Citrus Sinensis ID: 008177
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | 2.2.26 [Sep-21-2011] | |||||||
| Q56XQ6 | 601 | Probable peptide/nitrate | yes | no | 0.961 | 0.920 | 0.731 | 0.0 | |
| Q93VV5 | 591 | Probable peptide/nitrate | no | no | 0.913 | 0.888 | 0.705 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.911 | 0.919 | 0.379 | 1e-105 | |
| Q8H157 | 585 | Nitrate transporter 1.2 O | no | no | 0.899 | 0.883 | 0.407 | 1e-104 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.900 | 0.913 | 0.395 | 1e-102 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.904 | 0.912 | 0.371 | 1e-100 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.892 | 0.876 | 0.378 | 2e-98 | |
| Q9LSF0 | 515 | Probable peptide/nitrate | no | no | 0.853 | 0.953 | 0.357 | 5e-95 | |
| Q9LVE0 | 590 | Nitrate transporter 1.3 O | no | no | 0.899 | 0.876 | 0.386 | 8e-95 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.904 | 0.872 | 0.368 | 2e-93 |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/567 (73%), Positives = 469/567 (82%), Gaps = 14/567 (2%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
AA+FVLG QAFEM AIAAVGNNLITYVFNEMHFPLSKSAN+VTNFIGTVFLLSL GGFLS
Sbjct: 44 AALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLS 103
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
DSYLGSF TML+FG +E+SGFILLSVQAHLP+LRP CNM + T +C EA GYKA
Sbjct: 104 DSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTI---HCVEANGYKAAT 160
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182
LY AL LVALGSGCLKPNIISHGA+QF++++ +KLS++FN AYFAF MGQLIALTLLVWV
Sbjct: 161 LYTALCLVALGSGCLKPNIISHGANQFQRKDLRKLSSFFNAAYFAFSMGQLIALTLLVWV 220
Query: 183 QTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242
QTHSGMD+GFGVSAA MA G+ISL+ G YRNK P GSIFTPIAQVFVAAITKRKQICP
Sbjct: 221 QTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICP 280
Query: 243 SNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQ 302
SN ++H ++ RV + LLH+ KFRFLDKACIK Q A ESPW+LCT+ Q
Sbjct: 281 SNPNMVHQPSTDLV--RV-------KPLLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQ 331
Query: 303 VEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYIL 362
V QVKI++SV+PIFACTIIFNTILAQLQTFSVQQGS+M+ IT FQIPPASLQAIPYI+
Sbjct: 332 VHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYII 391
Query: 363 LIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNS 422
LIF VPLYE FVP+A K T DSGISPLQR+G GLF+ATFSMVAAAL+EKKRR + L
Sbjct: 392 LIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ 451
Query: 423 NQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482
N +LSIFWIAPQFLIFGLSEMFTAVGL+EFFYKQS + MQSFLTAMTYCSYSFGFYLSS+
Sbjct: 452 NVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSV 511
Query: 483 LVSLVNKITSRT-SSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNP 541
LVS VN++TS S + GWL DNDLNKDRLD FYWLLA+LS INFFNYLFWSRWYS +P
Sbjct: 512 LVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDP 571
Query: 542 SLSPTTTPHESHGEDLENQSLNNNISK 568
S + + S E LEN + ++ ++
Sbjct: 572 SATHHSAEVNSL-EALENGEIKDSTTE 597
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/540 (70%), Positives = 453/540 (83%), Gaps = 15/540 (2%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA+FVLGLQAFE+ IAAVGNNLITYV NEMHFPLSK+ANIVTNF+GT+F+ +L GG+
Sbjct: 45 MRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLGGY 104
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSD++LGSFWT++IFGFVELSGFILLSVQAHLPQL+P CN L D Q C+EAKG+KA
Sbjct: 105 LSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLID----QTCEEAKGFKA 160
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALT 177
+I ++ALYLVALGSGC+KPN+I+HGADQF + ++SK+LS+YFN AYFAF MG+LIALT
Sbjct: 161 MIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALT 220
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
LLVWVQTHSGMDIGFGVSAAAM +G+ISL+ G +RNK PR SIFTPIA V VAAI KR
Sbjct: 221 LLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKR 280
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD-GANESPWK 296
K PS+ +LHG + N V+ S L HT +FRFLDKACIK+QD ESPW+
Sbjct: 281 KLASPSDPRMLHGDHH--VANDVVPSS----TLPHTPRFRFLDKACIKIQDTNTKESPWR 334
Query: 297 LCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQ 356
LCTVTQVEQVK ++S+VPIFA TI+FNTILAQLQTFSVQQGS+M+ +++N F IPPASLQ
Sbjct: 335 LCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQ 394
Query: 357 AIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRR 416
AIPYI+LIF+VPLY+ VP A K T +SGI PL R+G+GLF++TFSMV+AA++EKKRR
Sbjct: 395 AIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRR 454
Query: 417 TAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFG 476
+++ +ILSIFWI PQFLIFG+SEMFTAVGLIEFFYKQS +GM+SFL A+TYCSYSFG
Sbjct: 455 DSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFG 514
Query: 477 FYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536
FY SS+LVS+VNKITS TS + GWL +NDLNKDRLDLFYWLLA LSL+NF +YLFWSRW
Sbjct: 515 FYFSSVLVSVVNKITS-TSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSRW 573
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/556 (37%), Positives = 335/556 (60%), Gaps = 32/556 (5%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A F+LG + E A +G NL+ Y+ + ++ + +AN VTN+ GT ++ L G F++
Sbjct: 30 ACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIA 89
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
D+YLG +WT+ F F+ +SG LL++ A +P L+P CN DT + Q A +
Sbjct: 90 DAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN--ADTCHPNSSQTA------V 141
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQ---ESKKLSTYFNVAYFAFCMGQLIALTLL 179
++ALY++ALG+G +KP + S GADQF + E K S++FN YF+ +G LIA T+L
Sbjct: 142 FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVL 201
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VW+Q + G GFGV AM + + FG YR + P GS T I QV VAA K
Sbjct: 202 VWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISV 261
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIK-----VQDGANESP 294
P + +L + ++ + + +R L+HT+ +F DKA ++ ++DG +P
Sbjct: 262 KVPEDKSLLFETADDESNIK------GSRKLVHTDNLKFFDKAAVESQSDSIKDG-EVNP 314
Query: 295 WKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPAS 354
W+LC+VTQVE++K I++++P++A I+F T+ +Q+ T V QG+ MD + F+IP AS
Sbjct: 315 WRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSAS 374
Query: 355 LQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKK 414
L + ++F P+Y+ +P+A KFT+ + G + LQR+G+GL V+ F+M+ A ++E
Sbjct: 375 LSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVV 434
Query: 415 R-----RTAALNSNQI-LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468
R A + QI +SIFW PQ+L+ G +E+FT +G +EFFY Q+ + M+S +A+
Sbjct: 435 RLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL 494
Query: 469 TYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF 528
+ + + G YLS++LV++V KIT + GW+ DN LN+ LD F++LLA LS +NF
Sbjct: 495 SLTTVALGNYLSTVLVTVVMKITKKNGKP--GWIPDN-LNRGHLDYFFYLLATLSFLNFL 551
Query: 529 NYLFWSRWYSYNPSLS 544
YL+ S+ Y Y ++
Sbjct: 552 VYLWISKRYKYKKAVG 567
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 234/574 (40%), Positives = 343/574 (59%), Gaps = 57/574 (9%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA FVL ++ E A A +NL+ Y+ MH SKSAN VTNF+GT FLL+L GGF
Sbjct: 29 MLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMGTAFLLALLGGF 88
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSD++ +F LI +E G I+L++QA P L P C+ + C+E G KA
Sbjct: 89 LSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCD-------SPTCEEVSGSKA 141
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCM--GQLIA 175
+L++ LYLVALG G +K ++ SHGA+QF + + K+ ST+FN YF FC+ G L+A
Sbjct: 142 AMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFN--YFVFCLACGALVA 199
Query: 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAIT 235
+T +VW++ + G + GFGVS A+ V ++ + G YRNK P GS T I +V +AA
Sbjct: 200 VTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASV 259
Query: 236 KRKQICPSNTYILHGSQNNIATNRVLAISPNN----RNLLHTEKFRFLDKA--------- 282
K C S + S N +A+ +++SP+N + E L+K
Sbjct: 260 K---CCSSGS-----SSNAVAS---MSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPR 308
Query: 283 -----CIKVQDG-ANESPWKL---CTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFS 333
+KV +G A+E P CTV QVE VKI++ ++PIFACTI+ N LAQL TFS
Sbjct: 309 AQLTNSLKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFS 368
Query: 334 VQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQR 393
VQQ ++M+ KI +IPPASL P + ++ + P+Y+ + +P A K TK ++G++ LQR
Sbjct: 369 VQQAASMNTKI-GSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQR 427
Query: 394 VGVGLFVATFSMVAAALIEKKRRTAA-----LNSNQILSI--FWIAPQFLIFGLSEMFTA 446
+GVGL ++ +M AAL+E KR+ A L+S + L + WIA Q+L G +++FT
Sbjct: 428 IGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTL 487
Query: 447 VGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDND 506
GL+E+F+ ++ M+S T++++ S + G+YLSS++VS+VN IT SS WL
Sbjct: 488 AGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITG--SSGNTPWLRGKS 545
Query: 507 LNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYN 540
+N+ +LD FYWL+ LS NF +YLFW+ Y Y
Sbjct: 546 INRYKLDYFYWLMCVLSAANFLHYLFWAMRYKYR 579
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Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/551 (39%), Positives = 328/551 (59%), Gaps = 33/551 (5%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA FVL ++ E A A +NL+ Y+ N MH L++S++ VT F+ T FLL+L GGF
Sbjct: 31 MLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMATAFLLALLGGF 90
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
L+D++ +F LI +E G ILL++QA P L P PC + C+ G KA
Sbjct: 91 LADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCK----SSAALRCEVVGGSKA 146
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCM--GQLIA 175
L++ LYLV+LG G +K ++ SHGA+QF + + K+ ST+FN Y+ FC+ G L+A
Sbjct: 147 AFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN--YYVFCLSCGALVA 204
Query: 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAIT 235
+T +VW++ + G + GFGVS ++ + ++ + G Y+NK PRGS T I +V +AA
Sbjct: 205 VTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASI 264
Query: 236 KRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPW 295
C S T H + + + + T L+KA +G W
Sbjct: 265 VS---CSSKTSSNHFTSREVQSEH----EEKTPSQSLTNSLTCLNKAI----EGKTHHIW 313
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
CTV QVE VKI++ ++PIF CTI+ N LAQL T+SV Q + M+ KI N F +P ASL
Sbjct: 314 LECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVN-FNVPSASL 372
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
P + ++ + P Y+ + +P A K TK + GI+ LQR+GVGL ++ +M AAL+E KR
Sbjct: 373 PVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432
Query: 416 RTAA-----LNSNQILSI--FWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468
+ A L+S + L I WIA Q+L G +++FT GL+EFF+ ++ M+S T++
Sbjct: 433 KQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSL 492
Query: 469 TYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF 528
++ S + G+YLSS++V +VN++T S WL + LN++RLDLFYWL+ LS++NF
Sbjct: 493 SWASLALGYYLSSVMVPIVNRVTKSAGQSP--WLGEK-LNRNRLDLFYWLMCVLSVVNFL 549
Query: 529 NYLFWSRWYSY 539
+YLFW++ Y Y
Sbjct: 550 HYLFWAKRYKY 560
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/555 (37%), Positives = 327/555 (58%), Gaps = 35/555 (6%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A F+LG + E A + NLI Y+ +M+ ++ V+N+ GT + L G F++
Sbjct: 31 ACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIA 90
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
D+YLG +WT+ F + ++G LL++ A +P L P T + C G A I
Sbjct: 91 DAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP--------TCSGETCHATAGQTA-I 141
Query: 123 LYLALYLVALGSGCLKPNIISHGADQF-----KKQESKKLSTYFNVAYFAFCMGQLIALT 177
++ALYL+ALG+G +KP + S GADQF K++ESK S++FN YF +G +IA +
Sbjct: 142 TFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESK--SSFFNWFYFVINVGAMIASS 199
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVW+Q + G G GV AMA+ ++ G YR + P GS T + QV VA+ K
Sbjct: 200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD----GANES 293
K P + +L+ +Q+ A + ++ +R L HT+ F DKA ++ + A S
Sbjct: 260 KVKIPEDESLLYENQD--AESSIIG----SRKLEHTKILTFFDKAAVETESDNKGAAKSS 313
Query: 294 PWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPA 353
WKLCTVTQVE++K ++ ++PI+A I+F ++ +Q+ T V QG+ +D + F+IP A
Sbjct: 314 SWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSA 373
Query: 354 SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEK 413
SL + ++F P+Y+ + VP A K+T + G + LQR+G+GL ++ FSMV+A ++E
Sbjct: 374 SLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEV 433
Query: 414 KR----RTAALNSNQI--LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTA 467
R +T L + + ++IFW PQ+ + G +E+FT +G +EFFY Q+ + M+S +A
Sbjct: 434 ARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 493
Query: 468 MTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINF 527
++ + +FG YLS+ LV+LV K+T S GW++ N LN LD F+WLLA LS +NF
Sbjct: 494 LSLTAIAFGNYLSTFLVTLVTKVTR--SGGRPGWIAKN-LNNGHLDYFFWLLAGLSFLNF 550
Query: 528 FNYLFWSRWYSYNPS 542
YL+ ++WY+Y +
Sbjct: 551 LVYLWIAKWYTYKKT 565
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 206/544 (37%), Positives = 314/544 (57%), Gaps = 31/544 (5%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A F+LG + E A + NLITY+ ++H +A VT + GT +L L G L+
Sbjct: 47 ACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLA 106
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
D+Y G +WT+ F + G L++ A +P L+P+ C + D C A + +
Sbjct: 107 DAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC--IGDF-----CPSATPAQYAM 159
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCMGQLIALTLL 179
+ LYL+ALG+G +KP + S GADQF +S+ + +++FN YF+ +G L++ +LL
Sbjct: 160 FFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLL 219
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VW+Q + G +GFG+ M + + S FG +YR + P GS T I+QV VA+ K
Sbjct: 220 VWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSV 279
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACI----KVQDGANESPW 295
P + +L+ +Q+ N +A +R + HT+ ++LDKA + + + G + W
Sbjct: 280 KVPEDATLLYETQDK---NSAIA---GSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSW 333
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTVTQVE++KI++ + PI+A IIF+ + AQ+ T VQQG AM+ KI FQ+PPA+L
Sbjct: 334 RLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKI-GSFQLPPAAL 392
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
+I VPLY+ VP+A KFT D G + +QR+G+GLFV+ M AAA++E R
Sbjct: 393 GTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIR 452
Query: 416 RTAALNSNQI-------LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468
A + + +S+ W PQ+ I G +E+F +G +EFFY QS + M+S +A+
Sbjct: 453 LHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSAL 512
Query: 469 TYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF 528
+ + G YLSSL+++LV T+R GW+SDN LN LD F+WLLA LSL+N
Sbjct: 513 ALLTNALGNYLSSLILTLVTYFTTRNGQ--EGWISDN-LNSGHLDYFFWLLAGLSLVNMA 569
Query: 529 NYLF 532
Y F
Sbjct: 570 VYFF 573
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis thaliana GN=At3g25260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 192/537 (35%), Positives = 313/537 (58%), Gaps = 46/537 (8%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
+ AA ++ E A N + Y M++ K+A +VTNF+GT FLL++FGGF
Sbjct: 25 IKAAFIACVVETMENMVFLACSTNFMMYFTKSMNYSTPKAATMVTNFVGTSFLLTIFGGF 84
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
++DS+L F ++FG +EL G I+L++QAH+ +L+P Q ++ ++
Sbjct: 85 VADSFLTRFAAFVLFGSIELLGLIMLTLQAHITKLQP------------QGGKKPSTPQS 132
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLV 180
+L+ LY +A+G G +K ++ +HG DQ + + +S +FN +F+ C+G +A+TL+V
Sbjct: 133 TVLFTGLYAIAIGVGGVKGSLPAHGGDQIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMV 192
Query: 181 WVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240
W++ + G F +S A +A + + G +YR K P GS T I VFV+A R +
Sbjct: 193 WIEENIGWSSSFTISTAVLASAIFVFVAGCPMYRFKRPAGSPLTRIVNVFVSAARNRNRF 252
Query: 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTV 300
+ +QN+ +T++ + H KF+FL+KA + + A
Sbjct: 253 VTDAEVV---TQNHNSTDKSI----------HHNKFKFLNKAKLNNKISA---------- 289
Query: 301 TQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPY 360
TQVE+ + ++++PIF TII N +AQ+ TFSVQQG + K++ F+IP ASL AIP
Sbjct: 290 TQVEETRTFLALLPIFGSTIIMNCCVAQMGTFSVQQGMVTNRKLSRSFEIPVASLNAIPL 349
Query: 361 ILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAAL 420
+ ++ + LYE+ + S + S L+R+G GL + + SM AA++E KR+ A+
Sbjct: 350 LCMLSSLALYELFGKRILSNSERSSS--FNLKRIGYGLALTSISMAVAAIVEVKRKHEAV 407
Query: 421 NSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLS 480
++N +S+FW+ QF++ LS+M T G++EFF+++S M+S TA+ +CS + GF+LS
Sbjct: 408 HNNIKISVFWLELQFVMLSLSDMLTVGGMLEFFFRESPASMRSMSTALGWCSTAMGFFLS 467
Query: 481 SLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWY 537
S+LV +VN IT GWL D DLN+ RL+LFY +L L+ +N FNY+FW++ Y
Sbjct: 468 SVLVEVVNGIT--------GWLRD-DLNESRLELFYLVLCVLNTLNLFNYIFWAKRY 515
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 213/551 (38%), Positives = 320/551 (58%), Gaps = 34/551 (6%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A +LG + E + + NL+TY+ ++H +KSA IVTNF+GT+ LL L GGFL+
Sbjct: 35 GAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATIVTNFMGTLNLLGLLGGFLA 94
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
D+ LG + + I V G +LL+V + +RP C+ C EA G++ +
Sbjct: 95 DAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDFRRLH--HQCIEANGHQLAL 152
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALTLL 179
LY+ALY +ALG G +K N+ G+DQF +E K++ +FN YF+ +G L A+ L
Sbjct: 153 LYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFNRFYFSISVGSLFAVIAL 212
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
V+VQ + G G+G+SAA M V I L+ G YR K P+GS FT I +V A KRK+
Sbjct: 213 VYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSPFTTIWRVGFLAWKKRKE 272
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIK-------VQDGANE 292
P++ +L+G +N + HTE + LDKA I +D +
Sbjct: 273 SYPAHPSLLNGY--------------DNTTVPHTEMLKCLDKAAISKNESSPSSKDFEEK 318
Query: 293 SPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPP 352
PW + TVTQVE+VK++M +VPI+A I+F TI +Q+ TF+V+Q + MD K+ + F +P
Sbjct: 319 DPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLGS-FTVPA 377
Query: 353 ASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIE 412
S A + ++ L E VFVP+ + TKK GI+ LQR+GVGL + +M AA+IE
Sbjct: 378 GSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMAVAAVIE 437
Query: 413 KKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCS 472
RR AA+N+++ +S FW+ PQ+ + G E F VG +EFF +++ E M+S T + +
Sbjct: 438 NARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLST 497
Query: 473 YSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLF 532
S GF++SSLLVSLV+++T ++ WL N LNK RL+ FYWLL L +NF ++
Sbjct: 498 ISMGFFVSSLLVSLVDRVTDKS------WLRSN-LNKARLNYFYWLLVVLGALNFLIFIV 550
Query: 533 WSRWYSYNPSL 543
++ + Y +
Sbjct: 551 FAMKHQYKADV 561
|
Low-affinity nitrate transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 204/554 (36%), Positives = 319/554 (57%), Gaps = 34/554 (6%)
Query: 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY 65
F+ + E A+ N+I+Y+ ++H PL+K+AN +TNF GT L L G F++DS+
Sbjct: 32 FIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSF 91
Query: 66 LGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYL 125
G FWT+ + G LL++ A +P LRP PC G + C A + ILY+
Sbjct: 92 AGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK------GEEVCVVADTAQLSILYV 145
Query: 126 ALYLVALGSGCLKPNIISHGADQFKKQE---SKKLSTYFNVAYFAFCMGQ--LIALTLLV 180
AL L ALGSG ++P +++ GADQF + + + K YFN ++ FCMG L+A+T+LV
Sbjct: 146 ALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN--WYYFCMGAAVLLAVTVLV 203
Query: 181 WVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240
W+Q + G +G G+ AM + +I+ + G +YR+ P GS FT + QV VAA KRK
Sbjct: 204 WIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLR 263
Query: 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD-----GANESPW 295
S+ +L+ + A IS + L HT+ FLDKA I ++ G + W
Sbjct: 264 MVSDPSLLYFNDEIDA-----PISLGGK-LTHTKHMSFLDKAAIVTEEDNLKPGQIPNHW 317
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+L TV +VE++K ++ + PI A I+ T AQ TFS+QQ M+ +TN FQIP S+
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
+ ++ + Y+ VFV VA KFT + GI+ L R+G+G ++ + + A +E KR
Sbjct: 378 SVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKR 437
Query: 416 RTAALNSNQI--------LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTA 467
++ A+ + +S W+ PQ+ + G++E F ++G +EFFY Q+ E M+S TA
Sbjct: 438 KSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATA 497
Query: 468 MTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINF 527
+ + + S G Y+S+LLV+LV+K +++ S WL DN+LN+ RL+ FYWL+ L +N
Sbjct: 498 LFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEYFYWLITVLQAVNL 555
Query: 528 FNYLFWSRWYSYNP 541
YL+ ++ Y+Y P
Sbjct: 556 VYYLWCAKIYTYKP 569
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| 359493531 | 592 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.951 | 0.827 | 0.0 | |
| 224127762 | 600 | predicted protein [Populus trichocarpa] | 0.965 | 0.925 | 0.801 | 0.0 | |
| 147827251 | 650 | hypothetical protein VITISV_011385 [Viti | 0.979 | 0.866 | 0.743 | 0.0 | |
| 224120010 | 613 | predicted protein [Populus trichocarpa] | 0.982 | 0.921 | 0.736 | 0.0 | |
| 224129508 | 625 | predicted protein [Populus trichocarpa] | 0.977 | 0.899 | 0.730 | 0.0 | |
| 297734747 | 876 | unnamed protein product [Vitis vinifera] | 0.886 | 0.582 | 0.795 | 0.0 | |
| 225465269 | 607 | PREDICTED: probable peptide/nitrate tran | 0.953 | 0.902 | 0.723 | 0.0 | |
| 356543362 | 612 | PREDICTED: probable peptide/nitrate tran | 0.951 | 0.893 | 0.699 | 0.0 | |
| 147832226 | 630 | hypothetical protein VITISV_037742 [Viti | 0.935 | 0.853 | 0.721 | 0.0 | |
| 297851778 | 599 | proton-dependent oligopeptide transport | 0.944 | 0.906 | 0.747 | 0.0 |
| >gi|359493531|ref|XP_002265350.2| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/580 (82%), Positives = 522/580 (90%), Gaps = 17/580 (2%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
MTAA+FVLGLQAFEM AIAAVGNNLITYVFN+MHFPLSKSANIVTNFIGTVFLLSL GGF
Sbjct: 22 MTAAIFVLGLQAFEMMAIAAVGNNLITYVFNDMHFPLSKSANIVTNFIGTVFLLSLLGGF 81
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRP+ C M+ D D NC EAKGYKA
Sbjct: 82 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPAHCTMVLDED---NCSEAKGYKA 138
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCMGQLIALT 177
LI +LALYLVALGSGCLKPNIISHGADQF+K++SK KLS+YFN AYFAFCMG+L+ALT
Sbjct: 139 LIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYFNAAYFAFCMGELVALT 198
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVWVQTHSGMD+GFGVSAAAMA+GLISLI G VY NK PRGSIFTPIAQVFVAAITKR
Sbjct: 199 VLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGSIFTPIAQVFVAAITKR 258
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGA--NESPW 295
KQICPSN+ +LHGSQ + LA S N RNLLHTEKFRFLDKACIKVQDG +ESPW
Sbjct: 259 KQICPSNSGMLHGSQ---LPEQALA-SSNVRNLLHTEKFRFLDKACIKVQDGTQTSESPW 314
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTVTQVEQVKII+SVVPIFACTIIFNTILAQLQTFSVQQGSAM+ ++ FQIPPASL
Sbjct: 315 RLCTVTQVEQVKIIISVVPIFACTIIFNTILAQLQTFSVQQGSAMNTRLIKGFQIPPASL 374
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
Q+IPY++LIF+VPLYE VFVP+A K T +DSGISPLQR+G+GLFVAT SMV+AAL+EKKR
Sbjct: 375 QSIPYLMLIFLVPLYETVFVPIARKITGRDSGISPLQRIGIGLFVATLSMVSAALVEKKR 434
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
RT+AL+SN+ILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQS+EGMQSFLTAMTYCSYSF
Sbjct: 435 RTSALDSNRILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSVEGMQSFLTAMTYCSYSF 494
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GF+LSSLLVSLVN+ITS SSS GWL DNDLNKDRLDLFYWLLAALSLINFFNYLFWSR
Sbjct: 495 GFFLSSLLVSLVNRITSSHSSS-RGWLGDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 553
Query: 536 WYSYNPSLSPTTTPHESHGEDLENQSLNNNISKHILRADN 575
WYSYNPSLSPT+ H S+ EDLEN SLN+ SK I ADN
Sbjct: 554 WYSYNPSLSPTSQ-HGSYAEDLENHSLNS--SKQI-AADN 589
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127762|ref|XP_002329171.1| predicted protein [Populus trichocarpa] gi|222870952|gb|EEF08083.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/570 (80%), Positives = 507/570 (88%), Gaps = 15/570 (2%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AAVFVLGLQAFEM IAAVGNNLITYVFN+MHFPLSKSANIVTNF+GTVFLLSL GGF
Sbjct: 31 MAAAVFVLGLQAFEMMGIAAVGNNLITYVFNDMHFPLSKSANIVTNFVGTVFLLSLLGGF 90
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRP C+M++D +C EAKGYKA
Sbjct: 91 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPPSCDMVSDG---VDCVEAKGYKA 147
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQE---SKKLSTYFNVAYFAFCMGQLIALT 177
LI +LALYLVALGSGCLKPNIISHGADQFKK++ SKKLSTYFNVAYFAFC+G+LIALT
Sbjct: 148 LIFFLALYLVALGSGCLKPNIISHGADQFKKEDPKQSKKLSTYFNVAYFAFCIGELIALT 207
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVWVQTHSGMD+GFGVSAAAMAVGLI LI G F YRNK P+GSIFTP AQVFVAAITKR
Sbjct: 208 VLVWVQTHSGMDVGFGVSAAAMAVGLICLISGSFSYRNKPPKGSIFTPFAQVFVAAITKR 267
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDG--ANESPW 295
KQICPSN +LHG NN++++ V A S + NLLHTEKFRFLDKACI+VQDG A+ES W
Sbjct: 268 KQICPSNAQMLHGCHNNVSSH-VPATSTDASNLLHTEKFRFLDKACIRVQDGSEASESTW 326
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTV QVEQVKI++SV+PIF+CTIIFNTILAQLQTFSVQQGSAM+ +IT F+IPPASL
Sbjct: 327 RLCTVAQVEQVKILISVIPIFSCTIIFNTILAQLQTFSVQQGSAMNTRITKSFKIPPASL 386
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
Q+IPYI+LIFVVPLYE FVP A + T KDSGI+PLQRVGVGLF+ATFSMV+AA+IE+KR
Sbjct: 387 QSIPYIMLIFVVPLYETAFVPFARRITGKDSGITPLQRVGVGLFIATFSMVSAAVIERKR 446
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
RT+AL+ + LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF
Sbjct: 447 RTSALDYQETLSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 506
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GFYLSSLLVSLVNKITS +SS WLSDNDLNKD+LDLFYWLLA LSLINFFNYLFWS+
Sbjct: 507 GFYLSSLLVSLVNKITSSSSSGG--WLSDNDLNKDKLDLFYWLLAVLSLINFFNYLFWSK 564
Query: 536 WYSYNPSLSPTTTPHESHGEDLENQSLNNN 565
WYSYNPSLS S G+D+E+Q+ N++
Sbjct: 565 WYSYNPSLS----HDHSLGQDIESQNFNSS 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147827251|emb|CAN77701.1| hypothetical protein VITISV_011385 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/621 (74%), Positives = 509/621 (81%), Gaps = 58/621 (9%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
MTAA+FVLGLQAFEM AIAAVGNNLITYVFN+MHFPLSKSANIVTNFIGTVFLLSL GGF
Sbjct: 39 MTAAIFVLGLQAFEMMAIAAVGNNLITYVFNDMHFPLSKSANIVTNFIGTVFLLSLLGGF 98
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRP+ C M+ D D NC EAKGYKA
Sbjct: 99 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPAHCXMVLDED---NCSEAKGYKA 155
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCMGQLIALT 177
LI +LALYLVALGSGCLKPNIISHGADQF+K++SK KLS+YFN AYFAFCMG+L+ALT
Sbjct: 156 LIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYFNAAYFAFCMGELVALT 215
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVWVQTHSGMD+GFGVSAAAMA+GLISLI G VY NK PRGSIFTPIAQVFVAAITKR
Sbjct: 216 VLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGSIFTPIAQVFVAAITKR 275
Query: 238 KQICPSNTYILHGSQ---------------------------NNIATNRVLA-------- 262
KQICPSN+ +LHGSQ ++ATN+
Sbjct: 276 KQICPSNSGMLHGSQLPEQALASSNVGYRSEGMPILNQSWDLESLATNKCEVMKLFLYVT 335
Query: 263 ----ISPNNRNLLHTEKFRFLDKACIKVQDGANE----SPWKLCTVTQVEQVKIIMSVVP 314
IS ++ N + FL + K SPW+LCTVTQVEQVKII+SVVP
Sbjct: 336 IEAFISHHHLN----KTIGFLTRPASKFDKMERSDDVMSPWRLCTVTQVEQVKIIISVVP 391
Query: 315 IFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVF 374
