred             -CCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence             67999999999999999999999999999995321    356699999999999 763

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.9e-58  Score=504.59  Aligned_cols=396  Identities=20%  Similarity=0.184  Sum_probs=307.3

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 008134           78 WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTR  157 (576)
Q Consensus        78 ~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~  157 (576)
                      +....++.++|+++++++||++|+++.+-..       +..      ....+++||+||+++++++|++|++.|+ +||+
T Consensus        16 ~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~-------~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~   81 (562)
T 3ite_A           16 YTSTVPPSHYIETWAKTHPEWKAVEVATGFL-------GSQ------KIVTEDWTYKKLNETANQVANLIIHASL-HGRA   81 (562)
T ss_dssp             --CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCE
T ss_pred             ecccCCHHHHHHHHHHHCCCchhhhcccccc-------ccc------ccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCE
Confidence            3444789999999999999999998742000       000      1223689999999999999999999999 7999


Q ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCC
Q 008134          158 AAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGS  237 (576)
Q Consensus       158 V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~  237 (576)
                      |+++++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++......+     ..+....++..+    
T Consensus        82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~----  152 (562)
T 3ite_A           82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK----  152 (562)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT----
T ss_pred             EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc----
Confidence            99999999999999999999999999999999999999999999999999987654321     011111111100    


Q ss_pred             CCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC------
Q 008134          238 EKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI------  311 (576)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~------  311 (576)
                                    ...+.+........ .......++++++|+|||||||.||||+++|+++.+.+......+      
T Consensus       153 --------------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~  217 (562)
T 3ite_A          153 --------------NQSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPK  217 (562)
T ss_dssp             --------------CHHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGG
T ss_pred             --------------chhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccch
Confidence                          01122222222111 122345678899999999999999999999999998877654431      


Q ss_pred             -CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHH
Q 008134          312 -PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGV  390 (576)
Q Consensus       312 -~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~  390 (576)
                       ..+...+++++..|++|+.++..++.++..|+++++.+.....+       .+...++++++|+++++|++++.+....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~-------~~~~~i~~~~~t~~~~~P~~l~~~~~~~  290 (562)
T 3ite_A          218 SLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLD-------DLPRTFRELGVTHAGIVPSLLDQTGLVP  290 (562)
T ss_dssp             GGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHH-------SHHHHHHHTTCCEEEECHHHHHHHTCCG
T ss_pred             hcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHH-------HHHHHHHHcCCCEEEcCHHHHhhcccCc
Confidence             14778899999999999999988999999999999855432222       1334489999999999999887642210


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhC
Q 008134          391 VKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG  470 (576)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~  470 (576)
                                                                         ...++||.+++||+++++++.++|++.++
T Consensus       291 ---------------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~  319 (562)
T 3ite_A          291 ---------------------------------------------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDR  319 (562)
T ss_dssp             ---------------------------------------------------GGSTTCCEEEEESSCCCHHHHHHHTTCSS
T ss_pred             ---------------------------------------------------cccCceEEEEEecCCCCHHHHHHHhhCCC
Confidence                                                               01248999999999999999999999889


Q ss_pred             CceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          471 APIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       471 ~~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      ++++|.||+||+++.++..... .....++|+|+++++++|+|++++..   +++|+.|||+|+|+++++|||++|+.|+
T Consensus       320 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~---~~~g~~GEl~v~g~~v~~GY~~~p~~t~  396 (562)
T 3ite_A          320 VALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEH---VKKGMAGELVIEGSLVANGYLNRPDAKG  396 (562)
T ss_dssp             CEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCB---CCTTSCEEEEEESTTSCCEESSCTTCCS
T ss_pred             cEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCC---CCCCCceEEEEeccccchhhCCCccccc
Confidence            9999999999998877655433 33457999999999999999655544   5799999999999999999999999998


Q ss_pred             hhhcccccccceeeeCCeecccCccC
Q 008134          550 EVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      ..|   .+|.+||+|||+|++|+||.
T Consensus       397 ~~~---~~g~~w~~TGDlg~~d~dG~  419 (562)
T 3ite_A          397 FCD---INGRKMYRTGDIVRMDADSS  419 (562)
T ss_dssp             EEE---ETTEEEEEEEEEEEECTTSC
T ss_pred             ccc---CCCCEEEecCCEEEEcCCCe
Confidence            665   46677999999999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.3e-59  Score=506.53  Aligned_cols=373  Identities=23%  Similarity=0.277  Sum_probs=297.7

Q ss_pred             CCCCHHHHHHHHHHhCCC-CcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEE
Q 008134           80 GASTMAALFEQSCKSHPQ-DRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRA  158 (576)
Q Consensus        80 ~~~tl~~~~~~~a~~~Pd-~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V  158 (576)
                      .+.++.++|+++++++|+ ++|+++            ++           +++||+||.++++++|++|.     .|++|
T Consensus        20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~-----------~~~Ty~eL~~~~~~~A~~L~-----~~~~V   71 (505)
T 3nyq_A           20 HMSSLFPALSPAPTGAPADRPALRF------------GE-----------RSLTYAELAAAAGATAGRIG-----GAGRV   71 (505)
T ss_dssp             ----CCTTTSSCCCSGGGGSEEEEE------------TT-----------EEEEHHHHHHHHHHHHTTCC--------CE
T ss_pred             ccchhHHHHHHHHHhCCCCCeEEEE------------CC-----------eeeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence            357899999999999987 999986            33           37999999999999998874     38899


Q ss_pred             EEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCC
Q 008134          159 AILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSE  238 (576)
Q Consensus       159 ~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~  238 (576)
                      +++++|++++++++|||+++|+++|||+|.++.+++.+++++++++++|++.+...     ......+..+ .++..   
T Consensus        72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~-~~~~~---  142 (505)
T 3nyq_A           72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERV-DVDVR---  142 (505)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEE-ECCTT---
T ss_pred             EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhcccccc-ccccc---
Confidence            99999999999999999999999999999999999999999999999999865210     0111111111 11100   


Q ss_pred             CCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCc
Q 008134          239 KDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSD  318 (576)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d  318 (576)
                                              .....+.....+++++||+|||||||.||||+++|+++++.+.+....+ ++.++|
T Consensus       143 ------------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d  197 (505)
T 3nyq_A          143 ------------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGED  197 (505)
T ss_dssp             ------------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTC
T ss_pred             ------------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCc
Confidence                                    0111223455789999999999999999999999999999999998888 999999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHH
Q 008134          319 VYLAYLPLAHVLELAA-ESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKV  394 (576)
Q Consensus       319 ~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~  394 (576)
                      ++++.+|++|..++.. ++.+|..|+++++.+   +..+.+.           + ++++|+++++|+++..+.+......
T Consensus       198 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~  265 (505)
T 3nyq_A          198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADP  265 (505)
T ss_dssp             EEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCH
T ss_pred             EEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCc
Confidence            9999999999999864 889999999999843   3333333           6 7899999999999999876422100


Q ss_pred             HhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCcee
Q 008134          395 EEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIG  474 (576)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~  474 (576)
                      ..                                       ..     ..+++|.+++||+++++++.+++.+.++++++
T Consensus       266 ~~---------------------------------------~~-----~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~  301 (505)
T 3nyq_A          266 EL---------------------------------------AK-----ALAGARLLVSGSAALPVHDHERIAAATGRRVI  301 (505)
T ss_dssp             HH---------------------------------------HH-----HHHHCSEEEECSSCCCHHHHHHHHHHHSCCCE
T ss_pred             hh---------------------------------------hc-----ccccceEEEECCCCCCHHHHHHHHHhcCCeee
Confidence            00                                       00     01379999999999999999999999999999


Q ss_pred             cccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcc
Q 008134          475 QAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKV  554 (576)
Q Consensus       475 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~  554 (576)
                      |.||+||+++.++.........+++|+|++|++++|+| +++..++.++.|++|||+|+|++++.|||++|+.|+++|  
T Consensus       302 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--  378 (505)
T 3nyq_A          302 ERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF--  378 (505)
T ss_dssp             EEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB--
T ss_pred             cccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh--
Confidence            99999999887776655555668999999999999999 667665544558999999999999999999999999999  


Q ss_pred             cccccceeeeCCeecccCccC
Q 008134          555 NFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       555 ~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .++|  ||||||+|++|+||.
T Consensus       379 ~~~g--~y~TGDl~~~~~dG~  397 (505)
T 3nyq_A          379 TEDG--FFRTGDMAVRDPDGY  397 (505)
T ss_dssp             CTTS--CEEEEEEEEECTTSC
T ss_pred             cCCC--CCccCCeEEECCCcc
Confidence            5577  999999999999985

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.7e-58  Score=495.41  Aligned_cols=383  Identities=18%  Similarity=0.216  Sum_probs=296.4

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      |+.++|+++++++||++|+++            +++           ++||+||.++++++|++|+++   +||+|++++
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~   55 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI   55 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred             CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence            567899999999999999986            333           799999999999999999997   899999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCCCC
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSG  242 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~~~  242 (576)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+......... ....+..+.........    
T Consensus        56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  130 (501)
T 3ipl_A           56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL----  130 (501)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-----------------
T ss_pred             CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc----
Confidence            9999999999999999999999999999999999999999999999877543321111 00111111100000000    


