Citrus Sinensis ID: 008143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
Protein Sequence
MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYRRVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSSNANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHcccccccEEEEEccccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEcEEEEcccEEEEEccccccccccccccccEccccccccccEEEEcccccccccccccEEEEEEEEEcccccccccccccccccccccccHHcccccccccHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEcccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccHHHHHHHHHHHcccHccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccEEccc
Coil and Loop (DISEMBL)
MGTLASCIFSFscvnvrgrlhsvplhneRVQVFKIksskkkkkkgsfscclqskggvsyrrvslrtfdsfrcfcsannssnnseknednasndssvattssaldeteeksssssssssssnaneftsdktptsassppptmspvgsahnnfqidsfklmellgpekvdpadvKLIKenlfgystfwvtkeepfgdlgeGILFLGNLRGKREDVYAKLQSRLVEITgdkynffmveepnsegpdprggprvsfgllrkevsepgptTLWQYVIAFLLFLLTIGSSVELGIAsqinrlppeivkyftdpnaidppnvellypfveSALPLAYGVLGVLLFHDVGHFLAAFpkkvklsipffipnitlgsfgaitqfksilpdrstkvdislagpiagAALSFSMFVVGLLLssnpdaagdlvqvpstlFQGSLLLGLISRATLGYTAMHASTVTIHPLViagwcgltttafnmlpvgcldggravqgafgrnaligfgLTTYTMLGlgvlggplslpwgLYVIICqrtpekpclndvtevgtWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Flexible Loop (DISEMBL)
MGTLASCIFSFSCVNVRGRlhsvplhnervqvfkiksskkkkkkgsfscclqskggvsyrrVSLRTFDSFRCFCSannssnnseknednasndSSVATTSsaldeteeksssssssssssnanEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEepnsegpdprggPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Low Complexity Region (SEG)
MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFkiksskkkkkkgsfsCCLQSKGGVSYRRVSLRTFDSFRCFCsannssnnseknednasndssVATTSSALDETEEKsssssssssssNANEFtsdktptsassppptmspVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMlglgvlggplslpwglYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Disordered region (IsUnstruct)
************************************************CCLQSKGGVSYRRVSLRTFDSFRCFCS***************************************************************************FQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMV****************************GPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVT**
Disordered Region (DISOPRED)
********FSFSCVNVRGRLHSVPLH************************************************************************************************************************************************DVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPR******************WQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTT*
Disordered Region (DISEMBL)
MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKI*************CCLQSKGGVSYRRVSLRTFDSFRCFCSAN*****************************************************************PVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEP*********GPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Disordered Region (DISPRO)
*GTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGG*SYRRVSLRTFDSFRCFC*********************************************************************************FKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYRRVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSSNANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	576	2.2.26 [Sep-21-2011]
Q10411	1957	Sporulation-specific prot	yes	no	0.328	0.096	0.265	0.0002

>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 26/215 (12%)

Query: 16  VRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYRRVSLRTFDSFRCFCS 75
           VR +L ++  H   +   ++ SS KK K  S    L S+  VSY +  L           
Sbjct: 142 VRSKLAALE-HENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKL----------- 189

Query: 76  ANNSSNNSEKNEDNASNDSSVATTSSALDETE---EKSSSSSSSSSSSNANEFTSDKTPT 132
            N  SN S K  +       + T +  LD+ E   EK     SS  +S A E  S+K+  
Sbjct: 190 TNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLR 249

Query: 133 SAS--------SPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKE---NLFG 181
                      S   T+S +    N+ + +   L E L    ++  D KL++E   N+  
Sbjct: 250 GEQERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVAN 309

Query: 182 YSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAK 216
           YS   V K++   DL   I    NL+ +R+ +  K
Sbjct: 310 YSDAIVHKDKLIEDLSTRISEFDNLKSERDTLSIK 344

Has a role in the initiation of spore membrane formation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
224125958	562	predicted protein [Populus trichocarpa]	0.963	0.987	0.747	0.0
312281651	570	unnamed protein product [Thellungiella h	0.970	0.980	0.713	0.0
449462753	560	PREDICTED: uncharacterized protein LOC10	0.970	0.998	0.748	0.0
15238440	548	Peptidase M50 family protein [Arabidopsi	0.951	1.0	0.727	0.0
297805082	550	ethylene-dependent gravitropism-deficien	0.951	0.996	0.726	0.0
225439191	546	PREDICTED: uncharacterized protein LOC10	0.940	0.992	0.744	0.0
255569456	562	sterol regulatory element-binding protei	0.970	0.994	0.742	0.0
356560825	556	PREDICTED: uncharacterized protein LOC10	0.963	0.998	0.722	0.0
356571767	563	PREDICTED: uncharacterized protein LOC10	0.977	1.0	0.718	0.0
8978356	531	unnamed protein product [Arabidopsis tha	0.921	1.0	0.703	0.0

>gi|224125958|ref|XP_002319720.1| predicted protein [Populus trichocarpa] gi|222858096|gb|EEE95643.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/583 (74%), Positives = 478/583 (81%), Gaps = 28/583 (4%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL S   SFS VN++         +  V+ F+ ++  KK KK S + C   KGG+  R
Sbjct: 1   MGTLTSS--SFSTVNLK------LCSDLIVKDFRDRTQLKKWKKQS-ALCFSYKGGILKR 51

Query: 61  RVSLRTFDSFRCFC-------SANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSS 113
            V    F   RCF          ++S  +   N  ++ N    +   +AL E +E+ SS+
Sbjct: 52  EVC--NFSKIRCFSVNNNNNNDHHDSEKDVVDNGSDSENGDKYSNVKAALSEEKEERSST 109

Query: 114 SSSSSSSNANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVK 173
                     EF SDK   S SS PPT+SPVG A+NNFQ+DSFKLMELLGPEKVDPADVK
Sbjct: 110 ----------EFGSDKAQASVSSRPPTISPVGPAYNNFQVDSFKLMELLGPEKVDPADVK 159

Query: 174 LIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFM 233
           LIK+ LFGYSTFWVTKEEPFGDLGEGILFLGNLRG REDV+AKL SRL E TGDKYN FM
Sbjct: 160 LIKDKLFGYSTFWVTKEEPFGDLGEGILFLGNLRGNREDVFAKLLSRLAEATGDKYNLFM 219

Query: 234 VEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQI 293
           VEEPNS+ PDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIA LLFLLT GSSVELGIASQI
Sbjct: 220 VEEPNSDAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTTGSSVELGIASQI 279

Query: 294 NRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVK 353
           NRLPPE+VKYFTDPNA++PP++ELL+PFV+SALPLAYGVLG+LLFH+VGHFL AFPKKVK
Sbjct: 280 NRLPPEVVKYFTDPNAVEPPDMELLFPFVDSALPLAYGVLGILLFHEVGHFLVAFPKKVK 339

Query: 354 LSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNP 413
           LSIPF IPNITLGSFGAITQFKSI+PDRSTKVDISLAGP AGAALSFSMF VGLLLSSNP
Sbjct: 340 LSIPFCIPNITLGSFGAITQFKSIIPDRSTKVDISLAGPFAGAALSFSMFAVGLLLSSNP 399

Query: 414 DAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLP 473
            AAGDLVQVPS LFQGSLLLGLISRA LGY A+HASTV+IHPLVIAGWCGLTTTAFNMLP
Sbjct: 400 AAAGDLVQVPSMLFQGSLLLGLISRAILGYAALHASTVSIHPLVIAGWCGLTTTAFNMLP 459

Query: 474 VGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLN 533
           VGCLDGGRAVQGAFG+ ALIGFGLTTYT+LGLGVLGGPLSLPWG+YV+ICQR PEKPCLN
Sbjct: 460 VGCLDGGRAVQGAFGKGALIGFGLTTYTLLGLGVLGGPLSLPWGIYVLICQRAPEKPCLN 519

Query: 534 DVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           DVTEVGTWRKA VT AIFLV  TLLPVWDELAEELGIGLV+TF
Sbjct: 520 DVTEVGTWRKAAVTAAIFLVALTLLPVWDELAEELGIGLVSTF 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281651|dbj|BAJ33691.1| unnamed protein product [Thellungiella halophila]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/587 (71%), Positives = 479/587 (81%), Gaps = 28/587 (4%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL S  F+ + VN+R R     L  E ++    K +   + +  FSC           
Sbjct: 1   MGTLTSVAFA-AAVNIRFRSFHCNLR-ESIKTPMPKVTTSSRDRHYFSCT---------- 48

Query: 61  RVSLRTFDSFRCF-CSANNSSNNSEKNEDNA----SNDSSVATTS------SALDETEEK 109
               + + +FR   C  N+ + N + N+ +A    + DS++ T S         +E EE+
Sbjct: 49  ----KDYHTFRAVNCLGNDQTGNRDGNDGDANSSVARDSALKTASLEEEEEEEEEEEEEE 104

Query: 110 SSSSSSSSSSSNANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDP 169
              +   S+SS++NEF SDKTP   SS   T SP+   +++FQIDSFKLMELLGPE+VDP
Sbjct: 105 EEEADKRSNSSSSNEFGSDKTPF-VSSRRSTESPIDPIYSSFQIDSFKLMELLGPERVDP 163

Query: 170 ADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKY 229
           ADVKLIK+N+FGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDV+AKLQ +L E+ GDKY
Sbjct: 164 ADVKLIKDNIFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVFAKLQRKLTELAGDKY 223

Query: 230 NFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGI 289
           N FM+EEPNSEGPDPRGG RVSFGLLRKEVSEPGPTTLWQYVIA +LFLLTIGSSVELGI
Sbjct: 224 NLFMIEEPNSEGPDPRGGARVSFGLLRKEVSEPGPTTLWQYVIALILFLLTIGSSVELGI 283

Query: 290 ASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFP 349
           ASQINRLPPE+VKYFTDPNA++PP++ELLYPFV+SALPLAYGVLG+LLFH++GHFLAA P
Sbjct: 284 ASQINRLPPEVVKYFTDPNAVEPPDMELLYPFVDSALPLAYGVLGILLFHELGHFLAAVP 343

Query: 350 KKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLL 409
           KKVKLSIP+FIPNITLGSFGAITQFKSILPDRSTKVDISLAGP AGAALS SMF VGL L
Sbjct: 344 KKVKLSIPYFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFL 403

Query: 410 SSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAF 469
           S++PDAA DLVQVPS LFQGSLLLGLISRATLGY AMHA+TV+IHPLVIAGWCGLTTTAF
Sbjct: 404 STSPDAASDLVQVPSMLFQGSLLLGLISRATLGYAAMHAATVSIHPLVIAGWCGLTTTAF 463

Query: 470 NMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEK 529
           NMLP+GCLDGGRAVQGAFG+NAL+ FGL+TY MLGL VLGGPL+LPWGLYV+ICQRTPEK
Sbjct: 464 NMLPIGCLDGGRAVQGAFGKNALVTFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEK 523