IFACTIIFNTILAQLQTFSVQQGSAM+ ++ FQIPPASLQ+IPY++LIF+VPLYE VF
Sbjct: 392 IFACTIIFNTILAQLQTFSVQQGSAMNTRLIKGFQIPPASLQSIPYLMLIFLVPLYETVF 451
Query: 375 VPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQ 434
VP+A K T +DSGISPLQR+G+GLFVAT SMV+AAL+EKKRRT+AL+SN+ILSIFWIAPQ
Sbjct: 452 VPIARKITGRDSGISPLQRIGIGLFVATLSMVSAALVEKKRRTSALDSNRILSIFWIAPQ 511
Query: 435 FLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRT 494
FLIFGLSEMFTAVGLIEFFYKQS+EGMQSFLTAMTYCSYSFGF+LSSLLVSLVN+ITS
Sbjct: 512 FLIFGLSEMFTAVGLIEFFYKQSVEGMQSFLTAMTYCSYSFGFFLSSLLVSLVNRITSSH 571
Query: 495 SSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPTTTPHESHG 554
SSS GWL DNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPT+ H S+
Sbjct: 572 SSS-RGWLGDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPTSQ-HGSYA 629
Query: 555 EDLENQSLNNNISKHILRADN 575
EDLEN SLN+ SK I ADN
Sbjct: 630 EDLENHSLNS--SKQI-AADN 647
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120010|ref|XP_002331115.1| predicted protein [Populus trichocarpa] gi|222872843|gb|EEF09974.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/574 (73%), Positives = 491/574 (85%), Gaps = 9/574 (1%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA FVLGLQAFE+ AIAAVGNNLITYV NEMHFPLSK+AN VTNF+GT+F+L+L GG+
Sbjct: 37 MRAAAFVLGLQAFEIMAIAAVGNNLITYVINEMHFPLSKAANTVTNFVGTIFILALLGGY 96
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLG FWTMLIFGFVELSGFILLSVQAHLPQL+P CNMLTD + NC EAKG K+
Sbjct: 97 LSDSYLGCFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMLTDGE---NCVEAKGVKS 153
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALT 177
LI ++ALYLVALGSGC+KPN+I+HG DQF + ++SKKLSTYFN AYFAF MG+L ALT
Sbjct: 154 LIFFVALYLVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYFNAAYFAFSMGELFALT 213
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
LLVW+QTHSGMD+GFGVSAA MA+GLISL+ G YRNK P+GSIFTPIAQVFVAAI KR
Sbjct: 214 LLVWIQTHSGMDVGFGVSAAVMAMGLISLVSGNLYYRNKPPQGSIFTPIAQVFVAAILKR 273
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGAN--ESPW 295
KQICPSN +LHGSQN++ N ++A S ++ +L HT++FRFLDKACIK++DG N ESPW
Sbjct: 274 KQICPSNPQMLHGSQNSVLDNGIVAPSADSGSLAHTQRFRFLDKACIKIEDGTNIKESPW 333
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LC+VTQVEQVKI++S +PIFACTI+FNTILAQLQTFSVQQG AMD ++ F IPPASL
Sbjct: 334 RLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGGAMDTQLAKSFHIPPASL 393
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
Q+IPYI+LI VVPLY+ FVP+A K T +SGISPLQR+G GLF ATFSMV+AA++EKKR
Sbjct: 394 QSIPYIILIIVVPLYDTFFVPLARKITGHESGISPLQRIGAGLFFATFSMVSAAIMEKKR 453
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
R AA++SN+ILSIFWI PQFLIFGLSEM TAVGLIEFFYKQSL+GMQ+FLTA+TYCSYSF
Sbjct: 454 RDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSF 513
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GFYLSSLLVSLVNKITS +SSS GWLSDNDLNKDRLDLFYW+LA LS +NF +YLFW+R
Sbjct: 514 GFYLSSLLVSLVNKITS-SSSSNQGWLSDNDLNKDRLDLFYWMLAVLSFLNFLSYLFWAR 572
Query: 536 WYSYNPSLSPTTTPHESHGEDLENQSLNNNISKH 569
W+SY+P TTT E+ G+D N N SKH
Sbjct: 573 WHSYSPISLLTTTQQETLGDDHLNNYGFINSSKH 606
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129508|ref|XP_002328734.1| predicted protein [Populus trichocarpa] gi|222839032|gb|EEE77383.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/575 (73%), Positives = 491/575 (85%), Gaps = 13/575 (2%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA FVLGLQAFE+ AIAAVGNNLITYV NEMHF LSKSANIVTNF+GT+F+L+L GG+
Sbjct: 37 MRAAAFVLGLQAFEIMAIAAVGNNLITYVINEMHFSLSKSANIVTNFVGTIFILALLGGY 96
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLG FWTMLIFGFVELSGFILLSVQAHLPQL+P CNMLT G +NC EAKG+K
Sbjct: 97 LSDSYLGCFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMLT---GGENCIEAKGFKT 153
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALT 177
LI ++ALY+VALGSGC+KPN+I+HG DQF + ++SKKLSTYFN AYFAF MG+L ALT
Sbjct: 154 LIFFVALYMVALGSGCVKPNMIAHGGDQFNQSNPKQSKKLSTYFNAAYFAFSMGELFALT 213
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
LLVWVQT+SGMD+GFGVSAA MA+GLISL+ G YRNK+P+GSIFTPIAQVFVAA+ KR
Sbjct: 214 LLVWVQTNSGMDVGFGVSAAVMAMGLISLVSGTLYYRNKAPQGSIFTPIAQVFVAAMFKR 273
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGAN--ESPW 295
KQ CP+N +LHGSQN++ +N ++ S + L+HT++FRFLDKACIKV+DG+N ESPW
Sbjct: 274 KQTCPANPQMLHGSQNSVPSNGLVDPSSDPCRLVHTQRFRFLDKACIKVEDGSNRKESPW 333
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LC+VTQVEQVKI++S +PIFACTI+FNTILAQLQTFSVQQGSAMD ++T F IPPASL
Sbjct: 334 RLCSVTQVEQVKILISAIPIFACTIVFNTILAQLQTFSVQQGSAMDTQLTKSFHIPPASL 393
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
Q+IPYI+LIFVVPLYE FVP A K T +SGISPLQR+G GLF TFSMV+AA++EKKR
Sbjct: 394 QSIPYIILIFVVPLYETFFVPFARKITGHESGISPLQRIGAGLFFVTFSMVSAAIMEKKR 453
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
R AA++SN+ILSIFWI PQFLIFGLSEM TAVGLIEFFYKQSL+GMQ+FLTA+TYCSYSF
Sbjct: 454 RDAAVDSNKILSIFWITPQFLIFGLSEMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSF 513
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GFYLSSLLVSLVNK+TS +SS+ GWLSDNDLNKDRLDLFYW+LA L +NF NYLFW+R
Sbjct: 514 GFYLSSLLVSLVNKVTS-SSSTNKGWLSDNDLNKDRLDLFYWMLAVLGFLNFLNYLFWAR 572
Query: 536 WYSYNPSLSPTTTPHESHGEDLENQSLNNNISKHI 570
WYSY+P+ TT +HG+D N SKH+
Sbjct: 573 WYSYSPTSVSITTQQGTHGDDYG----FTNSSKHV 603
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734747|emb|CBI16981.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/552 (79%), Positives = 476/552 (86%), Gaps = 42/552 (7%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
MTAA+FVLGLQAFEM AIAAVGNNLITYVFN+MHFPLSKSANIVTNFIGTVFLLSL GGF
Sbjct: 22 MTAAIFVLGLQAFEMMAIAAVGNNLITYVFNDMHFPLSKSANIVTNFIGTVFLLSLLGGF 81
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRP+ C M+ D D NC EAKGYKA
Sbjct: 82 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPAHCTMVLDED---NCSEAKGYKA 138
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQE---SKKLSTYFNVAYFAFCMGQLIALT 177
LI +LALYLVALGSGCLKPNIISHGADQF+K++ SKKLS+YFN AYFAFCMG+L+ALT
Sbjct: 139 LIFFLALYLVALGSGCLKPNIISHGADQFRKEDSKQSKKLSSYFNAAYFAFCMGELVALT 198
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVWVQTHSGMD+GFGVSAAAMA+GLISLI G VY NK PRGSIFTPIAQVFVAAITKR
Sbjct: 199 VLVWVQTHSGMDVGFGVSAAAMAMGLISLISGTLVYMNKPPRGSIFTPIAQVFVAAITKR 258
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDG--ANESPW 295
KQICPSN+ +LHGSQ + LA S N RNLLHTEKFRFLDKACIKVQDG +ESPW
Sbjct: 259 KQICPSNSGMLHGSQ---LPEQALA-SSNVRNLLHTEKFRFLDKACIKVQDGTQTSESPW 314
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTVTQVEQVKII+SVVPIFACTIIFNTILAQLQTFSVQQGSAM+ ++ FQIPPASL
Sbjct: 315 RLCTVTQVEQVKIIISVVPIFACTIIFNTILAQLQTFSVQQGSAMNTRLIKGFQIPPASL 374
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
Q+IPY++LIF+VPLYE VFVP+A K T +DSGISPLQR+G+GLFVAT SM
Sbjct: 375 QSIPYLMLIFLVPLYETVFVPIARKITGRDSGISPLQRIGIGLFVATLSM---------- 424
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
FLIFGLSEMFTAVGLIEFFYKQS+EGMQSFLTAMTYCSYSF
Sbjct: 425 -------------------FLIFGLSEMFTAVGLIEFFYKQSVEGMQSFLTAMTYCSYSF 465
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GF+LSSLLVSLVN+ITS + SS+ GWL DNDLNKDRLDLFYWLLAALSLINFFNYLFWSR
Sbjct: 466 GFFLSSLLVSLVNRITS-SHSSSRGWLGDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 524
Query: 536 WYSYNPSLSPTT 547
WYSYNPSLSPT+
Sbjct: 525 WYSYNPSLSPTS 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465269|ref|XP_002268504.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/571 (72%), Positives = 473/571 (82%), Gaps = 23/571 (4%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGF 60
M AA FVLGLQAFE+ IAAVGNNLITYV NEMHFPLS SANIVTNFIGTVFLL+L GG
Sbjct: 44 MRAASFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSTSANIVTNFIGTVFLLALLGGC 103
Query: 61 LSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKA 120
+SDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQL+P CNM+TD + C EAKG+KA
Sbjct: 104 ISDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMVTDGE---RCVEAKGFKA 160
Query: 121 LILYLALYLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALT 177
I YLALYLVALGSGC+KPN+++HGADQF + ++SK LS+YFN AYFAF +G+LIALT
Sbjct: 161 FIFYLALYLVALGSGCVKPNMVAHGADQFNRDSPKQSKSLSSYFNAAYFAFSIGELIALT 220
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVWVQTHSGMD+GFGVSAAAMA+GLISL+ G +YRNK P+GSI TPIAQVFVAAI KR
Sbjct: 221 VLVWVQTHSGMDVGFGVSAAAMAMGLISLVSGTLLYRNKPPQGSILTPIAQVFVAAILKR 280
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGAN--ESPW 295
KQ CP + ++LHGSQNN+ V T KF+FLDKACIK+QDG N ESPW
Sbjct: 281 KQRCPPSPHMLHGSQNNVLVGSV-----------ATSKFKFLDKACIKIQDGNNVKESPW 329
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTV QV+QVKI++SV+PIFACTI+FNTILAQ+QTFSVQQGS+M+ ++T F IPPASL
Sbjct: 330 RLCTVAQVQQVKILLSVIPIFACTIVFNTILAQMQTFSVQQGSSMNTQLTKNFHIPPASL 389
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
QAIPYI+LIF+VPLY+ FVP A +FT SGISPLQR+G GLFVATFSMVAAA++E KR
Sbjct: 390 QAIPYIILIFLVPLYDAFFVPFARRFTGNVSGISPLQRIGFGLFVATFSMVAAAIMEDKR 449
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF 475
R AA+N +ILSIFWI PQFLIFGLSEMFTAVGLIEFFYKQS GMQ+FLTA+TY SYSF
Sbjct: 450 RNAAVNEKKILSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSSTGMQAFLTAITYFSYSF 509
Query: 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535
GFY SS+LVSLVNKITS SSS+ GWL D+DLNKDRLDLFYWLLA LS INF NYLFW+
Sbjct: 510 GFYFSSVLVSLVNKITS--SSSSDGWLKDDDLNKDRLDLFYWLLAVLSFINFLNYLFWAG 567
Query: 536 -WYSYNPSLSPTTTPHESHGEDLENQSLNNN 565
WYSY PS S ++HGE+ Q N++
Sbjct: 568 WWYSYKPS-SSVPLQSDAHGEEFMGQGFNSS 597
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543362|ref|XP_003540130.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/585 (69%), Positives = 472/585 (80%), Gaps = 38/585 (6%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A+ FVLGLQA E+ AIAAVGNNLITYV NEMHF LSKSAN+VTNF+GT+FLL+L GG+LS
Sbjct: 52 ASAFVLGLQACEIMAIAAVGNNLITYVINEMHFSLSKSANVVTNFVGTIFLLALLGGYLS 111
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
DSYLGSFWT+LIFGFVELSGFILLSVQAHLPQL+P PCNM D ++C EAKG+KALI
Sbjct: 112 DSYLGSFWTILIFGFVELSGFILLSVQAHLPQLKPPPCNMFFDG---EHCTEAKGFKALI 168
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQ---ESKKLSTYFNVAYFAFCMGQLIALTLL 179
+LA+YLVALGSGC+KPN+I+HGADQF ++ + KKLSTYFN AYFAF +G+L+ALT+L
Sbjct: 169 FFLAIYLVALGSGCVKPNMIAHGADQFNQENPKQLKKLSTYFNAAYFAFSVGELVALTIL 228
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VWVQTHSGMD GFGVSAA M +GLISLI G YRNK P+GSIF P+AQVFVAAI KRKQ
Sbjct: 229 VWVQTHSGMDAGFGVSAAVMTMGLISLICGTLYYRNKPPQGSIFIPVAQVFVAAILKRKQ 288
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGA-------NE 292
ICPSN +LHGSQ+N+A HT KFRFLDKACI+VQ G E
Sbjct: 289 ICPSNPQMLHGSQSNVARK-------------HTNKFRFLDKACIRVQQGTGSSSNDTKE 335
Query: 293 SPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPP 352
SPW LC+V QVEQ KI++SV+PIFA TI+FNTILAQLQTFSVQQGS+MD +T F +PP
Sbjct: 336 SPWILCSVAQVEQAKILLSVIPIFASTIVFNTILAQLQTFSVQQGSSMDTHLTKSFHVPP 395
Query: 353 ASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIE 412
ASLQ+IPYILLI VVPLY+ FVP A K T +SGISPLQR+G GLF+ATFSM++AAL+E
Sbjct: 396 ASLQSIPYILLIVVVPLYDSFFVPFARKITGHESGISPLQRIGFGLFLATFSMISAALVE 455
Query: 413 KKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCS 472
KKRR AA+N N+ +SIFWI PQFLIFGLSEMFTAVGLIEFFYKQSL+GMQ+F TA+TYCS
Sbjct: 456 KKRRDAAVNLNETISIFWITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQTFFTAITYCS 515
Query: 473 YSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLF 532
YSFGFYLSSLLVS+VN I+S SSS GWL DNDLNKD+LD FYWLLAALS +NF NYLF
Sbjct: 516 YSFGFYLSSLLVSMVNNISS--SSSTGGWLHDNDLNKDKLDFFYWLLAALSFLNFLNYLF 573
Query: 533 WSRWYSYNPSLSPTTTPHESHGEDLENQSLN--NNISKHILRADN 575
WSRWYSY PS +S G+ N+S+N + SK+ DN
Sbjct: 574 WSRWYSYKPS--------QSQGDTNANESINLFGHSSKNYSGDDN 610
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832226|emb|CAN63859.1| hypothetical protein VITISV_037742 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/564 (72%), Positives = 467/564 (82%), Gaps = 26/564 (4%)
Query: 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG 67
+GLQAFE+ IAAVGNNLITYV NEMHFPLS SANIVTNFIGTVFLL+L GG +SDSYLG
Sbjct: 77 VGLQAFEIMGIAAVGNNLITYVINEMHFPLSTSANIVTNFIGTVFLLALLGGCISDSYLG 136
Query: 68 SFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLAL 127
SFWTMLIFGFVELSGFILLSVQAHLPQL+P CNM+TD + C EAKG+KA I YLAL
Sbjct: 137 SFWTMLIFGFVELSGFILLSVQAHLPQLKPPQCNMVTDGE---RCVEAKGFKAFIFYLAL 193
Query: 128 YLVALGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184
YLVALGSGC+KPN+++HGADQF + ++SK LS+YFN AYFAF +G+LIALT+LVWVQT
Sbjct: 194 YLVALGSGCVKPNMVAHGADQFNRDSPKQSKSLSSYFNAAYFAFSIGELIALTVLVWVQT 253
Query: 185 HSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSN 244
HSGMD+GFGVSAAAMA+GLISL+ G +YRNK P+GSI TPIAQVFVAAI KRKQ CP
Sbjct: 254 HSGMDVGFGVSAAAMAMGLISLVSGTLLYRNKPPQGSILTPIAQVFVAAILKRKQRCP-- 311
Query: 245 TYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGAN--ESPWKLCTVTQ 302
++LHGSQNN+ V T KF+FLDKACIK+QDG N ESPW+LCTV Q
Sbjct: 312 -HMLHGSQNNVLVGSV-----------ATSKFKFLDKACIKIQDGNNVKESPWRLCTVAQ 359
Query: 303 VEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYIL 362
V+QVKI++SV+PIFACTI+FNTILAQ+QTFSVQQGS+M+ ++T F IPPASLQAIPYI+
Sbjct: 360 VQQVKILLSVIPIFACTIVFNTILAQMQTFSVQQGSSMNTQLTKNFHIPPASLQAIPYII 419
Query: 363 LIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNS 422
LIF+VPLY+ FVP A +FT SGISPLQR+G GLFVATFSMVAAA++E KRR AA+N
Sbjct: 420 LIFLVPLYDAFFVPFARRFTGNVSGISPLQRIGFGLFVATFSMVAAAIMEDKRRNAAVNE 479
Query: 423 NQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482
+ILSIFWI PQFLIFGLSEMFTAVGLIEFFYKQS GMQ+FLTA+TY SYSFGFY SS+
Sbjct: 480 KKILSIFWITPQFLIFGLSEMFTAVGLIEFFYKQSSTGMQAFLTAITYFSYSFGFYFSSV 539
Query: 483 LVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR-WYSYNP 541
LVSLVNKITS SSS+ GWL D+DLNKDRLDLFYWLLA LS INF NYLFW+ WYSY P
Sbjct: 540 LVSLVNKITS--SSSSDGWLKDDDLNKDRLDLFYWLLAVLSFINFLNYLFWAGWWYSYKP 597
Query: 542 SLSPTTTPHESHGEDLENQSLNNN 565
S S ++HGE+ Q N++
Sbjct: 598 S-SSVPLQSDAHGEEFMGQGFNSS 620
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297851778|ref|XP_002893770.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297339612|gb|EFH70029.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/558 (74%), Positives = 464/558 (83%), Gaps = 15/558 (2%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
AA+FVLG QAFEM AIAAVGNNLITYVFNEMHFPLSKSAN+VTNFIGTVFLLSL GGFLS
Sbjct: 43 AALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLS 102
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
DSYLGSF TML FG +E+SGFILLSVQAHLP+LRP CNM T +C EA GYKA+
Sbjct: 103 DSYLGSFRTMLFFGVIEISGFILLSVQAHLPELRPPECNM----KSTIHCVEANGYKAVT 158
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182
LY AL LVALGSGCLKPNIISHGA+QF++++ +KLS++FN AYFAF MGQLIALTLLVWV
Sbjct: 159 LYAALCLVALGSGCLKPNIISHGANQFQRKDLRKLSSFFNAAYFAFSMGQLIALTLLVWV 218
Query: 183 QTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242
QTHSGMD+GFGVSAA MA G+ISL+ G YRNK PRGSIFTPIAQVFVAAITKRKQICP
Sbjct: 219 QTHSGMDVGFGVSAAVMAAGMISLVAGTNFYRNKPPRGSIFTPIAQVFVAAITKRKQICP 278
Query: 243 SNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQ 302
SN +LH ++ RV + LLH+ KF+FLDKACIK Q A ESPW+LCT+ Q
Sbjct: 279 SNPNMLHQPSTDLV--RV-------KPLLHSNKFKFLDKACIKTQGKAMESPWRLCTIEQ 329
Query: 303 VEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYIL 362
V QVKI++SV+PIFACTIIFNTILAQLQTFSVQQGS+M+ IT FQIPPASLQAIPYI+
Sbjct: 330 VHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYII 389
Query: 363 LIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNS 422
LIF VPLYE FVP+A KF DSGISPLQR+G GLF+ATFSMVAAAL+EKKRR + L
Sbjct: 390 LIFFVPLYETFFVPLARKFAGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ 449
Query: 423 NQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482
N LSIFWIAPQFLIFGLSEMFTAVGL+EFFYKQS + MQSFLTAMTYCSYSFGFYLSS+
Sbjct: 450 NATLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSV 509
Query: 483 LVSLVNKITSRT-SSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNP 541
LVS VN++TS S + GWL DNDLNKDRLD FYWLLA+LS INFFNYLFWSRWYS +P
Sbjct: 510 LVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDP 569
Query: 542 SLSPTTTPHESHGEDLEN 559
S + + S EDLEN
Sbjct: 570 SATHHSAEVNSL-EDLEN 586
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| TAIR|locus:2006907 | 601 | AT1G33440 [Arabidopsis thalian | 0.961 | 0.920 | 0.656 | 1.6e-191 | |
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.913 | 0.888 | 0.642 | 4.3e-180 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.900 | 0.913 | 0.352 | 1.3e-84 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.911 | 0.919 | 0.348 | 5e-83 | |
| TAIR|locus:2196739 | 585 | NRT1:2 "AT1G69850" [Arabidopsi | 0.907 | 0.892 | 0.358 | 6.4e-83 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.899 | 0.907 | 0.335 | 7.9e-78 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.913 | 0.897 | 0.338 | 1e-77 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.904 | 0.872 | 0.323 | 9e-77 | |
| TAIR|locus:2089935 | 590 | AT3G21670 [Arabidopsis thalian | 0.890 | 0.867 | 0.340 | 1.9e-76 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.885 | 0.862 | 0.333 | 8.1e-76 |
| TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1856 (658.4 bits), Expect = 1.6e-191, P = 1.6e-191
Identities = 372/567 (65%), Positives = 425/567 (74%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXX 62
AA+FVLG QAFEM AIAAVGNNLITYVFNEMHFPLSKSAN+VTNFIGTV
Sbjct: 44 AALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLS 103
Query: 63 XXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXX 122
TML+FG +E+SGFILLSVQAHLP+LRP CNM + T +C EA G
Sbjct: 104 DSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTI---HCVEANGYKAAT 160
Query: 123 XXXXXXXXXXGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182
GSGCLKPNIISHGA+QF++++ +KLS++FN AYFAF MGQLIALTLLVWV
Sbjct: 161 LYTALCLVALGSGCLKPNIISHGANQFQRKDLRKLSSFFNAAYFAFSMGQLIALTLLVWV 220
Query: 183 QTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242
QTHSGMD+GFGVSAA MA G+ISL+ G YRNK P GSIFTPIAQVFVAAITKRKQICP
Sbjct: 221 QTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRKQICP 280
Query: 243 SNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQ 302
SN ++H ++ + + P LLH+ KFRFLDKACIK Q A ESPW+LCT+ Q
Sbjct: 281 SNPNMVHQPSTDL-----VRVKP----LLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQ 331
Query: 303 VEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYIL 362
V QVKI++SV+PIFACTIIFNTILAQLQTFSVQQGS+M+ IT FQIPPASLQAIPYI+
Sbjct: 332 VHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYII 391
Query: 363 LIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNS 422
LIF VPLYE FVP+A K T DSGISPLQR+G GLF+ATFSMVAAAL+EKKRR + L
Sbjct: 392 LIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ 451
Query: 423 NQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCXXXXXXXXXXX 482
N +LSIFWIAPQFLIFGLSEMFTAVGL+EFFYKQS + MQSFLTAMTYC
Sbjct: 452 NVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSV 511
Query: 483 XXXXXNKITSRTSSSA-HGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNP 541
N++TS S GWL DNDLNKDRLD FYWLLA+LS INFFNYLFWSRWYS +P
Sbjct: 512 LVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWYSCDP 571
Query: 542 SLSPTTTPHESHGEDLENQSLNNNISK 568
S + + S E LEN + ++ ++
Sbjct: 572 SATHHSAEVNSL-EALENGEIKDSTTE 597
|
|
| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1748 (620.4 bits), Expect = 4.3e-180, P = 4.3e-180
Identities = 347/540 (64%), Positives = 412/540 (76%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXX 60
M AA+FVLGLQAFE+ IAAVGNNLITYV NEMHFPLSK+ANIVTNF+GT+
Sbjct: 45 MRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLGGY 104
Query: 61 XXXXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXX 120
WT++IFGFVELSGFILLSVQAHLPQL+P CN L D Q C+EAKG
Sbjct: 105 LSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLID----QTCEEAKGFKA 160
Query: 121 XXXXXXXXXXXXGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALT 177
GSGC+KPN+I+HGADQF + ++SK+LS+YFN AYFAF MG+LIALT
Sbjct: 161 MIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALT 220
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
LLVWVQTHSGMDIGFGVSAAAM +G+ISL+ G +RNK PR SIFTPIA V VAAI KR
Sbjct: 221 LLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKR 280
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD-GANESPWK 296
K PS+ +LHG +++A + V P++ L HT +FRFLDKACIK+QD ESPW+
Sbjct: 281 KLASPSDPRMLHGD-HHVANDVV----PSS-TLPHTPRFRFLDKACIKIQDTNTKESPWR 334
Query: 297 LCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQ 356
LCTVTQVEQVK ++S+VPIFA TI+FNTILAQLQTFSVQQGS+M+ +++N F IPPASLQ
Sbjct: 335 LCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQ 394
Query: 357 AIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRR 416
AIPYI+LIF+VPLY+ VP A K T +SGI PL R+G+GLF++TFSMV+AA++EKKRR
Sbjct: 395 AIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRR 454
Query: 417 TAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCXXXXX 476
+++ +ILSIFWI PQFLIFG+SEMFTAVGLIEFFYKQS +GM+SFL A+TYC
Sbjct: 455 DSSVLDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFG 514
Query: 477 XXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536
NKITS TS + GWL +NDLNKDRLDLFYWLLA LSL+NF +YLFWSRW
Sbjct: 515 FYFSSVLVSVVNKITS-TSVDSKGWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSRW 573
|
|
| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 194/551 (35%), Positives = 294/551 (53%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXX 60
M AA FVL ++ E A A +NL+ Y+ N MH L++S++ VT F+ T
Sbjct: 31 MLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMATAFLLALLGGF 90
Query: 61 XXXXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXX 120
LI +E G ILL++QA P L P PC + C+ G
Sbjct: 91 LADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCK----SSAALRCEVVGGSKA 146
Query: 121 XXXXXXXXXXXXGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCM--GQLIA 175
G G +K ++ SHGA+QF + + K+ ST+FN Y+ FC+ G L+A
Sbjct: 147 AFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFN--YYVFCLSCGALVA 204
Query: 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAIT 235
+T +VW++ + G + GFGVS ++ + ++ + G Y+NK PRGS T I +V +AA
Sbjct: 205 VTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVLLAASI 264
Query: 236 KRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPW 295
C S T H + + + +P+ ++L T L+KA +G W
Sbjct: 265 VS---CSSKTSSNHFTSREVQSEHEEK-TPS-QSL--TNSLTCLNKAI----EGKTHHIW 313
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
CTV QVE VKI++ ++PIF CTI+ N LAQL T+SV Q + M+ KI N F +P ASL
Sbjct: 314 LECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVN-FNVPSASL 372
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
P + ++ + P Y+ + +P A K TK + GI+ LQR+GVGL ++ +M AAL+E KR
Sbjct: 373 PVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432
Query: 416 RTAA-----LNSNQILSI--FWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468
+ A L+S + L I WIA Q+L G +++FT GL+EFF+ ++ M+S T++
Sbjct: 433 KQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATSL 492
Query: 469 TYCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF 528
++ N++T S WL + LN++RLDLFYWL+ LS++NF
Sbjct: 493 SWASLALGYYLSSVMVPIVNRVTKSAGQSP--WLGEK-LNRNRLDLFYWLMCVLSVVNFL 549
Query: 529 NYLFWSRWYSY 539
+YLFW++ Y Y
Sbjct: 550 HYLFWAKRYKY 560
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 193/554 (34%), Positives = 303/554 (54%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXX 62
A F+LG + E A +G NL+ Y+ + ++ + +AN VTN+ GT
Sbjct: 30 ACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIA 89
Query: 63 XXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXX 122
WT+ F F+ +SG LL++ A +P L+P CN DT + Q A
Sbjct: 90 DAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN--ADTCHPNSSQTA------V 141
Query: 123 XXXXXXXXXXGSGCLKPNIISHGADQF-KKQESKKL--STYFNVAYFAFCMGQLIALTLL 179
G+G +KP + S GADQF + E++K+ S++FN YF+ +G LIA T+L
Sbjct: 142 FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVL 201
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VW+Q + G GFGV AM + + FG YR + P GS T I QV VAA K
Sbjct: 202 VWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISV 261
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQ-DGANE---SPW 295
P + +L + ++ + + +R L+HT+ +F DKA ++ Q D + +PW
Sbjct: 262 KVPEDKSLLFETADDESNIK------GSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPW 315
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LC+VTQVE++K I++++P++A I+F T+ +Q+ T V QG+ MD + F+IP ASL
Sbjct: 316 RLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASL 375
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
+ ++F P+Y+ +P+A KFT+ + G + LQR+G+GL V+ F+M+ A ++E R
Sbjct: 376 SLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVR 435
Query: 416 ----RTA-ALNSNQI-LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMT 469
+T A + QI +SIFW PQ+L+ G +E+FT +G +EFFY Q+ + M+S +A++
Sbjct: 436 LDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALS 495
Query: 470 YCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFN 529
KIT + GW+ DN LN+ LD F++LLA LS +NF
Sbjct: 496 LTTVALGNYLSTVLVTVVMKITKKNGKP--GWIPDN-LNRGHLDYFFYLLATLSFLNFLV 552
Query: 530 YLFWSRWYSYNPSL 543
YL+ S+ Y Y ++
Sbjct: 553 YLWISKRYKYKKAV 566
|
|
| TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 203/567 (35%), Positives = 299/567 (52%)
Query: 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXX 60
M AA FVL ++ E A A +NL+ Y+ MH SKSAN VTNF+GT
Sbjct: 29 MLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFMGTAFLLALLGGF 88
Query: 61 XXXXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXX 120
LI +E G I+L++QA P L P C+ T C+E G
Sbjct: 89 LSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPT-------CEEVSGSKA 141
Query: 121 XXXXXXXXXXXXGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCM--GQLIA 175
G G +K ++ SHGA+QF + K + ST+FN YF FC+ G L+A
Sbjct: 142 AMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFN--YFVFCLACGALVA 199
Query: 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAIT 235
+T +VW++ + G + GFGVS A+ V ++ + G YRNK P GS T I +V +AA
Sbjct: 200 VTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLAASV 259
Query: 236 K------------RKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKAC 283
K + PSN + G + + + L P L + + +
Sbjct: 260 KCCSSGSSSNAVASMSVSPSNHCVSKGKKE-VESQGELE-KPRQEEAL-PPRAQLTNS-- 314
Query: 284 IKVQDGA-NESP-WKL--CTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSA 339
+KV +GA +E P +L CTV QVE VKI++ ++PIFACTI+ N LAQL TFSVQQ ++
Sbjct: 315 LKVLNGAADEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQAAS 374
Query: 340 MDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLF 399
M+ KI + +IPPASL P + ++ + P+Y+ + +P A K TK ++G++ LQR+GVGL
Sbjct: 375 MNTKIGS-LKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGLV 433
Query: 400 VATFSMVAAALIEKKRRTAA-----LNSNQILSI--FWIAPQFLIFGLSEMFTAVGLIEF 452
++ +M AAL+E KR+ A L+S + L + WIA Q+L G +++FT GL+E+
Sbjct: 434 LSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLEY 493
Query: 453 FYKQSLEGMQSFLTAMTYCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRL 512
F+ ++ M+S T++++ N IT SS WL +N+ +L
Sbjct: 494 FFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITG--SSGNTPWLRGKSINRYKL 551
Query: 513 DLFYWLLAALSLINFFNYLFWSRWYSY 539
D FYWL+ LS NF +YLFW+ Y Y
Sbjct: 552 DYFYWLMCVLSAANFLHYLFWAMRYKY 578
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 185/552 (33%), Positives = 293/552 (53%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXX 62
A F+LG + E A + NLI Y+ +M+ ++ V+N+ GT
Sbjct: 31 ACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIA 90
Query: 63 XXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXX 122
WT+ F + ++G LL++ A +P L P+ C+ G + C G