Q ss_pred             CCCCCCCceE-eehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 008134          243 VSGGISNWTV-SSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYL  321 (576)
Q Consensus       243 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l  321 (576)
                       ......... ...+.................++++++|+|||||||.||||+++|+++++.+......+ ++.++|+++
T Consensus       131 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l  208 (501)
T 3ipl_A          131 -LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWL  208 (501)
T ss_dssp             --------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEE
T ss_pred             -cccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEE
Confidence             000000000 00011111000001112345789999999999999999999999999999999998888 999999999


Q ss_pred             EecChHHHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcC
Q 008134          322 AYLPLAHVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKG  398 (576)
Q Consensus       322 ~~~pl~~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~  398 (576)
                      +.+|++|++++..++.+++.|+++++.+   +..+.+.           ++++++|+++++|+++..+.+....      
T Consensus       209 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~------  271 (501)
T 3ipl_A          209 SVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLH------  271 (501)
T ss_dssp             ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCC------
T ss_pred             EeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCC------
Confidence            9999999999998899999999999943   4444444           9999999999999999988763210      


Q ss_pred             chhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccC
Q 008134          399 GLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYG  478 (576)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG  478 (576)
                                                                  ...+||.+++||+++++++.+++.+ ++++++|.||
T Consensus       272 --------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG  306 (501)
T 3ipl_A          272 --------------------------------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFG  306 (501)
T ss_dssp             --------------------------------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEE
T ss_pred             --------------------------------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEecccc
Confidence                                                        0027999999999999999999887 4999999999


Q ss_pred             cccccCCccccCCC--CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccc
Q 008134          479 LTETCAGSTFSEWD--DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNF  556 (576)
Q Consensus       479 ~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~  556 (576)
                      +||+++.++.....  .....++|+|+++++++|+|++         ++..|||+|+|+++++|||++|+.|++ |   .
T Consensus       307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~---------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~  373 (501)
T 3ipl_A          307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN---------KEGHGELMIKGANVMNGYLYPTDLTGT-F---E  373 (501)
T ss_dssp             EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC---------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---E
T ss_pred             ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC---------CCCccEEEEeccchhhhhCcChhhcch-h---c
Confidence            99998755443322  1345789999999999999942         456799999999999999999999987 6   4


Q ss_pred             cccceeeeCCeecccCccC
Q 008134          557 HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       557 ~g~~~~~TGDlg~~d~d~e  575 (576)
                      +|  ||+|||+|++|+||.
T Consensus       374 ~g--~~~TGDl~~~~~~G~  390 (501)
T 3ipl_A          374 NG--YFNTGDIAEIDHEGY  390 (501)
T ss_dssp             TT--EEEEEEEEEECTTSC
T ss_pred             CC--ceecCCEEEEcCCCe
Confidence            67  999999999999985

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.7e-35  Score=301.39  Aligned_cols=206  Identities=19%  Similarity=0.205  Sum_probs=175.1

Q ss_pred             CCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCc-cc
Q 008134          274 QNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGST-LT  352 (576)
Q Consensus       274 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~-~~  352 (576)
                      .+++|||+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|++++..++.++..|+++++.++ ..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~  114 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN  114 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence            47899999999999999999999999999999999998 99999999999999999999999999999999998443 22


Q ss_pred             ccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHH
Q 008134          353 MTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWD  432 (576)
Q Consensus       353 l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (576)
                      ....           ++++++|++.++|+++..+++.....                                       
T Consensus       115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~---------------------------------------  144 (358)
T 4gs5_A          115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATS---------------------------------------  144 (358)
T ss_dssp             TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTG---------------------------------------
T ss_pred             HHHH-----------HHHhCCeEEEcChHHHHHhhcccccc---------------------------------------
Confidence            3333           89999999999999999887632110                                       


Q ss_pred             HHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEee
Q 008134          433 AIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVS  512 (576)
Q Consensus       433 ~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd  512 (576)
                               ...++||.+++||+++++++.+++++. +++++|.||+||+++.++.........+++|.|.||+++.+.+
T Consensus       145 ---------~~l~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~  214 (358)
T 4gs5_A          145 ---------GQVDRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE  214 (358)
T ss_dssp             ---------GGGGGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred             ---------ccCCcceEEEEcccCCCchheeccccc-CceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence                     011489999999999999999999874 9999999999999988887777767778899999999887643


Q ss_pred             cCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          513 WDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       513 ~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                                    .|||+++|+.+                  .+|  ||+|||+|++|+||
T Consensus       215 --------------~Gel~~~g~~~------------------~~g--~~~TGDlg~~d~~g  242 (358)
T 4gs5_A          215 --------------RGCLHISGAVT------------------NGQ--TVQTNDLVEIHGNA  242 (358)
T ss_dssp             --------------TSEEEEESGGG------------------TTC--CEEEEEEEEECSSE
T ss_pred             --------------cCceEEecccc------------------cCc--ceecCCccccccCc
Confidence                          48999988632                  356  99999999999986

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=5.7e-34  Score=301.75  Aligned_cols=242  Identities=15%  Similarity=0.080  Sum_probs=183.7

Q ss_pred             EeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHh---hCCCCCCCcEEEEecCh-H
Q 008134          252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT---LIPNPGRSDVYLAYLPL-A  327 (576)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~  327 (576)
                      +...+++....   +.......++++++|+|||||||.||||+++|+++.+.......   .+ ++.++|++++.+|+ .
T Consensus        72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence            45556665432   11223456789999999999999999999999999876654433   56 88999999999998 5


Q ss_pred             HHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL  404 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  404 (576)
                      |..++...+.++..|+++++.+   +..+.+           .|+++++|+++++|+++..|.+........        
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----------~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------  208 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQ-----------LIRDFEPKIILVTPSYMLNLIDEMVRQGMD--------  208 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHH-----------HHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHH-----------HHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------
Confidence            7777777888999999998843   333443           499999999999999999987753321000        


Q ss_pred             HHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccC
Q 008134          405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA  484 (576)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~  484 (576)
                                                           ...++||.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus       209 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  251 (443)
T 2y4o_A          209 -------------------------------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG  251 (443)
T ss_dssp             -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred             -------------------------------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence                                                 0014899999999999999999999989999999999999854


Q ss_pred             C-ccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceee
Q 008134          485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLC  563 (576)
Q Consensus       485 ~-~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~  563 (576)
                      . .+..... ... .++.|.+++.++|+|+++++.   +++|+.|||+|+|            .|+++|   +++  ||+
T Consensus       252 ~~~~~~~~~-~~~-g~~~~~~~~~~~i~d~~~g~~---~~~G~~Gel~v~~------------~t~~~~---p~~--~y~  309 (443)
T 2y4o_A          252 PGVACECVE-TKD-GPVIWEDHFYPEIIDPVTGEV---LPDGSQGELVFTS------------LTKEAM---PVI--RYR  309 (443)
T ss_dssp             EEEEEECTT-TCC-SEEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CCS--SEE
T ss_pred             CeEEeccCC-CCC-ceEEccCCeEEEEEcCCCCCC---CCCCCceEEEEeC------------CCcccC---hhh--eee
Confidence            3 3322221 111 255577899999999666665   5699999999998            244556   567  999


Q ss_pred             eCCeecccCc-cC
Q 008134          564 ICLYVSCDKT-LE  575 (576)
Q Consensus       564 TGDlg~~d~d-~e  575 (576)
                      |||+|++|+| |.
T Consensus       310 TGDl~~~~~~cG~  322 (443)
T 2y4o_A          310 TRDLTALLPPTAR  322 (443)
T ss_dssp             EEEEECEECCSSS
T ss_pred             cCCEEEEcCCCCC
Confidence            9999999998 74

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=5.7e-33  Score=293.47  Aligned_cols=226  Identities=15%  Similarity=0.122  Sum_probs=177.7

Q ss_pred             CCCCC-CCeEEEEeecCCCCCCceEEechHHHHHHHHHH---HhhCCCCCCCcEEEEecChHHHHH-HHHHHHHHHhCce
Q 008134          270 SLPSQ-NGVAVIMYTSGSTGLPKGVMITHGNIVATAAAI---KTLIPNPGRSDVYLAYLPLAHVLE-LAAESIMLCAGCA  344 (576)
Q Consensus       270 ~~~~~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~~d~~l~~~pl~~~~~-~~~~~~~l~~G~~  344 (576)
                      ....+ +++++|+|||||||.||||+++|+++.+.....   ...+ ++.++|++++.+|+.|..+ +...+.++..|++
T Consensus        80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            34456 899999999999999999999999998766555   3345 7899999999999865444 4457888999999


Q ss_pred             EEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCcc
Q 008134          345 IGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWF  421 (576)
Q Consensus       345 ~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (576)
                      +++.+   +..+.+.           |++++||+++++|+++..|.+........                         
T Consensus       159 ~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------  202 (436)
T 3qov_A          159 TVPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------------  202 (436)
T ss_dssp             EECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------------
T ss_pred             EEeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------------
Confidence            99843   3334444           99999999999999999998754321100                         


Q ss_pred             ccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccCCccccCCCCCCCCccCC
Q 008134          422 GAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGP  501 (576)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~  501 (576)
                                          ...++||.+++|||++++++.++|++.+|++++|.||+||+++.++.....  ....+|.
T Consensus       203 --------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~  260 (436)
T 3qov_A          203 --------------------PRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHF  260 (436)
T ss_dssp             --------------------TTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEE
T ss_pred             --------------------cccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEE
Confidence                                001489999999999999999999999999999999999996553322221  1224677


