Citrus Sinensis ID: 008173

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----

MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH

ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccc

ccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHccccEEEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHHHHHHHccccHEEEEHHHHHccccccccHHHHHHHHccccccEEEEEccccccccEcccHccccccEEEEEEccccccccccccHHHHHccHHHHHHcccccEEEEEccHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccc

msnlhgwggplpqswLDQQLVLQKKILVRIYElgmnpvlpafsgnvpaalqnvfpsakitqlgnwfsvksdprwcctylldatdpLFIEIGRAFIEQQLKEygrtshiyncdtfdentppvdspeyiSSLGAAIYsgmqsgdsDAVWLMQGWlfsydpfwrppqmkallnsvplgkLVVLDLFAevkpiwstskqfygVPYIWCMLHNfagniemygildsiafgpveartsenttmvgvgmsmegieqnPVVYDLMSEMAFQHEKVDVKAWINQYSvrrygrsvpaIQDAWNVLYHTVynctdgatdknrdvivafpdvdpsiisvtegkyqnygkpvskeavlksetssydhphlwysTSEVIRALELFIASgnelsasntyrydlIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGllachdgfllgpWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIEslesgdgfrlkDWRREWIKLTNdwqngrnvypvesngdaLITSQWLYNKYlqgtgvfdh

msnlhgwggplpqSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPdvdpsiisvtegkyqnygkpVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLtndwqngrnvyPVESNGDALITSQWLYNKYLQGTGVFDH

******WGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENT*****PEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPV****V******SYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAK**********QYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGV***

MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQ**********YEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFDH

*****GWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTG****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		575	2.2.26 [Sep-21-2011]
P54802		743	Alpha-N-acetylglucosamini	yes	no	0.916	0.709	0.378	1e-111

>sp\|P54802\|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2	Back alignment and function desciption

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 327/570 (57%), Gaps = 43/570 (7%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NLH W GPLP SW  +QL LQ ++L ++   GM PVLPAF+G+VP A+  VFP   +T
Sbjct: 204 MGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEAVTRVFPQVNVT 263

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           ++G+W        + C++LL   DP+F  IG  F+ + +KE+G T HIY  DTF+E  PP
Sbjct: 264 KMGSWGHFNCS--YSCSFLLAPEDPIFPIIGSLFLRELIKEFG-TDHIYGADTFNEMQPP 320

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPLGKLVV 179
              P Y+++   A+Y  M + D++AVWL+QGWLF + P FW P Q++A+L +VP G+L+V
Sbjct: 321 SSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLV 380

Query: 180 LDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVG 239
           LDLFAE +P+++ +  F G P+IWCMLHNF GN  ++G L+++  GP  AR   N+TMVG
Sbjct: 381 LDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVG 440

Query: 240 VGMSMEGIEQNPVVYDLMSEMAFQHEKV-DVKAWINQYSVRRYGRSVPAIQDAWNVLYHT 298
            GM+ EGI QN VVY LM+E+ ++ + V D+ AW+  ++ RRYG S P    AW +L  +
Sbjct: 441 TGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRS 500

Query: 299 VYNCT-DGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHL 357
           VYNC+ +     NR  +V  P                          L+  TS      +
Sbjct: 501 VYNCSGEACRGHNRSPLVRRPS-------------------------LQMNTS------I 529

Query: 358 WYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAH 417
           WY+ S+V  A  L + S   L+ S  +RYDL+DLTRQA+ +  +  +     AY   +  
Sbjct: 530 WYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELA 589

Query: 418 GVFQLSRRFL-ELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMW 476
            + +       EL+  +D +LA    FLLG WLE A+  A +E +   YE N+R Q+T+W
Sbjct: 590 SLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW 649

Query: 477 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKL 536
                 E ++L DY NK  +GL+ +YY PR  ++ + +++S+  G  F+   + +   +L
Sbjct: 650 ----GPEGNIL-DYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQL 704

Query: 537 TNDWQNGRNVYPVESNGDALITSQWLYNKY 566
              +   +  YP +  GD +  ++ ++ KY
Sbjct: 705 EQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734

Involved in the degradation of heparan sulfate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
225457148		813	PREDICTED: alpha-N-acetylglucosaminidase	0.998	0.706	0.811	0.0
255540793		809	alpha-n-acetylglucosaminidase, putative	1.0	0.710	0.810	0.0
224121634		812	predicted protein [Populus trichocarpa]	1.0	0.708	0.793	0.0
356519003		812	PREDICTED: alpha-N-acetylglucosaminidase	0.984	0.697	0.800	0.0
297733843		846	unnamed protein product [Vitis vinifera]	0.998	0.678	0.752	0.0
449441031		808	PREDICTED: alpha-N-acetylglucosaminidase	0.984	0.700	0.767	0.0
326515664		829	predicted protein [Hordeum vulgare subsp	0.986	0.683	0.680	0.0
222629680		1129	hypothetical protein OsJ_16433 [Oryza sa	0.986	0.502	0.682	0.0
326519955		829	predicted protein [Hordeum vulgare subsp	0.986	0.683	0.680	0.0
218195716		829	hypothetical protein OsI_17702 [Oryza sa	0.986	0.683	0.680	0.0