Query: 530 PCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           PCLNDVTEVGTWRKA+V  AI LV+ TLLPVWDELAEE+GIGLV TF
Sbjct: 524 PCLNDVTEVGTWRKALVATAIILVVLTLLPVWDELAEEVGIGLVNTF 570

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462753|ref|XP_004149105.1| PREDICTED: uncharacterized protein LOC101218567 [Cucumis sativus] gi|449525488|ref|XP_004169749.1| PREDICTED: uncharacterized LOC101218567 [Cucumis sativus]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/577 (74%), Positives = 477/577 (82%), Gaps = 18/577 (3%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL SC F+F   N   R             F      K+ +   F C  +SK      
Sbjct: 1   MGTLTSCSFTFGAANFNFRSSFGSCSTREGMGFL---GFKRLRSSCFLCGKRSK--RERL 55

Query: 61  RVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
            VS   F  F CF S +N  ++    ED+   +S+ AT + + DE EE+  S        
Sbjct: 56  LVSNGDFGRFMCF-SLDNEGHSEGDREDDLPKESNAATVTVSTDEVEERRGS-------- 106

Query: 121 NANEFTSDK-TPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENL 179
              E  S+K TP S SS  P +SP+G A+NNFQ+DSFKLMELLGPEKVDP+DVKLIK+ L
Sbjct: 107 ---EVDSEKMTPPSISSRSPNLSPIGPAYNNFQVDSFKLMELLGPEKVDPSDVKLIKDKL 163

Query: 180 FGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNS 239
           FGYSTFWVTKEE FGDLGEGILFLGNLRGKRE+V++KLQS LVE+TGDKYN FMVEEPNS
Sbjct: 164 FGYSTFWVTKEEAFGDLGEGILFLGNLRGKREEVFSKLQSHLVEVTGDKYNLFMVEEPNS 223

Query: 240 EGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPE 299
           EGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIA LLFLLTIGSSVELGIASQINRLPPE
Sbjct: 224 EGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQINRLPPE 283

Query: 300 IVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFF 359
           +VKYFTDPNA++PP++ELL+PFV+SALPLAYGVLGVLLFH+VGHFLAAFPKKVKLSIP+F
Sbjct: 284 VVKYFTDPNAVEPPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLAAFPKKVKLSIPYF 343

Query: 360 IPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDL 419
           IPNITLGSFGAITQFKSILPDRST+VDISLAGP AGAALSFSMF VGLLLSSN DA+GDL
Sbjct: 344 IPNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAALSFSMFAVGLLLSSNSDASGDL 403

Query: 420 VQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDG 479
           VQVPS LFQGSLLLGLISRATLGY AMHASTV IHPLVIAGWCGLTTTAFNMLPVGCLDG
Sbjct: 404 VQVPSMLFQGSLLLGLISRATLGYAAMHASTVAIHPLVIAGWCGLTTTAFNMLPVGCLDG 463

Query: 480 GRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVG 539
           GRA+QGAFG+ AL+GFGL TYT+LGLGVLGGPLSLPWGLYV+ICQR+PEKPCLNDVTEVG
Sbjct: 464 GRAIQGAFGKGALVGFGLATYTLLGLGVLGGPLSLPWGLYVLICQRSPEKPCLNDVTEVG 523

Query: 540 TWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           TWRKA VT+A+FLV+ TLLPVWDELAEELG+GLVTTF
Sbjct: 524 TWRKAAVTLAVFLVVLTLLPVWDELAEELGMGLVTTF 560

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238440|ref|NP_198372.1| Peptidase M50 family protein [Arabidopsis thaliana] gi|15292751|gb|AAK92744.1| unknown protein [Arabidopsis thaliana] gi|25055031|gb|AAN71977.1| unknown protein [Arabidopsis thaliana] gi|332006564|gb|AED93947.1| Peptidase M50 family protein [Arabidopsis thaliana]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/576 (72%), Positives = 476/576 (82%), Gaps = 28/576 (4%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL S  F+ + VN+R R      H E ++   I +  K +K+  FS    S       
Sbjct: 1   MGTLTSVAFA-AAVNIRFR----SFHRENIKT-TITTLPKWQKRLCFSSTEDS------- 47

Query: 61  RVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
                 F   +C  +  NS+ +    E+  ++ SSV  T++  +E EE S SSS++SS  
Sbjct: 48  ----HRFRIAKCLGNDENSNRDDSIGENGETHKSSVVKTATFEEEDEETSKSSSTTSS-- 101

Query: 121 NANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLF 180
            +NEF SDKT     S P T+ P    +++FQIDSFKLMELLGPEKVDPADVKLIK+ LF
Sbjct: 102 -SNEFGSDKT-----SMPSTIDP---TYSSFQIDSFKLMELLGPEKVDPADVKLIKDKLF 152

Query: 181 GYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSE 240
           GYSTFWVTKEEPFGDLGEGILFLGNLRGK+EDV+AKLQ +LVE+  DKYN FM+EEPNSE
Sbjct: 153 GYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKLVEVASDKYNLFMIEEPNSE 212

Query: 241 GPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEI 300
           GPDPRGG RVSFGLLRKEVSEPGPTTLWQYVIA +LFLLTIGSSVELGIASQINRLPPE+
Sbjct: 213 GPDPRGGARVSFGLLRKEVSEPGPTTLWQYVIALILFLLTIGSSVELGIASQINRLPPEV 272

Query: 301 VKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFI 360
           VKYFTDPNA++PP++ELLYPFV++ALPLAYGVLG+LLFH++GHFLAA PKKVKLSIP+FI
Sbjct: 273 VKYFTDPNAVEPPDMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFI 332

Query: 361 PNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLV 420
           PNITLGSFGAITQFKSILPDRSTKVDISLAGP AGAALS SMF VGL LS+ PDAA DLV
Sbjct: 333 PNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLV 392

Query: 421 QVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGG 480
           QVPS LFQGSLLLGLISRATLGY A+HA+TV+IHPLVIAGWCGLTTTAFNMLPVGCLDGG
Sbjct: 393 QVPSMLFQGSLLLGLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGG 452

Query: 481 RAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGT 540
           RAVQGAFG+NAL+ FGL+TY MLGL VLGGPL+LPWGLYV+ICQRTPEKPCLNDVTEVGT
Sbjct: 453 RAVQGAFGKNALVTFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTEVGT 512

Query: 541 WRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           WRKA+V +A+ LV+ TLLPVWDELAEE+GIGLVTTF
Sbjct: 513 WRKALVGIALILVVLTLLPVWDELAEEVGIGLVTTF 548

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805082|ref|XP_002870425.1| ethylene-dependent gravitropism-deficient and yellow-green 1 [Arabidopsis lyrata subsp. lyrata] gi|297316261|gb|EFH46684.1| ethylene-dependent gravitropism-deficient and yellow-green 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/578 (72%), Positives = 479/578 (82%), Gaps = 30/578 (5%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL S  F+ + VN+R R      H E +   K  +   K +K  F    +     S+R
Sbjct: 1   MGTLTSVAFA-AAVNIRFR----SFHRENI---KTATKLPKWQKRIFFSSTED----SHR 48

Query: 61  RVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
                 F   +C  +  NS+ ++   ++  ++ SSV  T+S     EE   +S+SSS++S
Sbjct: 49  ------FRIAKCLGTDENSNRDNSVGDNGETHKSSVVKTAS---REEEDDETSNSSSTTS 99

Query: 121 NANEFTSDKT--PTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKEN 178
           ++NEF SDKT  P+S SS  PT       +++FQIDSFKLMELLGPEKVDPADVKLIK+ 
Sbjct: 100 SSNEFGSDKTSMPSSDSSVDPT-------YSSFQIDSFKLMELLGPEKVDPADVKLIKDK 152

Query: 179 LFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPN 238
           LFGYSTFWVTKEEPFGDLGEGILFLGNLRGK+EDV+AKLQ +LVE+ GDKYN FM+EEPN
Sbjct: 153 LFGYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKLVEVAGDKYNLFMIEEPN 212

Query: 239 SEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPP 298
           SEGPDPRGG RVSFGLLRKEVSEPGPTTLWQYVIA +LFLLTIGSSVELGIASQINRLPP
Sbjct: 213 SEGPDPRGGARVSFGLLRKEVSEPGPTTLWQYVIALILFLLTIGSSVELGIASQINRLPP 272

Query: 299 EIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPF 358
           E+VKYFTDPNA++PP++ELLYPFV++ALPLAYGVLG+LLFH++GHFLAA PKKVKLSIP+
Sbjct: 273 EVVKYFTDPNAVEPPDMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPY 332

Query: 359 FIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGD 418
           FIPNITLGSFGAITQFKSILPDRSTKVDISLAGP AGAALS SMF VGL LS+ PDAA D
Sbjct: 333 FIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTAPDAAND 392

Query: 419 LVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLD 478
           LVQVPS LFQGSLLLGLISRATLGY A+HA+TV+IHPLVIAGWCGLTTTAFNMLPVGCLD
Sbjct: 393 LVQVPSMLFQGSLLLGLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLD 452

Query: 479 GGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEV 538
           GGRAVQGAFG+NAL+ FGL+TY MLGL VLGGPL+LPWGLY++ICQRTPEKPCLNDVTEV
Sbjct: 453 GGRAVQGAFGKNALVTFGLSTYVMLGLRVLGGPLALPWGLYLLICQRTPEKPCLNDVTEV 512

Query: 539 GTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           GTWRKA+V  AI LV+ TLLPVWDELAEE+GIGLVTTF
Sbjct: 513 GTWRKALVGTAIILVILTLLPVWDELAEEVGIGLVTTF 550

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439191|ref|XP_002269447.1| PREDICTED: uncharacterized protein LOC100253507 [Vitis vinifera] gi|296085892|emb|CBI31216.3| unnamed protein product [Vitis vinifera]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/580 (74%), Positives = 481/580 (82%), Gaps = 38/580 (6%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHN---ERVQVFKIKSSKKKKKKGSFSCCLQSKGGV 57
           MGTL SC FS +    R R    P+ N   +R+ +F I S     K   F C        
Sbjct: 1   MGTLTSCSFSTATFRFRSR----PVGNDFRQRIHLFNITS-----KNLCFLC-------- 43

Query: 58  SYRRVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSS 117
           S ++VS  +F  FRCF S N + + +E  E +   DS+ + T++  +E EE         
Sbjct: 44  SKKQVSSGSFGRFRCF-STNGNGDKNEGEESSLVKDSN-SKTATMPEEAEE--------- 92

Query: 118 SSSNANEFTSDKTPTS-ASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIK 176
                 E  SDK P +  SS PP++SP+G  +NNFQ+DSFKLMELLGPEKVDPADVKLIK
Sbjct: 93  ------ELDSDKDPPAPVSSRPPSISPIGPGYNNFQVDSFKLMELLGPEKVDPADVKLIK 146