Q ss_pred             CCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceeeeCCeecccCcc
Q 008134          502 PVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTL  574 (576)
Q Consensus       502 p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~  574 (576)
                      |.++++++|+|++++..   +++|+.|||+|+|.            |++.|   ++|  ||+|||+|++|+||
T Consensus       261 ~~~~~~v~i~d~~~g~~---~~~g~~Gel~v~~~------------~~~~~---~~~--~y~TGDl~~~~~~g  313 (436)
T 3qov_A          261 WEDCYLVEIIDPETGEP---VPEGEIGELVLTTL------------DREMM---PLI--RYRTRDLTRILPGK  313 (436)
T ss_dssp             CTTTEEEEEECTTTCSB---CSTTCCEEEEEEES------------SCCSS---CCC--SEEEEEEECEECSC
T ss_pred             ccCceEEEEEECCCCCC---CCCCCceEEEEecc------------CcCCc---eEE--EEEcCCEEEEcCCC
Confidence            88899999999777765   56999999999983            44455   567  99999999999986

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.2e-32  Score=291.16  Aligned_cols=242  Identities=17%  Similarity=0.111  Sum_probs=184.0

Q ss_pred             EeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEecCh-H
Q 008134          252 VSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPL-A  327 (576)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl-~  327 (576)
                      +...+++....   +.......++++++|+|||||||.||||+++|+++.+......   ..+ ++.++|++++.+|+ +
T Consensus        70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~  145 (437)
T 2y27_A           70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGL  145 (437)
T ss_dssp             CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred             CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccc
Confidence            34556665432   1112345678999999999999999999999999987765443   245 88999999999998 6


Q ss_pred             HHHHHHHHHHHHHhCceEEECC---cccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHH
Q 008134          328 HVLELAAESIMLCAGCAIGYGS---TLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNL  404 (576)
Q Consensus       328 ~~~~~~~~~~~l~~G~~~~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~  404 (576)
                      |..++...+.++..|+++++.+   +..+.+.           |++++||+++++|+++..|.+........        
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------  206 (437)
T 2y27_A          146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLD--------  206 (437)
T ss_dssp             SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred             cccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCC--------
Confidence            8888877888999999998743   3334444           99999999999999999987754321000        


Q ss_pred             HHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCceecccCcccccC
Q 008134          405 FNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCA  484 (576)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~  484 (576)
                                                           ...++||.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus       207 -------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g  249 (437)
T 2y27_A          207 -------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMG  249 (437)
T ss_dssp             -------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTE
T ss_pred             -------------------------------------cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcC
Confidence                                                 0014899999999999999999999888999999999999854


Q ss_pred             C-ccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchhhhcccccccceee
Q 008134          485 G-STFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFHCVWMLC  563 (576)
Q Consensus       485 ~-~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~~f~~~~~g~~~~~  563 (576)
                      . .+..... .. ..++.|.+++.++|+|++++..   +++|+.|||+|+|            .|+++|   +++  ||+
T Consensus       250 ~~~~~~~~~-~~-~g~~~~~~~~~~~i~d~~~g~~---~~~g~~Gel~v~~------------~t~~~~---~~~--~y~  307 (437)
T 2y27_A          250 PGVASECVE-TK-DGPTIWEDHFYPEIIDPETGEV---LPDGELGELVFTS------------LTKEAL---PII--RYR  307 (437)
T ss_dssp             EEEEECCTT-TC-SSCEECTTTEEEEEECTTTCCB---CCTTCCEEEEEEE------------SSCSSS---CCC--SEE
T ss_pred             CeeEEecCC-CC-CceeEccCceEEEEEcCCCCCC---CCCCCccEEEEec------------CCcCCc---hhh--eee
Confidence            3 3332221 11 1255677899999999666655   5699999999998            245556   567  999


Q ss_pred             eCCeecccC-ccC
Q 008134          564 ICLYVSCDK-TLE  575 (576)
Q Consensus       564 TGDlg~~d~-d~e  575 (576)
                      |||+|++|+ ||.
T Consensus       308 TGDl~~~~~~~G~  320 (437)
T 2y27_A          308 TRDLTRLLPGTAR  320 (437)
T ss_dssp             EEEEECEECCSSS
T ss_pred             cCCEEEEeCCCCC
Confidence            999999998 674

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=4.1e-30  Score=265.51  Aligned_cols=209  Identities=15%  Similarity=0.121  Sum_probs=156.7

Q ss_pred             CCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH---hhCCCCCCCcEEEEecCh-HHHHHHHHHHHHHHhCceEE
Q 008134          271 LPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK---TLIPNPGRSDVYLAYLPL-AHVLELAAESIMLCAGCAIG  346 (576)
Q Consensus       271 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl-~~~~~~~~~~~~l~~G~~~~  346 (576)
                      ...++++++|+|||||||.||||+++|+++.+...+..   ..+ ++.++|++++.+|+ +|+.++...+.++..|+.++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            34678999999999999999999999999999888654   334 67899999999999 99999988888899999443


Q ss_pred             E--CCcc---ccccc---------chhhccCccccceeecccEEEecHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 008134          347 Y--GSTL---TMTDT---------SSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRR  412 (576)
Q Consensus       347 ~--~~~~---~l~~~---------~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (576)
                      .  +++.   .+...         .......+++.++++++|++.++|+++..|++......                  
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~------------------  227 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVL------------------  227 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHH------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc------------------
Confidence            3  2222   00000         00000023334899999999999999999876421100                  


Q ss_pred             HhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH-hhh-CCceecccCcccccCCccccC
Q 008134          413 LAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN-ICM-GAPIGQAYGLTETCAGSTFSE  490 (576)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~-~~~-~~~l~~~YG~TE~~~~~~~~~  490 (576)
                                                   ...++||.+++|||++++++.++++ +.+ +++++|.||+||+++++....
T Consensus       228 -----------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~  278 (369)
T 3hgu_A          228 -----------------------------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL  278 (369)
T ss_dssp             -----------------------------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC
T ss_pred             -----------------------------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc
Confidence                                         0013799999999999999999999 888 899999999999986653221


Q ss_pred             CCCCCCCccCCC------CCCcEEEEeecCCCCCcCCCCCCCCceEEEccC
Q 008134          491 WDDPSVGRVGPP------VPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGF  535 (576)
Q Consensus       491 ~~~~~~~~vG~p------~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~  535 (576)
                           ..++|+|      +++++++|+|+++++.   +++|++|||+|++.
T Consensus       279 -----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~---vp~G~~GEl~vt~l  321 (369)
T 3hgu_A          279 -----ITSESQQVIYDSFSPFITYDVVDSITAQT---VEYGERGNVIVTHL  321 (369)
T ss_dssp             -----BCTTCSSCEEECCTTTEEEEEECTTTCSB---CCTTCEEEEEEEEE
T ss_pred             -----cccCCCcccccCCCCCeEEEEECCCCCcC---CCCCCceEEEEEEc
Confidence                 1158999      9999999999657765   66999999999973

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=96.40  E-value=0.021  Score=60.91  Aligned_cols=31  Identities=16%  Similarity=0.208  Sum_probs=26.2

Q ss_pred             CCCCeEEEEeecCCC-CCCceEEechHHHHHH
Q 008134          273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVAT  303 (576)
Q Consensus       273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~~  303 (576)
                      .++.+.++.-||||| |+||-+.+|.+.+-..
T Consensus        97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~  128 (609)
T 4b2g_A           97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR  128 (609)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence            566678999999999 8899999999877653

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.19  E-value=0.078  Score=56.36  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=25.6

Q ss_pred             CCCCeEEEEeecCCC-CCCceEEechHHHHH
Q 008134          273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVA  302 (576)
Q Consensus       273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~  302 (576)
                      .++.+.+..-||||| |++|-+.+|.+.+-.
T Consensus        91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~  121 (581)
T 4eql_A           91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDN  121 (581)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence            456677999999999 789999999998755

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=95.82  E-value=0.12  Score=54.74  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=25.6

Q ss_pred             CCCCeEEEEeecCCC-CCCceEEechHHHHH
Q 008134          273 SQNGVAVIMYTSGST-GLPKGVMITHGNIVA  302 (576)
Q Consensus       273 ~~~~~a~i~~TSGTT-G~PKgV~~sh~~l~~  302 (576)
                      .++.+.+..-||||| |++|-+.+|.+.+-.
T Consensus        96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            556677899999999 889999999987755

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=92.64  E-value=1.2  Score=45.74  Aligned_cols=105  Identities=10%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (576)
                      -.+|++.+...+..++..+...|+.++|++...++-  ....+...++++..|+..+++++ ...+++...+++.++.++
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l  186 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII  186 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence            358999999888888888888999999999998885  34445567888999999987765 478889999999999999


Q ss_pred             EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134          207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN  234 (576)
Q Consensus       207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~  234 (576)
                      +..+..+..+.+...      ....++.+++-++
T Consensus       187 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  220 (437)
T 2y27_A          187 MVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE  220 (437)
T ss_dssp             EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence            999988776655432      1245666665443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=92.22  E-value=1.2  Score=45.72  Aligned_cols=105  Identities=13%  Similarity=-0.015  Sum_probs=82.9

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (576)
                      -.+|.+.+...+..++..+...|+.++|++...++-  ....+..+++++..|+..++.++. ..+++...+++.++.++
T Consensus       104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~  182 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL  182 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence            368999999999999998988999999999999874  345566778889999998887654 67889999999999999