>gi\|225457148\|ref\|XP_002280399.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  995 bits (2572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/578 (81%), Positives = 518/578 (89%), Gaps = 4/578 (0%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NLHGWGGPLPQSWLDQQL+LQKKIL R+YELGM PVLPAFSGNVPAAL+ +FPSAKIT
Sbjct: 235 MGNLHGWGGPLPQSWLDQQLLLQKKILARMYELGMTPVLPAFSGNVPAALKYIFPSAKIT 294

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           +LGNWF+V  +PRWCCTYLLDATDPLFIEIG+AFI+QQLKEYGRT HIYNCDTFDENTPP
Sbjct: 295 RLGNWFTVGGNPRWCCTYLLDATDPLFIEIGKAFIQQQLKEYGRTGHIYNCDTFDENTPP 354

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
           VD PEYISSLGAAI+ GMQSGDS+A+WLMQGWLFSYDPFWRPPQMKALL+SVP+G+LVVL
Sbjct: 355 VDDPEYISSLGAAIFRGMQSGDSNAIWLMQGWLFSYDPFWRPPQMKALLHSVPMGRLVVL 414

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV 240
           DLFAEVKPIW TS+QFYGVPYIWCMLHNFAGNIEMYGILD++A GPVEARTSEN+TMVGV
Sbjct: 415 DLFAEVKPIWITSEQFYGVPYIWCMLHNFAGNIEMYGILDAVASGPVEARTSENSTMVGV 474

Query: 241 GMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVY 300
           GMSMEGIEQNPVVYDLMSEMAFQH KVDVK WI  YS RRYG+SVP IQDAWN+LYHTVY
Sbjct: 475 GMSMEGIEQNPVVYDLMSEMAFQHSKVDVKVWIALYSTRRYGKSVPEIQDAWNILYHTVY 534

Query: 301 NCTDGATDKNRDVIVAFPDVDPSIISVTE----GKYQNYGKPVSKEAVLKSETSSYDHPH 356
           NCTDG+ DKNRDVIVAFPD+DPS I   +    G Y  YGK VS+  VLK  T+S++ PH
Sbjct: 535 NCTDGSYDKNRDVIVAFPDIDPSFIPTPKLSMPGGYHRYGKSVSRRTVLKEITNSFEQPH 594

Query: 357 LWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDA 416
           LWYSTSEV  AL LFIASG +L  SNTYRYDL+DLTRQALAKYAN+LFL +IEAYQLND 
Sbjct: 595 LWYSTSEVKDALGLFIASGGQLLGSNTYRYDLVDLTRQALAKYANQLFLEVIEAYQLNDV 654

Query: 417 HGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMW 476
            G    S++FLELVEDMD LLACHDGFLLGPWLESAKQLAQ+E+QE Q+EWNARTQITMW
Sbjct: 655 RGAACHSQKFLELVEDMDTLLACHDGFLLGPWLESAKQLAQDEQQEIQFEWNARTQITMW 714

Query: 477 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKL 536
           FDNT++EASLLRDYGNKYWSGLLRDYYGPRAAIYFKY++ESLE+G+ F LKDWRREWIKL
Sbjct: 715 FDNTEDEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYLLESLETGNEFALKDWRREWIKL 774

Query: 537 TNDWQNGRNVYPVESNGDALITSQWLYNKYLQGTGVFD 574
           TNDWQN RN YPV S+G+A+ TS+ LYNKYLQ   ++D
Sbjct: 775 TNDWQNSRNAYPVRSSGNAIDTSRRLYNKYLQDPEIYD 812

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255540793\|ref\|XP_002511461.1\| alpha-n-acetylglucosaminidase, putative [Ricinus communis] gi\|223550576\|gb\|EEF52063.1\| alpha-n-acetylglucosaminidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224121634\|ref\|XP_002318632.1\| predicted protein [Populus trichocarpa] gi\|222859305\|gb\|EEE96852.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356519003\|ref\|XP_003528164.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297733843\|emb\|CBI15090.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449441031\|ref\|XP_004138287.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|326515664\|dbj\|BAK07078.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|222629680\|gb\|EEE61812.1\| hypothetical protein OsJ_16433 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|326519955\|dbj\|BAK03902.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|218195716\|gb\|EEC78143.1\| hypothetical protein OsI_17702 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
TAIR\|locus:2173209		806	CYL1 "AT5G13690" [Arabidopsis	0.982	0.700	0.6	3.6e-192
RGD\|1564228		739	Naglu "N-acetylglucosaminidase	0.556	0.433	0.481	3.8e-112
UNIPROTKB\|P54802		743	NAGLU "Alpha-N-acetylglucosami	0.551	0.426	0.458	3.1e-108
UNIPROTKB\|H9L296		601	H9L296 "Uncharacterized protei	0.598	0.572	0.436	8.2e-106
FB\|FBgn0014417		778	CG13397 [Drosophila melanogast	0.518	0.383	0.392	3.4e-92
UNIPROTKB\|F1S1D7		744	NAGLU "Uncharacterized protein	0.709	0.548	0.413	2e-81
UNIPROTKB\|A6QM01		667	NAGLU "NAGLU protein" [Bos tau	0.732	0.631	0.399	1.4e-80
DICTYBASE\|DDB_G0291998		798	naglu "alpha-N-acetylglucosami	0.662	0.477	0.366	1e-68