Sbjct: 91 DAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CS------G-ETCHATAGQTAIT 142
Query: 123 XXXXXXXXXXGSGCLKPNIISHGADQF-----KKQESKKLSTYFNVAYFAFCMGQLIALT 177
G+G +KP + S GADQF K++ESK S++FN YF +G +IA +
Sbjct: 143 FIALYLIAL-GTGGIKPCVSSFGADQFDDTDEKEKESK--SSFFNWFYFVINVGAMIASS 199
Query: 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237
+LVW+Q + G G GV AMA+ ++ G YR + P GS T + QV VA+ K
Sbjct: 200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259
Query: 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD----GANES 293
K P + +L+ +Q+ A + ++ +R L HT+ F DKA ++ + A S
Sbjct: 260 KVKIPEDESLLYENQD--AESSIIG----SRKLEHTKILTFFDKAAVETESDNKGAAKSS 313
Query: 294 PWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPA 353
WKLCTVTQVE++K ++ ++PI+A I+F ++ +Q+ T V QG+ +D + F+IP A
Sbjct: 314 SWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSA 373
Query: 354 SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEK 413
SL + ++F P+Y+ + VP A K+T + G + LQR+G+GL ++ FSMV+A ++E
Sbjct: 374 SLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEV 433
Query: 414 KR----RTAAL-NSNQI-LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTA 467
R +T L N I ++IFW PQ+ + G +E+FT +G +EFFY Q+ + M+S +A
Sbjct: 434 ARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 493
Query: 468 MTYCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINF 527
++ K+T S GW++ N LN LD F+WLLA LS +NF
Sbjct: 494 LSLTAIAFGNYLSTFLVTLVTKVTR--SGGRPGWIAKN-LNNGHLDYFFWLLAGLSFLNF 550
Query: 528 FNYLFWSRWYSY 539
YL+ ++WY+Y
Sbjct: 551 LVYLWIAKWYTY 562
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| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 188/556 (33%), Positives = 286/556 (51%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXX 62
A F+LG + E A + NLITY+ ++H +A VT + GT
Sbjct: 47 ACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLA 106
Query: 63 XXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXX 122
WT+ F + G L++ A +P L+P+ C + D C A
Sbjct: 107 DAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC--IGDF-----CPSATPAQYAM 159
Query: 123 XXXXXXXXXXGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCMGQLIALTLL 179
G+G +KP + S GADQF +S+ + +++FN YF+ +G L++ +LL
Sbjct: 160 FFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLL 219
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VW+Q + G +GFG+ M + + S FG +YR + P GS T I+QV VA+ K
Sbjct: 220 VWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSV 279
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACI----KVQDGANESPW 295
P + +L+ +Q+ N +A +R + HT+ ++LDKA + + + G + W
Sbjct: 280 KVPEDATLLYETQDK---NSAIA---GSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSW 333
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+LCTVTQVE++KI++ + PI+A IIF+ + AQ+ T VQQG AM+ KI + FQ+PPA+L
Sbjct: 334 RLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGS-FQLPPAAL 392
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
+I VPLY+ VP+A KFT D G + +QR+G+GLFV+ M AAA++E R
Sbjct: 393 GTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIR 452
Query: 416 RTAALNSNQI-------LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468
A + + +S+ W PQ+ I G +E+F +G +EFFY QS + M+S +A+
Sbjct: 453 LHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSAL 512
Query: 469 TYCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF 528
T+R GW+SDN LN LD F+WLLA LSL+N
Sbjct: 513 ALLTNALGNYLSSLILTLVTYFTTRNGQE--GWISDN-LNSGHLDYFFWLLAGLSLVNMA 569
Query: 529 NYLFWSRWYSYNPSLS 544
Y F + Y + S
Sbjct: 570 VYFFSAARYKQKKASS 585
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 179/554 (32%), Positives = 285/554 (51%)
Query: 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXXXXX 65
F+ + E A+ N+I+Y+ ++H PL+K+AN +TNF GT
Sbjct: 32 FIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLGAFIADSF 91
Query: 66 XXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXXXXX 125
WT+ + G LL++ A +P LRP PC G + C A
Sbjct: 92 AGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK------GEEVCVVADTAQLSILYV 145
Query: 126 XXXXXXXGSGCLKPNIISHGADQFKKQE---SKKLSTYFNVAYFAFCMGQ--LIALTLLV 180
GSG ++P +++ GADQF + + + K YFN ++ FCMG L+A+T+LV
Sbjct: 146 ALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN--WYYFCMGAAVLLAVTVLV 203
Query: 181 WVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240
W+Q + G +G G+ AM + +I+ + G +YR+ P GS FT + QV VAA KRK
Sbjct: 204 WIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLR 263
Query: 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD-----GANESPW 295
S+ +L+ + A IS + L HT+ FLDKA I ++ G + W
Sbjct: 264 MVSDPSLLYFNDEIDAP-----ISLGGK-LTHTKHMSFLDKAAIVTEEDNLKPGQIPNHW 317
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
+L TV +VE++K ++ + PI A I+ T AQ TFS+QQ M+ +TN FQIP S+
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
+ ++ + Y+ VFV VA KFT + GI+ L R+G+G ++ + + A +E KR
Sbjct: 378 SVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKR 437
Query: 416 RTAALNSNQI--------LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTA 467
++ A+ + +S W+ PQ+ + G++E F ++G +EFFY Q+ E M+S TA
Sbjct: 438 KSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATA 497
Query: 468 MTYCXXXXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINF 527
+ + +K +++ S WL DN+LN+ RL+ FYWL+ L +N
Sbjct: 498 LFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEYFYWLITVLQAVNL 555
Query: 528 FNYLFWSRWYSYNP 541
YL+ ++ Y+Y P
Sbjct: 556 VYYLWCAKIYTYKP 569
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| TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 186/546 (34%), Positives = 279/546 (51%)
Query: 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXXX 63
A +LG + E + + NL+TY+ ++H +KSA IVTNF+GT+
Sbjct: 36 AGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATIVTNFMGTLNLLGLLGGFLAD 95
Query: 64 XXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXXX 123
+ I V G +LL+V + +RP C+ C EA G
Sbjct: 96 AKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDFRRLH--HQCIEANGHQLALL 153
Query: 124 XXXXXXXXXGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALTLLV 180
G G +K N+ G+DQF +E K++ +FN YF+ +G L A+ LV
Sbjct: 154 YVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFNRFYFSISVGSLFAVIALV 213
Query: 181 WVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240
+VQ + G G+G+SAA M V I L+ G YR K P+GS FT I +V A KRK+
Sbjct: 214 YVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSPFTTIWRVGFLAWKKRKES 273
Query: 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANES------- 293
P++ +L+G N P HTE + LDKA I + + S
Sbjct: 274 YPAHPSLLNGYDNTTV--------P------HTEMLKCLDKAAISKNESSPSSKDFEEKD 319
Query: 294 PWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPA 353
PW + TVTQVE+VK++M +VPI+A I+F TI +Q+ TF+V+Q + MD K+ + F +P
Sbjct: 320 PWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLGS-FTVPAG 378
Query: 354 SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEK 413
S A + ++ L E VFVP+ + TKK GI+ LQR+GVGL + +M AA+IE
Sbjct: 379 SYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMAVAAVIEN 438
Query: 414 KRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCXX 473
RR AA+N+++ +S FW+ PQ+ + G E F VG +EFF +++ E M+S T +
Sbjct: 439 ARREAAVNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERMKSMSTGLFLSTI 498
Query: 474 XXXXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFW 533
+++T ++ WL N LNK RL+ FYWLL L +NF ++ +
Sbjct: 499 SMGFFVSSLLVSLVDRVTDKS------WLRSN-LNKARLNYFYWLLVVLGALNFLIFIVF 551
Query: 534 SRWYSY 539
+ + Y
Sbjct: 552 AMKHQY 557
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| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 177/531 (33%), Positives = 276/531 (51%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVXXXXXXXXXXX 62
A F+LG + E A + NLITY +E+H +A+ V + GT
Sbjct: 58 ACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIA 117
Query: 63 XXXXXXXWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGXXXXX 122
WT+ F + G LL++ A LP L+P+ C + C A
Sbjct: 118 DSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVA----AALCSPATTVQYAV 173
Query: 123 XXXXXXXXXXGSGCLKPNIISHGADQFKK---QESKKLSTYFNVAYFAFCMGQLIALTLL 179
G+G +KP + S GADQF +E + +++FN YF+ +G I+ TLL
Sbjct: 174 FFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLL 233
Query: 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239
VWVQ + G +GF + M V + S G +YR + P GS T + QV VAA K K
Sbjct: 234 VWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKL 293
Query: 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACI----KVQDGANESPW 295
P + L+ ++ N ++A +R + HT+ ++FLDKA + + + GA +PW
Sbjct: 294 NLPEDISFLYETREK---NSMIA---GSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPW 347
Query: 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASL 355
KLCTVTQVE+VK ++ + PI+A I+++ + +Q+ T VQQG +M N+I F+IPPAS
Sbjct: 348 KLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSM-NRIIRSFEIPPASF 406
Query: 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKR 415
++++ +P+Y+ VP +FT G++ LQR+G+GLF++ S+ AAA++E R
Sbjct: 407 GVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVR 466
Query: 416 RTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCXXXX 475
A + +SIFW PQ+++ G++E+F +G +EFFY +S + M+S +A+
Sbjct: 467 LQLAQDF-VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAV 525
Query: 476 XXXXXXXXXXXXNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLIN 526
T+ GW+ D DLNK LD F+WLL +L L+N
Sbjct: 526 GSYLSSLILTLVAYFTALGGKD--GWVPD-DLNKGHLDYFFWLLVSLGLVN 573
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q56XQ6 | PTR15_ARATH | No assigned EC number | 0.7319 | 0.9617 | 0.9201 | yes | no |
| Q93VV5 | PTR16_ARATH | No assigned EC number | 0.7055 | 0.9130 | 0.8883 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00031976001 | SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (573 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 575 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 5e-58 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 5e-22 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 2e-20 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 1e-09 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.004 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 0.004 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 5e-58
Identities = 104/410 (25%), Positives = 179/410 (43%), Gaps = 51/410 (12%)
Query: 69 FWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALY 128
F T+L+ + G +LL++ A P L P + Y+ LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 129 LVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188
L+ALG+G +KPN+ + GADQF + + + +F+ YF+ G LIA + ++Q + G
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGY 100
Query: 189 DIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSI--FTPIAQVFVAAITKRKQICPSNTY 246
+GFG+ A M + L+ + G Y+ K+P G IA + AA RK P +++
Sbjct: 101 PLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSH 160
Query: 247 ILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQV 306
L+ + ++ +HT + K V +
Sbjct: 161 WLYWALEKY------NKRSISQTKVHTR-VAVIFIPLPKFWA-------LFDQQGSVWLL 206
Query: 307 KIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFV 366
+ I+ ++PI+A I+ + + QL T V+Q MD I F+IPPAS Q+ + ++ +
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLIL 266
Query: 367 VPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQI- 425
+P+ + + P+ + G++ QR G+G+F+ + AA++E KR A
Sbjct: 267 LPILDFLVYPLL----RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTS 322
Query: 426 ------LSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMT 469
L I W P+ I G+ G +EF M S T ++
Sbjct: 323 PGWTVPLFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLS 368
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 5e-22
Identities = 94/397 (23%), Positives = 164/397 (41%), Gaps = 71/397 (17%)
Query: 25 LITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84
L+ Y+ N + + + NI F +L L G ++DS+LG F T+L V + G
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISH 144
L S+ A PS + L D + L L+ALG+G +KP + +
Sbjct: 70 LASLGAV-----PSLGHPLHDALS---------------LVGLALIALGTGGIKPCVSAF 109
Query: 145 GADQFKKQESKKLSTYFNVAYFAFCMGQLIALT----LLVWVQTHSGMD---IGFGVSAA 197
G DQF++++ +F+ YFA G L + L V D + FGV
Sbjct: 110 GGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGI 169
Query: 198 AMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIAT 257
M + LI G +Y+ K P G+I + + + V A+ KR + + LH
Sbjct: 170 LMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLH-------- 221
Query: 258 NRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFA 317
+LD A A + ++ + K ++ V+ +F
Sbjct: 222 --------------------WLDWA-------APKYLIRM-----IRSTKRLLRVLFLFI 249
Query: 318 CTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPV 377
+F + Q + Q + MD + F I P +QA+ +L++ +VP+++ V
Sbjct: 250 PLPMFWALFDQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLILVPIFD---YVV 305
Query: 378 ASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKK 414
K + + L+++ VG+ +A + AAL++ K
Sbjct: 306 YPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNK 342
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 84/476 (17%), Positives = 179/476 (37%), Gaps = 65/476 (13%)
Query: 15 MTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLI 74
M AI L + + + F + + + + + V+L + GG+L+D LG+ T+++
Sbjct: 40 MRAILI--LYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVL 97
Query: 75 FGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGS 134
+ G ++L+ G LY+ L L+ +G+
Sbjct: 98 GAILMAIGHLVLA------------------------ISSVSGP--GGLYIGLALIIVGT 131
Query: 135 GCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGV 194
G KPNI S + + K + ++ F + Y +G LIA + + + G +GFG+
Sbjct: 132 GLFKPNISSLLGELYPKDDPRR-DGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190
Query: 195 SAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNN 254
+A M +GL+ IF+ + V N +
Sbjct: 191 AAVGMIIGLV-----IFLLGRR-----------HVKGIGGVPDPNPLSFNFLLPVLGGLV 234
Query: 255 IATNRVLAISPNNRNLLHTEKFRFLDKACI--KVQDGANESPWKLCTVTQVEQVKIIMSV 312
+ L N+N L I + A ++ + +++
Sbjct: 235 VMILAALLTLLLNQNTFSGV----LLVISILIAIIYFAEAFRSPKVF----DERRRLLAA 286
Query: 313 VPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAI-PYILLIFVVPLYE 371
+P+F +IF + Q+ + N+ F++PPA Q++ P+ +++F
Sbjct: 287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSP---- 342
Query: 372 IVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWI 431
+ + +K + + S + +GL +A + L + ++S++W+
Sbjct: 343 -ILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPS----GLVSVWWL 397
Query: 432 APQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLV 487
+++ E+F + + K + ++SF+ AM + + + G L + L
Sbjct: 398 VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453
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Length = 498 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 75/450 (16%), Positives = 165/450 (36%), Gaps = 75/450 (16%)
Query: 43 IVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102
I + V+LL+ G + D G+ TM++ G V + G +L++ +
Sbjct: 53 IFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD--------- 103
Query: 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162
+++ L +A+GSG K N S +++ + + F
Sbjct: 104 -------------------LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFT 144
Query: 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNK------ 216
+ Y + +G I+ L + + G +GF ++A M +GL++ G + R+
Sbjct: 145 LFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDP 204
Query: 217 -SPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEK 275
S +G + + +AA+ + + + N +L L
Sbjct: 205 LSGQGKTYGKLLLALLAALA-------LVFFCAWLMHHVVIANILLMTV-----TLAVII 252
Query: 276 FRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQT-FSV 334
F F A D + + + + +F ++F + AQ+ T +
Sbjct: 253 F-FFRLAFKPRLDAVARNK--------------MYAYIVLFLEAVVFWVLYAQMPTSLNF 297
Query: 335 QQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRV 394
+ M +++ +P Q++ ++ P+ +++ + K +PL+
Sbjct: 298 FADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPT---TPLKFT 353
Query: 395 GVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSE-MFTAVGLIEFF 453
LF + AA I ++ + S +++ +L L E M + +GL ++
Sbjct: 354 LGMLFCGASFLTFAASI------WFADAGGLTSPWFMVLIYLFQTLGELMISPLGL-SWW 406
Query: 454 YKQSLEGMQSFLTAMTYCSYSFGFYLSSLL 483
K + + + + M + + + G L L
Sbjct: 407 TKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 50/246 (20%), Positives = 101/246 (41%), Gaps = 38/246 (15%)
Query: 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLS 62
A +V+ LQ +E + + LI Y+ N++ + + + + + + V++ + GGFL+
Sbjct: 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLA 69
Query: 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122
D LG+ +++ + G ++L P
Sbjct: 70 DKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF--------------------------- 102
Query: 123 LYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182
LYL+L ++ G G K N+ + ++ + ++ F++ Y A +G +IA +
Sbjct: 103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRR-DGGFSLMYAAGNVGSIIAPIACGYA 161
Query: 183 QTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242
Q +GFG++A M GL+ IF+ N+ FT V + + P
Sbjct: 162 QEEYSWAMGFGLAAVGMIAGLV-----IFLCGNRH-----FTHTRGVNKKVLRATNFLLP 211
Query: 243 SNTYIL 248
+ ++L
Sbjct: 212 NWGWLL 217
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 33/206 (16%)
Query: 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDS 64
+ + + L ++ S++ IV+ F L SL G+LSD
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 65 YLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILY 124
+ G +L+ + G +LL+ + L L
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAFASSLWLL----------------------------L 91
Query: 125 LALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184
+ +L+ LG G L P + A+ F K+ + F +G L+ L +
Sbjct: 92 VGRFLLGLGGGALYPAAAALIAEWFPP---KERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 185 HSGMDIGFGVSAAAMAVGLISLIFGI 210
G F + A + + L+F +
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 38/194 (19%), Positives = 78/194 (40%), Gaps = 34/194 (17%)
Query: 15 MTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLI 74
+ I AV Y+ ++ + S + ++F V+ L GG+L D LG+ +++
Sbjct: 40 LQGIMAV------YLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML 93
Query: 75 FGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGS 134
V G+ L++ H A I+Y+ + +A+G+
Sbjct: 94 GAIVLAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGN 126
Query: 135 GCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGV 194
G K N S + ++K + + L F + Y + +G ++ W+ G + F +
Sbjct: 127 GLFKANPSSLLSTCYEKDDPR-LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFAL 185
Query: 195 SAAAMAVGLISLIF 208
S M + +++ F
Sbjct: 186 SVVGMLITVVNFAF 199
|
Length = 500 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.93 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.92 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.92 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.92 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.92 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.92 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.91 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.91 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.91 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.9 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.89 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.89 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.87 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.86 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.85 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.84 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.82 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.76 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.76 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.74 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.72 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.71 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.69 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.69 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.67 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.66 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.64 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.63 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.6 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.55 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.47 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.46 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.45 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.43 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.4 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.38 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.36 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.36 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.35 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.34 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.3 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.29 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.29 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.29 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.29 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.29 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.27 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.27 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.27 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.27 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.26 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.24 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.23 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.23 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.21 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.2 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.2 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.19 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.18 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.17 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.17 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.16 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.15 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.14 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.12 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.11 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.09 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.09 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.07 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.07 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.07 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.06 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.05 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.03 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.03 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.02 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.01 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.0 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.98 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.85 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.81 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.77 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.76 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.76 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.75 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.67 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.65 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.62 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.59 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.58 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.54 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.54 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.52 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.51 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.49 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.48 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.47 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.47 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.46 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.36 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.35 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.25 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.17 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.17 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.16 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.16 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.08 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.08 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.05 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.04 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.99 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.98 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.93 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.82 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.75 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.63 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.6 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.58 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.58 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.57 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.48 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.27 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.22 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.7 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.68 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.65 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.53 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.33 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.06 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.01 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.93 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.15 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.88 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.68 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.87 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.64 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.54 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.22 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.37 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 90.78 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.26 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 89.07 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 86.02 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.21 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 83.11 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 82.58 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.08 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.02 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=390.98 Aligned_cols=521 Identities=41% Similarity=0.703 Sum_probs=465.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
|+.+.++++.+.+|++++|++..++..|+.+++|.+..++...++.+.......++.+++++|.|+||.+++.++.++..