Q ss_pred             EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134          207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN  234 (576)
Q Consensus       207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~  234 (576)
                      +..+.....+.+...      .+..++.+++-++
T Consensus       183 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  216 (436)
T 3qov_A          183 HAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE  216 (436)
T ss_dssp             ECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence            999988777665431      1345666666443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.96  E-value=1.4  Score=45.21  Aligned_cols=105  Identities=10%  Similarity=-0.009  Sum_probs=81.5

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--HHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEE
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETC--VEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTL  206 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~s--~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v  206 (576)
                      -.+|++.+...+..++..+...|+.++|++...++-+  ...+...++++..|+..+++++. ..+++...+++.++.++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence            3579999998888888888889999999999988853  44456678888999998887664 78889999999999999


Q ss_pred             EECchhhhHHHHhhh------cCCCccEEEEecC
Q 008134          207 ICDSKQLKKLSAVSS------SLKTIKNVIYFEN  234 (576)
Q Consensus       207 i~~~~~~~~l~~~~~------~~~~~~~vv~~~~  234 (576)
                      +..+..+..+.+...      ....++.+++-++
T Consensus       189 ~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe  222 (443)
T 2y4o_A          189 LVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE  222 (443)
T ss_dssp             EECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred             EECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence            999988776655431      1245666665443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=81.16  E-value=7.9  Score=38.30  Aligned_cols=87  Identities=11%  Similarity=-0.010  Sum_probs=64.9

Q ss_pred             eEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--cHHHHHHHHHHHhCCCEEEEccCCCCHH--------------
Q 008134          129 EWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAET--CVEWFIAFQGCFRQSITVVTIYSSLGED--------------  192 (576)
Q Consensus       129 ~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~--s~~~~va~lA~~~~G~~~vpl~~~~~~~--------------  192 (576)
                      ..+|.+.+...+..++..+...|+.++|++..+++-  ..--+...++++..|+.+++.+  ..+.              
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~  186 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV  186 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence            357899998888877777778899999999999886  2333444555589999666543  2333              


Q ss_pred             ---------HHHHHHhccCceEEEECchhhhHHH
Q 008134          193 ---------ALIHSLNETQVTTLICDSKQLKKLS  217 (576)
Q Consensus       193 ---------~l~~~l~~~~~~~vi~~~~~~~~l~  217 (576)
                               ++...+++.++.++++.+.....+.
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  220 (369)
T 3hgu_A          187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL  220 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence                     6666899999999999888766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	576
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-47
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-39
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	7e-35
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-31
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-19
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-16
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-07
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	5e-16

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  172 bits (436), Expect = 7e-47
 Identities = 70/464 (15%), Positives = 137/464 (29%), Gaps = 87/464 (18%)

Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQS 179
           +E       +  +Y E+    C FA+ L++ G       AI      E  +A   C R  
Sbjct: 93  WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152

Query: 180 ITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAV-----------SSSLKTIKN 228
                I+     +A+   + ++    +I   + ++   ++           + ++ ++++
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212

Query: 229 VIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTG 288
           VI  +  GS+ D     G   W      +     +   ++   P       I+YTSGSTG
Sbjct: 213 VIVLKRTGSDID--WQEGRDLWWRDLIEKASPEHQPEAMNAEDP-----LFILYTSGSTG 265

Query: 289 LPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAE--SIMLCAGCAIG 346
            PKGV+ T G  +  AA     + +    D+Y     +  V   +      + C    + 
Sbjct: 266 KPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 325

Query: 347 YGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFN 406
           +         +   +      V   +  ++   P                          
Sbjct: 326 FEGVPNWPTPARMCQ-----VVDKHQVNILYTAPTAI----------------------- 357

Query: 407 IGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFIN 466
               R L A             +                  R +   G P++ ++  +  
Sbjct: 358 ----RALMAEGDKAIEGTDRSSL------------------RILGSVGEPINPEAWEWYW 395

Query: 467 ICMG---APIGQAYGLTETCAGSTFSEWDDPSV--GRVGPPVPCCYIKLVSWDEGGYKTS 521
             +G    P+   +  TET             +  G    P       LV  D  G    
Sbjct: 396 KKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALV--DNEG---- 449

Query: 522 DKPMP---RGEIVVGG--FNVTAGYFNNPGKTSEVYKVNFHCVW 560
             P      G +V+           F +  +  + Y   F  ++
Sbjct: 450 -HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 492

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  148 bits (375), Expect = 3e-39
 Identities = 87/482 (18%), Positives = 140/482 (29%), Gaps = 104/482 (21%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
            +    E++     +   +                    +LH G+    TY EV+ RA  
Sbjct: 12  NLWDFLERAAALFGRKEVV-------------------SRLHTGEVHRTTYAEVYQRARR 52

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
              GL   G  V  R A L         A+         + T    L    + + LN  +
Sbjct: 53  LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
              L+ D   L  + A+   LKT+++ +  +    E                     +  
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------------GYLAYEEA 156

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATA-AAIKTLIPNPGRSDVYL 321
                DP    +     + YT+G+TGLPKGV+ +H  +V  + AA           DV L
Sbjct: 157 LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVL 216

Query: 322 AYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA 381
             +P+ HV            G             +  ++  G          T  A VP 
Sbjct: 217 PVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-------GVTFTAGVPT 269

Query: 382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRA 441
           ++                                              L D +     R 
Sbjct: 270 VW--------------------------------------------LALADYLESTGHRL 285

Query: 442 VLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDP------- 494
                +R ++ GG+             MG  + Q YGLTET      +            
Sbjct: 286 ---KTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341

Query: 495 ----SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE 550
                  + G P+P   +++   DE G          GE+ + G  +T GY+ N   T  
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVA--DEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 399

Query: 551 VY 552
             
Sbjct: 400 AL 401

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (345), Expect = 7e-35
 Identities = 62/454 (13%), Positives = 125/454 (27%), Gaps = 64/454 (14%)

Query: 120 FEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAILAETCVEWFIAFQGCFRQ 178
           FE    G     TY E+ +  C  A  L  + G       A+      E  I      R 
Sbjct: 80  FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139

Query: 179 SITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSS---LKTIKNVIYFEND 235
                 +++    ++L   +N+     +I   +  +    + +       ++      + 
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199

Query: 236 GSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMI 295
              + +       +         EK   ++    +         ++YTSGSTG PKGV  
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQH 259

Query: 296 THGNIVATAAAIKTLIPNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTD 355
           +    +  A        +  + DV+     +  +         +  G  +   +TL    
Sbjct: 260 STAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWI----TGHTYVVYGPLLYGCATLVFEG 315

Query: 356 TSSKIKKGTKGD-VSVLKPTLMAAVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLA 414
           T +        D +   K T     P                              R L 
Sbjct: 316 TPAYPNYSRYWDIIDEHKVTQFYVAPTAL---------------------------RLLK 348

Query: 415 AVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMG---A 471
               S+     L+ +                  R +   G P++A+   + +  +G    
Sbjct: 349 RAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEKIGKNEI 390

Query: 472 PIGQAYGLTETCAGSTFSEWDDPS---VGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRG 528
           PI   Y  TE+ +          +    G    P       ++  D    +  +     G
Sbjct: 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEG 448

Query: 529 EIVVGGF--NVTAGYFNNPGKTSEVYKVNFHCVW 560
            + V     +     + N  +  + Y   +   +
Sbjct: 449 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY 482

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  126 bits (316), Expect = 2e-31
 Identities = 89/473 (18%), Positives = 153/473 (32%), Gaps = 84/473 (17%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           T      ++ K +                +  +D      +        TY E F+ +  
Sbjct: 18  TAGEQLHKAMKRYALVP----------GTIAFTDAHIEVNI--------TYAEYFEMSVR 59

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            A  +  +G N + R  + +E  +++F+   G     + V        E  L++S+N +Q
Sbjct: 60  LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119

Query: 203 VTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKLG 262
            T +    K L+K+  V   L  I+ +I  ++          G  S +T  +        
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHLPPGFN 174

Query: 263 KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRSDVYLA 322
           +   V  S      +A+IM +SGSTGLPKGV + H       +  +  I           
Sbjct: 175 EYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 234

Query: 323 YLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAI 382
                          ++      G  +TL       ++    + +  +   +L       
Sbjct: 235 L-------------SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD----- 276

Query: 383 FDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAV 442
                                     YK + A +  + F  +    ++    +       
Sbjct: 277 --------------------------YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA 310

Query: 443 LGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP 502
            GG       G        +          I Q YGLTET +    +   D   G VG  
Sbjct: 311 SGGAPLSKEVG--------EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362

Query: 503 VPCCYIKLVSWDEGGYKTSDKPMP---RGEIVVGGFNVTAGYFNNPGKTSEVY 552
           VP    K+V  D G      K +    RGE+ V G  + +GY NNP  T+ + 
Sbjct: 363 VPFFEAKVVDLDTG------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 409

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 90.1 bits (222), Expect = 1e-19
 Identities = 75/484 (15%), Positives = 133/484 (27%), Gaps = 108/484 (22%)

Query: 83  TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACS 142
           T+  +  ++    P    L             + G +            T+ E+  R  +
Sbjct: 3   TVNEMLRRAATRAPDHCAL----------AVPARGLRL-----------THAELRARVEA 41

Query: 143 FASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQ 202
            A+ L   G     R A++A    +  IA     R       +   L    L   +   +
Sbjct: 42  VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101