TAIR\|locus:2173209 CYL1 "AT5G13690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1862 (660.5 bits), Expect = 3.6e-192, P = 3.6e-192
 Identities = 345/575 (60%), Positives = 433/575 (75%)

Query:     1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
             M NLH WGGPL ++WLD QL+LQK+IL R+ + GM PVLP+FSGNVP+AL+ ++P A IT
Sbjct:   231 MGNLHAWGGPLSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALRKIYPEANIT 290

Query:    61 QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
             +L NW +V  D RWCCTYLL+ +DPLFIEIG AFI+QQ +EYG  ++IYNCDTF+ENTPP
Sbjct:   291 RLDNWNTVDGDSRWCCTYLLNPSDPLFIEIGEAFIKQQTEEYGEITNIYNCDTFNENTPP 350

Query:   121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPLGKLVV 179
                PEYISSLGAA+Y  M  G+ +AVWLMQGWLFS D  FW+PPQ+KALL+SVP GK++V
Sbjct:   351 TSEPEYISSLGAAVYKAMSKGNKNAVWLMQGWLFSSDSKFWKPPQLKALLHSVPFGKMIV 410

Query:   180 LDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVG 239
             LDL+AEVKPIW+ S QFYG PYIWCMLHNF GNIEMYG LDSI+ GPV+AR S+N+TMVG
Sbjct:   411 LDLYAEVKPIWNKSAQFYGTPYIWCMLHNFGGNIEMYGALDSISSGPVDARVSKNSTMVG 470

Query:   240 VGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTV 299
             VGM MEGIEQNPVVY+L SEMAF+ EKVDV+ W+  Y+ RRY +    I+ AW +LYHTV
Sbjct:   471 VGMCMEGIEQNPVVYELTSEMAFRDEKVDVQKWLKSYARRRYMKENHQIEAAWEILYHTV 530

Query:   300 YNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQ--NY----GKPVSKEAVL-KSETSSY 352
             YNCTDG  D N D IV  PD DPS  SV +   Q  +Y    G   +K  VL + +T+  
Sbjct:   531 YNCTDGIADHNTDFIVKLPDWDPSS-SVQDDLKQKDSYMISTGPYETKRRVLFQDKTADL 589

Query:   353 DHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQ 412
                HLWYST EVI+AL+LF+ +G++LS S TYRYD++DLTRQ L+K AN+++   + A+ 
Sbjct:   590 PKAHLWYSTKEVIQALKLFLEAGDDLSRSLTYRYDMVDLTRQVLSKLANQVYTEAVTAFV 649

Query:   413 LNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQ 472
               D   + QLS +FLEL++DMD LLA  D  LLG WLESAK+LA+N ++ KQYEWNARTQ
Sbjct:   650 KKDIGSLGQLSEKFLELIKDMDVLLASDDNCLLGTWLESAKKLAKNGDERKQYEWNARTQ 709

Query:   473 ITMWFDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRRE 532
             +TMW+D+     S L DY NK+WSGLL DYY PRA +YF  M++SL     F+++ WRRE
Sbjct:   710 VTMWYDSNDVNQSKLHDYANKFWSGLLEDYYLPRARLYFNEMLKSLRDKKIFKVEKWRRE 769

Query:   533 WIKLTNDWQNGRN-VYPVESNGDALITSQWLYNKY 566
             WI +++ WQ   + VYPV++ GDAL  S+ L +KY
Sbjct:   770 WIMMSHKWQQSSSEVYPVKAKGDALAISRHLLSKY 804

GO:0004561 "alpha-N-acetylglucosaminidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

RGD\|1564228 Naglu "N-acetylglucosaminidase, alpha" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P54802 NAGLU "Alpha-N-acetylglucosaminidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L296 H9L296 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0014417 CG13397 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1D7 NAGLU "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QM01 NAGLU "NAGLU protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291998 naglu "alpha-N-acetylglucosaminidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.50	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XII000747	hypothetical protein (812 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIV.2399.1	hypothetical protein (454 aa)	•	•	•	0.919
	gw1.XIII.847.1	hypothetical protein (437 aa)		•	•	0.914
	gw1.28.778.1	hypothetical protein (434 aa)			•	0.899
	gw1.133.86.1	hypothetical protein (437 aa)			•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		575
pfam05089		333	pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (N	1e-133
pfam12972		269	pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase	1e-104

>gnl\|CDD\|218423 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain	Back alignment and domain information