Query: 177 ENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEE 236
           + LFGYSTFWVTKEEPFGDLGEGILFLGNLRGKRE+++AKLQS+L EI GDKYN FMVEE
Sbjct: 147 DKLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREEIFAKLQSQLTEIMGDKYNLFMVEE 206

Query: 237 PNSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRL 296
           PNS+G DPRGGPRVSFG+LRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRL
Sbjct: 207 PNSDGLDPRGGPRVSFGMLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRL 266

Query: 297 PPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSI 356
           PP++VKYFTDP+AI+PP++ LL+PFVESALPLAYGVLGV LFH+VGHFLAAFPKKVKLSI
Sbjct: 267 PPDVVKYFTDPDAIEPPDMGLLFPFVESALPLAYGVLGVQLFHEVGHFLAAFPKKVKLSI 326

Query: 357 PFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAA 416
           P+FIPNITLGSFGAITQFKSILPDR TKVDISLAGP AGAALS +MF VGLLLSSNPDAA
Sbjct: 327 PYFIPNITLGSFGAITQFKSILPDRRTKVDISLAGPFAGAALSCAMFSVGLLLSSNPDAA 386

Query: 417 GDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGC 476
           GDLVQVPS LFQGSLLLGLISRATLGY AMHA+TV IHPLVIAGWCGLTT+AFNMLPVGC
Sbjct: 387 GDLVQVPSMLFQGSLLLGLISRATLGYAAMHAATVPIHPLVIAGWCGLTTSAFNMLPVGC 446

Query: 477 LDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVT 536
           LDGGRAVQGAFG+ AL GFGLTTYT+LGLGVLGGPLSLPWGLYV+ICQR+PEKPCLNDVT
Sbjct: 447 LDGGRAVQGAFGKGALSGFGLTTYTLLGLGVLGGPLSLPWGLYVLICQRSPEKPCLNDVT 506

Query: 537 EVGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           EVGTWRK ++TVAIFLV+ TLLPVWDELAEELGIGLVTTF
Sbjct: 507 EVGTWRKTVLTVAIFLVVLTLLPVWDELAEELGIGLVTTF 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569456|ref|XP_002525695.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis] gi|223534995|gb|EEF36678.1| sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/579 (74%), Positives = 480/579 (82%), Gaps = 20/579 (3%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLH-NERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSY 59
           MGTL SC  SFS VN+R R   +  +  +R   F + + KKK     F  C     G+S 
Sbjct: 1   MGTLTSC--SFSTVNLRVRSGLIANNLRDRFPAFHLGNKKKK-----FFFCR----GISK 49

Query: 60  RRVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSS 119
           R V     +  RCF      S ++  N ++ + +      ++  +E E     SS  + S
Sbjct: 50  REVFSSNLNIIRCF------STSNNNNHNDTNKNLDNNNNNANANENENGVQDSSVKTVS 103

Query: 120 SNANEFTSDKTPTSA--SSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKE 177
              N+  +D  PTS+  S+PPPT+SPVG A+NNFQ+DSFKLMELLGPEKVDP DVKLIK+
Sbjct: 104 LQDNDDPADNPPTSSVSSTPPPTISPVGPAYNNFQVDSFKLMELLGPEKVDPTDVKLIKD 163

Query: 178 NLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEP 237
            LFGYSTFWVTKEEPFGD GEGILFLGNLRGKREDV++KLQ++LVE+TGDKYN FMVEEP
Sbjct: 164 KLFGYSTFWVTKEEPFGDFGEGILFLGNLRGKREDVFSKLQNQLVEVTGDKYNLFMVEEP 223

Query: 238 NSEGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLP 297
           NS+GPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIA LLFLLTIGSSVELGIASQINRLP
Sbjct: 224 NSDGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQINRLP 283

Query: 298 PEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIP 357
           PE+VKYFTDPNA DPP++ELL+PFV+SALPLAYG+LG+LLFH+VGHFLAAFP+KVKLSIP
Sbjct: 284 PEVVKYFTDPNATDPPDMELLFPFVDSALPLAYGILGILLFHEVGHFLAAFPRKVKLSIP 343

Query: 358 FFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAG 417
           FFIPNITLGSFGAITQFKSILPDRSTKVDISLAGP AGAALSFSMF VGLLLSSNP AAG
Sbjct: 344 FFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSFSMFAVGLLLSSNPTAAG 403

Query: 418 DLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCL 477
           +LVQVPS LFQGSLLLGLISRA LGY A+HA+TV+IHPLVIAGWCGLTTTA NMLPVGCL
Sbjct: 404 ELVQVPSMLFQGSLLLGLISRAVLGYAALHAATVSIHPLVIAGWCGLTTTALNMLPVGCL 463

Query: 478 DGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTE 537
           DGGRAVQGAFG+ AL GFGLTTYT+LGLGVLGGPLSLPWGLYV+ICQR PEKPCLNDVTE
Sbjct: 464 DGGRAVQGAFGKGALTGFGLTTYTLLGLGVLGGPLSLPWGLYVLICQRAPEKPCLNDVTE 523

Query: 538 VGTWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           VGTWR+A V  AIFLV+ TLLPV DELAEELGIGLVTTF
Sbjct: 524 VGTWRQAAVVTAIFLVVLTLLPVGDELAEELGIGLVTTF 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560825|ref|XP_003548687.1| PREDICTED: uncharacterized protein LOC100782345 [Glycine max]

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/577 (72%), Positives = 478/577 (82%), Gaps = 22/577 (3%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGV-SY 59
           MGTL SC F             +PL++E  + F+ +    K  +   + C  S+  V  +
Sbjct: 1   MGTLTSCSF-------------MPLNSEFRRAFRERIQCHKLTRLRGTSCFFSRARVPKW 47

Query: 60  RRVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSS 119
            +  L  FDS R F + N+   NS+ ++DN SN    A   S  D+    S S+ +++ +
Sbjct: 48  GKSKLPNFDSLRSFATKND---NSDGDKDN-SNHVGAAGEESGGDD----SKSNVTTTMA 99

Query: 120 SNANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENL 179
                FTS+K+   ++S   ++S +G A+N FQ+DSFKL+ELLGPEKVDPADVKLIK+ L
Sbjct: 100 EEERGFTSEKSTPPSTSHRSSLSSLGPAYNTFQVDSFKLIELLGPEKVDPADVKLIKDKL 159

Query: 180 FGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNS 239
           FGYSTFWVTKEEPFGDLGEGILF+GNLRGKREDV+AKLQ++LVE+TGDKYN FMVEEPN+
Sbjct: 160 FGYSTFWVTKEEPFGDLGEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMVEEPNA 219

Query: 240 EGPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPE 299
           + PDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIA LLFLLTIGSSVELGIASQINRLPPE
Sbjct: 220 DSPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQINRLPPE 279

Query: 300 IVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFF 359
           +VKYFTDP+A++ P++ELL+PFV+SALPLAYGVLGVLLFH+VGHFLAAFPK+VKLSIPFF
Sbjct: 280 VVKYFTDPDAVEAPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLAAFPKQVKLSIPFF 339

Query: 360 IPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDL 419
           IPNITLGSFGAITQFKSILPDRST+VDISLAGP AGA LSFSMF VGLLLSSNPD  GDL
Sbjct: 340 IPNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDTTGDL 399

Query: 420 VQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDG 479
           VQVPS LFQGSLLLGLISRATLGY AMHA+TV IHPLVIAGWCGLT  AFNMLPVGCLDG
Sbjct: 400 VQVPSLLFQGSLLLGLISRATLGYAAMHAATVPIHPLVIAGWCGLTIQAFNMLPVGCLDG 459

Query: 480 GRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVG 539
           GRAVQGAFG+NAL+GFGLTTYT+LGLGVLGGPLSLPWGLYV++CQR PEKPCLNDVTEVG
Sbjct: 460 GRAVQGAFGKNALVGFGLTTYTLLGLGVLGGPLSLPWGLYVLLCQRAPEKPCLNDVTEVG 519

Query: 540 TWRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           TWRKA+V +AIFLV+ TL+PV DELAEELGIGLVT F
Sbjct: 520 TWRKALVAIAIFLVVLTLVPVGDELAEELGIGLVTAF 556

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571767|ref|XP_003554044.1| PREDICTED: uncharacterized protein LOC100808073 [Glycine max]

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/576 (71%), Positives = 473/576 (82%), Gaps = 13/576 (2%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL SC  SF  +N   R + V     R    +I+  K  + +G+ SC         + 
Sbjct: 1   MGTLTSC--SFMPLNSEFRSNPV----RRAFRERIQCHKLTRLRGASSCFFSRARVPKWG 54

Query: 61  RVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
           +  L  FDS RCF + N+++++        SN+   A   S  D+    S S+ +++   
Sbjct: 55  KSKLSNFDSLRCFATNNDNNSDDGDK---DSNNVGAAGEESGGDD----SKSNVTTTMPE 107

Query: 121 NANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLF 180
               FTS K+   ++S   ++S +G A+N FQ+DSFKL+ELLGPEKVDPADVKLIK+ LF
Sbjct: 108 EERGFTSQKSTPPSTSQRSSLSSLGPAYNTFQVDSFKLIELLGPEKVDPADVKLIKDKLF 167

Query: 181 GYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSE 240
           GYSTFWVTKEEPFGDLGEGILF+GNLRGKREDV+AKLQ++LVE+TGDKYN FMVEEPN++
Sbjct: 168 GYSTFWVTKEEPFGDLGEGILFIGNLRGKREDVFAKLQNQLVEVTGDKYNLFMVEEPNAD 227

Query: 241 GPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEI 300
            PDPRGGPRVSFGLLRKEVSEPGP TLWQYVIA LLFLLTIGSSVELGIASQINRLPPE+
Sbjct: 228 SPDPRGGPRVSFGLLRKEVSEPGPMTLWQYVIALLLFLLTIGSSVELGIASQINRLPPEV 287

Query: 301 VKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFI 360
           VKYFTDP+A++ P++ELL+PFV+SALPLAYGVLGVLLFH+VGHFL+AFPK+VKLSIPFFI
Sbjct: 288 VKYFTDPDAVEAPDMELLFPFVDSALPLAYGVLGVLLFHEVGHFLSAFPKQVKLSIPFFI 347

Query: 361 PNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLV 420
           PNITLGSFGAITQFKSILPDRST+VDISLAGP AGA LSFSMF VGLLLSSNPD  GDLV
Sbjct: 348 PNITLGSFGAITQFKSILPDRSTQVDISLAGPFAGAVLSFSMFAVGLLLSSNPDITGDLV 407

Query: 421 QVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGG 480
           QVPS LFQGSLLLGLISRATLGY AMHA TV IHPLVIAGWCGLT  AFNMLPVGCLDGG
Sbjct: 408 QVPSLLFQGSLLLGLISRATLGYAAMHAETVPIHPLVIAGWCGLTIQAFNMLPVGCLDGG 467