Query: 203 VTTLICD-SKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSEVEKL 261
           +T  +    +Q+      S S   I  +     DG     G                   
Sbjct: 102 MTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG------------------- 142

Query: 262 GKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKT-LIPNPGRSDVY 320
               P++         A I YTSG+TGLPK  +I      +    + T +    GR +V 
Sbjct: 143 ---PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199

Query: 321 LAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVP 380
           L  +PL HV+   A  +   A               + ++ +  +       PT + A+ 
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALA 259

Query: 381 AIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVR 440
           A                                                   ++   S+R
Sbjct: 260 AAAAHAG--------------------------------------------SSLKLDSLR 275

Query: 441 AVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVG 500
            V           GA +       ++  +       YG TE        +    +    G
Sbjct: 276 HV--------TFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPG 327

Query: 501 PPVPCCYIKLVSWDEGGYKTSDKPMPRGE----IVVGGFNVTAGYFNNPGKTSEVYKVNF 556
                  +++           D+ +  GE    IV    +   GY N P  T+E  +  +
Sbjct: 328 FFSEVRIVRIGGGV-------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGW 380

Query: 557 HCVW 560
           +   
Sbjct: 381 YRTS 384

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 79.6 bits (195), Expect = 2e-16
 Identities = 66/474 (13%), Positives = 137/474 (28%), Gaps = 76/474 (16%)

Query: 75  EVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYG 134
           +  +    T+  LFE+     P +  +              +  +            TY 
Sbjct: 16  KAEYPRDKTIHQLFEEQVSKRPNNVAI------------VCENEQL-----------TYH 52

Query: 135 EVFDRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDAL 194
           E+  +A   A   +  G   DT   I+ E  ++ FI      +     V I     ++ +
Sbjct: 53  ELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERI 112

Query: 195 IHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSS 254
            + L+++Q   L+     +  +  +                        +G +  +   +
Sbjct: 113 QYILDDSQARMLLTQKHLVHLIHNIQ----------------------FNGQVEIFEEDT 150

Query: 255 FSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNP 314
               E      P   +  +      ++YTSG+TG PKG M+ H  I       +    N 
Sbjct: 151 IKIREGTNLHVPSKSTDLA-----YVIYTSGTTGNPKGTMLEHKGISNLKVFFEN-SLNV 204

Query: 315 GRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPT 374
              D    +  ++    +    + L  G ++      T+ D     +   + +++V   T
Sbjct: 205 TEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITV--IT 262

Query: 375 LMAAVPAIFDRVREGVVKKVEEKGG------LTKNLFNIGYKRRLAAVEGSWFGAWGLER 428
           L        D  R   ++ +   G       + K    + Y       E +      +  
Sbjct: 263 LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVAT 322

Query: 429 MLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTF 488
                        +   +I  +       S        +C+G   G A G  +    ++ 
Sbjct: 323 KETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAG--ELCIGGE-GLARGYWKRPELTSQ 379

Query: 489 SEWDDPSVGRVGPPVPCCYIKLVSWDEGGY-----KTSDKPMPRGEIVVGGFNV 537
              D+P V                W   G      +  ++      + + G  V
Sbjct: 380 KFVDNPFVPGEK---LYKTGDQARWLSDGNIEYLGRIDNQ------VKIRGHRV 424

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 447 IRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVGRVGPP-VPC 505
           I+ +I  G+  S                 AYG TET   +T       ++G   P   P 
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336

Query: 506 CYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVN 555
              ++   DE            GE+ +GG  +  GY+  P  TS+ +  N
Sbjct: 337 QNTQIYIVDENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN 384

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 78.5 bits (192), Expect = 5e-16
 Identities = 66/481 (13%), Positives = 112/481 (23%), Gaps = 93/481 (19%)

Query: 78  WKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVF 137
           W G  T   L       +  DR              A        +  G+  W +Y E+ 
Sbjct: 22  WAG-ETFGDLLRDRAAKYG-DR-------------IA--------ITCGNTHW-SYRELD 57

Query: 138 DRACSFASGLVNFGHNVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHS 197
            RA   A+G    G     R  +      E+F      FR     V    S     + + 
Sbjct: 58  TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117

Query: 198 LNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKDSGVSGGISNWTVSSFSE 257
               +    I                               K   +   I       F  
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRS------------LARQVQSKLPTLKNIIVAGEAEEFLP 165

Query: 258 VEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGRS 317
           +E L    PV       + VA +  + GSTGL K +  TH + + +      +      +
Sbjct: 166 LEDL-HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224

Query: 318 DVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMA 377
               A     +                +  G  + ++                  P+   
Sbjct: 225 VYLAALPMAHNY-----PLSSPGVLGVLYAGGRVVLSP----------------SPSPDD 263

Query: 378 AVPAIFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFK 437
           A P I             E+  +T                 S        ++L       
Sbjct: 264 AFPLI-------------EREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL------- 303

Query: 438 SVRAVLGGRIRFMICGGAPLSADSQRFINICMGAPIGQAYGLTETCAGSTFSEWDDPSVG 497
                +GG            +        +   A     Y   +        E    + G
Sbjct: 304 ----QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE-----EIIVNTQG 354

Query: 498 RVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSEVYKVNFH 557
           +   P     +    WD+       KP   G ++  G     GY+      +  +  +  
Sbjct: 355 KPMSPYDESRV----WDDHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408

Query: 558 C 558
            
Sbjct: 409 Y 409

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	576
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=9.3e-59  Score=510.85  Aligned_cols=412  Identities=17%  Similarity=0.188  Sum_probs=323.9

Q ss_pred             CHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEc
Q 008134           83 TMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAILA  162 (576)
Q Consensus        83 tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~  162 (576)
                      -...+++++++.+||++|+++..          +.       .++.+++||+||.++++++|++|+++|+++||+|++++
T Consensus        73 ~~~n~ldrh~~~~~d~~Ali~~~----------~~-------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~  135 (643)
T d1pg4a_          73 LAANCLDRHLQENGDRTAIIWEG----------DD-------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYM  135 (643)
T ss_dssp             HHHHHTGGGHHHHTTSEEEEEEC----------SS-------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEe----------cC-------CCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEec
Confidence            34678889999999999999842          11       23456899999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhh---------hHHHHhh--hcCCCccEEEE
Q 008134          163 ETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQL---------KKLSAVS--SSLKTIKNVIY  231 (576)
Q Consensus       163 ~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~l~~~~--~~~~~~~~vv~  231 (576)
                      +|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...         ..+....  ...+.+.+++.
T Consensus       136 ~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~  215 (643)
T d1pg4a_         136 PMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIV  215 (643)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEE
T ss_pred             ccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEE
Confidence            999999999999999999999999999999999999999999999976421         2222222  23456777877


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHH-HHHhh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAA-AIKTL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~  310 (576)
                      ++......     ... ......+.+.... ......+....++++++|+|||||||.||||+++|++++.... .....
T Consensus       216 ~~~~~~~~-----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~  288 (643)
T d1pg4a_         216 LKRTGSDI-----DWQ-EGRDLWWRDLIEK-ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV  288 (643)
T ss_dssp             ECSSCCCC-----CCC-BTTEEEHHHHHTT-SCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH
T ss_pred             eccCCccc-----ccc-cccchhhhhhhcc-cCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHh
Confidence            76543221     000 1123344444433 2333344567889999999999999999999999999765544 44556


Q ss_pred             CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcc-cccccchhhccCccccceeecccEEEecHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTL-TMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVRE  388 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~-~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~  388 (576)
                      + .++++|++++.+|++|+.++.. ++.+|++|+++++.+.. ...+     +..+++.++++++|+++++|++++.|++
T Consensus       289 ~-~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~-----~~~~~~~i~~~~vt~~~~~P~~l~~l~~  362 (643)
T d1pg4a_         289 F-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPT-----PARMCQVVDKHQVNILYTAPTAIRALMA  362 (643)
T ss_dssp             T-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSS-----TTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred             h-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCC-----HHHHHHHHHHHCCcEEEehHHHHHHHHh
Confidence            6 8999999999999999999876 67889999999984322 1111     1234444999999999999999998876


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhh
Q 008134          389 GVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINIC  468 (576)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~  468 (576)
                      +.....                                             +....++||.+++||+++++++.+++.+.
T Consensus       363 ~~~~~~---------------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~  397 (643)
T d1pg4a_         363 EGDKAI---------------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKK  397 (643)
T ss_dssp             TGGGGT---------------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             Ccchhc---------------------------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHH
Confidence            422110                                             01122589999999999999999999988


Q ss_pred             h---CCceecccCcccccCCccccCCCC--CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--Ccccccc
Q 008134          469 M---GAPIGQAYGLTETCAGSTFSEWDD--PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY  541 (576)
Q Consensus       469 ~---~~~l~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~GY  541 (576)
                      +   +++++|.||+||+++.++...+..  .+.+++|+|++|++++|+| ++|+.   +++|+.|||+|+|  |+++.||
T Consensus       398 ~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~---~~~g~~Gel~v~~~~p~~~~~~  473 (643)
T d1pg4a_         398 IGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP---QEGATEGNLVITDSWPGQARTL  473 (643)
T ss_dssp             TTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB---CCSSEEEEEEECSCCTTCCCEE
T ss_pred             hCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCC---CCCCceEEEEEecCCCcccccc
Confidence            7   477999999999988776554433  3458999999999999999 66765   5689999999999  5789999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++++.+.+.+....+|  ||+|||+|++|+||.
T Consensus       474 ~~~~~~~~~~~~~~~~g--~~~TGDl~~~d~dG~  505 (643)
T d1pg4a_         474 FGDHERFEQTYFSTFKN--MYFSGDGARRDEDGY  505 (643)
T ss_dssp             TTCHHHHHHHHHSSSTT--SEEEEEEEEECTTSC
T ss_pred             cCChhhchhhhcccCCC--eEEcCCEEEECCCce
Confidence            99999999888555567  999999999999985