 Score =  390 bits (1005), Expect = e-133
 Identities = 141/266 (53%), Positives = 185/266 (69%), Gaps = 7/266 (2%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M NL GWGGPLPQSW+D+QL LQKKIL R+ ELGM PVLPAF+G+VP AL+  +P A IT
Sbjct: 75  MGNLEGWGGPLPQSWIDKQLALQKKILDRMRELGMTPVLPAFAGHVPRALKRKYPEANIT 134

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
           + G W        +   Y LD TDPLF +I   F+E+Q K YG T HIY+ D F+E  PP
Sbjct: 135 RQGRWGG------FHRPYFLDPTDPLFAKIAARFLEEQKKLYG-TDHIYSADPFNEGGPP 187

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
              P+Y+++ G AIY  MQ  D DAVW++QGWLF    FW+   ++A L++VP G+L+VL
Sbjct: 188 SGDPDYLAAAGQAIYKSMQKADPDAVWVLQGWLFVDSDFWQANPIEAFLSAVPKGRLLVL 247

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV 240
           DLF+E  P W  ++ FYG P+IWCMLHNF GN  +YG LD +A G   AR +  + +VGV
Sbjct: 248 DLFSERYPQWKRTESFYGKPWIWCMLHNFGGNTGLYGNLDLVASGIEAARANPGSNLVGV 307

Query: 241 GMSMEGIEQNPVVYDLMSEMAFQHEK 266
           G++ EGIEQNPVVY+L+ E+A++ + 
Sbjct: 308 GITPEGIEQNPVVYELLLELAWREDP 333

Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. Length = 333

>gnl\|CDD\|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		575
KOG2233		666	consensus Alpha-N-acetylglucosaminidase [Intracell	100.0
PF05089		333	NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-b	100.0
PF12972		267	NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-t	100.0
PF02449		374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	93.77
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	92.14
PF12891		239	Glyco_hydro_44: Glycoside hydrolase family 44; Int	80.86

>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.1e-169  Score=1321.61  Aligned_cols=530  Identities=45%  Similarity=0.861  Sum_probs=514.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 008173            1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL   80 (575)
Q Consensus         1 MgNi~gwgGPLp~~wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~L   80 (575)
                      ||||++||||||++|+..|.-||||||+|||+||||||||+|+||||.+++++||++++++++.|+.|.  ++|||.++|
T Consensus       134 MGNl~awgGpLs~aw~~~ql~LqkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~--s~~~C~l~v  211 (666)
T KOG2233|consen  134 MGNLHAWGGPLSPAWMLNQLLLQKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFT--SRYSCMLLV  211 (666)
T ss_pred             hcCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCC--cceeeeEEc
Confidence            999999999999999999999999999999999999999999999999999999999999999999997  699999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 008173           81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW  160 (575)
Q Consensus        81 dP~DplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~fW  160 (575)
                      .|+||||.+||.+|+++|+|+||.++|+|+||||||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+||
T Consensus       212 ~P~dplF~eIgs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~FW  291 (666)
T KOG2233|consen  212 SPFDPLFQEIGSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDPFW  291 (666)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCCCC
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHhhhCCCCCCEEEEecCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEEe
Q 008173          161 RPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV  240 (575)
Q Consensus       161 ~~~~~~a~L~~Vp~~~mliLDL~~E~~p~W~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m~Gi  240 (575)
                      ++.++||||++||.||||||||++|..|+|++|.+|+|||||||||||||||.+|+|.++.|+.||..|+..+||+|||+
T Consensus       292 ~~~~ikafL~avP~GrllVLDLyaEv~P~~~~Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGt  371 (666)
T KOG2233|consen  292 PPWQIKAFLSAVPRGRLLVLDLYAEVVPAWQMTASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGT  371 (666)
T ss_pred             ChHHHHHHHhcCCcCcEEEEehhhhhhhHHHhhhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCccccccChhHHHHHHhhcCCCCCCCHHHHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCCCC-CcceeccCC
Q 008173          241 GMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATDKN-RDVIVAFPD  319 (575)
Q Consensus       241 G~tpEGi~~NpvvYel~~d~aW~~~~id~~~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~-~~~~~~~P~  319 (575)
                      ||+||||+||||||+||.|++|+++++|++.|+++|+.+|||+.++.+++||.+|.+|||||+++...++ ...+.+||+
T Consensus       372 Gm~~EgI~QN~VvYsf~~e~~wsde~ldl~~Wlksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l~rRp~  451 (666)
T KOG2233|consen  372 GMSMEGIDQNYVVYSFMIERGWSDEPLDLNNWLKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFLYRRPS  451 (666)
T ss_pred             ccCccccccchhhHHHHHHhccCCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceeeEeccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998776665 666777776