Query: 481 RAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGT 540
           RAVQGAFG+NAL+GFGLTTYT+LGLGVLGGPLSLPWGLYV++CQR PEKPCLNDVTEVGT
Sbjct: 468 RAVQGAFGKNALVGFGLTTYTLLGLGVLGGPLSLPWGLYVLLCQRAPEKPCLNDVTEVGT 527

Query: 541 WRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           WRKA+V +AIFLV+ TL+PV DELAEELGIGLVT F
Sbjct: 528 WRKALVAIAIFLVVLTLVPVGDELAEELGIGLVTAF 563

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8978356|dbj|BAA98209.1| unnamed protein product [Arabidopsis thaliana]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/576 (70%), Positives = 459/576 (79%), Gaps = 45/576 (7%)

Query: 1   MGTLASCIFSFSCVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGGVSYR 60
           MGTL S  F+ + VN+R R      H E ++   I +  K +K+  FS    S       
Sbjct: 1   MGTLTSVAFA-AAVNIRFR----SFHRENIKT-TITTLPKWQKRLCFSSTEDS------- 47

Query: 61  RVSLRTFDSFRCFCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
                 F   +C  +  NS+ +    E+  ++ SSV  T++  +E EE S SSS++SS  
Sbjct: 48  ----HRFRIAKCLGNDENSNRDDSIGENGETHKSSVVKTATFEEEDEETSKSSSTTSS-- 101

Query: 121 NANEFTSDKTPTSASSPPPTMSPVGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLF 180
            +NEF SDKT     S P T+ P    +++FQIDSFKLMELLGPEKVDPADVKLIK+ LF
Sbjct: 102 -SNEFGSDKT-----SMPSTIDP---TYSSFQIDSFKLMELLGPEKVDPADVKLIKDKLF 152

Query: 181 GYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSE 240
           GYSTFWVTKEEPFGDLGEGILFLGNLRGK+EDV+AKLQ +LVE+  DKYN FM+EEPNSE
Sbjct: 153 GYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKLVEVASDKYNLFMIEEPNSE 212

Query: 241 GPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEI 300
           GPDPRGG RVSFGLLRKEVSEPGPTTLWQYVIA +LFLLTIGSSVELGIASQINRLPPE+
Sbjct: 213 GPDPRGGARVSFGLLRKEVSEPGPTTLWQYVIALILFLLTIGSSVELGIASQINRLPPEV 272

Query: 301 VKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFI 360
           VKYFTDPNA++PP++ELLYPFV++ALPLAYGVLG+LLFH++GHFLAA PKKVKLSIP+FI
Sbjct: 273 VKYFTDPNAVEPPDMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFI 332

Query: 361 PNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLV 420
           PNITLGSFGAITQFKSILPDRSTKVDISLAGP AGAALS SMF VGL LS+ PDAA DLV
Sbjct: 333 PNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLV 392

Query: 421 QVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGG 480
           QVPS LFQGSLLLGLISRATLGY                  CGLTTTAFNMLPVGCLDGG
Sbjct: 393 QVPSMLFQGSLLLGLISRATLGYA-----------------CGLTTTAFNMLPVGCLDGG 435

Query: 481 RAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVIICQRTPEKPCLNDVTEVGT 540
           RAVQGAFG+NAL+ FGL+TY MLGL VLGGPL+LPWGLYV+ICQRTPEKPCLNDVTEVGT
Sbjct: 436 RAVQGAFGKNALVTFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTEVGT 495

Query: 541 WRKAIVTVAIFLVLFTLLPVWDELAEELGIGLVTTF 576
           WRKA+V +A+ LV+ TLLPVWDELAEE+GIGLVTTF
Sbjct: 496 WRKALVGIALILVVLTLLPVWDELAEEVGIGLVTTF 531

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	576
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.751	0.790	0.826	9e-196
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.414	0.429	0.317	3.2e-38
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.664	0.668	0.261	8.5e-21

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1896 (672.5 bits), Expect = 9.0e-196, P = 9.0e-196
 Identities = 358/433 (82%), Positives = 393/433 (90%)

Query:   144 VGSAHNNFQIDSFKLMELLGPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFL 203
             +   +++FQIDSFKLMELLGPEKVDPADVKLIK+ LFGYSTFWVTKEEPFGDLGEGILFL
Sbjct:   116 IDPTYSSFQIDSFKLMELLGPEKVDPADVKLIKDKLFGYSTFWVTKEEPFGDLGEGILFL 175

Query:   204 GNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDPRGGPRVSFGLLRKEVSEPG 263
             GNLRGK+EDV+AKLQ +LVE+  DKYN FM+EEPNSEGPDPRGG RVSFGLLRKEVSEPG
Sbjct:   176 GNLRGKKEDVFAKLQRKLVEVASDKYNLFMIEEPNSEGPDPRGGARVSFGLLRKEVSEPG 235

Query:   264 PTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVE 323
             PTTLWQYVIA +LFLLTIGSSVELGIASQINRLPPE+VKYFTDPNA++PP++ELLYPFV+
Sbjct:   236 PTTLWQYVIALILFLLTIGSSVELGIASQINRLPPEVVKYFTDPNAVEPPDMELLYPFVD 295

Query:   324 SALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRST 383
             +ALPLAYGVLG+LLFH++GHFLAA PKKVKLSIP+FIPNITLGSFGAITQFKSILPDRST
Sbjct:   296 AALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQFKSILPDRST 355

Query:   384 KVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGY 443
             KVDISLAGP AGAALS SMF VGL LS+ PDAA DLVQVPS LFQGSLLLGLISRATLGY
Sbjct:   356 KVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLLGLISRATLGY 415

Query:   444 TAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMX 503
              A+HA+TV+IHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFG+NAL+ FGL+TY M 
Sbjct:   416 AALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALVTFGLSTYVML 475

Query:   504 XXXXXXXXXXXXXXXYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLVLFTLLPVWDE 563
                            YV+ICQRTPEKPCLNDVTEVGTWRKA+V +A+ LV+ TLLPVWDE
Sbjct:   476 GLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTEVGTWRKALVGIALILVVLTLLPVWDE 535

Query:   564 LAEELGIGLVTTF 576
             LAEE+GIGLVTTF
Sbjct:   536 LAEEVGIGLVTTF 548

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
 Identities = 78/246 (31%), Positives = 123/246 (50%)

Query:   314 NVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQ 373
             N+ELL   +  AL  A  VLGV   H++GH L A    +KL +PFF+P+  +GSFGAIT+
Sbjct:   303 NLELLKDGLPGALVTAL-VLGV---HELGHILVANSLGIKLGVPFFVPSWQIGSFGAITR 358

Query:   374 FKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLL 433
              K+I+  R   + ++ AGP+AG +L   +F++GL +   P + G  V V +++F  S L 
Sbjct:   359 IKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFV---PPSDGIGVVVDASVFHESFLA 415

Query:   434 GLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALI 493
             G I++  LG      ++++++PLVI  W GL     N +P G LDGG+     +GR    
Sbjct:   416 GGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSIWGRKTAT 475

Query:   494 GFGLTTYTMXXXXXXXXXXXXXXXXYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAIFLV 553
                  +  +                 +   QR P  P   ++T       ++  + +FL 
Sbjct:   476 RLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLGILVLFLS 535

Query:   554 LFTLLP 559
             L   LP
Sbjct:   536 LLVCLP 541

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 8.5e-21, P = 8.5e-21
 Identities = 112/429 (26%), Positives = 177/429 (41%)

Query:   148 HNNFQIDSF-KLMELL--GPEKVDPADVKLIKENLFGYSTFWVTKEEPFGDLGEGILFLG 204
             +N+   DS  K  E L    E     D+  +K + FG+ TF+ T    FGD G   +F+G
Sbjct:   153 YNSLARDSLTKEKERLEKAEETFKALDLNKLK-SCFGFDTFFATDVRRFGDGG---IFIG 208

Query:   205 NLRGKREDVYAKLQSRLVEITG-DKYNFFMVEEPNSEGPDP-RGGPRVSFGLLRKEVSEP 262
             NLR   ++V  KL+++L E  G D   +FM E  N          P+    L   +    
Sbjct:   209 NLRKPIDEVTPKLEAKLSEAAGRDVVVWFMEERSNEITKQVCMVQPKAEIDL---QFEST 265

Query:   263 GPTTLWQYVIAFLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFV 322
               +T W YV A  L + T G+   + + S           +F  P+A           ++
Sbjct:   266 RLSTPWGYVSAIALCVTTFGT---IALMSG----------FFLKPDAT-------FDDYI 305

Query:   323 ESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRS 382
              + +PL  G L +L   ++   + A    VKLS  F +P+   G  G +  ++S+LP++ 
Sbjct:   306 ANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKK 365

Query:   383 TKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGD-LVQVPSTLFQGSLLLGLISRATL 441
                DI +A   A A L+  +      +S      GD  + +    F  + LL  +     
Sbjct:   366 ALFDIPVART-ASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQFFDNNPLLSFVQFVVG 424

Query:   442 GYT---------AMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRN-- 490
              Y          A+    V + PL  AG  G+  T+ N+LP G L+GGR  Q  FGR+  
Sbjct:   425 PYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRSTA 484

Query:   491 ALIGFGLTTYTMXXXXXXXXXXXXXXXXYVIICQRTPEKPCLNDVTEVGTWRKAIVTVAI 550
             A++ F  T+  +                +    +   E P  +++T VG  R A   V  
Sbjct:   485 AILSF-TTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEITPVGDDRFAWGIVLG 543

Query:   551 FLVLFTLLP 559
              +   TL P
Sbjct:   544 LICFLTLFP 552


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.141   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      576       495   0.00083  119 3  11 22  0.50    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  268 KB (2142 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.27u 0.11s 38.38t   Elapsed:  00:00:02
  Total cpu time:  38.27u 0.11s 38.38t   Elapsed:  00:00:02
  Start:  Tue May 21 06:36:13 2013   End:  Tue May 21 06:36:15 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XIII000305	hypothetical protein (562 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.3493.1	hypothetical protein (374 aa)			•						0.433
	estExt_fgenesh4_pg.C_LG_IX1048	hypothetical protein (220 aa)			•						0.424
	estExt_fgenesh4_pg.C_1660047	hypothetical protein (329 aa)			•						0.421
	gw1.I.1529.1	hypothetical protein (221 aa)			•						0.419
	estExt_fgenesh4_pg.C_LG_II2395	SubName- Full=Putative uncharacterized protein; (210 aa)			•						0.412
	eugene3.00090150	hypothetical protein (129 aa)			•	•					0.409
	gw1.VII.1585.1	hypothetical protein (204 aa)			•	•					0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	576
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	9e-48
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	2e-17
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	7e-14
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	2e-09
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	2e-08
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	8e-08

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  164 bits (417), Expect = 9e-48
 Identities = 73/251 (29%), Positives = 106/251 (42%), Gaps = 70/251 (27%)