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-57  Score=492.27  Aligned_cols=406  Identities=20%  Similarity=0.248  Sum_probs=330.8

Q ss_pred             ccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCC
Q 008134           74 VEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHN  153 (576)
Q Consensus        74 ~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~  153 (576)
                      +....+...|++++|+++++++||++|+++.+          +         ++.+++||+||.++++++|++|.++|++
T Consensus         3 p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~----------~---------g~~~~~Ty~el~~~~~~~A~~L~~~Gv~   63 (534)
T d1v25a_           3 PSTMMDEELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVG   63 (534)
T ss_dssp             BCCBCCCCCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCHHHHHHHHHHHcCCCeEEEEec----------C---------CceEEEcHHHHHHHHHHHHHHHHHCCcC
Confidence            33445566799999999999999999998753          2         3346799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEec
Q 008134          154 VDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFE  233 (576)
Q Consensus       154 ~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~  233 (576)
                      +||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++++++++++++......+..+....+.++.++...
T Consensus        64 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (534)
T d1v25a_          64 VGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMD  143 (534)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESS
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999888888888888777755


Q ss_pred             CCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-C
Q 008134          234 NDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-P  312 (576)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~  312 (576)
                      ......            .......    ...........++++++|+|||||||.||||+++|.++++......... .
T Consensus       144 ~~~~~~------------~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~  207 (534)
T d1v25a_         144 EKAPEG------------YLAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT  207 (534)
T ss_dssp             SCCCTT------------CEEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT
T ss_pred             cccccc------------ccccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccc
Confidence            543211            1111111    1122223456788999999999999999999999999987665443332 2


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  392 (576)
                      .....|++++.+|++|.+++...+..+..|+++++..+....       ..+...+.++++|++.++|+++..+......
T Consensus       208 ~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-------~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~  280 (534)
T d1v25a_         208 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDP-------ASLVELFDGEGVTFTAGVPTVWLALADYLES  280 (534)
T ss_dssp             CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSH-------HHHHHHHHHTTCCEEEECHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhccccccceeeeecceeeeccccccc-------cccchhhhhccccccccCchhhhhhhhhhcc
Confidence            677889999999999999999888888888888874332111       1122338999999999999999988775432


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCc
Q 008134          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP  472 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~  472 (576)
                      ..                                               ...++||.+++||++++++..+++++. +.+
T Consensus       281 ~~-----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~  312 (534)
T d1v25a_         281 TG-----------------------------------------------HRLKTLRRLVVGGSAAPRSLIARFERM-GVE  312 (534)
T ss_dssp             HT-----------------------------------------------CCCSSCCEEEECSSCCCHHHHHHHHHT-TCE
T ss_pred             cc-----------------------------------------------ccccceeEEEEecCCCCHHHHHHHHHh-CCe
Confidence            11                                               122589999999999999999998854 899


Q ss_pred             eecccCcccccCCccccCCCCC-----------CCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccc
Q 008134          473 IGQAYGLTETCAGSTFSEWDDP-----------SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGY  541 (576)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~-----------~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY  541 (576)
                      +++.||+||++..++.......           ..+++|+|++|++++|+| ++++.++ ...++.|||+|+|++++.||
T Consensus       313 i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~gY  390 (534)
T d1v25a_         313 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGY  390 (534)
T ss_dssp             EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSC
T ss_pred             eeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCC-CCCCeeEEEEEcCCccccee
Confidence            9999999999988765543221           126899999999999999 6776654 44578999999999999999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |++|+.|++.|  +.+|  ||+|||+|++|+||.
T Consensus       391 ~~~~~~t~~~~--~~dg--~~~TGDlg~~~~~G~  420 (534)
T d1v25a_         391 YGNEEATRSAL--TPDG--FFRTGDIAVWDEEGY  420 (534)
T ss_dssp             BTCHHHHHTTB--CTTS--CEEEEEEEEECTTCC
T ss_pred             cCChhhhhhhc--ccCC--CCccCceeEECCCcc
Confidence            99999999999  6677  999999999999984

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-57  Score=498.85  Aligned_cols=417  Identities=14%  Similarity=0.125  Sum_probs=320.5

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLV-NFGHNVDTRAAI  160 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i  160 (576)
                      +..+.+++++|+++||++|+++..          + .      .++.+++||+||.++++++|++|+ ++|+++||+|+|
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~~----------~-~------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i  121 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFEG----------D-E------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAV  121 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEEC----------S-S------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEEe----------c-C------CCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            356889999999999999999842          1 1      244578999999999999999997 679999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchh---------hhHHHHhhhcCCCccEEEE
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQ---------LKKLSAVSSSLKTIKNVIY  231 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~l~~~~~~~~~~~~vv~  231 (576)
                      +++|++++++++|||+++|++++|+++.++++++.++++++++++++++...         ...+.........+.....
T Consensus       122 ~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
T d1ry2a_         122 YMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV  201 (640)
T ss_dssp             CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEE
T ss_pred             EeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeee
Confidence            9999999999999999999999999999999999999999999999997643         2334444444555555555


Q ss_pred             ecCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHH-hh
Q 008134          232 FENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIK-TL  310 (576)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~  310 (576)
                      ...........     ............. .........+..++++++|+|||||||.||||+++|++++....... ..
T Consensus       202 ~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~  275 (640)
T d1ry2a_         202 YRKTNNPSVAF-----HAPRDLDWATEKK-KYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT  275 (640)
T ss_dssp             ECSSCCSSCCC-----CSSSEEEHHHHHT-TSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred             ecccccccccc-----ccccccccccccc-ccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh
Confidence            44432211000     0111222222222 22233334566789999999999999999999999999887665544 45


Q ss_pred             CCCCCCCcEEEEecChHHHHHHHH-HHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHH
Q 008134          311 IPNPGRSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREG  389 (576)
Q Consensus       311 ~~~~~~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~  389 (576)
                      + .+.++|++++.+|++|+.+... ++.+|+.|+++++.+.......    +..+++.|+++++|++.++|++++.|...
T Consensus       276 ~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  350 (640)
T d1ry2a_         276 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN----YSRYWDIIDEHKVTQFYVAPTALRLLKRA  350 (640)
T ss_dssp             S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSC----TTHHHHHHHHTTCSEEEECHHHHHHHTTS
T ss_pred             c-CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCC----HHHHHHHHHHhCccEEEcChHHHHHHHhc
Confidence            5 8999999999999999999765 7788999999888433221111    12344449999999999999999887542


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhh
Q 008134          390 VVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICM  469 (576)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~  469 (576)
                      .....                                             ++...++||.+++||+++++++.++|.+.+
T Consensus       351 ~~~~~---------------------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~  385 (640)
T d1ry2a_         351 GDSYI---------------------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKI  385 (640)
T ss_dssp             CTTSS---------------------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred             ccccc---------------------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhc
Confidence            11100                                             011125899999999999999999999988


Q ss_pred             C---CceecccCcccccCCccccCCCC---CCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc--Ccccccc
Q 008134          470 G---APIGQAYGLTETCAGSTFSEWDD---PSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG--FNVTAGY  541 (576)
Q Consensus       470 ~---~~l~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G--~~v~~GY  541 (576)
                      |   +.+++.||+||++..........   .+.+++|+|++|++++|+|++++...  .+.+..|||+++|  |+++.||
T Consensus       386 g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~--~~~~~~Gel~i~~~~p~~~~gy  463 (640)
T d1ry2a_         386 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL--NTSHAEGVLAVKAAWPSFARTI  463 (640)
T ss_dssp             SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCE--ECSSCEEEEEESSCCTTSCCEE
T ss_pred             CCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCccc--CCCCceEEEEEEecCCCccccc
Confidence            5   56999999999988766544432   34589999999999999995554432  3456679999998  6899999


Q ss_pred             cCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          542 FNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       542 ~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+|++.|.++|..+.+|  ||+|||+|++|+||.
T Consensus       464 ~~~~e~t~~~~~~~~~g--w~~TGDlg~~d~dG~  495 (640)
T d1ry2a_         464 WKNHDRYLDTYLNPYPG--YYFTGDGAAKDKDGY  495 (640)
T ss_dssp             TTCHHHHHHHHTSSSTT--SEEEEEEEEECTTCC
T ss_pred             ccCHHHHHhhhccCCCC--eEEcCCceeECCCCC
Confidence            99999999999666677  999999999999984

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=7.8e-57  Score=486.74  Aligned_cols=402  Identities=23%  Similarity=0.289  Sum_probs=323.9