Q ss_pred             CCCCcccccccccccCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHhccccCCCC-CcccchHHHHHHHHHHH
Q 008173          320 VDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSAS-NTYRYDLIDLTRQALAK  398 (575)
Q Consensus       320 l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~-~~y~yDLvDvtRQvL~n  398 (575)
                      ++                               .++.+||+.+++..||++||.+.+.+..+ ++|||||||+|||+|+.
T Consensus       452 f~-------------------------------~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqe  500 (666)
T KOG2233|consen  452 FQ-------------------------------RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQE  500 (666)
T ss_pred             cc-------------------------------CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHH
Confidence            54                               14679999999999999999988777666 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCC
Q 008173          399 YANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMWFD  478 (575)
Q Consensus       399 ~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~ek~~yE~NAR~~IT~WG~  478 (575)
                      .++++|.++.+||..||...+.+.|.++++|+.|||.+|+++.+||||.||++||+.|.+.+|++.||.|||+|||+|||
T Consensus       501 lanq~y~e~~sAflkkd~~sl~~~~~~llelf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp  580 (666)
T KOG2233|consen  501 LANQAYLEARSAFLKKDKQSLGALSEKLLELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGP  580 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCcccccccccchhhhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHhhhhhcCCCcCCCCCCCcHHH
Q 008173          479 NTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREW-IKLTNDWQNGRNVYPVESNGDALI  557 (575)
Q Consensus       479 ~~~~~~~~L~DYA~k~W~GL~~dyY~pRW~~f~~~l~~~l~~~~~f~~~~~~~~~-~~~E~~W~~~~~~y~~~p~gd~~~  557 (575)
                      .     |+|+|||||+||||++|||.|||++|++.+.+++..++||+.++|..+| ..+|.+++.++.+||++|.||+++
T Consensus       581 ~-----gqilDYA~kqwaGLvsdYY~pRwrlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs~s~~vYPv~p~Gdt~~  655 (666)
T KOG2233|consen  581 T-----GQILDYANKQWAGLVSDYYGPRWRLFLEWILESLHDGKPFNHTEFSISVFRDVERPFSISNIVYPVKPKGDTLA  655 (666)
T ss_pred             C-----cchhhHHHHHHHHhhhhcccHHHHHHHHHHHHHHhcCCCccccchhhHHHHhhhccccccccccccCCCccHHH
Confidence            5     5899999999999999999999999999999999999999999999998 599999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 008173          558 TSQWLYNKYLQ  568 (575)
Q Consensus       558 ~a~~l~~ky~~  568 (575)
                      +++.|+.||++
T Consensus       656 is~~if~ky~P  666 (666)
T KOG2233|consen  656 ISRHIFSKYFP  666 (666)
T ss_pred             HHHHHHHhcCC
Confidence            99999999963

>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		575
2vc9_A		891	Family 89 Glycoside Hydrolase From Clostridium Perf		2e-67
4a4a_A		914	Cpgh89 (E483q, E601q), From Clostridium Perfringens		2e-66

>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin Length = 891

Back alignment and structure

Iteration: 1

Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 166/564 (29%), Positives = 277/564 (49%), Gaps = 49/564 (8%) Query: 1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60 M N+ G+GGPLP W +Q+ L +K+ R+ G+NPVL +SG VP + A+ Sbjct: 344 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTI 403 Query: 61 QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDE--NT 118 G W P TY+ + F ++ F E+Q + +G ++ Y D F E NT Sbjct: 404 SQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHEGGNT 462 Query: 119 PPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLV 178 +D+ + I + M D+DAVW++Q W + P L + + Sbjct: 463 GDLDN----GKIYEIIQNKMIEHDNDAVWVIQNWQGN-------PSNNKLEGLTKKDQAM 511 Query: 179 VLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMV 238 VLDLF+EV P W+ ++ +P+IW MLHNF G + M + +A + + + MV Sbjct: 512 VLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLA-TEIPKALANSEHMV 569 Query: 239 GVGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHT 298 G+G++ E I NP+ Y+L+ +MA+ ++++ + W Y RRYG++ I +AWN++ T Sbjct: 570 GIGITPEAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDT 629 Query: 299 VYNCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLW 358 Y K D + SII+ G +G +KS S++ H + Sbjct: 630 AYK-------KRNDY---YQGAAESIINARPG----FG--------IKS-ASTWGHSKIV 666 Query: 359 YSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHG 418 Y SE +A+E+F + +E S+ + YD D+ +Q LA A E + + AY + Sbjct: 667 YDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEK 726 Query: 419 VFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQ--EKQYEWNARTQITMW 476 +S +FLEL++ + +L+ FL+G W+E A+ + ++ + + +E+NAR +T W Sbjct: 727 FKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTW 786 Query: 477 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKL 536 + L+DY N+ WSGL DYY R + + L+ G K +W K+ Sbjct: 787 GSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGG----AKAPNIDWFKM 842 Query: 537 TNDWQNGRN----VYPVESNGDAL 556 DW N ++ +YP E++ + L Sbjct: 843 EYDWVNKKSDTDKLYPTEASNENL 866

PyMOL of 2vc9

>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose Length = 914

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		575
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Length = 914	Back alignment and structure

 Score =  621 bits (1603), Expect = 0.0
 Identities = 153/569 (26%), Positives = 260/569 (45%), Gaps = 38/569 (6%)

Query: 1   MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
           M N+ G+GGPLP  W +Q+  L +K+  R+   G+NPVL  +SG VP   +     A+  
Sbjct: 367 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTI 426