Query: 274 FLLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVL 333
            LL +LT+ +++ +G     N                   +V      +   LP A  +L
Sbjct: 1   LLLLVLTLLTTLLVGAWLSGN-------------------DVPGNPLLLLQGLPFALALL 41

Query: 334 GVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPI 393
            +L  H++GH+LAA    VK S+P+FIP   +G+FGA  + +S +P+R    DI+LAGP+
Sbjct: 42  AILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPL 101

Query: 394 AGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTI 453
           AG  L+  + ++GL                                              
Sbjct: 102 AGLLLALPVLIIGL---------------------------------------------- 115

Query: 454 HPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGPLS 513
               +AGW GL  TA N+LPVG LDGG  V+  FGR      G+     LGL  L    S
Sbjct: 116 ---AVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFS 172

Query: 514 --LPWGLYVII 522
             L W L ++I
Sbjct: 173 IWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 28/214 (13%)

Query: 327 PLAYGVLGVLLFHDVGHFLAA-----------------FPKKVKLSIPFFIPNITLGSFG 369
                +L  ++ H++GH L A                   K +  +  + I  +   +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 370 AITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQG 429
           A  + +        ++ ISLAGP+A   L+  +F + LLL   P        V       
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPGIPVPPVIGGVVV----GS 116

Query: 430 SLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFG- 488
           S L G ++ A +G T+  A +  +  L       L    FN+LP+  LDGG  ++     
Sbjct: 117 SKLSGPVAIAKVGSTS--ALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAV 174

Query: 489 RNALIGFGLTTYTMLGLGVLGGPLSLPWGLYVII 522
           R   +      Y  L     G  L L   L ++ 
Sbjct: 175 RGRPLNERAENYIYLV----GLALLLLLILLLLF 204

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 41/206 (19%), Positives = 61/206 (29%), Gaps = 56/206 (27%)

Query: 326 LPLAYGVLGVLLFHDVGHFLAA-----------------FPKKVKLSIPFFIPNITLGSF 368
           L     +L  +  H++GH L A                   K         IP       
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIP------L 54

Query: 369 GAITQFKSILPDRSTK-----VDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVP 423
           G   +     P    K     + ++LAGP+A   L+  + ++ LLL   P A        
Sbjct: 55  GGYAKPVGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPA-------- 106

Query: 424 STLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAV 483
                                   AS+   + L       L    FN+LP+  LDGGR +
Sbjct: 107 -------------------PVGQAASSGLANLLAFLALINLNLAVFNLLPIPPLDGGRIL 147

Query: 484 QGAFG-RNALIGFGLTTYTMLGLGVL 508
           +         +   L  Y    L  L
Sbjct: 148 RALLEAIRGRVEERLEAYGFAILLGL 173

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 50/211 (23%)

Query: 317 LLYPFVESALPLAYGVLGVLLF-----HDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAI 371
           LL P V     L   +  +LLF     H++GH L A     +  I   + +ITL  FG +
Sbjct: 17  LLGPGVGPVAWLLGLLEALLLFLSVLLHELGHALVA----RRYGIR--VRSITLLPFGGV 70

Query: 372 TQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSL 431
            + +        +  I+LAGP+    L+   +++ LLL      +  L      L Q +L
Sbjct: 71  AELEEEPETPKEEFVIALAGPLVSLLLAGLFYLLYLLLPGGGPLSSLL----EFLAQVNL 126

Query: 432 LLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNA 491
           +LGL                                 FN+LP   LDGGR ++    R  
Sbjct: 127 ILGL---------------------------------FNLLPALPLDGGRVLRALLWR-- 151

Query: 492 LIGFGLTTYTMLGLGVLGGPLSLPWGLYVII 522
             G+   T     +G L   L +  GL+++ 
Sbjct: 152 RTGYRRATRIAARIGQLFAILLVVLGLFLLF 182

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 62/225 (27%)

Query: 318 LYPFVESALPLAYGVLG----VLLF-----HDVGHFLAAFPKKVKLSIPFFIPNITLGSF 368
           ++P V  AL     +LG    +LLF     H++GH L A    +       + +ITL  F
Sbjct: 29  VFPAVPPALGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLF 82

Query: 369 GAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQ 428
           G + + +        +  I++AGP+    L+    ++ L L  +             L  
Sbjct: 83  GGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLLLSLALPGSGAG------PLGVLLG 136

Query: 429 GSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFG 488
               L LI+                  L++A         FN+LP   LDGGR ++    
Sbjct: 137 Y---LALIN------------------LLLA--------VFNLLPAFPLDGGRVLRALLW 167

Query: 489 RN-----------ALIGFGLTTYTMLGLGVLGGPLSLPWGLYVII 522
           R            A +G G     ++ LG+L   L+L  GL++I+
Sbjct: 168 RRTGDYLKATRIAAWVGRGF-AVLLIILGLLSLFLNLLGGLWLIL 211

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 16/171 (9%)

Query: 325 ALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPN-----ITLGSFGAITQFKSILP 379
                   + V+      H +AA   K     P  IP      I     GAI    +  P
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPLKPGDKIVAVDVGAIGLSPNGEP 235

Query: 380 D-RSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISR 438
           D     V       +  A       +V L L         L ++ +       L G I  
Sbjct: 236 DVGKVLVKYGPLEAVGLAVEKT-GRLVKLTLKM-------LKKLITGDLSLKNLSGPIGI 287

Query: 439 ATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGR 489
           A +   A  AS   I+ L       +     N+LP+  LDGG  +      
Sbjct: 288 AKIAGAA--ASLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEA 336

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	576
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	100.0
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.89
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.86
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.8
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.75
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.7
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.68
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.61
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.49
COG0750	375	Predicted membrane-associated Zn-dependent proteas	99.22
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.15
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.08
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.52
PF13398	200	Peptidase_M50B: Peptidase M50B-like	96.69
PRK10779	449	zinc metallopeptidase RseP; Provisional	96.59
COG0750	375	Predicted membrane-associated Zn-dependent proteas	94.55
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	93.79

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=100.00  E-value=7.9e-32  Score=259.28  Aligned_cols=178  Identities=40%  Similarity=0.715  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCCCCCcccchhHHHHhhHHHHHHHHHHHhhhHHHHHHHHhhCCccc
Q 008143          275 LLFLLTIGSSVELGIASQINRLPPEIVKYFTDPNAIDPPNVELLYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKL  354 (576)
Q Consensus       275 ~LfllTl~TTl~aGa~~~~~~l~~e~~~~~~~p~~~~p~~~~~l~~~l~~glPfal~ll~IL~vHElGHylaArr~gVk~  354 (576)
                      +++++|++|..++|+..+.++++          +     ++    ..+..+++++++++.++.+||+||+++||++|+|+
T Consensus         2 ~~~~~s~~~~~~~~~~~~~~~~~----------~-----~~----~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~   62 (183)
T cd06160           2 LLLVLTLLTTLLVGAWLSGNDVP----------G-----NP----LLLLQGLPFALALLAILGIHEMGHYLAARRHGVKA   62 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhccccc----------c-----cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence            57899999999999876544332          1     11    22568999999999999999999999999999999


Q ss_pred             ccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCccccchhhHHH
Q 008143          355 SIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLG  434 (576)
Q Consensus       355 slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg  434 (576)
                      +.|+++|++.+|++|+++++++..++|+++++|++|||++|+++++++++++                            
T Consensus        63 ~~~~l~P~~~~G~~G~~~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~----------------------------  114 (183)
T cd06160          63 SLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG----------------------------  114 (183)
T ss_pred             cceeeeehHhcCcEEEEEEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH----------------------------
Confidence            9999999988999999999999999999999999999999999998775542                            


Q ss_pred             HHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh--h
Q 008143          435 LISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGLTTYTMLGLGVLGGP--L  512 (576)
Q Consensus       435 ~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrIl~Al~Grr~~~~~g~~t~lll~Lg~l~~~--l  512 (576)
                                           +..++|+|++++++||+|++|||||||+|+++++|.+..+++.+...+++..+.++  .
T Consensus       115 ---------------------~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (183)
T cd06160         115 ---------------------LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSI  173 (183)
T ss_pred             ---------------------HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                                 12468999999999999999999999999999999888888877655555544444  5


Q ss_pred             HHHHHHHH
Q 008143          513 SLPWGLYV  520 (576)
Q Consensus       513 ~l~W~l~v  520 (576)
                      |++|..++
T Consensus       174 ~l~~~~~~  181 (183)
T cd06160         174 WLLWALLL  181 (183)
T ss_pred             HHHHHHHH
Confidence            56665543

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.89  E-value=3.1e-22  Score=198.29  Aligned_cols=129  Identities=22%  Similarity=0.305  Sum_probs=107.5

Q ss_pred             HHhhHHHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHH
Q 008143          322 VESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFS  401 (576)
Q Consensus       322 l~~glPfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~  401 (576)
                      +..|+.++++++.++++||+||+++||++|+|+....+.|+      |+++++++.++++++++.|++|||+++++++++
T Consensus        42 ~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~------Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~i  115 (227)
T cd06164          42 WLLGLAAALLLFASVLLHELGHSLVARRYGIPVRSITLFLF------GGVARLEREPETPGQEFVIAIAGPLVSLVLALL  115 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeECeEEEEee------eEEEEecCCCCCHHHHhhhhhhHHHHHHHHHHH
Confidence            45789999999999999999999999999999998888775      999999999999999999999999999999988


Q ss_pred             HHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHH
Q 008143          402 MFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGR  481 (576)
Q Consensus       402 llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGr  481 (576)
                      ++++.......          +     .+.+                    ..-+.+.+|+|++++++||+|+.||||||
T Consensus       116 ~~~l~~~~~~~----------~-----~~~~--------------------~~~~~~~~~~Nl~l~~fNLlP~~PLDGgr  160 (227)
T cd06164         116 FLLLSLALPGS----------G-----AGPL--------------------GVLLGYLALINLLLAVFNLLPAFPLDGGR  160 (227)
T ss_pred             HHHHHHHhccc----------c-----chHH--------------------HHHHHHHHHHHHHHHHHhCcCCCCCChHH
Confidence            87665433210          0     0110                    01234678999999999999999999999


Q ss_pred             HHHHHhhhhH
Q 008143          482 AVQGAFGRNA  491 (576)
Q Consensus       482 Il~Al~Grr~  491 (576)
                      |+++++.++.
T Consensus       161 il~~ll~~~~  170 (227)
T cd06164         161 VLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHhc
Confidence            9999997654

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.86  E-value=1.5e-20  Score=183.47  Aligned_cols=126  Identities=25%  Similarity=0.330  Sum_probs=105.2