T Consensus 36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~ 115 (571)
T KOG1237|consen 36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL 115 (571)
T ss_pred hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCC---ccchhhh
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFK---KQESKKL 157 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~---~~~~~~r 157 (575)
+|..++.++..+|.+++++| -.......|+.++......++.++.+..+|.|+.+|...++.+|+++ +.+++.+
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~ 192 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI 192 (571)
T ss_pred HHHHHHHHHHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence 99999999999999999999 33445567999999999999999999999999999999999999999 4445667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhh
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (575)
.+.|+++++..++|..++-.+..++.+..||.+.|.++.+.+++++++++...+.+++++|.++++..+.+++..+.+++
T Consensus 193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~ 272 (571)
T KOG1237|consen 193 PSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKR 272 (571)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhccc----CCCCCCCcccchhhHHHHHHHhhHH
Q 008177 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQD----GANESPWKLCTVTQVEQVKIIMSVV 313 (575)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (575)
+...+.++... +.. ........++++.+++|+++++.++ ....++|+.|+.+.+++.|..++.+
T Consensus 273 ~~~~~~~~~~~-~~~-----------~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~ 340 (571)
T KOG1237|consen 273 KAVVSLDPEEL-YYD-----------CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLL 340 (571)
T ss_pred hccCCCcchhc-ccc-----------ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhh
Confidence 87776653333 111 1111233346677888988887653 3355789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhH
Q 008177 314 PIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQR 393 (575)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~ 393 (575)
++|...+.++.++.|+.++++.|...++++.+.++.+|++.+..+..+..++..|+.+++..|+.+|.++++.++..+.+
T Consensus 341 Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqr 420 (571)
T KOG1237|consen 341 PIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQR 420 (571)
T ss_pred HHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhe
Confidence 99999999999999999999999999999998449999999999999999999999999999999999988878899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 008177 394 VGVGLFVATFSMVAAALIEKKRRTAALN---SNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTY 470 (575)
Q Consensus 394 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 470 (575)
+.+|+++..+++...+..+.+|++.+.+ ...+++++|++++++++|+++.+...+..++.++++|++||+.+++++.
T Consensus 421 ig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l 500 (571)
T KOG1237|consen 421 IGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL 500 (571)
T ss_pred eeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence 9999999999999999999988865443 2367999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 008177 471 CSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYN 540 (575)
Q Consensus 471 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~ 540 (575)
+..++|++++.+++..+...++. +.+|+..+++|..+.+++||+++....+....+..+.++++.+
T Consensus 501 ~t~a~G~~lss~Lv~~v~~~t~~----~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~ 566 (571)
T KOG1237|consen 501 LTVAVGNYLSSVLVSLVQFSTGK----AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYK 566 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeec
Confidence 99999999999999988765532 2469994559999999999999999999998888887766543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=325.26 Aligned_cols=456 Identities=18% Similarity=0.303 Sum_probs=344.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccC----CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMH----FPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFG 76 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~----~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 76 (575)
+|.++.++.+|+||+|+|||+...+..|+..+++ +|++++.-+.+.|..-.++.++++||++||++|+|+++..+.
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4789999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhh
Q 008177 77 FVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKK 156 (575)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 156 (575)
++.++|.++++.... .....++++..++++|.|..++++.++++|++|+++++
T Consensus 100 il~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr- 152 (498)
T COG3104 100 ILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR- 152 (498)
T ss_pred HHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-
Confidence 999999999998630 11445899999999999999999999999999999877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCc--h------hhHHH
Q 008177 157 LSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSI--F------TPIAQ 228 (575)
Q Consensus 157 r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~------~~~~~ 228 (575)
|...++++|++.|+|+.++|.+.+++.+.+||+..|.++++.+.++++.+.+.++.........++ . .....
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGG 232 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999998888765444322211 1 01111
Q ss_pred HHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchh-hhhhhhccc--CCCCCCCcccchhhHHH
Q 008177 229 VFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFL-DKACIKVQD--GANESPWKLCTVTQVEQ 305 (575)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~ 305 (575)
.+......- ..... ..++.++. ....+.... ......+. +.. .+
T Consensus 233 ~~~~~~~~~----------~~~~l-------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~-~e 279 (498)
T COG3104 233 LVVMILAAL----------LTLLL-------------------NQNTFSGVLLVISILIAIIYFAEAFRSP---KVF-DE 279 (498)
T ss_pred HHHHHHHHH----------HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhccC---ccH-HH
Confidence 111110000 00000 00000000 000000000 00001111 112 56
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhccceeeeeec-cccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccC
Q 008177 306 VKIIMSVVPIFACTIIFNTILAQLQTFSVQQGS-AMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKK 384 (575)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r 384 (575)
++|.+..+++++...++|+++.|+++-+..+.. ..+++.. |+.+++++++++|++.++++.|+.+++..|+.++- |+
T Consensus 280 r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~ 357 (498)
T COG3104 280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ 357 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC
Confidence 788888999999999999999999875444433 3344422 68899999999999999999999999998766554 22
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 008177 385 DSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSF 464 (575)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~ 464 (575)
++...++.+|+.+++.+++++...... ..+.++..+.+|+++.+++.++||.+.+|...+++++.+|+.+.+.
T Consensus 358 ---ps~~~KFalGl~l~g~~fl~l~~~~~~----~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~ 430 (498)
T COG3104 358 ---PSTPIKFALGLILAGLGFLILLLAGIW----FGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSF 430 (498)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHHh----hcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHH
Confidence 478889999999999999888776422 1222567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 465 LTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 465 ~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
.+|++.+.+..|+.++..+.+.... +. +..+......+|+..+...++..+..+...++.+
T Consensus 431 ~ma~wfLt~a~~~~l~g~va~~~~~-~~------------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 431 IMAMWFLTVAAGQTLGGQVAGLTAV-TD------------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred HHHHHHHHHHHHHHhhceecccccc-cc------------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999998887663210 00 0012222335677777777666666555555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=318.73 Aligned_cols=459 Identities=15% Similarity=0.224 Sum_probs=322.0
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
||.++.++.++++|++++|++.++++.|+++++|++..+++++.+.+....++.++++|+++||++||||+++++.+++.
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~ 92 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA 92 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999994499999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.++++++.+. ...++++|.++|+|.|...|+..++++|++|++++ +|+++
T Consensus 93 ~g~~~~~~~~~~---------------------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~-~~~~~ 144 (489)
T PRK10207 93 IGYFMTGMSLLK---------------------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP-RLDGA 144 (489)
T ss_pred HHHHHHHHhccc---------------------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch-hhhcc
Confidence 999999986431 23356889999999999999999999999987653 47889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeec--CCCCCchhhHHHHHHH------
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNK--SPRGSIFTPIAQVFVA------ 232 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------ 232 (575)
+++++++.|+|..+||.+++++.++.|||+.|++..+.++++++.+...++.+++. +|++++.+.....+..
T Consensus 145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~ 224 (489)
T PRK10207 145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVM 224 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776666666655554443332 2222222211111000
Q ss_pred HHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhH
Q 008177 233 AITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSV 312 (575)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (575)
....... .+. . ............+...... +.....++ ..+++.+..
T Consensus 225 ~~~~~~~--~~~-----------------------~---~~~~~~~~~~~~i~~~~f~----~~~~~~~~-~~r~r~~~~ 271 (489)
T PRK10207 225 IFVCAWL--MHN-----------------------V---EVANLVLIVLSIVVTIIFF----REAFKLDK-TGRNKMFVA 271 (489)
T ss_pred HHHHHHH--Hhh-----------------------h---hHHHHHHHHHHHHHHHHHH----HHHhcCCH-HHHHHHHHH
Confidence 0000000 000 0 0000000000000000000 00000011 223445555
Q ss_pred HHHHHHHHHHHHHHhhccceeeeeec-cccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCch
Q 008177 313 VPIFACTIIFNTILAQLQTFSVQQGS-AMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPL 391 (575)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~ 391 (575)
..+++....+|..+.|.......+.. ..+.... |+..++++++.++++..++..|+.+++. +|.++|+..+++.
T Consensus 272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~----~rl~~r~~~~~~~ 346 (489)
T PRK10207 272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIY----THLGSKGKDLSMP 346 (489)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHH----HHHhhCCCCCCcH
Confidence 56667788889999888654333322 3344333 7788899999999999989999987766 5555555556888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 008177 392 QRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYC 471 (575)
Q Consensus 392 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 471 (575)
.++.+|+++.+++++.+....... .+.+...+.+|+++.+++.++||.+.+|..++++++.+|++++|.++|++++
T Consensus 347 ~k~~~G~~l~~~~~~~~~~~~~~~----~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l 422 (489)
T PRK10207 347 MKFTLGMFLCSLGFLTAAAAGMWF----ADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFL 422 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 999999999998887654332110 0112345778889999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 472 SYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 472 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
.+++|+.++..+...+..... ...+. .....+..+|..++..+++..++++.+.++.+
T Consensus 423 ~~~ig~~lg~~l~~~~~~~~~----~~~~~-----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 423 TQAAAFLLGGYVATFTAVPDN----ITDPL-----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred HHHHHHHHHHHHHHHhccccc----cccch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776521000 00000 01123456777777777777676666655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=316.72 Aligned_cols=448 Identities=15% Similarity=0.239 Sum_probs=322.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhc--cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNE--MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV 78 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~ 78 (575)
+|.++.++..+++|++++|++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||++++++.++
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~ 88 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIV 88 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHH
Confidence 46788899999999999999999999999987 9999999999999999999999999999999933999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 79 ELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.+++.++++++++ ...++++|.+.|+|.|...|+..++++|++|+++.++|+
T Consensus 89 ~~~g~~~~~~~~~----------------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~ 140 (475)
T TIGR00924 89 LMLGHFMLAMSIY----------------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD 140 (475)
T ss_pred HHHHHHHHHhccc----------------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc
Confidence 9999999988644 456788999999999999999999999999976645689
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHH-----HH----
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIA-----QV---- 229 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~---- 229 (575)
+++++++++.|+|.++||.+++++.++.||++.|++.++.++++++.+....+.+++.++++++.++.. +.
T Consensus 141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (475)
T TIGR00924 141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALL 220 (475)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999887777776666555544433222222111100 00
Q ss_pred --HHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHH
Q 008177 230 --FVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVK 307 (575)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (575)
+......... .... ...+.++ ................++ ..+. ..++
T Consensus 221 ~~~~~~~~~~~~-~~~~----------~~~~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~-~~~~ 269 (475)
T TIGR00924 221 AALALVFFCAWL-MHHV----------VIANILL---------------MTVTLAVIIFFFRLAFKP----RLDA-VARN 269 (475)
T ss_pred HHHHHHHHHHHH-Hhcc----------HHHHHHH---------------HHHHHHHHHHHHHHHHhc----cCCH-HHHh
Confidence 0000000000 0000 0000000 000000000000000000 0011 1223
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccee-eeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCC
Q 008177 308 IIMSVVPIFACTIIFNTILAQLQTFS-VQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDS 386 (575)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~ 386 (575)
+.....++++...++|..+.|+.+.+ .++...++.+.. ++.+|++++++++++.+++..|+.+++..++. ||..
T Consensus 270 ~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~----~~~~ 344 (475)
T TIGR00924 270 KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLG----RKGK 344 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHH----hCCC
Confidence 44456778888889999999987743 333344566554 67889999999999999999999887654443 3323
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 008177 387 GISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLT 466 (575)
Q Consensus 387 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~ 466 (575)
+.+...++.+|+++.++++..++.... .. +.+...+.+|+++.+++.++||.+..|..++++++.+|++.||+++
T Consensus 345 ~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~-~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~ 419 (475)
T TIGR00924 345 DPTTPLKFTLGMLFCGASFLTFAASIW----FA-DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML 419 (475)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHh----hc-CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 346777889999999999988776521 11 1223578899999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 467 AMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 467 g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
|++.+...+|+.+++.+....... .+...+|...+..+++..++++...++
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAVP-------------------QGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-------------------cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765321 112345666666666666666555543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=306.30 Aligned_cols=418 Identities=17% Similarity=0.259 Sum_probs=304.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+|.++.++..+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||+++++.++.+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999996699999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.++++...+ +...++++..+..+|.|...++.+++++|++|++++ +|.++
T Consensus 88 lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~-~R~sg 139 (493)
T PRK15462 88 IGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP-RRDGG 139 (493)
T ss_pred HHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc-cccce
Confidence 99887765321 012244555566678888889999999999987532 38999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCC-CCCchhhHHH-------HHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSP-RGSIFTPIAQ-------VFVA 232 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~ 232 (575)
++++|+..|+|+.++|.+++++.++.||++.|.++++.++++++.+.+.++.+.+... +.++.++... +...
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL 219 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888777777665544332211 1111111000 0000
Q ss_pred HHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhh-hhhhc-ccCCCCCCCcccchhhHHHHHHHh
Q 008177 233 AITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDK-ACIKV-QDGANESPWKLCTVTQVEQVKIIM 310 (575)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 310 (575)
.... + .+.. ....++....... ..+.. ..... .. ......++++++.
T Consensus 220 ~~~~-----~----~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~er~r~~ 268 (493)
T PRK15462 220 LVAT-----P----ALIT------------------VLFWKEWSVYALIVATIIGLGVLAK---IY-RKAENQKQRKELG 268 (493)
T ss_pred HHHH-----H----HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HH-HhcCCHHHHhhHH
Confidence 0000 0 0000 0000000000000 00000 00000 00 0001124567888
Q ss_pred hHHHHHHHHHHHHHHHhhccce-eeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCC
Q 008177 311 SVVPIFACTIIFNTILAQLQTF-SVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGIS 389 (575)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~ 389 (575)
...++++...++|..++|.++- ......++|+++. |+.+|+++++++|++.+++..|++.++..++. ||++.++
T Consensus 269 ~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~----~~~~~~s 343 (493)
T PRK15462 269 LIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESV----AGNRTVR 343 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh----cCCCCCC
Confidence 8888999999999999999863 2223356777766 88999999999999999999999988774442 2222357
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 008177 390 PLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMT 469 (575)
Q Consensus 390 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 469 (575)
...++.+|+++++++++++...... .+.++..+.+|++..+++.++||.+.+|...+.+++.+|++.||+.+|++
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~-----~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w 418 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARW-----SAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIY 418 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence 8899999999999999888765411 12234578899999999999999999999999999999999999999999
Q ss_pred HHHH-hHHHHHHHHHHHHH
Q 008177 470 YCSY-SFGFYLSSLLVSLV 487 (575)
Q Consensus 470 ~~~~-~lg~~lg~~l~~~i 487 (575)
.... .+|+.++..+.+..
T Consensus 419 ~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 419 MLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7744 68888887777665
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=301.22 Aligned_cols=453 Identities=14% Similarity=0.239 Sum_probs=317.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++.++..+++|++++|++.++++.|+++++|++..+++++.+.+.......++++|+++||++|||++++++.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999988777777889999999933999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+++++.+ ....++++|+++|+|.|...++..++++|++|+++ ++|.+++
T Consensus 101 g~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-~~~~~~~ 152 (500)
T PRK09584 101 GYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-PRLDGAF 152 (500)
T ss_pred HHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-hhhhhcc
Confidence 9999887632 13456788999999999999999999999998654 3366789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeec--CCCCCchhhHHH------HHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNK--SPRGSIFTPIAQ------VFVAA 233 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~ 233 (575)
++++++.++|..+||.+++++.++.|||+.|++.++.++++++.+.+..+.+++. ++++++.+.... .....
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALI 232 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877777666555544333222 222222221110 00000
Q ss_pred -HhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhH
Q 008177 234 -ITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSV 312 (575)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (575)
........++ ..+..+. +....... . . ....+..++ .++++.+..
T Consensus 233 ~~~~~~~~~~~------------~~~~~~~---------------~~~~~~~~-~-~----~~~~~~~~~-~~~~~~~~~ 278 (500)
T PRK09584 233 AIATWLLHNQE------------IARMALG---------------VVALGIVV-I-F----GKEAFAMKG-AARRKMIVA 278 (500)
T ss_pred HHHHHHHhcch------------HHHHHHH---------------HHHHHHHH-H-H----HHHHhhcCH-HHHHHHHHH
Confidence 0000000000 0000000 00000000 0 0 000001112 234555555
Q ss_pred HHHHHHHHHHHHHHhhccceeeeeec-cccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCch
Q 008177 313 VPIFACTIIFNTILAQLQTFSVQQGS-AMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPL 391 (575)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~ 391 (575)
+..++..+++|+.+.|++..+..+.. ..+.+.. |+..+++++++++++.+++..|+.+++.. |.++| .++.
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~----~l~~r---~~~~ 350 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYN----KMGDR---LPMP 350 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHH----HhCcC---CCcH
Confidence 66778888999999999876554432 2343443 67889999999999999999999987664 44433 2577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 008177 392 QRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYC 471 (575)
Q Consensus 392 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 471 (575)
.++.+|+++++++++.+..... ..+.+...+.+|+++.+++.++||++.+|...+++++.+|+++||+++|++.+
T Consensus 351 ~~~~~G~~l~~l~f~~l~~~~~-----~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l 425 (500)
T PRK09584 351 HKFAIGMVLCSGAFLVLPLGAK-----FANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFL 425 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 8999999999999988776531 11223456778899999999999999999999999999999999999999988
Q ss_pred HHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 472 SYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 472 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
...+|+.++..+.+.+..- +-..+......++..+|..++..+++..++.+...++.+
T Consensus 426 ~~a~g~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 426 TTAGAALIAGYVANLMAVP---------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred HHHHHHHHHHHHHHHhccc---------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777644210 000000011223566777777777666555555554433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=250.09 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=132.9
Q ss_pred hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008177 21 VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPC 100 (575)
Q Consensus 21 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (575)
+...+.+++.+++|++..+.+++.+++.++..++++++|+++||+ |||++++++.++.+++.++++++++
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s--------- 254 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG--------- 254 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 345556677789999999999999999999999999999999996 9999999999999999999988755
Q ss_pred CCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008177 101 NMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLV 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 180 (575)
++.++++|++.|++.|+..+...++++|.+| ++.|++.+++......+|.++++.++.
T Consensus 255 -------------------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p---~~~Rg~~~g~~~~~~~iG~ila~~la~ 312 (742)
T TIGR01299 255 -------------------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLA---QEKRGEHLSWLCMFWMIGGIYAAAMAW 312 (742)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999 455999999999999999999998876
Q ss_pred HHhhc-------------ccchhHHHHHHHHHHHHHHHHHH
Q 008177 181 WVQTH-------------SGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 181 ~l~~~-------------~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+... .+||+.|++.++..++.++..++
T Consensus 313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 35888888877765555444433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-24 Score=227.86 Aligned_cols=368 Identities=11% Similarity=0.029 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....++.....|...+.+| .+.+++|.|+.+.+++.+.+.+++.+++++.|.++||+ |||+++..+.++..++.+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 89 (390)
T PRK03545 12 VTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIASHV 89 (390)
T ss_pred HHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHH
Confidence 3334444444444443333344 56779999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+++++++ ++.+++.|+++|++.+...+...+++.|++|+++ |+++++++
T Consensus 90 ~~~~~~~----------------------------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~g~~ 138 (390)
T PRK03545 90 LSALAWN----------------------------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK---KAQALSLL 138 (390)
T ss_pred HHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh---hhhHHHHH
Confidence 9998765 7779999999999999888999999999999554 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCC
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSN 244 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (575)
..+.++|..++|.+++.+.++.|||+.|++.++..++..+......|+. +++++ .+. +.
T Consensus 139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~-~~~-~~--------------- 197 (390)
T PRK03545 139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHS-GSL-KS--------------- 197 (390)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCc-chH-HH---------------
Confidence 9999999999999999999989999999998876555544433322211 11000 000 00
Q ss_pred cccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHH
Q 008177 245 TYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNT 324 (575)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (575)
+ ++..++.+........+......+.
T Consensus 198 ---------------------------------~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (390)
T PRK03545 198 ---------------------------------L---------------------PLLFRRPALVSLYLLTVVVVTAHFT 223 (390)
T ss_pred ---------------------------------H---------------------HHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 0 0000000111111111111112222
Q ss_pred HHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHH
Q 008177 325 ILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATF 403 (575)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i 403 (575)
.....+.+... .. |++. ..........+..+++..+.+++. +|.++| .+..+..+..+
T Consensus 224 ~~~~~~~~l~~-------~~--g~s~~~~~~~~~~~~~~~~~g~~~~g~l~----dr~~~~--------~~~~~~~~~~~ 282 (390)
T PRK03545 224 AYSYIEPFVQQ-------VA--GLSENFATLLLLLFGGAGIIGSVLFSRLG----NRHPSG--------FLLIAIALLLV 282 (390)
T ss_pred HHHHHHHHHHH-------hc--CCCccHHHHHHHHHHHHHHHHHHHHHHHh----hccchh--------HHHHHHHHHHH
Confidence 22222121111 00 1111 122333334444555555554443 443322 24444444444
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHH
Q 008177 404 SMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLL 483 (575)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l 483 (575)
+........ .+.+.+.+..++.|++.+...+...+.+.+..| +.|++++|+++....+|..+|+.+
T Consensus 283 ~~~~l~~~~-------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~ 348 (390)
T PRK03545 283 CLLLLLPAA-------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL 348 (390)
T ss_pred HHHHHHHHh-------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332221 234445556677788877777777788888877 578999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 484 VSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 484 ~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
.|.+.+.. ++...|++.+.+.+++++..+...
T Consensus 349 ~G~~~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 349 GNQVSLHL-------------------GLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHhcc-------------------ChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99885432 233567777777777777665554
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=226.98 Aligned_cols=375 Identities=13% Similarity=0.034 Sum_probs=244.0
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+|++..+....+...+......+.++.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||+++.+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 35667777788888888888899999999999999999999999999999999999999999997 99999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.+.++++..... ....+...+++.|+++|++.+...+...+++.|++|+++ |+++
T Consensus 93 ~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~ 149 (399)
T PRK05122 93 LSGLLYLLAGLLAA--------------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH---TGRV 149 (399)
T ss_pred HHHHHHHHhhhhhc--------------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh---hccc
Confidence 88777665421000 001235678999999999999999999999999999555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhccc
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (575)
.+++..+.++|..+|+.+++++.++.||++.+++..+..++.++ +..+ .+..+++++...