Query: 61  QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
             G W      P    TY+ +     F ++   F E+Q + +G  ++ Y  D F +    
Sbjct: 427 SQGGWCGF-DRPDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNT 485

Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFWRPPQMKALLNSVPLGKLVVL 180
                    +   I + M   D+DAVW++Q W          P    L       + +VL
Sbjct: 486 --GDLDNGKIYEIIQNKMIEHDNDAVWVIQNW-------QGNPSNNKLEGLTKKDQAMVL 536

Query: 181 DLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVGV 240
           DLF+EV P W+   +   +P+IW MLHNF G + M    + +A    +A    +  MVG+
Sbjct: 537 DLFSEVSPDWNRL-EERDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALA-NSEHMVGI 594

Query: 241 GMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVY 300
           G++ + I  NP+ Y+L+ +MA+  ++++ + W   Y  RRYG++   I +AWN++  T Y
Sbjct: 595 GITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAY 654

Query: 301 NCTDGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYS 360
              +       + I+      P                           S++ H  + Y 
Sbjct: 655 KKRNDYYQGAAESIINAR---PGF--------------------GIKSASTWGHSKIVYD 691

Query: 361 TSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAHGVF 420
            SE  +A+E+F  + +E   S+ + YD  D+ +Q LA  A E +  +  AY   +     
Sbjct: 692 KSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFK 751

Query: 421 QLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQN--EEQEKQYEWNARTQITMWFD 478
            +S +FLEL++  + +L+    FL+G W+E A+ + ++  +  +  +E+NAR  +T W  
Sbjct: 752 FVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGS 811

Query: 479 NTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTN 538
               +   L+DY N+ WSGL  DYY  R   +   +   L+ G      DW +      N
Sbjct: 812 RNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNIDWFKMEYDWVN 871

Query: 539 DWQNGRNVYPVESNGDALIT-SQWLYNKY 566
              +   +YP E++ + L   ++     Y
Sbjct: 872 KKSDTDKLYPTEASNENLGELAKIAMESY 900

PyMOL of 4a4a

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		575
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	100.0
1kwg_A		645	Beta-galactosidase; TIM barrel, glycoside hydrolas	94.64
3n9k_A		399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	94.52
3tty_A		675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	94.12
3qr3_A		340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	91.97
1w91_A		503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	91.34
1h4p_A		408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	90.66
3icg_A		515	Endoglucanase D; cellulase, xylanase, carbohydrate	89.46
1qnr_A		344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	89.23
2osx_A		481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	89.14
4ekj_A		500	Beta-xylosidase; TIM-barrel fold, hemicellulase, h	88.77
3ndz_A		345	Endoglucanase D; cellotriose, xylanase, carbohydra	88.29
1uhv_A		500	Beta-xylosidase; family 39 glycoside hydrolase, xy	87.96
1vjz_A		341	Endoglucanase; TM1752, structural genomics, JCSG,	87.5
3l55_A		353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	86.61
3nco_A		320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	85.74
2whl_A		294	Beta-mannanase, baman5; glycoside hydrolase, hydro	82.69
1h1n_A		305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	81.6
3aof_A		317	Endoglucanase; glycosyl hydrolase family 5, cellul	81.3
7a3h_A		303	Endoglucanase; hydrolase, cellulose degradation, g	80.84
2epl_X		627	N-acetyl-beta-D-glucosaminidase; glycoside hydrola	80.46
1rh9_A		373	Endo-beta-mannanase; endo-beta-mannase, retaining,	80.28

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A	Back alignment and structure

Probab=100.00  E-value=1.2e-171  Score=1464.66  Aligned_cols=526  Identities=30%  Similarity=0.602  Sum_probs=494.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCcccccccc
Q 008173            1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLL   80 (575)
Q Consensus         1 MgNi~gwgGPLp~~wi~~q~~LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~L   80 (575)
                      ||||+|||||||++||++|.+||||||+|||||||+||||||+||||++||++||+|+|+++|.|+||.+ +.+|+|++|
T Consensus       367 MgNl~~wgGPLp~~w~~~q~~Lq~kIl~RmrelGM~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~gf~~-~~~~~~~~l  445 (914)
T 4a4a_A          367 MQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVN  445 (914)
T ss_dssp             TTSCCSTTCCCCTTHHHHHHHHHHHHHHHHHHHTCEEEEECCSCEECTTHHHHSTTCCEECCCEETTEEC-CEEECSSCC
T ss_pred             hcCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeecCCCcCCCCChHHHhhCCCCeeecCCCCCCCCC-chhcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985 556779999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCCChhHHHHHHHHHHHHHhccCCCceEEEecccCCCCCCC
Q 008173           81 DATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPPVDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDPFW  160 (575)
Q Consensus        81 dP~DplF~~i~~~F~~~q~~~yG~~~h~Y~~DpFnE~~pp~~d~~~L~~~~~~v~~am~~~dP~AvWvmQgW~F~~~~fW  160 (575)
                      +|+||||++||++||+||+++||+++|||+||||||++|+.+.  .|++++++||++|+++||+||||||||+|.     
T Consensus       446 ~p~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~FnE~~~~~~~--~l~~~~~~v~~am~~~dp~AvWv~QgW~~~-----  518 (914)
T 4a4a_A          446 EGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNTGDL--DNGKIYEIIQNKMIEHDNDAVWVIQNWQGN-----  518 (914)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCSCCSEEECCTTTTSCCCTTC--CHHHHHHHHHHHHHHHCTTCEEEEEEBTTB-----
T ss_pred             CCCChHHHHHHHHHHHHHHHHhCCcccccccCccccCCCCCCc--CHHHHHHHHHHHHHHhCCCCEEEEcccCCC-----
Confidence            9999999999999999999999976899999999999876553  389999999999999999999999999974     