Q ss_pred             HhhHHHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHHH
Q 008143          323 ESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSM  402 (576)
Q Consensus       323 ~~glPfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~l  402 (576)
                      ..++.+++.++.++++||+||+++||++|+++....+.|+      |+++++++...+|++.+.|++|||++++++++.+
T Consensus        28 ~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~~i~l~p~------Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la~~~  101 (208)
T cd06161          28 LLGLLEALLLFLSVLLHELGHALVARRYGIRVRSITLLPF------GGVAELEEEPETPKEEFVIALAGPLVSLLLAGLF  101 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccceEEEee------eeeeeeccCCCChhHheeeeeehHHHHHHHHHHH
Confidence            4678899999999999999999999999999988877775      9999999888899999999999999999999887


Q ss_pred             HHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 008143          403 FVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRA  482 (576)
Q Consensus       403 livGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrI  482 (576)
                      .++....+..                 +                    .....+...+|+|++++++||+|+.|||||||
T Consensus       102 ~~l~~~~~~~-----------------~--------------------~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161         102 YLLYLLLPGG-----------------G--------------------PLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHcccc-----------------h--------------------HHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            6654322110                 0                    01123456789999999999999999999999


Q ss_pred             HHHHhhhhH
Q 008143          483 VQGAFGRNA  491 (576)
Q Consensus       483 l~Al~Grr~  491 (576)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999998763

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.80  E-value=5e-19  Score=167.16  Aligned_cols=132  Identities=28%  Similarity=0.372  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhCCccc-----------------ccceeecccccccceeEeeCCCCCCC-----hhhh
Q 008143          327 PLAYGVLGVLLFHDVGHFLAAFPKKVKL-----------------SIPFFIPNITLGSFGAITQFKSILPD-----RSTK  384 (576)
Q Consensus       327 Pfal~ll~IL~vHElGHylaArr~gVk~-----------------slPyFIP~~~lGTfGAvir~ks~~p~-----RkaL  384 (576)
                      .+.++++.++.+||+||+++||++|+++                 ...+++|+      |+++++.+..++     |++.
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~------gG~~~~~~~~~~~~~~~~~~~   75 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPL------GGYAKPVGENPRAFKKPRWQR   75 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhc------cCeeccCCCChhhhccchhhh
Confidence            3567788899999999999999999954                 45556665      889888887664     8999


Q ss_pred             hhheehhhHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHH
Q 008143          385 VDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGL  464 (576)
Q Consensus       385 FDIaiAGPLAG~vval~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL  464 (576)
                      +.|++|||+++++++++++++............          ..                 .......+.+.+.+|+++
T Consensus        76 ~~i~laGPl~nllla~i~~~~~~~~~~~~~~~~----------~~-----------------~~~~~~~~~l~~~~~~n~  128 (180)
T cd05709          76 LLVALAGPLANLLLALLLLLLLLLLGGLPPAPV----------GQ-----------------AASSGLANLLAFLALINL  128 (180)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHccCCccch----------hh-----------------hHHHHHHHHHHHHHHHHH
Confidence            999999999999999988766544432110000          00                 001122345678899999


Q ss_pred             HHHHHhhcCCCCCChHHHHHHHhhhhH
Q 008143          465 TTTAFNMLPVGCLDGGRAVQGAFGRNA  491 (576)
Q Consensus       465 ~vTaLNLLPvGqLDGGrIl~Al~Grr~  491 (576)
                      .+.++||+|+.||||||++++++.++.
T Consensus       129 ~l~~fNLlPi~plDGg~il~~~l~~~~  155 (180)
T cd05709         129 NLAVFNLLPIPPLDGGRILRALLEAIR  155 (180)
T ss_pred             HHHHHHhCCCCCCChHHHHHHHHhHHH
Confidence            999999999999999999999998764

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.75  E-value=1.8e-17  Score=159.98  Aligned_cols=106  Identities=26%  Similarity=0.369  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhCCccccc--------------------ceeecccccccceeEeeCCCCCC--------
Q 008143          328 LAYGVLGVLLFHDVGHFLAAFPKKVKLSI--------------------PFFIPNITLGSFGAITQFKSILP--------  379 (576)
Q Consensus       328 fal~ll~IL~vHElGHylaArr~gVk~sl--------------------PyFIP~~~lGTfGAvir~ks~~p--------  379 (576)
                      +.+++..++.+||+||+++||++|+|+.-                    --.+|      +|++.++++..+        
T Consensus         4 ~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iP------lGGyv~~~~~~~~~~~~~~~   77 (182)
T cd06163           4 FILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIP------LGGYVKMLGEDPEEEADPED   77 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEE------eccEEEecCCCccccccccc
Confidence            56677888999999999999999999874                    12345      499999875432        


Q ss_pred             --------ChhhhhhheehhhHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhcccccccccc
Q 008143          380 --------DRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTV  451 (576)
Q Consensus       380 --------~RkaLFDIaiAGPLAG~vval~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v  451 (576)
                              ++++.+-|++|||+++++++++++++-                                             
T Consensus        78 ~~~~f~~~~~~~ri~V~lAGP~~NlilA~i~~~~~---------------------------------------------  112 (182)
T cd06163          78 DPRSFNSKPVWQRILIVFAGPLANFLLAIVLFAVL---------------------------------------------  112 (182)
T ss_pred             chHHHccCCcchhhhhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence                    467788899999999999998664320                                             


Q ss_pred             chhHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 008143          452 TIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFG  488 (576)
Q Consensus       452 ~lhPla~aGWlGL~vTaLNLLPvGqLDGGrIl~Al~G  488 (576)
                          +.+..++|+.+..+||+|+.||||||++++++.
T Consensus       113 ----~~~~~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         113 ----LSFLALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             ----HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence                235678999999999999999999999999995

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.70  E-value=1.1e-16  Score=152.08  Aligned_cols=127  Identities=29%  Similarity=0.326  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhCCcccccceeec--ccc---------------c-------cc-----ceeEeeCCCCC
Q 008143          328 LAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIP--NIT---------------L-------GS-----FGAITQFKSIL  378 (576)
Q Consensus       328 fal~ll~IL~vHElGHylaArr~gVk~slPyFIP--~~~---------------l-------GT-----fGAvir~ks~~  378 (576)
                      +.++++.++.+||+||+++||++|+|+.....-+  .+.               +       |.     .++....+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            4567888999999999999999999998763221  110               1       11     34455555667


Q ss_pred             CChhhhhhheehhhHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHH
Q 008143          379 PDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVI  458 (576)
Q Consensus       379 p~RkaLFDIaiAGPLAG~vval~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~  458 (576)
                      .+|++.+.|++|||+++++++++.+.+........                                 .......+.+.+
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~---------------------------------~~~~~~~~~~~~  128 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSV---------------------------------GWSSFFAEFLFF  128 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS----------------------------------------EETTEEHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhccc---------------------------------cccHHHHHHHHH
Confidence            78899999999999999999988765532221100                                 011223356778


Q ss_pred             HHHHHHHHHHHhhcCCCCCChHHHHHHHh
Q 008143          459 AGWCGLTTTAFNMLPVGCLDGGRAVQGAF  487 (576)
Q Consensus       459 aGWlGL~vTaLNLLPvGqLDGGrIl~Al~  487 (576)
                      ++|+++.+.++||+|+.+|||||++++++
T Consensus       129 ~~~~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  129 FAWLNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.68  E-value=6.1e-16  Score=157.06  Aligned_cols=117  Identities=20%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCC---CChhhhhhheehhhHHHHHHHH
Q 008143          324 SALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSIL---PDRSTKVDISLAGPIAGAALSF  400 (576)
Q Consensus       324 ~glPfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~---p~RkaLFDIaiAGPLAG~vval  400 (576)
                      ..+.+.++++.++.+||+||+++||++|+++...-+.=  .+-.+||+++..+..   .+|++.+-|+.|||++++++++
T Consensus       109 ~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl~l--~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvla~  186 (263)
T cd06159         109 PLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGLLL--LIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVAL  186 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhHHH--HhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHHHH
Confidence            55667788999999999999999999999988632210  011258998887654   5688899999999999999998


Q ss_pred             HHHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChH
Q 008143          401 SMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGG  480 (576)
Q Consensus       401 ~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGG  480 (576)
                      +++++-.                                                +....|+|+.+.++||+|+.|||||
T Consensus       187 i~~~l~~------------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg  218 (263)
T cd06159         187 IAFALFF------------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGG  218 (263)
T ss_pred             HHHHHHH------------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChH
Confidence            7654310                                                2245789999999999999999999


Q ss_pred             HHHHHHhhhh
Q 008143          481 RAVQGAFGRN  490 (576)
Q Consensus       481 rIl~Al~Grr  490 (576)
                      |++++++..+
T Consensus       219 ~il~~ll~~~  228 (263)
T cd06159         219 HVFRDLLEAL  228 (263)
T ss_pred             HHHHHHHHHH
Confidence            9999999643

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.61  E-value=2e-14  Score=147.05  Aligned_cols=117  Identities=18%  Similarity=0.121  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCC---CCChhhhhhheehhhHHHHHHHHHHHH
Q 008143          328 LAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSI---LPDRSTKVDISLAGPIAGAALSFSMFV  404 (576)
Q Consensus       328 fal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~---~p~RkaLFDIaiAGPLAG~vval~lli  404 (576)
                      +.++++.++.+||+||.++||++|+++..--+.++..++  ||+++..+.   ..++++.+-|+.|||+++++++++.++
T Consensus       130 ~l~al~isvvvHElgHal~A~~~gi~V~~iGl~l~~~~p--Ga~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvLa~i~~~  207 (277)
T cd06162         130 YFTALLISGVVHEMGHGVAAVREQVRVNGFGIFFFIIYP--GAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVLGLVGYL  207 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeceEEEeeeeccC--eeEEeecccccccCChhhhhheehhhHHHHHHHHHHHHH
Confidence            456788999999999999999999999875555543233  899887432   345667889999999999999987654


Q ss_pred             HHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHHHH
Q 008143          405 VGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQ  484 (576)
Q Consensus       405 vGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrIl~  484 (576)
                      .-  .                   ++ +                       +....++++.+.++||+|+-|||||||++
T Consensus       208 l~--~-------------------~~-~-----------------------l~~la~iNl~lavfNLlP~~pLDGg~il~  242 (277)
T cd06162         208 LL--I-------------------ET-F-----------------------LKYLISLSGALAVINAVPCFALDGQWILS  242 (277)
T ss_pred             HH--H-------------------HH-H-----------------------HHHHHHHHHHHHHhhcCCCCCCChHHHHH
Confidence            21  0                   00 0                       22456788888899999999999999999


Q ss_pred             HHhhhhH
Q 008143          485 GAFGRNA  491 (576)
Q Consensus       485 Al~Grr~  491 (576)
                      +++.++.
T Consensus       243 ~ll~~~~  249 (277)
T cd06162         243 TFLEATL  249 (277)
T ss_pred             HHHHHHh
Confidence            9997553