Q ss_pred             ccCCCCCCHHHHHHHHHHhC---CCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCC
Q 008134           76 VPWKGASTMAALFEQSCKSH---PQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH  152 (576)
Q Consensus        76 ~~~~~~~tl~~~~~~~a~~~---Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv  152 (576)
                      .|++. .|++++|.++++++   |+++|+.+.                     ...+++||+||.++++++|++|+++|+
T Consensus        12 ~p~~~-~t~~~~l~~~~~~~~~~P~~~a~~d~---------------------~~~~~lTy~el~~~~~~lA~~L~~~Gi   69 (541)
T d1lcia_          12 YPLED-GTAGEQLHKAMKRYALVPGTIAFTDA---------------------HIEVNITYAEYFEMSVRLAEAMKRYGL   69 (541)
T ss_dssp             SCCCS-SCHHHHHHHHHHHHHTSTTCEEEEET---------------------TTCCEEEHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCC-CCHHHHHHHHHHhhCCCCCeEEEEeC---------------------CCCeEeeHHHHHHHHHHHHHHHHHcCc
Confidence            34443 69999999999998   444555431                     112479999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEe
Q 008134          153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYF  232 (576)
Q Consensus       153 ~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~  232 (576)
                      ++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|++++++++|++.+..+.+.++...++..+.++++
T Consensus        70 ~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  149 (541)
T d1lcia_          70 NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM  149 (541)
T ss_dssp             CTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEET
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999988889999999887


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCC------CCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHH
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGK------RSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAA  306 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~  306 (576)
                      +......           ...++.+......      ....+.....++++++|+|||||||.||||+++|++++.....
T Consensus       150 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~  218 (541)
T d1lcia_         150 DSKTDYQ-----------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH  218 (541)
T ss_dssp             TCSSCBT-----------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred             cCCcccc-----------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhh
Confidence            7653321           1223333322111      1122234456789999999999999999999999999988777


Q ss_pred             HHhhC--CCCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEEC---CcccccccchhhccCccccceeecccEEEecHH
Q 008134          307 IKTLI--PNPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYG---STLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPA  381 (576)
Q Consensus       307 ~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~  381 (576)
                      ....+  ..+.+++++++.+|++|..++...+..+..|+.++..   +.......           +..+++|.++++|.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p~  287 (541)
T d1lcia_         219 ARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPT  287 (541)
T ss_dssp             HTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEECCHH
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccccccccchhHHH-----------HhhhhccccccCcc
Confidence            65543  2577899999999999999999888888888888873   33333333           88899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH
Q 008134          382 IFDRVREGVVKKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADS  461 (576)
Q Consensus       382 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~  461 (576)
                      ++..+.......                                               ....++||.+++||+++++..
T Consensus       288 ~~~~~~~~~~~~-----------------------------------------------~~~~~~l~~v~~gG~~~~~~~  320 (541)
T d1lcia_         288 LFSFFAKSTLID-----------------------------------------------KYDLSNLHEIASGGAPLSKEV  320 (541)
T ss_dssp             HHHHHHHCSCGG-----------------------------------------------GSCCTTCCEEECTTCCCCHHH
T ss_pred             cccccccccccc-----------------------------------------------ccccccceEEEeccccccccc
Confidence            998876532110                                               111258999999999999999


Q ss_pred             HHHHHhhhCC-ceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCccccc
Q 008134          462 QRFINICMGA-PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAG  540 (576)
Q Consensus       462 ~~~~~~~~~~-~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~G  540 (576)
                      .+++.+.++. .+++.||+||+++.++.........+++|+|+||++++|+|+|++..   ++.|++|||+|+|++++.|
T Consensus       321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~---~~~g~~Gel~v~g~~~~~g  397 (541)
T d1lcia_         321 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKT---LGVNQRGELCVRGPMIMSG  397 (541)
T ss_dssp             HHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCB---CCTTCCEEEEEESTTSCSE
T ss_pred             ccccccccCCceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcC---CCCCCeEEEEEccCccCCe
Confidence            9999988864 68999999999998888877777779999999999999999777765   5689999999999999999


Q ss_pred             ccCCcccchhhhcccccccceeeeCCeecccCccC
Q 008134          541 YFNNPGKTSEVYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       541 Y~~~~~~t~~~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      |+++++.+...|  +.+|  ||+|||+|++|+||.
T Consensus       398 Y~~~~~~~~~~~--~~~~--~~~TGDl~~~~~~G~  428 (541)
T d1lcia_         398 YVNNPEATNALI--DKDG--WLHSGDIAYWDEDEH  428 (541)
T ss_dssp             ETTBHHHHHHHB--CTTS--CEEEEEEEEECTTCC
T ss_pred             eCCChhhhhhcc--cCCc--cccCCCeeEEcCCeE
Confidence            999999998888  4566  999999999999984

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.7e-54  Score=463.96  Aligned_cols=388  Identities=18%  Similarity=0.181  Sum_probs=314.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCC
Q 008134           73 LVEVPWKGASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGH  152 (576)
Q Consensus        73 ~~~~~~~~~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv  152 (576)
                      ....++|...||+++|+++|+++||++|+++            +++           ++||+||.++++++|++|+++|+
T Consensus        14 ~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv   70 (514)
T d1amua_          14 NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGI   70 (514)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHHcCc
Confidence            4778889999999999999999999999997            444           79999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEe
Q 008134          153 NVDTRAAILAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYF  232 (576)
Q Consensus       153 ~~gd~V~i~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~  232 (576)
                      ++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.....    .......
T Consensus        71 ~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~----~~~~~~~  146 (514)
T d1amua_          71 GKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF----NGQVEIF  146 (514)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC----CSEEEEC
T ss_pred             CCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc----ccccccc
Confidence            999999999999999999999999999999999999999999999999999999999887665443211    1111111


Q ss_pred             cCCCCCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCC
Q 008134          233 ENDGSEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIP  312 (576)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  312 (576)
                      ..                       .............+..++++++|+|||||||.||+|+++|.++..........+ 
T Consensus       147 ~~-----------------------~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-  202 (514)
T d1amua_         147 EE-----------------------DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-  202 (514)
T ss_dssp             CC-----------------------STTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-
T ss_pred             cc-----------------------ccccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-
Confidence            11                       001111222223456789999999999999999999999999999999999988 


Q ss_pred             CCCCCcEEEEecChHHHHHHHHHHHHHHhCceEEECCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHHH
Q 008134          313 NPGRSDVYLAYLPLAHVLELAAESIMLCAGCAIGYGSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVVK  392 (576)
Q Consensus       313 ~~~~~d~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~  392 (576)
                      ....+|++++.+|++|..++..++.++..|+++++..+....+..     ..+..+..+.++.+..+|........    
T Consensus       203 ~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----  273 (514)
T d1amua_         203 NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFV-----KFEQYINQKEITVITLPPTYVVHLDP----  273 (514)
T ss_dssp             CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHH-----HHHHHHHHTTCCEEEECHHHHTTSCT----
T ss_pred             cccccccccceeccccccccccccccccccccccccccccccchh-----hhhhhhhhhhcccccceeeecccccc----
Confidence            999999999999999999999999999999999985554443331     12233777889999999876543210    


Q ss_pred             HHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCCc
Q 008134          393 KVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGAP  472 (576)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~~  472 (576)
                                                                       ....++|.+++||+++++++.+++..  ++.
T Consensus       274 -------------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~  302 (514)
T d1amua_         274 -------------------------------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVT  302 (514)
T ss_dssp             -------------------------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSE
T ss_pred             -------------------------------------------------cccccccEEEEecccCCHHHhhhhcc--cee
Confidence                                                             11258999999999999999888766  578


Q ss_pred             eecccCcccccCCccccCCCCC---CCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccch
Q 008134          473 IGQAYGLTETCAGSTFSEWDDP---SVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTS  549 (576)
Q Consensus       473 l~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~  549 (576)
                      +++.||+||++.+++.......   ...+.|++.++..+.+.| ++++.   +++|+.|||+|+||.++.||+++++.+.
T Consensus       303 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~---~~~g~~GEl~v~~~~~~~gY~~~~~~~~  378 (514)
T d1amua_         303 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQL---KSVGEAGELCIGGEGLARGYWKRPELTS  378 (514)
T ss_dssp             EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCB---CCTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred             EEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-cccee---cCCCCeeEEEEccCcccccccccccccc
Confidence            9999999999988766554433   336888999999999999 66665   5689999999999999999999999999


Q ss_pred             hhhcccc--cccceeeeCCeecccCccC
Q 008134          550 EVYKVNF--HCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       550 ~~f~~~~--~g~~~~~TGDlg~~d~d~e  575 (576)
                      +.|..++  +|++||+|||+|++|+||.
T Consensus       379 ~~~~~~~~~~~~~~~~TGD~g~~d~~G~  406 (514)
T d1amua_         379 QKFVDNPFVPGEKLYKTGDQARWLSDGN  406 (514)
T ss_dssp             HHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred             eeeEeccccCCCceEEECCEEEECCCCc
Confidence            9995543  4456999999999999984

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.3e-51  Score=438.19  Aligned_cols=387  Identities=20%  Similarity=0.202  Sum_probs=307.6

Q ss_pred             CCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q 008134           82 STMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAIL  161 (576)
Q Consensus        82 ~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~  161 (576)
                      .|++++|+++|+++||++|+++            ++           +++||+||.++++++|++|+++|+++||+|+++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~   81 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQ   81 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHCCCCeEEEE------------CC-----------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEE
Confidence            6999999999999999999986            22           379999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhh-----HHHHhhhcCCCccEEEEecCCC
Q 008134          162 AETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLK-----KLSAVSSSLKTIKNVIYFENDG  236 (576)
Q Consensus       162 ~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~l~~~~~~~~~~~~vv~~~~~~  236 (576)
                      ++|++++++++|||+++|+++||++|.++.+++.++|++++++++++++....     .........+.+...+......
T Consensus        82 ~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (536)
T d1mdba_          82 LPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE  161 (536)
T ss_dssp             CCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT
T ss_pred             eCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc
Confidence            99999999999999999999999999999999999999999999999764432     1122223333443333322211