T Consensus 150 ~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~---------------- 209 (399)
T PRK05122 150 ISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLL---LARP-RPAVPPVKGERL---------------- 209 (399)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH---HHhc-CCCCCCCCccch----------------
Confidence 99999999999999999999999999999988776554433322 1111 100000000000
Q ss_pred CCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHH
Q 008177 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTI 320 (575)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (575)
++. +..+..... .....+...
T Consensus 210 ------------------------------------~~~---------------------~~~~~~~~~--~~~~~~~~~ 230 (399)
T PRK05122 210 ------------------------------------PFR---------------------RVLGRVWPY--GMGLALASI 230 (399)
T ss_pred ------------------------------------hHH---------------------HHHHHHHHH--HHHHHHHHH
Confidence 000 000000000 000111111
Q ss_pred HHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHH
Q 008177 321 IFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFV 400 (575)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~ 400 (575)
.+.......+.+...+ . .. ..........+..+++.++.+++. +|.++ .+.+..+.++
T Consensus 231 ~~~~~~~~~~~~~~~~------~----~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~~~-------~~~~~~~~~~ 288 (399)
T PRK05122 231 GFGTIATFITLYYAAR------G----WD-GAALALTLFGVAFVGARLLFGNLI----NRLGG-------LRVAIVSLLV 288 (399)
T ss_pred HHHHHHHHHHHHHHHc------c----cc-cchHHHHHHHHHHHHHHHHHHHHH----HHhcc-------HHHHHHHHHH
Confidence 1111111111111110 1 10 011122223333444444554444 44332 2335556666
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHH
Q 008177 401 ATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLS 480 (575)
Q Consensus 401 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg 480 (575)
.+++++.+.... +.+...+..++.|++.+...+.......+.+|++.||+++|+.+....+|..++
T Consensus 289 ~~~~~~~~~~~~--------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 354 (399)
T PRK05122 289 EILGLLLLWLAP--------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGIT 354 (399)
T ss_pred HHHHHHHHHHhc--------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655544331 334445566788888888788777888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 008177 481 SLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFW 533 (575)
Q Consensus 481 ~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~ 533 (575)
+.+.+.+.+. .+++..|++.+++++++.+..+..
T Consensus 355 ~~~~g~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 355 GPLAGLVASW-------------------FGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHH-------------------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888877542 223456777777777666555544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=224.54 Aligned_cols=373 Identities=10% Similarity=0.027 Sum_probs=238.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++.+....++...+.+...+.+|.|+++++|+|+.+.+++.+.+.++..++++++|+++||+ ||||+++.+.+...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 455666677777788888889999999999999999999999999999999999999999997 9999999998887776
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.+........+. ....++..+++.|+++|++.+...+...+++.|.+|+++ |+++++
T Consensus 95 ~~~~~~~~~~~~--------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~a~~ 151 (392)
T PRK12382 95 GLAYLLAAILPV--------------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH---SGKVMS 151 (392)
T ss_pred HHHHHhhhcccc--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc---cchhhh
Confidence 554333211110 001346778999999999999888888899999999555 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCC
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (575)
+++.+.++|..++|.+++++.+..||++.+.+..+..++.+. +.. +.++.+++++...+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~----------------- 210 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERPS----------------- 210 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCch-----------------
Confidence 999999999999999999999989999877665443322221 111 11111000000000
Q ss_pred CCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHH
Q 008177 243 SNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIF 322 (575)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (575)
..+.. +.... ... ........+
T Consensus 211 -----------------------------------~~~~~------------------~~~~~-~~~----~~~l~~~~~ 232 (392)
T PRK12382 211 -----------------------------------LWSVV------------------GLIWK-PGL----GLALQGVGF 232 (392)
T ss_pred -----------------------------------HHHHH------------------HHHHH-hHH----HHHHHHHHH
Confidence 00000 00000 000 011111111
Q ss_pred HHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHH
Q 008177 323 NTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVAT 402 (575)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~ 402 (575)
.......+.++. +.. +. ..........+..++..++.+++. +|.++|+ .+..+..+..
T Consensus 233 ~~~~~~~~~~~~------~~~----~~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~g~~~-------~~~~~~~~~~ 290 (392)
T PRK12382 233 AVIGTFVSLYFA------SKG----WA-MAGFTLTAFGGAFVLMRVLFGWMP----DRFGGVK-------VAIVSLLVET 290 (392)
T ss_pred hHHHHHHHHHHH------hcC----Cc-hhHHHHHHHHHHHHHHHHHHHHHH----HhcCCCe-------ehHHHHHHHH
Confidence 111111111111 101 11 011112223333444555555544 4544332 2555566666
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHH
Q 008177 403 FSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482 (575)
Q Consensus 403 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~ 482 (575)
++++...... +.+...+..++.+++.+...+...+...+.+|++.||++.|+.++...+|..+++.
T Consensus 291 ~~~~~~~~~~--------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 291 VGLLLLWLAP--------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred HHHHHHHHcc--------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444331 33444556677788888878887888899999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 008177 483 LVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFW 533 (575)
Q Consensus 483 l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~ 533 (575)
+.+.+.+.. ++...|.+.+.+.+++.+..+.+
T Consensus 357 ~~g~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 357 LAGMLATSF-------------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHh-------------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 999885432 23356777777777666655544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=241.81 Aligned_cols=337 Identities=27% Similarity=0.462 Sum_probs=268.6
Q ss_pred HhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008177 16 TAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQL 95 (575)
Q Consensus 16 ~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 95 (575)
+++||+..++..|+.+.+|++.+++..+.+.+....++.++++|+++|+++||+++++++.++..+|..++++.+. |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999987543 210
Q ss_pred CCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q 008177 96 RPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIA 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 175 (575)
.........+++..+.++|.|+++|+..+..+|+++++++++|.++++++|+++|+|++++
T Consensus 80 -------------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis 140 (654)
T TIGR00926 80 -------------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLIS 140 (654)
T ss_pred -------------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 0011234467888899999999999999999999997766679999999999999999999
Q ss_pred HHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccc
Q 008177 176 LTLLVWVQTHS-------GMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYIL 248 (575)
Q Consensus 176 ~~~~~~l~~~~-------g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (575)
+++.+++.+.. +|...|.++++.++++++++....+++++.+|.+++.....+++....+++....++.
T Consensus 141 ~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~---- 216 (654)
T TIGR00926 141 TIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH---- 216 (654)
T ss_pred HHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc----
Confidence 99999998543 6999999999999999999888887777777766666666666655554432110000
Q ss_pred cccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 008177 249 HGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQ 328 (575)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (575)
....|.+.+... .....++++|++++.+++++...++|.++.|
T Consensus 217 -------------------------~~~~~ld~a~~~------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q 259 (654)
T TIGR00926 217 -------------------------WPLHWLDYAKDK------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQ 259 (654)
T ss_pred -------------------------cchhHHHHhccc------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001233322211 1123456778899999999999999999999
Q ss_pred ccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHH
Q 008177 329 LQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAA 408 (575)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~ 408 (575)
..+.+..|...++.+++ ++.+++.+++.++++.+++..|+++..+.+..+|.+. ..++..++.+|+++.++++++.
T Consensus 260 ~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 260 QGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred chhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHH
Confidence 98877777777777665 6788999999999999999999998766665555432 2578999999999999999999
Q ss_pred HHHHHHHHh
Q 008177 409 ALIEKKRRT 417 (575)
Q Consensus 409 ~~~~~~~~~ 417 (575)
...+..+.+
T Consensus 336 ~~ve~~~~~ 344 (654)
T TIGR00926 336 ALVQLKVNP 344 (654)
T ss_pred HHHHHHHhc
Confidence 888766553
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=223.47 Aligned_cols=352 Identities=13% Similarity=0.011 Sum_probs=224.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+.......+++.+..+......| .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 94 (406)
T PRK11551 17 IGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLFS 94 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHH
Confidence 34444555556666655555555 55678999999999999999999999999999999997 99999999999999988
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++++++.+ ...+++.|++.|++.+...+...+++.|++|+++ |++++++
T Consensus 95 ~~~~~~~~----------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~ 143 (406)
T PRK11551 95 LATAQAWD----------------------------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---RGTAVSL 143 (406)
T ss_pred HHHHHhcc----------------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH---HHHHHHH
Confidence 88888654 6678899999999999999999999999999544 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCC
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPS 243 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (575)
++...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++.+++++. ++
T Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------~~ 204 (406)
T PRK11551 144 MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-------------------GK 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-------------------ch
Confidence 99999999999999998988889999999987765444443333322221100000000 00
Q ss_pred CcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHH
Q 008177 244 NTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFN 323 (575)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 323 (575)
+. ..... ...+.. ...+........+......+
T Consensus 205 ~~------------------------------~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~ 237 (406)
T PRK11551 205 QR------------------------------APVLR----------------ALFGEG-RATATLLLWISYFFTLIVLY 237 (406)
T ss_pred hh------------------------------hhhHH----------------HHhhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 00 00000 000000 00011111111111112222
Q ss_pred HHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHH
Q 008177 324 TILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVAT 402 (575)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~ 402 (575)
....+.+.+... . |++. ..........+..+++..+.+++.| |.++| +.+..+.+...
T Consensus 238 ~~~~~~p~~~~~------~----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~-------~~~~~~~~~~~ 296 (406)
T PRK11551 238 FLLNWLPSLLVG------Q----GLSRSQAGLVQIAFNIGGALGSLLIGALMD----RLRPR-------RVVLLIYAGIL 296 (406)
T ss_pred HHHHHHHHHHHh------C----CCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHH-------HHHHHHHHHHH
Confidence 222222222111 1 1111 1233334444555556666665554 43322 22333344444
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHH
Q 008177 403 FSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482 (575)
Q Consensus 403 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~ 482 (575)
++++.+... .+.+.+.+..++.+++.....+..+++..|.+|++.|++++|+.++.+.+|..+++.
T Consensus 297 ~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 362 (406)
T PRK11551 297 ASLAALAAA--------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL 362 (406)
T ss_pred HHHHHHHhc--------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence 444333322 133344455566777776677788889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 008177 483 LVSLVNK 489 (575)
Q Consensus 483 l~~~i~~ 489 (575)
+.+.+.+
T Consensus 363 ~~g~l~~ 369 (406)
T PRK11551 363 LAGQLLA 369 (406)
T ss_pred hHhhhhc
Confidence 9998754
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-24 Score=223.45 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=123.8
Q ss_pred hhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 19 AAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 19 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
+.......+.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+ |||++++.+......+.......++
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~------- 78 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDPFN------- 78 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 33444455566779999999999999999999999999999999997 9999876665555444332222122
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
+..+++.|+++|+|.+.. +......+|++|+++ |++++++.+.+..+|..+++.+
T Consensus 79 ---------------------~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~---r~~a~~~~~~~~~lG~~l~~~~ 133 (368)
T TIGR00903 79 ---------------------YEWLLACQLLAALGQPFL-LNAFAPAASQIREER---RDLVISLLSFAMYLGIIFALAA 133 (368)
T ss_pred ---------------------HHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999864 555666799999544 9999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 179 LVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 179 ~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++++.+++|||+.|++.++..++..+...+
T Consensus 134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999866655444444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=226.23 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=153.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+|+++.++...++..++.+.+.++++.|+++++|+|+.+++++.+.+.++..+++++.|+++||+ |||++++++.++..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence 57888888999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.++++++++ .+.+++.|.+.|.+.+...+...++..|.+|+++ |+++
T Consensus 85 ~~~~~~~~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 133 (395)
T PRK10054 85 SGFIAIPLVNN----------------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS---KTKI 133 (395)
T ss_pred HHHHHHHHHhH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH---HHHH
Confidence 99888888654 5556777888888777778888999999999544 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+++.+...++|..++|.+++++.+ .+|+.+|++.++..++.++...+
T Consensus 134 ~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 134 FSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 79999999888776666544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=223.56 Aligned_cols=348 Identities=11% Similarity=0.130 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.++...++...+.+.+.++++.|+++++|.|+.+.|++.+.+.+...+.++++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
++++.++ .+.+++.|+++|++.+...|...+++.|.+|+++ |+++.++.
T Consensus 92 ~~~~~~~----------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~ 140 (400)
T PRK11646 92 TMAIAHE----------------------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ---RGRFFSLL 140 (400)
T ss_pred HHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHH
Confidence 9887644 6678899999999998888999999999999544 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCC
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSN 244 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (575)
+...++|..+||.+++++. .+||++.|++.++..++..+......++.+ ++ +..++..+
T Consensus 141 ~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~---~~-~~~~~~~~---------------- 199 (400)
T PRK11646 141 MMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK---LS-TVRTPVRE---------------- 199 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc---cc-ccchhhHH----------------
Confidence 9999999999999999998 689999999887765554443333222110 00 00000000
Q ss_pred cccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHH
Q 008177 245 TYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNT 324 (575)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (575)
+ ++ ....+ +........+ ..++.
T Consensus 200 --------------------------------~-----------------~~----~~~~~-~~~~~~~~~~---~~~~~ 222 (400)
T PRK11646 200 --------------------------------G-----------------MT----RVLRD-KRFVTYVLTL---TGYYM 222 (400)
T ss_pred --------------------------------H-----------------HH----HHHcC-chHHHHHHHH---HHHHH
Confidence 0 00 00001 1111111111 11111
Q ss_pred HHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHH
Q 008177 325 ILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFS 404 (575)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~ 404 (575)
...+...+.+.+ ..+.. +.....+.+.....+..+......+++.+ +|. +..+.+..+.++.+++
T Consensus 223 ~~~~~~~~~p~~---~~~~~--~~~~~~g~l~~~~~~~~~~~~~~~~~~~~---~r~-------~~~~~~~~~~~~~~~~ 287 (400)
T PRK11646 223 LAVQVMLMLPIM---VNDIA--GSPSAVKWMYAIEACLSLTLLYPIARWSE---KRF-------RLEHRLMAGLLIMSLS 287 (400)
T ss_pred HHHHHHHhhhhh---HHhhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-------chhHHHHHHHHHHHHH
Confidence 111111111110 11110 00111122222222222222222222221 121 2233456667677777
Q ss_pred HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHH
Q 008177 405 MVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLV 484 (575)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~ 484 (575)
++.+.... +.+.+.+..++.+++.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.
T Consensus 288 ~~~l~~~~--------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 288 MFPIGMVS--------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred HHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence 66555432 2333444556677888888888889999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 008177 485 SLVNKIT 491 (575)
Q Consensus 485 ~~i~~~~ 491 (575)
|.+.+.+
T Consensus 354 G~l~~~~ 360 (400)
T PRK11646 354 GWLFDLG 360 (400)
T ss_pred HHHHHHH
Confidence 9997754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=222.86 Aligned_cols=161 Identities=15% Similarity=0.050 Sum_probs=137.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008177 9 GLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSV 88 (575)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~ 88 (575)
...++..+..+.+...+|.+. +++|+|+.+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~ 107 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGF 107 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHH
Confidence 333344444445555566554 57999999999999999999999999999999997 9999999999999999999888
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHH
Q 008177 89 QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAF 168 (575)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 168 (575)
+++ ++.+++.|++.|++.|...+...+++.|++|+++ |+++.++++.+.
T Consensus 108 ~~~----------------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---rg~~~~~~~~~~ 156 (434)
T PRK11663 108 SSS----------------------------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE---RGGWWAIWNTAH 156 (434)
T ss_pred HhH----------------------------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH---HHHHHHHHHHHH
Confidence 755 6678888999999999989999999999999544 999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 169 CMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 169 ~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
++|..+++.+++++.+.+|||+.|++.++..++.
T Consensus 157 ~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 157 NVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877654433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=216.93 Aligned_cols=359 Identities=11% Similarity=0.073 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.++...++..++.......+|.|.. +++.++.+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..++..
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~ 79 (365)
T TIGR00900 2 RLLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVA 79 (365)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHH
Confidence 34566777777777777788888776 6899999999999999999999999999999997 999999999999888888
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
++++....+ +.+.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++.
T Consensus 80 ~~~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 133 (365)
T TIGR00900 80 VLPFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ---LTQANSLS 133 (365)
T ss_pred HHHHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHhHH
Confidence 887765211 1237778999999999999999999999999999554 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchh-hHHHHHHHHHhhhcccCCC
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFT-PIAQVFVAAITKRKQICPS 243 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (575)
+.+.++|..++|.+++++.+..|||+.|++.++..+++.+......++..+ ++++++.+ +..+
T Consensus 134 ~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------------- 197 (365)
T TIGR00900 134 QAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA-ASEIQALSNAVLR--------------- 197 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC-CccccccchhHHH---------------
Confidence 999999999999999999999999999998877655554443332211100 00000000 0000
Q ss_pred CcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHH-HHHHHHHH
Q 008177 244 NTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVP-IFACTIIF 322 (575)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 322 (575)
+..+ .+ +.....+....... .+......
T Consensus 198 ---------------------------------~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
T TIGR00900 198 ---------------------------------DTRE-------------GI-----KFVLKNPLLRTLLLLALLFNLVF 226 (365)
T ss_pred ---------------------------------HHHh-------------HH-----HHHHcCcHHHHHHHHHHHHHHHH
Confidence 0000 00 00000011111111 11111111
Q ss_pred HHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHH
Q 008177 323 NTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVAT 402 (575)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~ 402 (575)
..........+..+. .+.+ ....+.......+..++...+.+++. +|.++ .+.+..+.++.+
T Consensus 227 ~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~-------~~~~~~~~~~~~ 288 (365)
T TIGR00900 227 APAIVALFPYVQSKY----LGRG---STHYGWVLAAFGLGALLGALLLGLLG----RYFKR-------MALMTGAIFVIG 288 (365)
T ss_pred HHHHHHHhHHHHHHH----hCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhch-------hHHHHHHHHHHH
Confidence 111101111111100 0100 11122333344444445555554333 44332 233455555565
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHH
Q 008177 403 FSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSL 482 (575)
Q Consensus 403 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~ 482 (575)
+++....... + +.+...+..++.+++.+...+...++..|.+|++.|++++|+.++...++..+++.
T Consensus 289 ~~~~~~~~~~------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 289 LAILVVGLTP------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred HHHHHHHhhc------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544431 1 24455566788899988888999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 008177 483 LVSLVNK 489 (575)
Q Consensus 483 l~~~i~~ 489 (575)
+.+.+.+
T Consensus 356 ~~g~l~~ 362 (365)
T TIGR00900 356 LAGPLAD 362 (365)
T ss_pred HHHHHHH
Confidence 9988764
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=221.99 Aligned_cols=389 Identities=13% Similarity=0.048 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
....++..+++..+........+|.+++ +++.++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG 95 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence 4455566677777776666677776664 6788999999999999999999999999999997 9999999988888887
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+++...-.. ..+.+.+++.|++.|++.+...+...+++.|..|++ +|+++.+
T Consensus 96 ~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 149 (417)
T PRK10489 96 FIGLALNAFLP-----------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE---NLMQAGA 149 (417)
T ss_pred HHHHHHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH---HHHHHHH
Confidence 77665321000 122566888999999998888888899999999954 4999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCC
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICP 242 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (575)
+.+...++|..+||.+++.+.+..+|++.|++.++..++..+..... ++. +++++...+..+
T Consensus 150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~---~~~~~~~~~~~~-------------- 211 (417)
T PRK10489 150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PAL---PPPPQPREHPLR-------------- 211 (417)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCC---CCCCcccccchH--------------
Confidence 99999999999999999999988899999988776655554433322 211 111000000000
Q ss_pred CCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHH
Q 008177 243 SNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIF 322 (575)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (575)
+..+. + +.....+...............
T Consensus 212 ----------------------------------~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~ 239 (417)
T PRK10489 212 ----------------------------------SLLAG-------------F-----RFLLASPVVGGIALLGGLLTMA 239 (417)
T ss_pred ----------------------------------HHHHH-------------H-----HHHHcChHHHHHHHHHHHHHHH
Confidence 00000 0 0000001111111010111111
Q ss_pred HHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHH
Q 008177 323 NTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVA 401 (575)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~ 401 (575)
.......+.+. .... |.+. ..+.+.....++.+++..+.+++. +|. ++.+.+..+.++.
T Consensus 240 ~~~~~~~p~~~-------~~~~--g~~~~~~g~~~~~~~~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~ 299 (417)
T PRK10489 240 SAVRVLYPALA-------DEVW--QMGAAQIGLLYAAVPLGAALGALTSGWLA----HSA-------RPGLLMLLSTLGS 299 (417)
T ss_pred HhHHHhhHHHH-------Hhcc--CCChhHhHHHHHHHHHHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHH
Confidence 11111111111 1111 1111 122333344444444454444332 332 1223355566666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHH
Q 008177 402 TFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSS 481 (575)
Q Consensus 402 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~ 481 (575)
+++++.+... .+.+...+..++.|++.+...+...+++.|.+|++.||+++|+.+..+.+|..+++
T Consensus 300 ~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 300 FLAVGLFGLM--------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHHcc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 6665554432 13344455667778888777777788999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccccccCC
Q 008177 482 LLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPS 542 (575)
Q Consensus 482 ~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 542 (575)
.+.|.+.+..+. ...+++.++..++..++.+...++.++.+.
T Consensus 366 ~l~G~l~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 366 ALLGGLGAMMTP-------------------VASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred HHHHHHHHHhch-------------------hhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999988653222 234555565555554555444444444333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-23 Score=221.60 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=152.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.+|.+....++..+..+.+.+.+|.+.+ ++|.++.+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 5677777788888888888888888775 7999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.++++++++ ...+++.|+++|++.++..+...+++.|.+| +++|+++.+
T Consensus 89 ~~~~~~~~~----------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 137 (471)
T PRK10504 89 SLFCALSGT----------------------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVP---REQYMAAMT 137 (471)
T ss_pred HHHHHHhCC----------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC---HHHHHHHHH
Confidence 888887644 6668899999999999999999999999999 444999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
+.....++|..++|.+++++.++.|||+.|++..+...+..+......+
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999887765555554444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=218.04 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=137.4
Q ss_pred hHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008177 22 GNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCN 101 (575)
Q Consensus 22 ~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 101 (575)
.+...+++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+++++.+
T Consensus 13 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~---------- 81 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAGA---------- 81 (399)
T ss_pred hhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHcC----------
Confidence 34444567889999999999999999999999999999999997 9999999999999999999988754
Q ss_pred CCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008177 102 MLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVW 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~ 181 (575)
.+.++++|++.|++.+...+...+++.|++|+++ |++++++.+...++|..+++.++++
T Consensus 82 ------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~ 140 (399)
T TIGR00893 82 ------------------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASE---RATAVSIFNSAQGLGGIIGGPLVGW 140 (399)
T ss_pred ------------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH---HHHHHHHHHHhchHHHHHHHHHHHH
Confidence 7779999999999999999999999999999544 9999999999999999999999999
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 182 VQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 182 l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+.+..+||+.|++.++..++..+...+
T Consensus 141 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 141 ILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 999999999999887765555444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=232.34 Aligned_cols=154 Identities=13% Similarity=0.036 Sum_probs=124.7
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 008177 33 MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNC 112 (575)
Q Consensus 33 ~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (575)
++.++.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++...-. +
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~-----------------~ 111 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT-----------------S 111 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc-----------------c
Confidence 389999999999999999999999999999997 9999999999999999888876421000 0
Q ss_pred cc-ccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 008177 113 QE-AKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQ-------- 183 (575)
Q Consensus 113 ~~-~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~-------- 183 (575)
.. .+...+..++++|+++|++.|+..+...++++|++|+++ |++++++.+.+..+|..+++.+++.+.
T Consensus 112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 188 (479)
T PRK10077 112 IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWL 188 (479)
T ss_pred ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 00 011235668899999999999999999999999999554 999999999999999999988766543
Q ss_pred hcccchhHHHHHHHHHHHHHHHHH
Q 008177 184 THSGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 184 ~~~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
+..|||+.|++.++..++..+..+
T Consensus 189 ~~~gWr~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 189 NTDGWRYMFASEAIPALLFLMLLY 212 (479)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHH
Confidence 356899999988776666554433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=228.56 Aligned_cols=148 Identities=15% Similarity=0.058 Sum_probs=122.2
Q ss_pred cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcc
Q 008177 33 MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNC 112 (575)
Q Consensus 33 ~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (575)
.+.++.+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.++++++.+..
T Consensus 51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~------------------- 110 (502)
T TIGR00887 51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS------------------- 110 (502)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc-------------------
Confidence 346677889999999999999999999999997 999999999999999999888753200
Q ss_pred ccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q 008177 113 QEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT-------- 184 (575)
Q Consensus 113 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~-------- 184 (575)
...+...+++.|+++|++.|...+..+.+++|++|+++ |+++.++.+....+|..+++.++..+..
T Consensus 111 ---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~---Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 184 (502)
T TIGR00887 111 ---PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW---RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184 (502)
T ss_pred ---cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 01125679999999999999999999999999999555 9999999999999999999988765532
Q ss_pred ---------------cccchhHHHHHHHHHHHHHHHH
Q 008177 185 ---------------HSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 185 ---------------~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
.++||++|.+.++..++.++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred ccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 2479999988777665554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-22 Score=221.01 Aligned_cols=172 Identities=13% Similarity=0.015 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhh-HHHH-----HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSK-SANI-----VTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV 78 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~-~~~i-----~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~ 78 (575)
.......+++.+.+.. ..+..+++.++++.+..+ .+++ .+...++..++++++|+++||+ |||+++.++.++
T Consensus 19 ~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~l 96 (490)
T PRK10642 19 TAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 3444555666554443 455566888888644432 2222 4666788999999999999997 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 79 ELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
++++.++++++++..++. .....++++.|+++|++.|+..+...++++|++|+++ |+
T Consensus 97 ~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~---Rg 153 (490)
T PRK10642 97 MSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK---RG 153 (490)
T ss_pred HHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC---Cc
Confidence 999999999986522100 0011248899999999999999999999999999555 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--------hcccchhHHHHHHHHHHH
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQ--------THSGMDIGFGVSAAAMAV 201 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~i 201 (575)
++.++...+..+|..+|+.+...+. .++|||++|++.++..++
T Consensus 154 ~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 154 FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 9999988888888888876654443 257999999997654443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-23 Score=210.37 Aligned_cols=370 Identities=12% Similarity=0.090 Sum_probs=255.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
..++.+....|.....=+.....+| -+.+++|.|..++|++++.|.+++.++.|+...+.||+ .||+.++..+.++++
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALFIV 90 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence 4556666677777777776766666 45679999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.+++++++| +..++++|++.|+..|...+...++.++..|+++ |+++.