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.49  E-value=2.8e-13  Score=130.43  Aligned_cols=132  Identities=21%  Similarity=0.271  Sum_probs=85.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhCCccccc----ceeeccc---cccc---------ceeEee-----CCCCCCChhhhhhh
Q 008143          329 AYGVLGVLLFHDVGHFLAAFPKKVKLSI----PFFIPNI---TLGS---------FGAITQ-----FKSILPDRSTKVDI  387 (576)
Q Consensus       329 al~ll~IL~vHElGHylaArr~gVk~sl----PyFIP~~---~lGT---------fGAvir-----~ks~~p~RkaLFDI  387 (576)
                      .++++..+..||+||.++|+++|.++..    -.+-|.-   .+|+         .++..+     .+....+|++.+-|
T Consensus         5 ~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~v   84 (181)
T cd06158           5 IIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLLV   84 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhhh
Confidence            4557778899999999999999998752    2222310   0111         123322     11223467889999


Q ss_pred             eehhhHHHHHHHHHHHHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHH
Q 008143          388 SLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTT  467 (576)
Q Consensus       388 aiAGPLAG~vval~llivGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vT  467 (576)
                      ++|||+++++++++..+.- .+....   .      ..  ..+.+.                    .-+....++|+...
T Consensus        85 alAGP~~n~~la~i~~~~~-~~~~~~---~------~~--~~~~l~--------------------~~~~~~~~~Ni~l~  132 (181)
T cd06158          85 SLAGPLSNLLLALLFALLL-RLLPAF---G------GV--VASFLF--------------------LMLAYGVLINLVLA  132 (181)
T ss_pred             hhhhHHHHHHHHHHHHHHH-HHhccc---c------ch--hhHHHH--------------------HHHHHHHHHHHHHH
Confidence            9999999999998765432 221110   0      00  011111                    11234568899999


Q ss_pred             HHhhcCCCCCChHHHHHHHhhhhHH
Q 008143          468 AFNMLPVGCLDGGRAVQGAFGRNAL  492 (576)
Q Consensus       468 aLNLLPvGqLDGGrIl~Al~Grr~~  492 (576)
                      .|||+|+.|||||||+++++.++..
T Consensus       133 lfNLlPipPLDG~~il~~~l~~~~~  157 (181)
T cd06158         133 VFNLLPIPPLDGSKILAALLPRRLA  157 (181)
T ss_pred             HHHhCCCCCCChHHHHHHHcchhHH
Confidence            9999999999999999999988764

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=99.22  E-value=2.4e-12  Score=133.47  Aligned_cols=149  Identities=21%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             HHHHHhhh--HHHHHHHHhhCCcccccceeecccccccceeEee--CCCCCCC-----hhhhhhheehhhHHHHHHHHHH
Q 008143          332 VLGVLLFH--DVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQ--FKSILPD-----RSTKVDISLAGPIAGAALSFSM  402 (576)
Q Consensus       332 ll~IL~vH--ElGHylaArr~gVk~slPyFIP~~~lGTfGAvir--~ks~~p~-----RkaLFDIaiAGPLAG~vval~l  402 (576)
                      .+.+++.|  +..|+.+++.++.....|+++| ...|+.++.++  ..+..|+     ++.+++++.+++++ ..+.-..
T Consensus       181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~-~~v~~~~  258 (375)
T COG0750         181 LLTILVIRLDGEAHAVAAEIIKSLGLTPVVIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVG-LAVEKTG  258 (375)
T ss_pred             ceEEEEEeccceeeeccccceeeEeeecceec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHH-HHHHHHH
Confidence            46788999  9999999999999999999998 66888888886  7777777     99999999999988 5555566


Q ss_pred             HHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 008143          403 FVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRA  482 (576)
Q Consensus       403 livGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrI  482 (576)
                      .++++.++..       .+.+...+..+.+.+-+.-...+..  ..+....|++.+++|+++.++++||+|+.||||||+
T Consensus       259 ~~~~~~~~~l-------~~~~~~~~~~~~l~Gpi~i~~~~~~--~~~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i  329 (375)
T COG0750         259 RLVKLTLKML-------KKLITGDLSLKNLSGPIGIAKIAGA--AASLGLINLLFFLALLSINLGILNLLPIPPLDGGHL  329 (375)
T ss_pred             HHHHHHHHHH-------HHheecccccccccCceehhhhhhH--HHhhHHHHHHHHHHHHHHHHHHHhccCCCccCccHH
Confidence            6666655410       0011111111111111111111110  111345699999999999999999999999999999


Q ss_pred             HHHHhhhhH
Q 008143          483 VQGAFGRNA  491 (576)
Q Consensus       483 l~Al~Grr~  491 (576)
                      +++++.+..
T Consensus       330 ~~~~~e~~~  338 (375)
T COG0750         330 LFYLLEALR  338 (375)
T ss_pred             HHHHHHHHh
Confidence            999997654

>TIGR00054 RIP metalloprotease RseP

Probab=99.15  E-value=1.2e-09  Score=117.39  Aligned_cols=73  Identities=25%  Similarity=0.390  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhCCccccc--------------------ceeecccccccceeEeeCCCC--------C
Q 008143          327 PLAYGVLGVLLFHDVGHFLAAFPKKVKLSI--------------------PFFIPNITLGSFGAITQFKSI--------L  378 (576)
Q Consensus       327 Pfal~ll~IL~vHElGHylaArr~gVk~sl--------------------PyFIP~~~lGTfGAvir~ks~--------~  378 (576)
                      .+.+.+..+.++||+|||++||++||++..                    -=.||+      |++.+|...        +
T Consensus         8 ~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~pl------Gg~v~~~g~~~~~~~~~~   81 (420)
T TIGR00054         8 ASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPL------GGYVKMKGLDKEMEVKPP   81 (420)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecC------cceEeeccCCcccccCCc
Confidence            346677788999999999999999999862                    123554      999998411        0


Q ss_pred             ---------CChhhhhhheehhhHHHHHHHHHHHHH
Q 008143          379 ---------PDRSTKVDISLAGPIAGAALSFSMFVV  405 (576)
Q Consensus       379 ---------p~RkaLFDIaiAGPLAG~vval~lliv  405 (576)
                               .++++.+-|.+|||++++++|++++++
T Consensus        82 ~~~~~~f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~  117 (420)
T TIGR00054        82 ETDGDLFNNKSVFQKAIIIFAGPLANFIFAIFVYIF  117 (420)
T ss_pred             chhhhhhccCCHHHHHHhhhcccHHHHHHHHHHHHH
Confidence                     356677889999999999999988664

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.08  E-value=1.3e-09  Score=108.40  Aligned_cols=135  Identities=26%  Similarity=0.327  Sum_probs=91.7

Q ss_pred             HhhHHHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHHH
Q 008143          323 ESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSM  402 (576)
Q Consensus       323 ~~glPfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~l  402 (576)
                      ..+....++++.-+..||+||+..++++++++....+.      .+|++..++..+.+++..+.+..+||+++..+ .++
T Consensus        42 ~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~~~~i~------~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~al-gpl  114 (230)
T COG1994          42 GDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLLLALLF------GFGGFGFLKPVPVNPRGEFLIRLAGPLVSLAL-GPL  114 (230)
T ss_pred             hhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHHHHHHH------hccceeeecCcCcCHHHHhhhhccchhHHHHH-HHH
Confidence            34556666688899999999999999999887654433      26889999999999999999998888887764 222


Q ss_pred             HHHHHhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHH
Q 008143          403 FVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRA  482 (576)
Q Consensus       403 livGl~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrI  482 (576)
                      .-+.+...... ... ....      .+.+.                    --+...+-+|+++..|||+|+.||||||+
T Consensus       115 ~ni~la~~~~~-~~~-~~~~------~~~~~--------------------~~~~~la~~Nl~L~lFNLiPi~PLDGg~v  166 (230)
T COG1994         115 TNIALAVLGLL-ALS-LFLY------HSVLF--------------------AFLAALALVNLVLALFNLLPIPPLDGGRV  166 (230)
T ss_pred             HHHHHHHHHHH-hhc-cccc------chhHH--------------------HHHHHHHHHHHHHHHHhCCCCCCCChHHH
Confidence            11111100000 000 0000      00000                    01224567899999999999999999999


Q ss_pred             HHHHhhhhHH
Q 008143          483 VQGAFGRNAL  492 (576)
Q Consensus       483 l~Al~Grr~~  492 (576)
                      +|+..-++..
T Consensus       167 lr~~~~~~~~  176 (230)
T COG1994         167 LRALLPRRYG  176 (230)
T ss_pred             HHHHccHHHH
Confidence            9999988764

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.52  E-value=2.1e-07  Score=100.77  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecc---c---c--------cc--cceeEeeCCCCC----------
Q 008143          325 ALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPN---I---T--------LG--SFGAITQFKSIL----------  378 (576)
Q Consensus       325 glPfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~---~---~--------lG--TfGAvir~ks~~----------  378 (576)
                      -+.|.+++..++++||+|||++||+.||++.- |.|=+   +   .        ++  =+|++.+|...-          
T Consensus         7 i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~-FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~   85 (449)
T PRK10779          7 LAAFIVALGVLITVHEFGHFWVARRCGVRVER-FSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRH   85 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeE-EEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhh
Confidence            34467777788899999999999999999974 11110   0   0        00  138888876431          


Q ss_pred             -----CChhhhhhheehhhHHHHHHHHHHHHH
Q 008143          379 -----PDRSTKVDISLAGPIAGAALSFSMFVV  405 (576)
Q Consensus       379 -----p~RkaLFDIaiAGPLAG~vval~lliv  405 (576)
                           .+.++-+-|.+|||++++++|++++..
T Consensus        86 ~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~  117 (449)
T PRK10779         86 HAFNNKTVGQRAAIIAAGPIANFIFAIFAYWL  117 (449)
T ss_pred             hhhccCCHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence                 234566779999999999999887544

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=96.69  E-value=0.0032  Score=62.00  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=54.3

Q ss_pred             HHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHHHHHHH
Q 008143          334 GVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVG  406 (576)
Q Consensus       334 ~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~llivG  406 (576)
                      ....+||+||.++|.-.|-++......|.     -++.+..+.  +++-..+-++.|||++..+.+..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~~i~l~~~-----~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVKGIVLFPD-----GSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcceEEEEeC-----CCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            34789999999999999999998888886     467777766  6666778899999999999887776654

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=96.59  E-value=0.0042  Score=67.79  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHh
Q 008143          454 HPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAF  487 (576)
Q Consensus       454 hPla~aGWlGL~vTaLNLLPvGqLDGGrIl~Al~  487 (576)
                      .-+.+.+.+.+-+..+||||+-.|||||++..++
T Consensus       377 ~~l~~~a~iSi~Lgi~NLlPiP~LDGG~l~f~~~  410 (449)
T PRK10779        377 YYLMFLALISVNLGIINLFPLPVLDGGHLLFLAI  410 (449)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHH
Confidence            4566788899999999999999999999999887