Q ss_pred             CchhHHHhhhCCCC-CCEEEEecCCCcccccccccCCCCCCceeeeccCCCCccccccchhhhhcChHHhhhCCCCceEE
Q 008173          161 RPPQMKALLNSVPL-GKLVVLDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTMVG  239 (575)
Q Consensus       161 ~~~~~~a~L~~Vp~-~~mliLDL~~E~~p~W~~~~~f~G~pwIWc~L~NFGGn~gl~G~l~~i~~~~~~a~~~~~~~m~G  239 (575)
                       +.  ++||++||+ ||||||||+||..|+|+++++ +|||||||||||||||+||+|+++.|+++|.+|+.. +++|+|
T Consensus       519 -~~--~~~L~~vp~~~~mlvLDL~se~~p~w~~~~~-~G~pwiwc~L~NFGGn~gl~G~~~~~~~~~~~a~~~-~~~m~G  593 (914)
T 4a4a_A          519 -PS--NNKLEGLTKKDQAMVLDLFSEVSPDWNRLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALAN-SEHMVG  593 (914)
T ss_dssp             -SC--HHHHTTCSCGGGEEEEETTTTTSCCCHHHHT-TTCCEEEEECCCSTTCCSSCCCHHHHHHHHHHHHHT-CSCEEE
T ss_pred             -Ch--HHHHhCCCCCCCEEEEEcccccccccchhhh-CCCceEEeccccCCCCCCCcccHHHHhhhHHHHhhc-CCCceE
Confidence             33  479999997 999999999999999999988 899999999999999999999999999999999875 689999


Q ss_pred             eeeCccccccChhHHHHHHhhcCCCCCCCHHHHHHHHhhcccCCCChHHHHHHHHHHhcccCCCCCCCC-CCCcceeccC
Q 008173          240 VGMSMEGIEQNPVVYDLMSEMAFQHEKVDVKAWINQYSVRRYGRSVPAIQDAWNVLYHTVYNCTDGATD-KNRDVIVAFP  318 (575)
Q Consensus       240 iG~tpEGi~~NpvvYel~~d~aW~~~~id~~~W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~-~~~~~~~~~P  318 (575)
                      ||+|||||||||||||||+||+|++++||+++||++||+||||+.++++++||++|++|||||+..... .+++++++||
T Consensus       594 ~G~tpEgie~NpvvYeL~~e~aW~~~~id~~~W~~~ya~~RYG~~~~~~~~AW~~L~~tvY~~~~~~~~~~~~s~~~~rP  673 (914)
T 4a4a_A          594 IGITPQAINTNPLAYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAESIINARP  673 (914)
T ss_dssp             EEECCSCSCSCHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHTTTSCCCSCCCSSCCCGGGSCS
T ss_pred             EeechhhcccCHHHHHHHHhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhcCCCCccccCCCcCeeeeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999864333 3568888889


Q ss_pred             CCCCCcccccccccccCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHhccccCCCCCcccchHHHHHHHHHHH
Q 008173          319 DVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHLWYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAK  398 (575)
Q Consensus       319 ~l~p~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~Yd~~~l~~A~~lll~~~~~l~~~~~y~yDLvDvtRQvL~n  398 (575)
                      +|+..                        ..++|+++.++|||++|++||++||+++++|+++++|||||||||||||+|
T Consensus       674 ~l~~~------------------------~~~~w~~~~~~Yd~~~~~~A~~lll~~~~~l~~s~~y~yDLvDvtRQ~l~n  729 (914)
T 4a4a_A          674 GFGIK------------------------SASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLAN  729 (914)
T ss_dssp             CSSCC------------------------CSSTTCCCCCCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc------------------------CccccCcccccCCHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHH
Confidence            87633                        346789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHhhCCCHH--HHHHHHHHhhhccccc
Q 008173          399 YANELFLNIIEAYQLNDAHGVFQLSRRFLELVEDMDGLLACHDGFLLGPWLESAKQLAQNEE--QEKQYEWNARTQITMW  476 (575)
Q Consensus       399 ~~~~~~~~~~~Ay~~kd~~~~~~~~~~~l~li~dlD~LL~t~~~flLg~Wl~~Ar~~g~~~~--ek~~yE~NAR~~IT~W  476 (575)
                      +++.+|.++++||++||.+.|++++++||+||.+||+||+||++|+||+||++||++|.+++  ||++||+|||+|||+|
T Consensus       730 ~~~~~~~~~~~ay~~~d~~~~~~~~~~~l~ll~~~D~lL~t~~~flLg~Wl~~Ar~~a~~~~~~e~~~yE~NAR~qIT~W  809 (914)
T 4a4a_A          730 SAQEYYEVMCNAYNNGNGEKFKFVSGKFLELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTW  809 (914)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCGGGBHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCHHHHHHHHHHhHheEeec
Confidence            99999999999999999999999999999999999999999999999999999999998865  8999999999999999