T Consensus 91 ~n~l~alAp~----------------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---~~~Ai 139 (394)
T COG2814 91 SNLLSALAPS----------------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---RGRAL 139 (394)
T ss_pred HHHHHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---hhhHH
Confidence 9999999876 8889999999999999999999999999999665 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCC--CchhhHHHHHHHHHhhhcc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRG--SIFTPIAQVFVAAITKRKQ 239 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 239 (575)
++...+..++.++|..++.++.+.+|||..|++-+...++.++..+...| +++.++. .+..+..+.
T Consensus 140 aiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~---------- 207 (394)
T COG2814 140 ALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLRL---------- 207 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH----------
Confidence 99999999999999999999999999999999988888877777776655 1111111 000000000
Q ss_pred cCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH
Q 008177 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT 319 (575)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (575)
..+.+.........+..
T Consensus 208 ---------------------------------------------------------------l~~p~v~~~l~~t~l~~ 224 (394)
T COG2814 208 ---------------------------------------------------------------LRRPGVLLGLLATFLFM 224 (394)
T ss_pred ---------------------------------------------------------------hcCchHHHHHHHHHHHH
Confidence 00111222222233333
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGL 398 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~ 398 (575)
..++..|.+...+.... . |+.. ..++.-....+..+++..+.+++. || ++.+.+...+
T Consensus 225 ~g~F~~ftYi~P~L~~v------~---g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~----dr--------~~~~~l~~~~ 283 (394)
T COG2814 225 TGHFALYTYIRPFLESV------A---GFSVSAVSLVLLAFGIAGFIGNLLGGRLA----DR--------GPRRALIAAL 283 (394)
T ss_pred cchhhhHHhHHHHHHHc------c---CCCHhHHHHHHHHHHHHHHHHHHHHhhhc----cc--------cchhHHHHHH
Confidence 44444444443322211 1 2222 234455556666666666665544 33 2334455666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHhHH
Q 008177 399 FVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSL--EGMQSFLTAMTYCSYSFG 476 (575)
Q Consensus 399 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P--~~~rg~~~g~~~~~~~lg 476 (575)
.+..+.++.+.... .+.+......++.++.... ....+..+..+ ++.++.+++++....++|
T Consensus 284 ~l~a~~~l~l~~~~-------------~~~~~~~~~~~~wg~a~~~---~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlg 347 (394)
T COG2814 284 LLLALALLALTFTG-------------ASPALALALLFLWGFAFSP---ALQGLQTRLARLAPDAADLAGSLNVAAFNLG 347 (394)
T ss_pred HHHHHHHHHHHHhc-------------chHHHHHHHHHHHHHHhhh---hhhHHHHHhcccCCCchHHHHHHHHHHHHHH
Confidence 66666666655542 1223333333443333333 33444444444 577899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008177 477 FYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535 (575)
Q Consensus 477 ~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 535 (575)
..+|..+.|.+.+. .++....++.+.+.+++++..+...+
T Consensus 348 ia~GA~lGG~v~~~-------------------~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 348 IALGAALGGLVLDA-------------------LGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHh-------------------hchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998653 33445677777777777666655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=224.23 Aligned_cols=392 Identities=11% Similarity=-0.000 Sum_probs=234.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLS 87 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~ 87 (575)
....+...+..-.+..-+| .+.+++|.+..+.+|+.+.|.++...+.+++|+++||+ |||++++++.+++.++.++++
T Consensus 12 ~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~~~~ 89 (495)
T PRK14995 12 VLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASLAAA 89 (495)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333444444 55679999999999999999999999999999999997 999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
++++ .+.++++|+++|+|.++..+.....+.+.+++ +++|+++++++...
T Consensus 90 ~a~~----------------------------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~--~~~r~~~~g~~~~~ 139 (495)
T PRK14995 90 FSPT----------------------------ASWLIATRALLAIGAAMIVPATLAGIRATFTE--EKQRNMALGVWAAV 139 (495)
T ss_pred HcCC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence 9765 77799999999999999888888888777632 34499999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCccc
Q 008177 168 FCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYI 247 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (575)
.++|..+||.+++++.++.|||+.|++.....++.++...+..|+.+++ ++++.+......... ........
T Consensus 140 ~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~-~~~~l~~~----- 211 (495)
T PRK14995 140 GSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIV-AILLLVYS----- 211 (495)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHH-HHHHHHHH-----
Confidence 9999999999999999999999999998776666555544444432111 112222221111000 00000000
Q ss_pred ccccccccchhhhhhcCCCCcccCcccccchh----h---hhhhhcccCCCCCCCcccchhhHHHHHHHhhH-HHHHHHH
Q 008177 248 LHGSQNNIATNRVLAISPNNRNLLHTEKFRFL----D---KACIKVQDGANESPWKLCTVTQVEQVKIIMSV-VPIFACT 319 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~ 319 (575)
+....++. +....... . .......+.....|.. +.+-.++ +..... ...+...
T Consensus 212 ---------------~~~~~~~~-~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~--~~~lf~~-~~~~~~~~~~~~~~ 272 (495)
T PRK14995 212 ---------------AKTALKGF-LSLWVTSLTLLTGALLLGLFIRTQLAASRPMI--DMRLFTH-RIILSGVVMAMTAM 272 (495)
T ss_pred ---------------HHhccccC-CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--CHHHhCC-cccHHHHHHHHHHH
Confidence 00000000 00000000 0 0000000000001110 0000111 111111 1111111
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGL 398 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~ 398 (575)
..++......+.++. ... |++. ..+.......+...+..++.+++. +|.++| +.+..|+
T Consensus 273 ~~~~~~~~~~~~~lq-------~v~--g~s~~~ag~~~~~~~~~~~~~~~~~g~l~----~r~g~~-------~~~~~g~ 332 (495)
T PRK14995 273 ITLVGFELLMAQELQ-------FVH--GLSPLEAGMFMLPVMVASGFSGPIAGILV----SRLGLR-------LVATGGM 332 (495)
T ss_pred HHHHHHHHHHHHHHH-------HHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCch-------HHHHHHH
Confidence 111111111111111 000 1111 123333444455555666666555 454332 3356677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHH
Q 008177 399 FVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFY 478 (575)
Q Consensus 399 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~ 478 (575)
++..+++..+.... ...+.+...+..++.|++.+...+.....+.+.+|++.++.+.+++++.+.+|+.
T Consensus 333 ~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 333 ALSALSFYGLAMTD-----------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred HHHHHHHHHHHHhc-----------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 77766665544331 1123344455678889999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 008177 479 LSSLLVSLVNK 489 (575)
Q Consensus 479 lg~~l~~~i~~ 489 (575)
+|+.+.+.+.+
T Consensus 402 ~G~ai~g~i~~ 412 (495)
T PRK14995 402 LGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHH
Confidence 99999888755
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=212.14 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHH-HHHHHHHHHHHH
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLI-FGFVELSGFILL 86 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~-~~~~~~i~~~~~ 86 (575)
+...++..++.....+.++.|+++++|.|+.+.+++.+.+.+...+.+++.|+++||+ ||||.++. +.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 4557788888889999999999999999999999999999999999999999999997 99987665 455556666777
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh--HHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST--YFNVA 164 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~ 164 (575)
+++++ ++.+++.|+++|.+.+...|...++..|..|+++ |.. ..+..
T Consensus 82 ~~~~~----------------------------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~ 130 (375)
T TIGR00899 82 AWNRN----------------------------YFLLLVLGVLLSSFASTANPQLFALAREHADRTG---REAVMFSSVM 130 (375)
T ss_pred Hhcch----------------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc---hhhHHHHHHH
Confidence 77644 5667788988888878788888888888877443 443 35777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+...++|..++|.+++++.+..|||+.|++.++..++..+...+
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999899999999988766555554444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=215.74 Aligned_cols=166 Identities=22% Similarity=0.296 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLS 87 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~ 87 (575)
+...++..+......+.++.++.+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||++++++.++.+++..++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556677777777777888788899999999999999999999999999999999997 999999999999999966666
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
++++ .+.+++.|++.|++.+...+...+++.|++|+++ |++++++.+.+
T Consensus 81 ~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 129 (352)
T PF07690_consen 81 FASN----------------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE---RGRAFGILSAG 129 (352)
T ss_dssp HHCC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC---HHHHHHHHHHH
T ss_pred hhhh----------------------------HHHHhhhccccccccccccccccccccccchhhh---hhhccccccch
Confidence 6533 4579999999999999999999999999999655 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008177 168 FCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~ 205 (575)
.++|..++|.+++++.+..+||+.|++.++..++..+.
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 99999999999999998899999999998877777654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=216.28 Aligned_cols=158 Identities=11% Similarity=-0.034 Sum_probs=137.2
Q ss_pred hhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 19 AAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 19 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
....++..+.+++++|+++.+.+++.+.+.+++.+++++.|+++||+ |||+++..+++++.++..+++++.+
T Consensus 24 ~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~------- 95 (412)
T TIGR02332 24 RINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFATG------- 95 (412)
T ss_pred hhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 33445556688999999999999999999999999999999999997 9999999999999999999998765
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
...+++.|+++|++.++..|...+++.|++|++ +|+++.++++...++|..+++.+
T Consensus 96 ---------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 96 ---------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAY---FRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred ---------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999944 49999999999999999999999
Q ss_pred HHHHhh------cccchhHHHHHHHHHHHHHHHHHH
Q 008177 179 LVWVQT------HSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 179 ~~~l~~------~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++++.+ ..|||+.|++.++..++..+...+
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 998864 369999999977665544443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=216.01 Aligned_cols=378 Identities=12% Similarity=0.079 Sum_probs=240.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhh-----HHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSK-----SANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFG 76 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~-----~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 76 (575)
|.....+...++...+.+...+.+|.|++ ++|.+..+ .+++.+.+.++..+++++.|+++||+ |||+.++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34556667777888888888899999886 68888665 48888999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhh
Q 008177 77 FVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKK 156 (575)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 156 (575)
++..++..++++..+ ++.+++.|++.|++.+ ..+...+++.|++|+++
T Consensus 92 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--- 139 (408)
T PRK09874 92 LGMGIVMVLMGLAQN----------------------------IWQFLILRALLGLLGG-FVPNANALIATQVPRNK--- 139 (408)
T ss_pred HHHHHHHHHHHHHhh----------------------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh---
Confidence 999998888877644 6678899999999765 45777888999998544
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCch-hhHHHHHHHHHh
Q 008177 157 LSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIF-TPIAQVFVAAIT 235 (575)
Q Consensus 157 r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (575)
|+++.++.+...++|..++|.+++.+.+..+|++.|++.++..++..+...+..++.. ++.+++. .+..+.
T Consensus 140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 211 (408)
T PRK09874 140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHMREV------ 211 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHHHHH------
Confidence 9999999999999999999999999998899999999888766655554443332211 0100000 000000
Q ss_pred hhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHH-
Q 008177 236 KRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVP- 314 (575)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 314 (575)
... + ++.+.......
T Consensus 212 ----------------------------------------------~~~----------~--------~~~~~~~~~~~~ 227 (408)
T PRK09874 212 ----------------------------------------------VTS----------L--------KNPKLVLSLFVT 227 (408)
T ss_pred ----------------------------------------------HHh----------C--------cCCchHHHHHHH
Confidence 000 0 00011110110
Q ss_pred HHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHH
Q 008177 315 IFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRV 394 (575)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~ 394 (575)
...............+.+.... ..... ........+..+..+..++..+..+++. +|+++| +.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~----dr~g~~-------~~~ 291 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVREL----AGNVS-NIAFISGMIASVPGVAALLSAPRLGKLG----DRIGPE-------KIL 291 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccccc-------hhH
Confidence 0111111101101111111110 00000 0000011222233344444555555444 454433 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHh
Q 008177 395 GVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYS 474 (575)
Q Consensus 395 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 474 (575)
..++++..++++...... +.+.+.+..++.|++.+...|...+...+..|++.||+.+++.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 292 ITALIFSVLLLIPMSFVQ--------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRD 357 (408)
T ss_pred HHHHHHHHHHHHHHHHhc--------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHH
Confidence 455555555444433321 334445566778888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 475 FGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 475 lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
+|..+++.+.+.+.+.. ++...|++.+++.+++.+..+...
T Consensus 358 ~g~~~gp~~~G~l~~~~-------------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 358 IGNVTGPLMGAAISANY-------------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHhhHHHHHHHHhhc-------------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875321 234567777777777766655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=212.09 Aligned_cols=357 Identities=13% Similarity=0.049 Sum_probs=226.5
Q ss_pred hhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 19 AAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 19 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
+...+.+| .+++++|+|..+.+++.+.+.+++.+++++.|+++||+ |||++++.+..+++++.++++++++
T Consensus 26 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~------- 96 (393)
T PRK09705 26 TSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ------- 96 (393)
T ss_pred hccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc-------
Confidence 44444455 56789999999999999999999999999999999997 9999999999999999999999866
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
+..++++|+++|+|.+...+....++.|++| ++ |+++.+++..+.++|..+++.+
T Consensus 97 ---------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~---~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 97 ---------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR---TPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred ---------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc---chhHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999886 44 8999999999999999999999
Q ss_pred HHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccch
Q 008177 179 LVWVQTHS-GMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIAT 257 (575)
Q Consensus 179 ~~~l~~~~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (575)
++++.++. +||..+.+.++..++.+...+...++ +|++++ ++. . .
T Consensus 152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------------~~~-~---------~- 197 (393)
T PRK09705 152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH-------------------KTT-T---------T- 197 (393)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc-------------------CCC-c---------C-
Confidence 99988875 89988766554433333322221111 111000 000 0 0
Q ss_pred hhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeee
Q 008177 258 NRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQG 337 (575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (575)
..+.. .+.+.+.......+....++....+.+.+...+
T Consensus 198 ------------------------------------~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~- 235 (393)
T PRK09705 198 ------------------------------------PVRVV-----FTPRAWTLGVYFGLINGGYASLIAWLPAFYIEI- 235 (393)
T ss_pred ------------------------------------Ccccc-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 00000 001111111112222223333333333333211
Q ss_pred ccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 338 SAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRR 416 (575)
Q Consensus 338 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~ 416 (575)
|.+. ..+.......+..+++..+.+++. +|.++| +.+..++.+..+++..+....
T Consensus 236 ---------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~----~r~~~~-------~~~~~~~~l~~~~~~~~~~~~---- 291 (393)
T PRK09705 236 ---------GASAQYSGSLLALMTLGQAAGALLMPAMA----RHQDRR-------KLLMLALVLQLVGFCGFIWLP---- 291 (393)
T ss_pred ---------CCChhhhhHHHHHHHHHHHHHHHHHHHHH----hhccch-------HHHHHHHHHHHHHHHHHHHcc----
Confidence 1111 122333444455555555554433 454332 335556666656555443321
Q ss_pred hhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCC
Q 008177 417 TAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSL-EGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTS 495 (575)
Q Consensus 417 ~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~ 495 (575)
.+...+ ..++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+..+.
T Consensus 292 ---------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~-- 358 (393)
T PRK09705 292 ---------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN-- 358 (393)
T ss_pred ---------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 111111 1234566666666766666667774 67899999999999999999999999998764331
Q ss_pred CCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 496 SSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 496 ~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
+...|.+.+..+++..+..+.+.++++
T Consensus 359 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 359 ----------------YLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHhccccc
Confidence 223455656666666555555555433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=215.03 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=134.1
Q ss_pred hhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008177 17 AIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLR 96 (575)
Q Consensus 17 ~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (575)
..|.. +.+.+++.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.++++++++
T Consensus 18 ~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~----- 90 (377)
T TIGR00890 18 YVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIADS----- 90 (377)
T ss_pred HHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHHH-----
Confidence 34444 4456678889999999999999999999999999999999997 9999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 008177 97 PSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIAL 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 176 (575)
++.+++.|++.|++.+...+.....+.|++| ++ |+++.+++..+.++|..+++
T Consensus 91 -----------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~~~~~ 143 (377)
T TIGR00890 91 -----------------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK---RGLASGIIIGGYGLGSFILS 143 (377)
T ss_pred -----------------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc---cHHHHHHHHHhcchhHhHHH
Confidence 7778999999999999888888888888886 33 89999999999999988877
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 177 TLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 177 ~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+.+.+.+..|||+.|++.++..++..+...+
T Consensus 144 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 144 PLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777789999999888766555544443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=216.04 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhhhhh---hHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAV---GNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~---~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++...++.....|.. .+...+|+.++ |+|+.+.+++.+.+.++..++++++|+++||+ |||++++++.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i 105 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHH
Confidence 44444444444444433 23445577877 99999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++++... ..+...+++.|++.|++.|...+.....+.|++|+++ |+++.
T Consensus 106 ~~~~~~~~~~~------------------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~---r~~~~ 158 (452)
T PRK11273 106 VMLFMGFVPWA------------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIV 158 (452)
T ss_pred HHHHHHhhhcc------------------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH---HHHHH
Confidence 99888875310 1235668889999999999988888889999999554 99999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQL-IALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~lg~~-~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++++.+.++|.. .+|.++..+....|||+.|++.++..++..+...+
T Consensus 159 ~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 159 SVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 45554434434459999999877665554443333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-22 Score=210.74 Aligned_cols=169 Identities=14% Similarity=0.064 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
....+....++.....|...+.+|.+ .+++|+++.+.++..+.+.++..+++++.|+++||+ |||++++.+.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~ 98 (394)
T PRK10213 21 AVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLS 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHH
Confidence 33444444444555666666666654 568999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.++++++++ .+.+++.|+++|++.|...+...+++.|++|+++ |+++.+
T Consensus 99 ~~~~~~~~~----------------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---~~~a~~ 147 (394)
T PRK10213 99 CLLVSFANS----------------------------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT---VPKALS 147 (394)
T ss_pred HHHHHHHCh----------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH---HHHHHH
Confidence 999888654 7789999999999999999999999999999544 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
+...+.++|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 148 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 148 VIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=219.97 Aligned_cols=399 Identities=11% Similarity=0.082 Sum_probs=241.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
....+....++..+....+.+.+| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.++++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 344444555555555444444444 56678999999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.++++++++ ...+++.|+++|++.+...+...+++.|++|+++ |+++.+
T Consensus 81 ~~~~~~~~~----------------------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~ 129 (485)
T TIGR00711 81 SLLCGVAPN----------------------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK---RGRAMA 129 (485)
T ss_pred HHHHhCcCC----------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH---HHHHHH
Confidence 999988755 6778999999999999999999999999999544 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhh-hcccC
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITK-RKQIC 241 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (575)
+++....+|..++|.+++++.++.|||+.|++.++..++..+...+..++.++ ++.+..+.....+...... .....
T Consensus 130 ~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~ 207 (485)
T TIGR00711 130 IWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGL 207 (485)
T ss_pred HHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877666555544444333211 1112222222111100000 00000
Q ss_pred CCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhh------hhcccCCCCCCCcccchhhHHHHHHHhhHHHH
Q 008177 242 PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKAC------IKVQDGANESPWKLCTVTQVEQVKIIMSVVPI 315 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (575)
.+... ..+...+......... ....+...+.+.. ..+...+++........
T Consensus 208 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 264 (485)
T TIGR00711 208 SEGPE---------------------RGWFDSNEILILSITGLVAIIAFVVWELTDDNPLV--DLRLFKYRNFTIGCVYM 264 (485)
T ss_pred hhCCC---------------------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCcc--CHHHHcCCChHHHHHHH
Confidence 00000 0000000000000000 0000000001100 00111111111111111
Q ss_pred HHHHHHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHH
Q 008177 316 FACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRV 394 (575)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~ 394 (575)
+......+......+.++.. .. |++. ..+.......+..+++.++.+++. +|.++| +.+
T Consensus 265 ~~~~~~~~~~~~~~p~~~~~-------~~--g~s~~~~g~~~~~~~~~~~~~~~~~g~l~----~r~~~~-------~~~ 324 (485)
T TIGR00711 265 SLLGLGLYGSFYLLPLYLQQ-------VL--GYTALQAGLHILPVGLAPMLSSPIAGRMG----DKIDPR-------KLV 324 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCcH-------HHH
Confidence 22222222222222221111 01 1111 123344445555666666666554 444322 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHh
Q 008177 395 GVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYS 474 (575)
Q Consensus 395 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 474 (575)
.++..+.++++.++.... +...+.+......++.|++.+...+.......+..|++.||+++|+.++.+.
T Consensus 325 ~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 394 (485)
T TIGR00711 325 TIGLILYAVGFYWRAFTF----------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQ 394 (485)
T ss_pred HHHHHHHHHHHHHHhccC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHH
Confidence 667766666666554211 0123344455567788999988887778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 008177 475 FGFYLSSLLVSLVNK 489 (575)
Q Consensus 475 lg~~lg~~l~~~i~~ 489 (575)
+|+.+|+.+.+.+.+
T Consensus 395 ~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 395 LGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=220.96 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=128.8
Q ss_pred HHhhhccCCC---hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008177 27 TYVFNEMHFP---LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNML 103 (575)
Q Consensus 27 ~yl~~~~~~s---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 103 (575)
..+.+++|++ +.+.+++.+.+.++..+++++.|+++||+ |||++++++.++..++.++++++.+
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------------ 179 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSPN------------ 179 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHccc------------
Confidence 3467799999 99999999999999999999999999997 9999999999999999999988755
Q ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008177 104 TDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQ 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 183 (575)
++.+++.|++.|++.++..+...+++.|++|+++ |+.+.++...+..+|.++++.++..+.
T Consensus 180 ----------------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 180 ----------------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ---RAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred ----------------HHHHHHHHHHHHhhccchHHHHHHHhheecChhh---hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7779999999999999999999999999999555 999999998899999999999876665
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHH
Q 008177 184 THSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 184 ~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+ ||+.|++.++..++..+..++
T Consensus 241 ~---wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 241 D---WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHh
Confidence 3 999999887766655554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-22 Score=206.12 Aligned_cols=347 Identities=18% Similarity=0.201 Sum_probs=253.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....+...+..+...+..+.|.+ ++|.++.+.+++.+...++..+++++.|+++||+ |||+.+..+.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 44566677888888888888888875 6799999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
++...++ ...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 80 ~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 128 (352)
T cd06174 80 LLAFASS----------------------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE---RGRALGLF 128 (352)
T ss_pred HHHHhcc----------------------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc---hhhhhhHH
Confidence 9888644 6778999999999999999999999999999655 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCC
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSN 244 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (575)
+...++|..++|.+++.+.+..+|++.|++.+...++..+...+..+
T Consensus 129 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 175 (352)
T cd06174 129 SAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 99999999999999999999899999999888776666554433210
Q ss_pred cccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHH
Q 008177 245 TYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNT 324 (575)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (575)
+........+........
T Consensus 176 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 193 (352)
T cd06174 176 --------------------------------------------------------------LLLLLALAFFLLSFGYYG 193 (352)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHhHHHH
Confidence 000000001111111111
Q ss_pred HHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHH
Q 008177 325 ILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFS 404 (575)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~ 404 (575)
.....+.+.... . +.+ ....+.......+...++.++.+++. +|.++|+ ..+..+.++..++
T Consensus 194 ~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~------~~~~~~~~~~~i~ 255 (352)
T cd06174 194 LLTYLPLYLQEV-L----GLS---AAEAGLLLSLFGLGGILGALLGGLLS----DRLGRRR------LLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHh-c----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhh------HHHHHHHHHHHHH
Confidence 111111111110 0 100 11234455556666666666666655 4443331 0466777777777
Q ss_pred HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHH
Q 008177 405 MVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLV 484 (575)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~ 484 (575)
.+.+.... +.+...+..++.+++.+...+...++..|..|++.|++.+|+.+..+.+|..+++.+.
T Consensus 256 ~~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 256 LLLLALAP--------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HHHHHHhc--------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665542 3455667788899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 008177 485 SLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNY 530 (575)
Q Consensus 485 ~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~ 530 (575)
+.+.+. .++...|++.+.+.+++.+..
T Consensus 322 g~l~~~-------------------~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 322 GLLLDT-------------------GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHhcc-------------------cCcchHHHHHHHHHHHHHHHh
Confidence 987531 122345667667666665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-22 Score=211.56 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=126.6
Q ss_pred HHHHHHhhhhhhHHHHHHhhhccC---CChhhHHHHHHHHHH---HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 11 QAFEMTAIAAVGNNLITYVFNEMH---FPLSKSANIVTNFIG---TVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~yl~~~~~---~s~~~~~~i~~~~~~---~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
.+++.+.... .+++.+++.++++ .+..+.+.+.+.+.. +..++++++|+++||+ |||+++..+.+++.++.+
T Consensus 31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~ 108 (432)
T PRK10406 31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL 108 (432)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 4455555444 5666778888874 555554454444444 4459999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+++++++..+ ........+++.|+++|++.|+..|...++++|++|+++ |+++.++.
T Consensus 109 ~~~~~~~~~~--------------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~---rg~~~~~~ 165 (432)
T PRK10406 109 VIACLPGYET--------------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR---KGFYASFQ 165 (432)
T ss_pred HHhhcCCchh--------------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc---ccHHHHHH
Confidence 9998754211 000123468899999999999999999999999999655 99999998
Q ss_pred HHHHHHHHHHHHHHHHHHh--------hcccchhHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQ--------THSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~i~ 202 (575)
+.+.+.|..+++.+...+. +.+|||++|++.++..++.
T Consensus 166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8888888888887765543 2579999999877655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=215.70 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=139.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
........+...+..+.. .+...++++++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 334444444455555444 4444567789999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++++++++ .+.+++.|+++|++.|...+...+++.|++|+++ |+++.++
T Consensus 98 ~~~~~~~~----------------------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---r~~~~~~ 146 (426)
T PRK12307 98 GLSGLASG----------------------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---KSKASAF 146 (426)
T ss_pred HHHHHHhH----------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH---hhHhhhH
Confidence 99998765 6779999999999999999999999999999554 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAA 198 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~ 198 (575)
+..+..+|.++++.+.+.+.+..|||+.|++.++.