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=94.55  E-value=0.14  Score=53.59  Aligned_cols=79  Identities=24%  Similarity=0.421  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhCCcccccc------------------eeecccccccceeEeeCCCCCCC-------
Q 008143          326 LPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIP------------------FFIPNITLGSFGAITQFKSILPD-------  380 (576)
Q Consensus       326 lPfal~ll~IL~vHElGHylaArr~gVk~slP------------------yFIP~~~lGTfGAvir~ks~~p~-------  380 (576)
                      +.+.+.+......||+||+|.||+.++++...                  |.+..+.+   |++.++......       
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~pl---ggyv~~~~~~~~~~~~~~~   82 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPL---GGYVKMLGEDAEEVVLKGP   82 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCc---cceEEEecCcccccccccc
Confidence            44666777888999999999999999988642                  22211222   444333322221       


Q ss_pred             --hhh---------hhhheehhhHHHHHHHHHHHHHHH
Q 008143          381 --RST---------KVDISLAGPIAGAALSFSMFVVGL  407 (576)
Q Consensus       381 --Rka---------LFDIaiAGPLAG~vval~llivGl  407 (576)
                        +.+         -+-+-.|||+++++.++.+.+...
T Consensus        83 ~~~~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          83 EPRPRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             CcchhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence              111         245789999999998777665543

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=0.079  Score=57.77  Aligned_cols=147  Identities=21%  Similarity=0.305  Sum_probs=86.4

Q ss_pred             hhHHHHH-HHHHHHhhhHHHHHHHHhhCCccccc-ceeecccccccceeEeeC-----CCCCCChhhhhhheehhhHHHH
Q 008143          324 SALPLAY-GVLGVLLFHDVGHFLAAFPKKVKLSI-PFFIPNITLGSFGAITQF-----KSILPDRSTKVDISLAGPIAGA  396 (576)
Q Consensus       324 ~glPfal-~ll~IL~vHElGHylaArr~gVk~sl-PyFIP~~~lGTfGAvir~-----ks~~p~RkaLFDIaiAGPLAG~  396 (576)
                      .+++|.+ +++..+.+||+||.|||.+.||++.. -.||-++.-   ||++.+     ++.++ =++ ..|--||-.=+|
T Consensus       121 ~~I~yf~t~lvi~~vvHElGHalAA~segV~vngfgIfi~aiyP---gafvdl~~dhLqsl~~-fr~-LrIfcAGIWHNf  195 (484)
T KOG2921|consen  121 SGIAYFLTSLVITVVVHELGHALAAASEGVQVNGFGIFIAAIYP---GAFVDLDNDHLQSLPS-FRA-LRIFCAGIWHNF  195 (484)
T ss_pred             ccchhhhhhHHHHHHHHHhhHHHHHHhcCceeeeeEEEEEEEcC---chhhhhhhhHHhhcch-HHH-HHHHhhhHHHHH
Confidence            4555544 56677889999999999999999873 122222112   566543     44433 333 478899999999


Q ss_pred             HHHHHHHHH----HHhhcCCCCCCCC---cccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHH
Q 008143          397 ALSFSMFVV----GLLLSSNPDAAGD---LVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAF  469 (576)
Q Consensus       397 vval~lliv----Gl~ls~~~~~~~~---l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaL  469 (576)
                      +.|+.+.+.    +..+|+.= +.+.   ...+|    ..|+|.+=. .+..|+...+..+..+|-  ..-|.=++-|++
T Consensus       196 vfallc~lal~~lpViLsPfy-a~g~gV~Vtev~----~~Spl~gpr-GL~vgdvitsldgcpV~~--v~dW~ecl~tsl  267 (484)
T KOG2921|consen  196 VFALLCVLALFLLPVILSPFY-AHGEGVTVTEVP----SVSPLFGPR-GLSVGDVITSLDGCPVHK--VSDWLECLATSL  267 (484)
T ss_pred             HHHHHHHHHHHhhhHhhchhh-hcCceEEEEecc----ccCCCcCcc-cCCccceEEecCCcccCC--HHHHHHHHHhhc
Confidence            988876443    33333310 0011   01111    123332211 123454444445555665  367999999999


Q ss_pred             hhcCCCCCChHHHH
Q 008143          470 NMLPVGCLDGGRAV  483 (576)
Q Consensus       470 NLLPvGqLDGGrIl  483 (576)
                      |+=|--.-|+--+-
T Consensus       268 ~~~ngycvsas~vq  281 (484)
T KOG2921|consen  268 DKENGYCVSASLVQ  281 (484)
T ss_pred             ccCCCeeecHHHHh
Confidence            99998887765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	576
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 47/204 (23%)

Query: 318 LYPFVESALPLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSI 377
           +         L   +   ++ H++GH   A    VK+     +P       G +      
Sbjct: 33  IMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGVAMMDK- 85

Query: 378 LPDRSTKVDISLAGPIAGAALSFSMFVVGLLLSSNPDAAGDLVQVPSTLFQGSLLLGLIS 437
              +  ++ I +AGP+    +   + +V      N +    L  +               
Sbjct: 86  -IPKEGELRIGIAGPLVSFIIGIVLLIVSQFFDININGYPLLYTL--------------- 129

Query: 438 RATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGRNALIGFGL 497
                                     L    FN++P   +DGGR ++    +    G+  
Sbjct: 130 ----------------------SLLNLMLGGFNLIPAFPMDGGRILRAILSK--KYGYLK 165

Query: 498 TTYTMLGLGVLGGPLSLPWGLYVI 521
           +T     +G     + L +GL  +
Sbjct: 166 STKIAANIGKSLALIMLLFGLLSM 189

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 41/258 (15%), Positives = 68/258 (26%), Gaps = 105/258 (40%)

Query: 177 ENLFGYSTFWVTKEEPFGDLGEGILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEE 236
           +    +  FW+               L N     E V   LQ  L +I           +
Sbjct: 177 QCKMDFKIFWLN--------------LKNCN-SPETVLEMLQKLLYQI-----------D 210

Query: 237 PN-SEGPDPRGGPRVSFGLLRKEVS-----EPGPTTL------W--QYVIAF------LL 276
           PN +   D     ++    ++ E+      +P    L         +   AF      LL
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 277 ---------FL----------------LTIGSSVELGIASQIN----RLPPEIVKYFTDP 307
                    FL                LT      L +   ++     LP E++   T+P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLT--TNP 327

Query: 308 NAI--------DPPNV-----ELLYPFVESALPLAYGVLGVL----LFHDVGHFLAAFPK 350
             +        D          +    + + +  +  VL       +F      L+ FP 
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----LSVFPP 383

Query: 351 KVKLSIPFFIPNITLGSF 368
                    IP I L   
Sbjct: 384 SAH------IPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 44/297 (14%), Positives = 74/297 (24%), Gaps = 99/297 (33%)

Query: 13  CVNVRGRLHSVPLHNERVQVFKIKSSKKKKKKGSFSCCLQSKGG---------VSYRRVS 63
              +     S   H+  ++  +I S + + ++      L+SK           V   +  
Sbjct: 206 LYQIDPNWTSRSDHSSNIK-LRIHSIQAELRR-----LLKSKPYENCLLVLLNVQNAKA- 258

Query: 64  LRTFDSFRC---FCSANNSSNNSEKNEDNASNDSSVATTSSALDETEEKSSSSSSSSSSS 120
              F+   C                     +    V    SA   T       S + +  
Sbjct: 259 WNAFN-LSCKILL----------------TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 121 NANEFTSDKTPTSASSPPP---TMSPV-----------GSAHNNF--QIDSFKL------ 158
                            P    T +P            G A  +    ++  KL      
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 159 -MELLGPEK---------VDPADVKLIKENLFGYSTFW--VTKEEPFGDLGE-------- 198
            + +L P +         V P     I   L   S  W  V K +    + +        
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAH-IPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 199 -----------GILFLGNLRGKREDVYAKLQSRLVEITGDKYNFFMVEEPNSEGPDP 244
                       I     L+ K E+ YA L   +V    D YN     + +   P  
Sbjct: 419 KQPKESTISIPSIYLE--LKVKLENEYA-LHRSIV----DHYNIPKTFDSDDLIPPY 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	576
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.89

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=1.3e-22  Score=199.02  Aligned_cols=154  Identities=20%  Similarity=0.338  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhCCcccccceeecccccccceeEeeCCCCCCChhhhhhheehhhHHHHHHHHHHHHHH
Q 008143          327 PLAYGVLGVLLFHDVGHFLAAFPKKVKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPIAGAALSFSMFVVG  406 (576)
Q Consensus       327 Pfal~ll~IL~vHElGHylaArr~gVk~slPyFIP~~~lGTfGAvir~ks~~p~RkaLFDIaiAGPLAG~vval~llivG  406 (576)
                      .++++++.++.+||+||+++||++|+++..+.++|+      |+++++++.+  |++.++|++|||+++++++++++++.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i~l~p~------Gg~~~~~~~~--~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLPI------GGVAMMDKIP--KEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECSS------SCBCCCCCCC--SSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccEEEEEe------eeEEEcccCC--ccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999885      8899988753  48899999999999999998775542


Q ss_pred             HhhcCCCCCCCCcccCCccccchhhHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 008143          407 LLLSSNPDAAGDLVQVPSTLFQGSLLLGLISRATLGYTAMHASTVTIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGA  486 (576)
Q Consensus       407 l~ls~~~~~~~~l~~~p~~~f~~s~Llg~la~l~LG~~~~~~~~v~lhPla~aGWlGL~vTaLNLLPvGqLDGGrIl~Al  486 (576)
                      ... +.          +.                       .   ...-+...+|+|+++++|||+|+.|||||||++++
T Consensus       114 ~~~-~~----------~~-----------------------~---~~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~l  156 (224)
T 3b4r_A          114 QFF-DI----------NI-----------------------N---GYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAI  156 (224)
T ss_dssp             TTC-CC----------EE-----------------------T---TEEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHH
T ss_pred             HHc-cC----------cc-----------------------h---HHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHH
Confidence            111 00          00                       0   00113457899999999999999999999999999


Q ss_pred             hhhhH--------HHHHHHHH-HHHHHHHHh-hhhhHHHHHHHHHHHhc
Q 008143          487 FGRNA--------LIGFGLTT-YTMLGLGVL-GGPLSLPWGLYVIICQR  525 (576)
Q Consensus       487 ~Grr~--------~~~~g~~t-~lll~Lg~l-~~~l~l~W~l~vl~~~R  525 (576)
                      ++++.        +...|++. ++++.+|++ .+++.++|++|+++..+
T Consensus       157 l~~~~~~~~a~~~~~~~g~~i~~~l~~~g~~~~~~~l~~i~~fl~~~a~  205 (224)
T 3b4r_A          157 LSKKYGYLKSTKIAANIGKSLALIMLLFGLLSMNIILILVSLFVYFGAE  205 (224)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence            98753        23345433 344445554 35666778888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00