Q ss_pred             CCCCCCCCCCCCCceEeehHHHHHcCCCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhCCCCCC
Q 008134          237 SEKDSGVSGGISNWTVSSFSEVEKLGKRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLIPNPGR  316 (576)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~  316 (576)
                      .              ...++++    ...+....+..++|+++|+|||||||.||||++||+++...+......+ .+.+
T Consensus       162 ~--------------~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~  222 (536)
T d1mdba_         162 E--------------FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH  222 (536)
T ss_dssp             T--------------SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred             c--------------ccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-cccc
Confidence            1              1122221    1223334567889999999999999999999999999999999998888 9999


Q ss_pred             CcEEEEecChHHHHHHHH-HH-HHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          317 SDVYLAYLPLAHVLELAA-ES-IMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       317 ~d~~l~~~pl~~~~~~~~-~~-~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      +|++++..|++|.+++.. .+ ..+..|.+++.   .++..+...           +.+++++.+..+|..+..+.....
T Consensus       223 ~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  291 (536)
T d1mdba_         223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS  291 (536)
T ss_dssp             TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred             ccccccccccccccceeeccccccccccccccccCCCCHHHHHHH-----------Hhhhccccccccchhhhhhhhhcc
Confidence            999999999999999865 33 33444566665   333444444           899999999999999988766432


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ...                                               ...+++|.+++||+++++.+.+++...++.
T Consensus       292 ~~~-----------------------------------------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~  324 (536)
T d1mdba_         292 SRR-----------------------------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGC  324 (536)
T ss_dssp             HCC-----------------------------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred             ccc-----------------------------------------------cccCcceeEEEeccccccccccchhhccCc
Confidence            211                                               112589999999999999999999999999


Q ss_pred             ceecccCcccccCCccccCCC-CCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEccCcccccccCCcccchh
Q 008134          472 PIGQAYGLTETCAGSTFSEWD-DPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGGFNVTAGYFNNPGKTSE  550 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G~~v~~GY~~~~~~t~~  550 (576)
                      ..+..||.+|.+......... ....+++|+|+++....+++.++++.   +++++.|||+|+|+.+++||+++++.+..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~---~~~~~~Gel~v~g~~~~~gY~~~~~~~~~  401 (536)
T d1mdba_         325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD---VKPGETGHLLTRGPYTIRGYYKAEEHNAA  401 (536)
T ss_dssp             EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCB---CCTTCCEEEEEECTTSCSSCTTCHHHHHH
T ss_pred             eeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCe---ecccccceeecCCCccccccccccccccc
Confidence            999999999977655443322 22337899998766655555477665   56899999999999999999999999988


Q ss_pred             hhcccccccceeeeCCeecccCccC
Q 008134          551 VYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       551 ~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .+  ..+|  ||+|||+|++|+||.
T Consensus       402 ~~--~~~~--~~~tGD~~~~~~dG~  422 (536)
T d1mdba_         402 SF--TEDG--FYRTGDIVRLTRDGY  422 (536)
T ss_dssp             HB--CTTS--CEEEEEEEEECTTSC
T ss_pred             cc--cccC--ccccCccccccCCCc
Confidence            88  5667  999999999999985

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=2.8e-47  Score=406.57  Aligned_cols=384  Identities=18%  Similarity=0.179  Sum_probs=301.0

Q ss_pred             CCCHHHHHHHHHHhCCCCcceeEeeeccccccccCCCcceeeecCCCceEeeHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q 008134           81 ASTMAALFEQSCKSHPQDRFLGKRKLLGKDFVTASDGRKFEKLHLGDYEWQTYGEVFDRACSFASGLVNFGHNVDTRAAI  160 (576)
Q Consensus        81 ~~tl~~~~~~~a~~~Pd~~Al~~~~~~~~~~~~~~dg~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~V~i  160 (576)
                      ++|++++|+++|+++||++|+++.+          ++           +++||+||.++++++|++|+++|+++||+|++
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i   59 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV   59 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEECC----------CC-----------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEE
Confidence            4799999999999999999998742          23           47999999999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHhccCceEEEECchhhhHHHHhhhcCCCccEEEEecCCCCCCC
Q 008134          161 LAETCVEWFIAFQGCFRQSITVVTIYSSLGEDALIHSLNETQVTTLICDSKQLKKLSAVSSSLKTIKNVIYFENDGSEKD  240 (576)
Q Consensus       161 ~~~~s~~~~va~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~l~~~~~~~~~~~~vv~~~~~~~~~~  240 (576)
                      +++|++++++++|||+++|++++||+|.++++++.+++++++++++|++...... ......... ..            
T Consensus        60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~------------  125 (503)
T d3cw9a1          60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQSGSG-AR------------  125 (503)
T ss_dssp             ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHTTCC-CE------------
T ss_pred             EeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhhccc-cc------------
Confidence            9999999999999999999999999999999999999999999999998764321 222222221 22            


Q ss_pred             CCCCCCCCCceEeehHHHHHcC----CCCCCCCCCCCCCCeEEEEeecCCCCCCceEEechHHHHHHHHHHHhhC-CCCC
Q 008134          241 SGVSGGISNWTVSSFSEVEKLG----KRSPVDPSLPSQNGVAVIMYTSGSTGLPKGVMITHGNIVATAAAIKTLI-PNPG  315 (576)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~  315 (576)
                                 ++.+.++....    ...+.......++++++|+|||||||.||+|+++|+++...+......+ ....
T Consensus       126 -----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~  194 (503)
T d3cw9a1         126 -----------IIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHG  194 (503)
T ss_dssp             -----------EEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSS
T ss_pred             -----------cccchhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhcccccccccc
Confidence                       23333332221    1122233556789999999999999999999999999999998887765 2445


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHhCceEEE---CCcccccccchhhccCccccceeecccEEEecHHHHHHHHHHHH
Q 008134          316 RSDVYLAYLPLAHVLELAA-ESIMLCAGCAIGY---GSTLTMTDTSSKIKKGTKGDVSVLKPTLMAAVPAIFDRVREGVV  391 (576)
Q Consensus       316 ~~d~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~  391 (576)
                      ..++++..+|+.|..+... .+.+...++.+++   .++......           +..++++++..+|+.+..+.....
T Consensus       195 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~  263 (503)
T d3cw9a1         195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAAAA  263 (503)
T ss_dssp             TTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHHHH
T ss_pred             ccccccccCccccccccccccccccccccccccccccChHHhhhh-----------hhhceeeccccccccccccccccc
Confidence            6689999999998888775 5566677777777   333334434           889999999999999888765432


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHhhhhCCccccCchhhhhHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHhhhCC
Q 008134          392 KKVEEKGGLTKNLFNIGYKRRLAAVEGSWFGAWGLERMLWDAIVFKSVRAVLGGRIRFMICGGAPLSADSQRFINICMGA  471 (576)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~Lr~v~~gG~~l~~~~~~~~~~~~~~  471 (576)
                      ....                                             +...++||.+++||++++++...++...++.
T Consensus       264 ~~~~---------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~  298 (503)
T d3cw9a1         264 HAGS---------------------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPG  298 (503)
T ss_dssp             HTCT---------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCS
T ss_pred             cccc---------------------------------------------cccccceEEEEeccccccccccccccccccc
Confidence            2111                                             1122589999999999999999999999999


Q ss_pred             ceecccCcccccCCccccCCCCCCCCccCCCCCCcEEEEeecCCCCCcCCCCCCCCceEEEcc-CcccccccCCcccchh
Q 008134          472 PIGQAYGLTETCAGSTFSEWDDPSVGRVGPPVPCCYIKLVSWDEGGYKTSDKPMPRGEIVVGG-FNVTAGYFNNPGKTSE  550 (576)
Q Consensus       472 ~l~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~ivd~~~~~~~~~~~~g~~GEl~v~G-~~v~~GY~~~~~~t~~  550 (576)
                      .+.+.||.||++..+...........+.+.+.+.....+.+ +.++.   ++.|+.|++++.+ .....||+++++.|++
T Consensus       299 ~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~  374 (503)
T d3cw9a1         299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEI---VANGEEGELIVAASDSAFVGYLNQPQATAE  374 (503)
T ss_dssp             EEEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCB---CCTTCCEEEEEECCTTSCCCBTTCHHHHHH
T ss_pred             cccccccccccceeeeeccccccccccccccccceeeeeec-ccCcc---cCCCccccccccccccccccccCChhhhHH
Confidence            99999999999888776665555555566665555555544 44443   5689999876665 5667789999999999


Q ss_pred             hhcccccccceeeeCCeecccCccC
Q 008134          551 VYKVNFHCVWMLCICLYVSCDKTLE  575 (576)
Q Consensus       551 ~f~~~~~g~~~~~TGDlg~~d~d~e  575 (576)
                      .|   .+|  ||+|||+|++|+||.
T Consensus       375 ~~---~~g--~~~TgD~g~~~~dG~  394 (503)
T d3cw9a1         375 KL---QDG--WYRTSDVAVWTPEGT  394 (503)
T ss_dssp             HE---ETT--EEEEEEEEEECTTSC
T ss_pred             Hh---cCC--ceecccccccccCCe
Confidence            88   577  999999999999984