Q ss_pred             CCCCCcCCCCCcccccccccchhhhhhHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhcCC----CcCCCCCC
Q 008173          477 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGR----NVYPVESN  552 (575)
Q Consensus       477 G~~~~~~~~~L~DYA~k~W~GL~~dyY~pRW~~f~~~l~~~l~~~~~f~~~~~~~~~~~~E~~W~~~~----~~y~~~p~  552 (575)
                      ||+..+++|+|+|||||+|+|||+|||+|||++||++|.++++++++|+..+    |+++|++|++++    +.||++|.
T Consensus       810 G~~~~~~~g~l~DYA~k~W~GL~~dyY~pRW~~f~~~l~~~l~~~~~~~~~~----~~~~e~~W~~~~~~~~~~yp~~~~  885 (914)
T 4a4a_A          810 GSRNNADGGGLKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNID----WFKMEYDWVNKKSDTDKLYPTEAS  885 (914)
T ss_dssp             SSHHHHTTTSCTTTTCCCCBTHHHHTHHHHHHHHHHHHHHHHTTCSCCCCCC----HHHHHHHHHTCCTTTSCCCCCSCC
T ss_pred             cCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCChHH----HHHHHHHHhccccccCCcCCCCCC
Confidence            9975555678999999999999999999999999999999999999998765    469999999964    89999999


Q ss_pred             -CcHHHHHHHHHHHHh
Q 008173          553 -GDALITSQWLYNKYL  567 (575)
Q Consensus       553 -gd~~~~a~~l~~ky~  567 (575)
                       ||++++|++||.||.
T Consensus       886 g~d~~~~a~~~~~ky~  901 (914)
T 4a4a_A          886 NENLGELAKIAMESYS  901 (914)
T ss_dssp             CCCHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHcc
Confidence             599999999999994

PyMOL of 4a4a

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*	Back alignment and structure

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A	Back alignment and structure

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*	Back alignment and structure

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}	Back alignment and structure

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*	Back alignment and structure

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3	Back alignment and structure

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*	Back alignment and structure

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*	Back alignment and structure

>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}	Back alignment and structure

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*	Back alignment and structure

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A	Back alignment and structure

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3	Back alignment and structure

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*	Back alignment and structure

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A	Back alignment and structure

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A	Back alignment and structure

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*	Back alignment and structure

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A	Back alignment and structure

>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A	Back alignment and structure

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		575
d1kwga2		393	A4 beta-galactosidase {Thermus thermophilus [TaxId	93.95
d1ceoa_		340	Endoglucanase CelC {Clostridium thermocellum [TaxI	93.39
d1qnra_		344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	91.83
d1vjza_		325	Endoglucanase homologue TM1752 {Thermotoga maritim	87.04
d2pb1a1		394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	85.24
d1ecea_		358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	83.37

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=93.95  E-value=0.1  Score=48.57  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCCeeccCCCCCCCchhhHhhCCCCceeccCCCCCCCCCCccccccccCCCChHHHHHHHHHHHHHHHH
Q 008173           22 LQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKITQLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKE  101 (575)
Q Consensus        22 LQ~kIl~RmreLGM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gf~~~~~~~~~~~LdP~DplF~~i~~~F~~~q~~~  101 (575)
                      -..++|+.+++.||+||+=-|....|..+.+.+|+.......  +.+   ..+....+.++.+|.+.+..+.|++...+.
T Consensus        52 ~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~~~~~~~~~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (393)
T d1kwga2          52 WLDEAIATLAAEGLKVVLGTPTATPPKWLVDRYPEILPVDRE--GRR---RRFGGRRHYCFSSPVYREEARRIVTLLAER  126 (393)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSTTSCCHHHHHHCGGGSCBCTT--SCB---CCSSSSCCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCCCCchhhhccCcccccccCC--Ccc---cccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            446799999999999998888888899999999876444422  112   123346678899999999999999999999


Q ss_pred             hCCCCcccccCCCCCCCCC
Q 008173          102 YGRTSHIYNCDTFDENTPP  120 (575)
Q Consensus       102 yG~~~h~Y~~DpFnE~~pp  120 (575)
                      |+....+...+..||..-.
T Consensus       127 ~~~~~~~~~~~~~ne~~~~  145 (393)
T d1kwga2         127 YGGLEAVAGFQTDNEYGCH  145 (393)
T ss_dssp             HTTCTTEEEEECSSSTTTT
T ss_pred             hcCCceEEEEeeccccccc
Confidence            9865567788888987543

PyMOL of d1kwga2

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}	Back information, alignment and structure