T Consensus 147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 99999999999999999998889999999876543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=209.02 Aligned_cols=401 Identities=13% Similarity=0.074 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHhhhhhhHH---HHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNN---LITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+-++...++...++|-+..+ ..+++.++.++|..|.|++.+.+.+++.++-.+.|.++||. +.|..+-+++++.++
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 44667777888888877554 55788899999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
..++++++++ ..++.+..++.|..+|.-.|.+...++.+++++| ||+..
T Consensus 107 ~nil~Gfs~s----------------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e---RG~~~ 155 (448)
T COG2271 107 VNILFGFSPS----------------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE---RGTWW 155 (448)
T ss_pred HHHHHhhhhH----------------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc---cCceE
Confidence 9999999866 7778888899999999999999999999999555 99999
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcc
Q 008177 162 NVAYFAFCMGQLIALTLL--VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (575)
++++.+.|+|+.+.|.+. +++..+.+||..|+++++..++..+.+++..+ ..|++..++++.+-.
T Consensus 156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r----d~Pqs~GLP~ie~~~--------- 222 (448)
T COG2271 156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR----DRPQSEGLPPIEEYR--------- 222 (448)
T ss_pred EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCCHHHhh---------
Confidence 999999999999999999 99999999999999998865544444443222 233333333222110
Q ss_pred cCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH
Q 008177 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT 319 (575)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (575)
+++.+.++++++.+ . .+ .|+.+.+.-..+...++..+.-.+..
T Consensus 223 ---~d~~e~~~~~~~~~------------~------ls----------------~~~i~~~YVL~Nk~iW~la~a~vfvY 265 (448)
T COG2271 223 ---GDPLEIYEEEKENE------------G------LT----------------AWQIFVKYVLKNKLIWLLALANVFVY 265 (448)
T ss_pred ---cCchhhhhhhccCC------------C------cc----------------HHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 00000000000000 0 00 01111111122222333333344445
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGL 398 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~ 398 (575)
+.-+.+..+.+.+.... . +++. ...+.........+.+..+.+++.|++.+. ||. + .-.+.+
T Consensus 266 ivR~gi~dW~p~YL~e~-k--------~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg--rR~----p--~~~i~~ 328 (448)
T COG2271 266 VVRYGINDWGPLYLSEV-K--------GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG--RRG----P--MALIFM 328 (448)
T ss_pred HHHHHHhhhHHHHHHHh-c--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc--ccc----h--HHHHHH
Confidence 55555555555433321 1 2222 345566777788888888888888766432 221 1 122223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhH-HH
Q 008177 399 FVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSF-GF 477 (575)
Q Consensus 399 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~ 477 (575)
+...++.+.+-.. +..+.+...+.++..|+....-....-....|.+|++.-|++.|+..+...+ |.
T Consensus 329 ~~i~~~~~~~w~~------------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 329 LLITASLVLYWLA------------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA 396 (448)
T ss_pred HHHHHHHHHHHcC------------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence 3333333332222 1224444444555555544333333344568999999999999999988888 77
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008177 478 YLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535 (575)
Q Consensus 478 ~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 535 (575)
.++....+++.+. .+| ...|.++.+.++++.++.+.+.+
T Consensus 397 ~~a~~~~g~i~d~--------~gW-----------~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 397 ALAGLPLGYIADT--------WGW-----------DGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HhcCCcceeeEec--------CCC-----------cchHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766431 245 34566766666666666555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=219.27 Aligned_cols=159 Identities=8% Similarity=-0.058 Sum_probs=129.7
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
+...+.+.+++|++..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++..++.++.+....
T Consensus 49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~----------- 116 (467)
T PRK09556 49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG----------- 116 (467)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445567889999999999999999999999999999999997 9999999998888877777665310
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
....+...+++.|+++|++.+...|...++++|++|+++ |+++++++..+.++|.++++.+..++
T Consensus 117 ------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 117 ------------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK---RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred ------------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc---eeeeEEeeecccchhhhHHHHHHHHH
Confidence 001237789999999999999999999999999999665 99999999999999999999998777
Q ss_pred hhcc---cchhHHHHHHHHHHHHHHHHHH
Q 008177 183 QTHS---GMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 183 ~~~~---g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+.. +|+..|.+.++..++..+..++
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 6543 6888888766655444333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=209.05 Aligned_cols=174 Identities=10% Similarity=0.060 Sum_probs=150.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+.++.+....+......+...+.+|. +++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 45666777777777777777777765 4678999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++++++ .+.+++.|+++|++.+...+....++.|++|+++ |+++.
T Consensus 81 ~~~l~~~~~~----------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 129 (382)
T PRK10091 81 GNAMFTLSSS----------------------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK---VTAAV 129 (382)
T ss_pred HHHHHHHhCc----------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH---hhHHH
Confidence 9999998765 7779999999999999988888899999998544 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+++..+..+|..++|.+++++.+..|||+.|++.++..++..+....
T Consensus 130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999899999999987765555443333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=220.52 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILL 86 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~ 86 (575)
.....++..+..+.+.+.++ ++.+++|+|..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~~~~~ 118 (476)
T PLN00028 41 SWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 33334444455555554444 66789999999999999999999999999999999997 99999999999999999888
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
+++.+ ...+++.|++.|++.+... ....+++|++|+++ |+++.++.+.
T Consensus 119 ~~~~s----------------------------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~---rg~a~g~~~~ 166 (476)
T PLN00028 119 SLVSS----------------------------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI---VGTANGIAAG 166 (476)
T ss_pred HHhcC----------------------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh---eeHHHHHHHH
Confidence 88755 5668889999999887654 45567899999544 9999999887
Q ss_pred HHHHHHHHHHHHHHHHh----h-----cccchhHHHHHHHHHHHHHHHHHH
Q 008177 167 AFCMGQLIALTLLVWVQ----T-----HSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~----~-----~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
..++|..+++.+.+.+. + ..|||+.|++.++..++..+..++
T Consensus 167 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 167 WGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77788877766655442 2 258999999887766555444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=207.28 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=135.1
Q ss_pred hhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008177 17 AIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLR 96 (575)
Q Consensus 17 ~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (575)
+.....+.++. +.+++|.|+.+.++..+.+.++..+++++.|+++||+ ||||+++++.++..++.++++++++
T Consensus 28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~----- 100 (406)
T PRK15402 28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQS----- 100 (406)
T ss_pred hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 44445555554 4578999999999999999999999999999999997 9999999999999999998888654
Q ss_pred CCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 008177 97 PSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIAL 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 176 (575)
.+.+++.|+++|++.+...+...+++.|.+|+++ |.+..++......+|..++|
T Consensus 101 -----------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~ 154 (406)
T PRK15402 101 -----------------------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD---AIKITALMANVALLAPLLGP 154 (406)
T ss_pred -----------------------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999888889999999999554 88888988888889999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 177 TLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 177 ~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+++++.++.+||+.|++.++..++..+....
T Consensus 155 ~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 155 LVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999999877766655544433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=208.70 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhcc--CCChhhHHHHHH-----HHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEM--HFPLSKSANIVT-----NFIGTVFLLSLFGGFLSDSYLGSFWTMLIF 75 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--~~s~~~~~~i~~-----~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 75 (575)
.++......+++.+....+....+.++.+++ +.++. .+++.+ ...++..+++++.|+++||+ |||++++.+
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~~~ 100 (438)
T PRK09952 23 AALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHHHH
Confidence 3444555666666666555555566666665 67766 455432 33455678888899999997 999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchh
Q 008177 76 GFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESK 155 (575)
Q Consensus 76 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 155 (575)
.++++++.++++++++..+. .......+++.|+++|++.|+..+....++.|++|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-- 158 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTI--------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK-- 158 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHH--------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC--
Confidence 99999999999997652210 00112358889999999999999999999999999554
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hcccchhHHHHHHHHHH
Q 008177 156 KLSTYFNVAYFAFCMGQLIALTLLVWVQ--------THSGMDIGFGVSAAAMA 200 (575)
Q Consensus 156 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~ 200 (575)
|++..+..+.+..+|..++..+..++. +++|||++|++.++..+
T Consensus 159 -rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 159 -KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 999999888888899888877766654 25799999998776543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=210.22 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=142.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+.+.......+...+..+......+ .+++++|+++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence 3344555555566666655555555 56789999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++++++ +..+++.|++.|++.+...+...+++.|++|+++ |+++.
T Consensus 90 ~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---~~~~~ 138 (405)
T TIGR00891 90 GTLACGFAPG----------------------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL---RNKAS 138 (405)
T ss_pred HHHHHHHhcc----------------------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh---hhHHH
Confidence 9999888654 6778899999999999999999999999999555 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSG--MDIGFGVSAAAMAVG 202 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~i~ 202 (575)
++.+...++|..+++.+++.+.+..+ ||+.|++.++..++.
T Consensus 139 ~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 139 GLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999887766 999998766554444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=203.97 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~ 85 (575)
......+...+......+.+| .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+.+..+.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHHHH
Confidence 333344445555555555555 45678999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 86 LSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
++.+++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 87 ~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 135 (385)
T TIGR00710 87 LALSNN----------------------------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE---LSRIYSILM 135 (385)
T ss_pred HHHHcc----------------------------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH---HHHHHHHHH
Confidence 888754 6678899999999999999999999999999555 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
...++|..++|.+++++.++.+||+.|++.++..++..+...+
T Consensus 136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999899999999877765555554444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=219.01 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=127.6
Q ss_pred HHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 008177 26 ITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTD 105 (575)
Q Consensus 26 ~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 105 (575)
...+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++.+
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------- 106 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN-------------- 106 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh--------------
Confidence 3455679999999999999999999999999999999997 9999999999999999999888754
Q ss_pred CCCCCccccccchhHHHHH-HHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 106 TDGTQNCQEAKGYKALILY-LALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 184 (575)
.+.++ ..|++.|++.+...+...+++.++++ ++ |+++.++.+.+.++|..++|.+++++.+
T Consensus 107 --------------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~---r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 107 --------------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR---RPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred --------------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh---HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44444 45788999998876777788889885 33 8999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 008177 185 HSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 185 ~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
.+|||+.|++.++..+++.+..++.
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887766555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=214.98 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=129.1
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 008177 32 EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQN 111 (575)
Q Consensus 32 ~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (575)
+++++..+.|++.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++.++.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7899999999999999999999999999999997 9999999999999888888765432
Q ss_pred cccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchh
Q 008177 112 CQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHS-GMDI 190 (575)
Q Consensus 112 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~-g~~~ 190 (575)
.+...+++.|+++|++.+...|....+++|++|+++ |+++.++.+.+.++|..+++.+++++.+.. |||+
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~ 199 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE---RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPM 199 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 114568899999999999999999999999999554 999999999999999999999999999884 9999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008177 191 GFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 191 ~f~~~~~~~~i~~i~~~~~ 209 (575)
.|++.++..++..+..+..
T Consensus 200 ~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 200 IFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred ehhhhhHHHHHHHHHHHHH
Confidence 9999887665554444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=206.83 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=134.2
Q ss_pred hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008177 21 VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPC 100 (575)
Q Consensus 21 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (575)
......+++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.++++++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 104 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALATN--------- 104 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHccc---------
Confidence 334445566778999999999999999999999999999999997 9999999999999999888887644
Q ss_pred CCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008177 101 NMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLV 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 180 (575)
.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++...+.++|..+++.+++
T Consensus 105 -------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 105 -------------------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---RGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred -------------------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh---hchhHhhHhhHHHHHHHHHHHHHH
Confidence 6668899999999999999999999999999544 999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 181 WVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 181 ~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+..||++.|++.++..++..+....
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMR 190 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHH
Confidence 9999999999999886544444433333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=217.07 Aligned_cols=152 Identities=22% Similarity=0.298 Sum_probs=128.1
Q ss_pred HhhhccCCC--------hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008177 28 YVFNEMHFP--------LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSP 99 (575)
Q Consensus 28 yl~~~~~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 99 (575)
.+..+++++ ..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++.+++.+.++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~------- 124 (481)
T TIGR00879 53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA------- 124 (481)
T ss_pred cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 334455555 89999999999999999999999999997 99999999999999999998775431
Q ss_pred CCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 100 CNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
.+.+.+++.|+++|+|.+...+...++++|++|+++ |+++.++++.+.++|..+++.++
T Consensus 125 ------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 ------------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL---RGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ------------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh---hhhhhhHHHHHHHHHHHHHHHHH
Confidence 224578999999999999999999999999999555 99999999999999999999998
Q ss_pred ---HHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 180 ---VWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 180 ---~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+...+..+||+.|++.++..++.++..++
T Consensus 184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 66667789999999976655555444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=215.29 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~ 85 (575)
.+....++..+..+.. ..+.+++.+++|+|+.+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++
T Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 101 (496)
T PRK03893 24 AAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFSVGTLA 101 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHH
Confidence 3444444444544444 4444567789999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 86 LSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
++++.+ .+.+++.|++.|++.++..+...+++.|.+|++ +|+++.+++.
T Consensus 102 ~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~ 150 (496)
T PRK03893 102 CGFAPG----------------------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKH---LRNKASGFLI 150 (496)
T ss_pred HHHHhH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---HHHHHHHHHH
Confidence 988754 677899999999999999999999999999954 4999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAA 198 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~ 198 (575)
...++|..++|.+.+++.++.+||+.|++.++.
T Consensus 151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999875543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-21 Score=203.32 Aligned_cols=158 Identities=11% Similarity=0.124 Sum_probs=139.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++.++...++..++...+.+.+|.|+. ++|.|+.++|++.+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56788888999999999889999998886 7899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+++++++ .+.+++.|+++|++.++..+...+.+.+..+++ +|++++
T Consensus 84 ~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 132 (381)
T PRK03633 84 GCAGLGLMVG----------------------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR---NRGRLL 132 (381)
T ss_pred HHHHHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH---HHHHHH
Confidence 9999888755 677889999999999998888888888888854 499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGF 192 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f 192 (575)
++++.+.++|..+||.+++.+.+...|...+
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 9999999999999999999987754444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=203.03 Aligned_cols=164 Identities=19% Similarity=0.174 Sum_probs=139.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|+++.++..+++..++.......++.. .+++|.++.+.+++.+.+.+++.+..+++|+++||+ ||||+++++.+++++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 567778888888877666665656655 568999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++++.+ .++.|+++|++.+...|...+++.|++|+++ |+++.
T Consensus 81 ~~~~~~~~~~-------------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~---~~~a~ 126 (393)
T PRK11195 81 GCLLMLFGIH-------------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK---LVKAN 126 (393)
T ss_pred HHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---HHHHH
Confidence 8888776533 3678999999999999999999999999554 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
++.....++|..+||.++|++.+. .|+..+.+.+...+++
T Consensus 127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 4777776665544433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=208.25 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=134.2
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
....+++.+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||++++++.++..++.++++++.+
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------- 82 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS----------- 82 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh-----------
Confidence 3444577889999999999999999999999999999999997 9999999999999999999998755
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHH-HHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIAL-TLLVW 181 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~-~~~~~ 181 (575)
.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++.+.+.++|..++| .+++.
T Consensus 83 -----------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~ 142 (379)
T TIGR00881 83 -----------------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE---RGTWVSFWNCSHNVGGGLLPPLVLFG 142 (379)
T ss_pred -----------------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh---heeeEeehhccchhHHHHHHHHHHHH
Confidence 6778999999999999999999999999999554 99999999999999999999 57777
Q ss_pred HhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 182 VQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 182 l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+.+..+||+.|++.++..++..+...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 143 IAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 778889999998877665554444433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=203.33 Aligned_cols=170 Identities=9% Similarity=0.046 Sum_probs=140.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|..+......++.....+.....+|. +.+++|+|..+.+++.+.+.++..++++++|+++||+ |||+++..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~i 84 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34455555556666665556555665 5678999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+++++++ ...+++.|+++|++.|...+...+++.|++|+++ |++..
T Consensus 85 ~~~l~~~~~~----------------------------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~ 133 (394)
T PRK03699 85 AVAGLMFSHS----------------------------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---RGSRL 133 (394)
T ss_pred HHHHHHHcch----------------------------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch---HHHHH
Confidence 9999888644 6678899999999999989999999999998544 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcccchhHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQ-THSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~-~~~g~~~~f~~~~~~~~i~~i 204 (575)
+..+...++|..++|.+.+++. +..|||+.|.+.++..++..+
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~ 177 (394)
T PRK03699 134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 9888888999999999988875 457999999987765554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=200.88 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=128.9
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 008177 29 VFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDG 108 (575)
Q Consensus 29 l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (575)
+++++|.++.+.+++.+.+.++..++++++|+++||+ |||++++.+.++..++..+++++.+
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~----------------- 93 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVES----------------- 93 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhcC-----------------
Confidence 5679999999999999999999999999999999997 9999999999999999988888654
Q ss_pred CCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 109 TQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
.+.+++.|+++|++.+...+...+++.|++|+++ +.+.++......++|..++|.+++++.++.||
T Consensus 94 -----------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~ 159 (401)
T PRK11043 94 -----------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK---ANRVFATIMPLVALSPALAPLLGAWLLNHFGW 159 (401)
T ss_pred -----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 6678899999999988888888899999999544 88888888888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 008177 189 DIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 189 ~~~f~~~~~~~~i~~i~~~ 207 (575)
|+.|++.++..++..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 160 QAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999987766555544433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=199.97 Aligned_cols=169 Identities=13% Similarity=0.044 Sum_probs=140.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
||++......+++..++.+...+++++++ +++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+..+..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLLWC 89 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence 57778888888888888888888899888 57999999999999999999999999999999997 99999999999998
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..++..... . ..++..+++.|++.|+|.+...+...+.+.+.+|+++ |+++
T Consensus 90 ~~~~~~~~~~~-~-----------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---~g~~ 142 (402)
T TIGR00897 90 VGHAAFIVFGL-G-----------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---LSSA 142 (402)
T ss_pred HHHHHHHHHhc-c-----------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH---HHHH
Confidence 88776543110 0 0125667889999999988887888888899999544 9999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHH
Q 008177 161 FNVAYFAFCMGQ-LIALTLLVWVQTHSGMDIGFGVSAAA 198 (575)
Q Consensus 161 ~~~~~~~~~lg~-~~~~~~~~~l~~~~g~~~~f~~~~~~ 198 (575)
.++++.+.++|. .++|.+++++.+..||+..++.....
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 999999999996 58999999998888977666655443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=211.79 Aligned_cols=419 Identities=11% Similarity=0.037 Sum_probs=247.4
Q ss_pred hhhhHHHHHHhhhcc-----CCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008177 19 AAVGNNLITYVFNEM-----HFPL--SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAH 91 (575)
Q Consensus 19 ~~~~~~~~~yl~~~~-----~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~ 91 (575)
.++.+....++++.. ..+. .+.+|+.+.+.++..+++++.|+++|++ |||++++++.+++.+|.++++++.+
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~ 141 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS 141 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355555555555422 1222 3458999999999999999999999997 9999999999999999999999866
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHH
Q 008177 92 LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMG 171 (575)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 171 (575)
+..++++|+++|+|.|+.....+.+++|..|++ .|+...+.++.+.++|
T Consensus 142 ----------------------------~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~---~RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 142 ----------------------------WYQLIVGRILTGLGVGGASVLAPVYISEIAPAH---IRGTLVSLYQLFITIG 190 (513)
T ss_pred ----------------------------HHHHHHHHHHhccchhhhhhcchhhHhhcCChh---hhHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999954 4999999999999999
Q ss_pred HHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccc
Q 008177 172 QLIALTLLVWVQTH-SGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHG 250 (575)
Q Consensus 172 ~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (575)
..++..++....+. ++||..+++..+..++..+.+++ . ||+++++.+
T Consensus 191 i~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-~-------------------------------pesp~~L~~ 238 (513)
T KOG0254|consen 191 ILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLF-L-------------------------------PESPRWLIE 238 (513)
T ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHh-C-------------------------------CCChHHHHH
Confidence 99996664444332 48999888877766555555333 2 233333333
Q ss_pred cccccchhhhhhcCCCCcccCcccccchhhhhhhhcc-cCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 008177 251 SQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQ-DGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQL 329 (575)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 329 (575)
.++.+++++.+.+.......+...+...+........ .......|..+..+ ...++...... -..++|.
T Consensus 239 ~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~i~~~--------l~~fqq~ 308 (513)
T KOG0254|consen 239 KGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSP--KVRKRLIIGLL--------LQLFQQL 308 (513)
T ss_pred cCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCc--chHHHHHHHHH--------HHHHHHH
Confidence 3333333333332222121111111111110000000 00000011111110 11122211111 1122222
Q ss_pred cc--eeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHH
Q 008177 330 QT--FSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVA 407 (575)
Q Consensus 330 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~ 407 (575)
.. ...++...+-... |...+......+..+..++...+...+.| |.+|| ..+..|...+.+++++
T Consensus 309 tG~~~~~~Y~~~if~~~--g~~~~~~~~~~~~~~v~~~~t~~~~~lvd----~~gRr-------~lll~s~~~m~~~~~~ 375 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKSA--GLKSDTFLASIILGVVNFLGTLVATYLVD----RFGRR-------KLLLFGAAGMSICLVI 375 (513)
T ss_pred hCCceEEeehHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHHH----HhccH-------HHHHHhHHHHHHHHHH
Confidence 21 1112212222221 33333233333334444444444445554 44444 3377788888888877
Q ss_pred HHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008177 408 AALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLV 487 (575)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i 487 (575)
++........... ......+..+....++.........|..+.+..|.+|.+.|+++.++....+++.+++........
T Consensus 376 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~ 454 (513)
T KOG0254|consen 376 LAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI 454 (513)
T ss_pred HHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766432111000 111222222333344444555555677788999999999999999999999999988887776655
Q ss_pred HhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHH-HHHHhhccccccCCCC
Q 008177 488 NKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFF-NYLFWSRWYSYNPSLS 544 (575)
Q Consensus 488 ~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~ 544 (575)
....+ ....|+.+++.+.+... +++++.++++.++.++
T Consensus 455 ~~~~~-------------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~slee 493 (513)
T KOG0254|consen 455 TEALG-------------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEE 493 (513)
T ss_pred HHhcc-------------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHH
Confidence 43211 11346677777777766 6777788887766653
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=199.52 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHH-HHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIG-TVFLLSLFGGFLSDSYLGSFWTML-IFGFVEL 80 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~-~~~~~~~ 80 (575)
..+..+...++.+++.....+.++.|+.+++|.|++++|++.+.+.+ +..++++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999877655 55566655666 9997 9998754 5555556
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+.+++++ .+.+++.+.+.+...+...|...++..|+.+++++ ..+..
T Consensus 94 ~~~~~~~~~~~----------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (393)
T PRK15011 94 LACTLFAWNRN----------------------------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR-EAVMF 144 (393)
T ss_pred HHHHHHHHhhH----------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc-hHHHH
Confidence 77777777644 44444444444333446678888888887664331 12445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.++.+.+.++|.++||.+++++.++.|||..|++.++..++..+....
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 578888999999999999999999999999999887765555444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=210.70 Aligned_cols=405 Identities=10% Similarity=0.022 Sum_probs=232.7
Q ss_pred hccC--CChhhHH----HHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 008177 31 NEMH--FPLSKSA----NIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLT 104 (575)
Q Consensus 31 ~~~~--~s~~~~~----~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 104 (575)
+.+| .++.+.. .+++++.+|.++++.+.|+++||+ |||+.+++..++..++.+++.++...+
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~----------- 114 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP----------- 114 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 3455 5554444 457778999999999999999997 999999999999999998888875533
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--H
Q 008177 105 DTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVW--V 182 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~--l 182 (575)
...++.++|++.|+..|......+.++.|+.|. +.||..-.+...+.++|..++..++-. +
T Consensus 115 --------------~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~---~~RG~~g~~~~~~~~~g~ll~~~~~l~~il 177 (485)
T KOG0569|consen 115 --------------SFEMLILGRLIVGLACGLSTGLVPMYLTEISPK---NLRGALGTLLQIGVVIGILLGQVLGLPSLL 177 (485)
T ss_pred --------------hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChh---hhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence 378899999999999999999999999999994 449999999999999999988666432 3
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccc-cccccchhhhh
Q 008177 183 QTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHG-SQNNIATNRVL 261 (575)
Q Consensus 183 ~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 261 (575)
.+.-.|.+.+....+.+++.++...+. ||+|+++.. ++++++|++-+
T Consensus 178 Gt~~~W~~l~~~~~i~~~~~l~~l~~~--------------------------------PESPk~Ll~~k~~~~~A~~sl 225 (485)
T KOG0569|consen 178 GTEDLWPYLLAFPLIPALLQLALLPFL--------------------------------PESPKYLLIKKGDEEEARKAL 225 (485)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcC--------------------------------CCCcchHHHHcCCHHHHHHHH
Confidence 344569998888888777666665543 333333332 22233322222
Q ss_pred hcCCCCcccCcccccchhhhhhhhcccCC--CCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeecc
Q 008177 262 AISPNNRNLLHTEKFRFLDKACIKVQDGA--NESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSA 339 (575)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (575)
.+-.+..+-.. ....+......+... +..++....+.+ ..|+-+... .. ....+|+.+........
T Consensus 226 ~~y~G~~~~~~---~~e~~~~e~~~~~~~~~~~~sl~~~~~~~--~lR~~~~i~----~~---v~~~qq~sGi~ai~~Ys 293 (485)
T KOG0569|consen 226 KFYRGKEDVEA---EIEEMLREIEEEELEKKKQISLRQLLKNP--TLRRPLLIG----IV---VSFAQQFSGINAIFFYS 293 (485)
T ss_pred HHHhCCCcchh---HHHHHHHHHHHhccccccCCcHHHHhcCc--chhHHHHHH----HH---HHHHHHhcCcceeHHHH
Confidence 21111100000 000000000000000 001111000000 111111111 00 11112222211110000
Q ss_pred ccccCCCccccChh-hhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 340 MDNKITNRFQIPPA-SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTA 418 (575)
Q Consensus 340 ~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 418 (575)
.+...+.|+....+ +.+.......++...+...+. +|.+||+. +..+..++.+..+++..........
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~li----d~~gRRpL-------ll~~~~~~~~~~~~~~~~~~l~~~~ 362 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLI----DRLGRRPL-------LLISLSLMAVALLLMSIALFLSNSF 362 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11100003333222 233333333333333333333 56666642 5555555555544444332111100
Q ss_pred hccCCCcccHHHH-HHHHHHHHHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCC
Q 008177 419 ALNSNQILSIFWI-APQFLIFGLS-EMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSS 496 (575)
Q Consensus 419 ~~~~~~~~~~~~l-~i~~~l~g~~-~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 496 (575)
.....+. +...+.+.+. .....|..+-+..|++|++.|+.++++..+.+++.+++.....+.+.+..+.
T Consensus 363 ------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--- 433 (485)
T KOG0569|consen 363 ------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--- 433 (485)
T ss_pred ------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 0111112 2222333332 3333677888999999999999999999999999999999988887553332
Q ss_pred CCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 008177 497 SAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSP 545 (575)
Q Consensus 497 ~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (575)
++|.++.+.+++..+..+...|++|+|+..+.
T Consensus 434 -----------------~~filF~i~~~~~~i~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 434 -----------------YVFILFVIPLAIFLIYLYRYLPETKGRTPYEI 465 (485)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 46888999999998888889999888765543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=206.36 Aligned_cols=393 Identities=10% Similarity=0.033 Sum_probs=224.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+.+|.+....++..++.+...++++.|+++++|+|+.+++++.+.+.++..++++++|+++||+ |||++++++.....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5677888888888888889999999999999999999999999999999999999999999997 999999887766555
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..........+. . .........+.++..+...+...+.+.++.+. ..++++..+
T Consensus 89 ~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~ 143 (420)
T PRK09528 89 LFGPFFIYVFAPL-----------------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VSRRSGFEY 143 (420)
T ss_pred HHHHHHHHHHHHH-----------------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HHhhccccc
Confidence 4432211100000 0 00011222222333333322323333333321 123367788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccC
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQIC 241 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (575)
+..+...++|..++|.+++++.+ .+|+.+|++.++..++.++..+..+++.++++...+.
T Consensus 144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 203 (420)
T PRK09528 144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------- 203 (420)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-------------------
Confidence 88888899999999999999876 5899999988776665555444332221100000000
Q ss_pred CCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHH-HHHH
Q 008177 242 PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIF-ACTI 320 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 320 (575)
++.+ .++..+.+.... ...+.+....... ....
T Consensus 204 ~~~~---------------------------~~~~~~~~~~~~-------------------l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 204 LGAN---------------------------ASAVSLKDALAL-------------------LKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred hhcc---------------------------cccccHHHHHHH-------------------ccCCCeEeehHHHHHHHH
Confidence 0000 000000000000 0001111111111 1111
Q ss_pred HHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHH
Q 008177 321 IFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFV 400 (575)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~ 400 (575)
.+.....+.+.+...... +...+ ....+....+..+...++.++.+++. +|.++|+ .+..+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~~~-------~~~~~~~l 301 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFA--TPEQG---TRVFGYLNSFQVFLEALIMFFAPFII----NRIGAKN-------ALLLAGTI 301 (420)
T ss_pred HHHHHHHHHHHHHHHHHh--ccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCcch-------hhHHHHHH
Confidence 111222222222221100 11110 00122333444444445555665555 5544432 25666666
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHHhHHHHH
Q 008177 401 ATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM-TYCSYSFGFYL 479 (575)
Q Consensus 401 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~l 479 (575)
.+++...++... +.++++...++.+++.....+....++.+.+|++.|++..++ +++...+|..+
T Consensus 302 ~~~~~~l~~~~~--------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i 367 (420)
T PRK09528 302 MAVRIIGSGFAT--------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF 367 (420)
T ss_pred HHHHHHHHHhcc--------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH
Confidence 666666555432 344555566777777777777778899999999999988766 67778899999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008177 480 SSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535 (575)
Q Consensus 480 g~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 535 (575)
++.+.|.+.+.. ++...|.+.+++.++..++.++..+
T Consensus 368 g~~~~G~l~~~~-------------------G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 368 LSTLAGNLYDSI-------------------GFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHHHHhh-------------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999886532 2234677777776666555554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=198.18 Aligned_cols=155 Identities=10% Similarity=0.083 Sum_probs=133.9
Q ss_pred hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008177 21 VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPC 100 (575)
Q Consensus 21 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (575)
..+.+|. +.+++|.+..+.++.++.+.+++.++++++|+++||+ |||++++.+.+++.++.++++++++
T Consensus 35 ~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~--------- 103 (413)
T PRK15403 35 IQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTTS--------- 103 (413)
T ss_pred hccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcCC---------
Confidence 3334443 5678999999999999999999999999999999997 9999999999999999999998755
Q ss_pred CCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008177 101 NMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLV 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 180 (575)
...++++|+++|++.+...+....++.|.+|+++ |++.+++.....++|..+||.+++
T Consensus 104 -------------------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~lg~ 161 (413)
T PRK15403 104 -------------------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK---GIKLMAIITSIVLVAPIIGPLSGA 161 (413)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999988767777788999999554 899999999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 181 WVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 181 ~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+.++.|||+.|++.++..+++.+...+
T Consensus 162 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 162 ALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999988776666554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=196.56 Aligned_cols=365 Identities=10% Similarity=-0.014 Sum_probs=225.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH----HHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTM----LIFGF 77 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~----~~~~~ 77 (575)
+..+.+....++...++-...+++|.|++ ++|+|..+++++.+.+.+...++++++|.++||+ ||+... .++..
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 81 (382)
T TIGR00902 4 QPFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASA 81 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH
Confidence 44455666666777777777888999985 7899999999999999999999999999999997 985433 22222
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 78 VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
+..+ ..+..+++ .+.+++.|.+++.+.+...|...++..|. .++|
T Consensus 82 l~~~--~~~~~~~~----------------------------~~~l~~~~~l~~~~~~~~~p~~~al~~~~-----~~~~ 126 (382)
T TIGR00902 82 IFAA--AFSAGAHN----------------------------AWLLFIAIGLFALFFSAGMPIGDALANTW-----QKQF 126 (382)
T ss_pred HHHH--HHHHhhhh----------------------------HHHHHHHHHHHHHHHccchhHHHHHHHHH-----HHHc
Confidence 2222 12223332 67788889999999888888888876553 2337
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhh
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (575)
++.++......++|.+++|.+++++.+++|||..|++......+.++ .....++. +++++. ++
T Consensus 127 ~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~------------ 189 (382)
T TIGR00902 127 GLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAI-PE------------ 189 (382)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccc-cc------------
Confidence 88999999999999999999999999999999998876554332222 22222211 111000 00
Q ss_pred cccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHH
Q 008177 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFA 317 (575)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (575)
++ . . +..++ .+..++++.+......++
T Consensus 190 -----~~-------~---~-----------------~~~~~---------------------~~~l~~~~~~~~l~~~~l 216 (382)
T TIGR00902 190 -----DE-------S---Q-----------------GDSAF---------------------IALLKNPMNLRFLAAVCL 216 (382)
T ss_pred -----cc-------c---c-----------------cchhH---------------------HHHHcChHHHHHHHHHHH
Confidence 00 0 0 00000 000011111111111122
Q ss_pred HHHHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHH
Q 008177 318 CTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGV 396 (575)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~ 396 (575)
........+...+.+. . + . |... ..+.......+..++.. .+.+++.+|+ ++.+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~l-~-----~--~--g~s~~~~g~l~~~~~~~~i~~~----~~~~~l~~r~-------g~~~~l~~ 275 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYW-Q-----A--A--GISASATGLLWGIGVLAEIIIF----AFSNKLFQNC-------SARDLLLI 275 (382)
T ss_pred HHHHHHHHHHHHHHHH-H-----H--C--CCCHhHHHHHHHHHHHHHHHHH----HHhHHHHhhC-------CHHHHHHH
Confidence 2222222222221111 1 1 1 1111 11222222233333333 3333444554 44556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHhH
Q 008177 397 GLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTY-CSYSF 475 (575)
Q Consensus 397 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~l 475 (575)
+.++..+.+..+...+ +.+.+++..++.++..+...+....++.+. |++.|++++++++ +...+
T Consensus 276 ~~~~~~~~~~~~~~~~--------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~ 340 (382)
T TIGR00902 276 SAIACVGRWAIIGAIE--------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGG 340 (382)
T ss_pred HHHHHHHHHHHHHhHh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHH
Confidence 8888888887776553 455666678999999999999999999988 9999999999987 45679
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHH
Q 008177 476 GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFN 529 (575)
Q Consensus 476 g~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~ 529 (575)
|..+++.+.|.+.+..+ . ..|++.+++.++++++
T Consensus 341 g~~~g~~~~G~l~~~~g-------------------~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 341 LIAIFTAFAGFIYPTLG-------------------A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhcc-------------------H-HHHHHHHHHHHHHHHH
Confidence 99999999998865321 1 3567777777665444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=198.71 Aligned_cols=163 Identities=14% Similarity=0.026 Sum_probs=121.5
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHH-HHHHH-----HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 10 LQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIV-TNFIG-----TVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~-~~~~~-----~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
..+++.+.... .....+.+.++++.++.+.+.+. +.... +..+++++.|+++||+ |||+.++.+.+++.++.
T Consensus 23 ~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ 100 (434)
T PRK15075 23 GNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIMASGT 100 (434)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHHHHHH
Confidence 33344333333 45556678889999888766543 22222 2246789999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++++++++...+ .......+++.|+++|++.|...+....+++|++|+++ |+++.++
T Consensus 101 ~l~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---rg~~~~~ 157 (434)
T PRK15075 101 LLIAFVPGYATI--------------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR---KGFYTSW 157 (434)
T ss_pred HHHHhCCcHHHH--------------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc---chHHHHH
Confidence 999987552110 00001246889999999999999999999999999655 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--------hcccchhHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQ--------THSGMDIGFGVSAA 197 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~--------~~~g~~~~f~~~~~ 197 (575)
.....++|..+++.+++.+. +.+|||++|++..+
T Consensus 158 ~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 158 QSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88888888888888877653 46899999987544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-20 Score=193.96 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~ 85 (575)
..+...+....+.+...+.+|.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||+.++.+.++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence 34444455556666666666654 568999999999999999999999999999999997 9999999999999999998
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 86 LSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
+..+++ ...+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+
T Consensus 85 ~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~ 133 (392)
T PRK10473 85 CSLAET----------------------------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR---RAKVLSLLN 133 (392)
T ss_pred HHHhCc----------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH---HHHHHHHHH
Confidence 887654 5668889999999999989999999999999554 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
...++|..++|.+++.+.+..||++.|++.++..++..+....
T Consensus 134 ~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 134 GITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999887765555544433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-20 Score=194.75 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=141.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|..+......++..+......+.+|.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 85 (394)
T PRK11652 8 NLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFIL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHH
Confidence 344555555556666666566666654 578999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.+++.++++ .+.+++.|++.|++.+...+....+..|.+++++ ++++.
T Consensus 86 ~~~~~~~~~~----------------------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 134 (394)
T PRK11652 86 GTLVALFAHS----------------------------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ---LRHAN 134 (394)
T ss_pred HHHHHHHHcc----------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH---HHHHH
Confidence 9988887654 6778899999999998888888888899888544 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
++...+..+|..++|.+++++.++.|||+.|++.++..++..+
T Consensus 135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999987765544433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=212.41 Aligned_cols=176 Identities=18% Similarity=0.137 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+.+++.++..++..=|.+-..+ .-+++.+|++++..|++.+.+.+.+.+.+|+.|+++||| .||+++.++..++.++.
T Consensus 35 l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 35 LVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHHHHH
Confidence 5566677777777777665544 356788999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++++++.+ ++.+.+.|.+.|+|.+.+.|.++++++|.+|+++ |++.+++
T Consensus 113 ~~~~fs~~----------------------------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---Rs~~~~i 161 (493)
T KOG1330|consen 113 FASGFSNH----------------------------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---RSRVLGI 161 (493)
T ss_pred HHHHHHHH----------------------------HHHHHHHHHHhccchhhhcccchhHhhhcCcchh---hhHHHHH
Confidence 99999865 8889999999999999999999999999999655 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcce
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
+|++.++|..+|.++++.+..+.+ |||.|+..+++.++..++.++..++
T Consensus 162 fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 162 FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 999999999999999999988776 9999999999887777766665543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=201.42 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=128.3
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
....+++++ +|+++.+.+++.+.+.++..+++++.|+++||+ |||+.++.+.++..++..+++..++.
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA---------- 114 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc----------
Confidence 334456665 599999999999999999999999999999997 99999999999999988887764321
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
..+...+.+.|++.|++.|...+.....+.|++|+++ |++++++++.+.++|..+++.+.+.+
T Consensus 115 --------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~---rg~~~~~~~~~~~~g~~~~~~l~~~~ 177 (438)
T TIGR00712 115 --------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE---RGTIVSIWNCAHNIGGGIPPLLVLLG 177 (438)
T ss_pred --------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc---chhHHHHHHHHHHhHhHHHHHHHHHH
Confidence 1225567788999999999998989999999999655 99999999999999999998887654
Q ss_pred -hhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 183 -QTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 183 -~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
..+.+||..|++.++..++..+...+
T Consensus 178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 178 MAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44579999999987766555444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=205.80 Aligned_cols=377 Identities=16% Similarity=0.214 Sum_probs=244.4
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 008177 31 NEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQ 110 (575)
Q Consensus 31 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (575)
.++++|..|.+++.+++..|+.++++++|+++||+ |-|+++..+.++.++++++.+.+.+..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~----------------- 127 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG----------------- 127 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 36899999999999999999999999999999997 999999999999999999999987622
Q ss_pred ccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccch
Q 008177 111 NCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH-SGMD 189 (575)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~g~~ 189 (575)
...+++.|+++|++.|...|++..+.+.|.|+.| |++..++.+.+..+|.+++..++|++.++ .||+
T Consensus 128 ---------~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~ 195 (466)
T KOG2532|consen 128 ---------FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWP 195 (466)
T ss_pred ---------chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCc
Confidence 3467999999999999999999999999999666 99999999999999999999999999998 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcc
Q 008177 190 IGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRN 269 (575)
Q Consensus 190 ~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (575)
.+|++.+...++..++++......+.+++.-+ .+..+.+ +.++.++ .
T Consensus 196 sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is--~~El~~I-------------------~~~k~~~------------~ 242 (466)
T KOG2532|consen 196 SIFYVFGIVGLIWFILWFLFYSDSPSKHPNIS--EKELKYI-------------------EKGKSEA------------H 242 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC--HHHHHHH-------------------Hhccccc------------c
Confidence 99999998877776666554432211111100 0000000 0000000 0
Q ss_pred cCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccc
Q 008177 270 LLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQ 349 (575)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 349 (575)
.... ...||+... .+...+-.....+.....++...++.++++- .-+ ++.
T Consensus 243 ~~~~-----------------~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~-------~VL--~f~ 292 (466)
T KOG2532|consen 243 VKKK-----------------PPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLK-------EVL--GFD 292 (466)
T ss_pred cCCC-----------------CCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHh--CCC
Confidence 0000 011232110 0111111112222333334444444444332 111 233
Q ss_pred c-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 008177 350 I-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRV--GVGLFVATFSMVAAALIEKKRRTAALNSNQIL 426 (575)
Q Consensus 350 ~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~--~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 426 (575)
+ .++.+++++.+...+...+.+.+.|++.+| .-. ....+++ .++....++.++.++... ..
T Consensus 293 v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~------------~~ 356 (466)
T KOG2532|consen 293 VRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS------------DE 356 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC------------CC
Confidence 3 356778888888888888888888777555 111 1122233 555555656666555542 11
Q ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCC
Q 008177 427 SIFWIAPQFLIFGLSEM-FTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDN 505 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~-~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~ 505 (575)
.. ++.+..+..+.+.. +..++.+.-..+.+ +++-+..+|+.++...+.+.++|.+++.+.. ..
T Consensus 357 ~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~------------- 420 (466)
T KOG2532|consen 357 HR-LLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN------------- 420 (466)
T ss_pred cc-hHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC-------------
Confidence 11 22222222333322 22233333233334 5778999999999999999999999988753 10
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 506 DLNKDRLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 506 ~l~~~~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
+...+..+|++.+++.+++.+++.++.
T Consensus 421 --t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 421 --TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred --CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 123456789999998888887776664
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=192.58 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFN-EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+.+....+...+..+...+.+...+.+ ++|+|++|.+++.+.+.+++.+++++.|++.||+ |.|+++.++.++..+..
T Consensus 36 l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 36 LWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 334444455666666666666667655 8999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++.+++.+.+ ..++..+++.|++.|++ |...+.....+++++|+++ |++++++
T Consensus 115 ~~~~~a~~~~-----------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~---rG~A~Gi 167 (462)
T PRK15034 115 VWLGIAVQNP-----------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK---QGSALGI 167 (462)
T ss_pred HHHHHHHccc-----------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH---hHHHHHH
Confidence 9988752100 12378899999999998 7788899999999999554 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----h-------------cccchhHHHHHHHHHHHHHHHHHHh
Q 008177 164 AYFAFCMGQLIALTLLVWVQ-----T-------------HSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
+....|+|..+++.+...+. . ..+|+..+++..+..++..+..++.
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 97667777776655554322 2 2346666666666555555444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=190.55 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=139.5
Q ss_pred HhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008177 16 TAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQL 95 (575)
Q Consensus 16 ~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 95 (575)
++...+.+.+|.+.+ ++|+|+.+.+++.+.+.++..++++++|+++||+ |||+++..+.++..++..++.++++
T Consensus 5 ~~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~---- 78 (377)
T PRK11102 5 LAIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQT---- 78 (377)
T ss_pred hHHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHcc----
Confidence 344556677887765 7999999999999999999999999999999997 9999999999999999999988654
Q ss_pred CCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q 008177 96 RPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIA 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 175 (575)
.+.+++.|+++|++.+...+...+++.|++|+++ |++.+++.+...++|..++
T Consensus 79 ------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~ 131 (377)
T PRK11102 79 ------------------------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE---FSRMMSFVTLVMTIAPLLA 131 (377)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999554 9999999999999999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 176 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
|.+++++.+..+|++.|++.+...++..+...+
T Consensus 132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 132 PIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999899999998877766555444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-20 Score=193.93 Aligned_cols=179 Identities=10% Similarity=-0.020 Sum_probs=135.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.+|......++...+...+.++++.|+++++|.++.+.+++.+.+.++..++++++|+++||+ |||+.++.+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 5677888888888888999999999999999999999999999999999999999999999997 999999987776655
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..........+. ........+++.+++.|++.+...+....+..|..+ +++..+
T Consensus 81 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~ 135 (396)
T TIGR00882 81 LFAPFFIYVFGPL--------------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-----NSNFEY 135 (396)
T ss_pred HHHHHHHHHhhhH--------------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-----hccccc
Confidence 4433221100000 000113345667888888888888888777766422 134567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
+......++|.++||.+++.+.+ .+|+.+|++.+...++..+..+
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 77778889999999999998865 6999999988776655544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=194.60 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=136.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|+++......+......+...+.+|.++++++|+|+.+.+++.+.+.++..++++++|+++||+ |||+.++++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4567777777777777778888888789999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhh-ccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 82 GFILLSVQA-HLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
+.+++++++ + ++.+++.|+++|++.+. .+...++++|++|+++ |+++
T Consensus 80 ~~~~~~~~~~~----------------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~---r~~~ 127 (366)
T TIGR00886 80 PCLWAGLAVQS----------------------------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI---QGTA 127 (366)
T ss_pred HHHHHHHHhhh----------------------------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh---hhHH
Confidence 999998875 4 67788999999998665 4567889999999555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----------cccchhHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQT----------HSGMDIGFGV 194 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~----------~~g~~~~f~~ 194 (575)
.+++....++|..+++.+++.+.. +.+||+.|++
T Consensus 128 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 128 LGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 999888888888888887766654 3489999843
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-19 Score=187.43 Aligned_cols=389 Identities=9% Similarity=0.036 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc-hHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGS-FWTMLIFGFVELSGFI 84 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~~~~i~~~ 84 (575)
-+.+..|+...++-.+.++++.|+++++|++..++|++.+.+.++..++++++|+++||+ || |+++.++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 345566667777777789999999999999999999999999999999999999999996 76 7788888888878887
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhc--------ccCCccchhh
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGA--------DQFKKQESKK 156 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~--------~~~~~~~~~~ 156 (575)
+..+.++ .+.+.+.|++.+++.+...+...++.. |......
T Consensus 85 ~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--- 133 (418)
T TIGR00889 85 FAAQVTT----------------------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--- 133 (418)
T ss_pred HHHHhcC----------------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC---
Confidence 7777644 555778888888877766665555432 2122111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhh
Q 008177 157 LSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITK 236 (575)
Q Consensus 157 r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (575)
|.+.++ .+|.++||.+++.+.....|. +|++.++..++..+..+ ..|+.++.+ +++. .+..+.
T Consensus 134 ~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~-~~~~-~~~~~~------- 196 (418)
T TIGR00889 134 PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAK-STAK-MSIKVM------- 196 (418)
T ss_pred Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCc-cccc-cCHHHH-------
Confidence 444444 478899999988884433344 46665555444443322 222211000 0000 000000
Q ss_pred hcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHH
Q 008177 237 RKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIF 316 (575)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (575)
...++. ...++.+........+
T Consensus 197 -------------------------------------~~~~~~---------------------~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 197 -------------------------------------LGLDAF---------------------ILFKNKRMAIFFFFSM 218 (418)
T ss_pred -------------------------------------hhhhHH---------------------HHhcCCCeeeHHHHHH
Confidence 000000 0000001000011111
Q ss_pred HHHHHHHHHHhhccceeeeeeccccccCCCccc-cChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHH
Q 008177 317 ACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQ-IPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVG 395 (575)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~ 395 (575)
+............+.+.... . .+.....++. ...+....+..+..++.....+++. +|+++| +.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~----dr~g~r-------~~l~ 285 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHEF-G-RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFL----KRFGIK-------KVML 285 (418)
T ss_pred HHHhHHHHHHHhHHHHHHHh-c-ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHhCcH-------HHHH
Confidence 11111111111111111000 0 0000000000 0122333344444444455555444 554333 4466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHh
Q 008177 396 VGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTY-CSYS 474 (575)
Q Consensus 396 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ 474 (575)
.+.++.++++.++.... ......+.+++..++.+++.+...+....++.|.+|++.|++++|+.+ ..+.
T Consensus 286 ~~~~~~~v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 286 LSLVAWALRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred HHHHHHHHHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 77777766665554321 000122334456678888888888888899999999999999999997 5678
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 475 FGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWY 537 (575)
Q Consensus 475 lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 537 (575)
+|..+++.+.|.+.+..+.. +..++...|.+.++..+++.+.++++.++.
T Consensus 356 lg~~iGp~l~G~l~~~~g~~-------------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAY-------------GTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred hHHHHHHHHHHHHHHHhccc-------------cCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999887644320 001234567777777777777777776644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-18 Score=187.56 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=219.9
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchH-HHHHHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY---LGSFW-TMLIFGFVELSGFILLS 87 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~~~~i~~~~~~ 87 (575)
+..++....+.++++.|+++++|+++.++|++.+...+...+..|+.|+++||. +|||| .++.+.....++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 345566666778899999999999999999999999999999999999999983 38754 57777788888888777
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
..++.+. ......+.+.+++.+++.+...+...++..|..++ +++|++..++.+..
T Consensus 89 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~R~~~~~~~~~~ 144 (437)
T TIGR00792 89 TTPDFSA----------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PRERESLSTFRRFG 144 (437)
T ss_pred hCCCCCc----------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HHHHHHHHHHHHHH
Confidence 6533111 12345567778888888888888888999998753 34489999998888
Q ss_pred HHHHHHHHHHHHHHHh-------hcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhccc
Q 008177 168 FCMGQLIALTLLVWVQ-------THSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~-------~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (575)
.++|..++..+.+.+. +..+|++.+.+.++..++..+...+..++.++.+++++.
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~------------------ 206 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE------------------ 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc------------------
Confidence 8888888777665554 246899998887776655554444333221100000000
Q ss_pred CCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHH-HHHHH
Q 008177 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVP-IFACT 319 (575)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 319 (575)
+ +.+..+.. +.....|.+..... .++..
T Consensus 207 ---~------------------------------~~~~~~~~------------------~~l~~~~~~~~~~~~~~~~~ 235 (437)
T TIGR00792 207 ---K------------------------------KLSLKQIF------------------KALFKNDQLLILCLAYLFYN 235 (437)
T ss_pred ---c------------------------------CCCHHHHH------------------HHHhCCHHHHHHHHHHHHHH
Confidence 0 00000000 00001111111111 11111
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLF 399 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~ 399 (575)
.... .......++..+.. . . ....+.+..+..+..+++.++.+++. +|+++| +.+..+.+
T Consensus 236 ~~~~-~~~~~~~~~~~~~~--~-~-----~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~g~~-------~~~~~~~~ 295 (437)
T TIGR00792 236 LAFN-IKNGVQVYYFTYVL--G-D-----PELFSYMGSIAIVAGLIGVLLFPRLV----KKFGRK-------ILFAGGIL 295 (437)
T ss_pred HHHH-HHcchhheeEeeec--C-C-----hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCcH-------HHHHHHHH
Confidence 1111 11111122222111 1 0 11122333444556666666666555 454333 33566666
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHH
Q 008177 400 VATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSL-------EGMQSFLTAMTYCS 472 (575)
Q Consensus 400 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~ 472 (575)
+..++++.+.... .+.+...+..++.+++.+...+..++++.|..| ++.+|.+.|+.++.
T Consensus 296 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 296 LMVLGYLIFFFAG-------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred HHHHHHHHHHHcc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHH
Confidence 6666665544321 123344555667788888888888888888775 56789999999999
Q ss_pred HhHHHHHHHHHHHHHHhhccc
Q 008177 473 YSFGFYLSSLLVSLVNKITSR 493 (575)
Q Consensus 473 ~~lg~~lg~~l~~~i~~~~~~ 493 (575)
..+|..+++.+.+.+.+..+.
T Consensus 363 ~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 363 RKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998876554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-22 Score=207.18 Aligned_cols=366 Identities=30% Similarity=0.499 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhccc
Q 008177 69 FWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQ 148 (575)
Q Consensus 69 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 148 (575)
.|+++++.+++.+|.+++.++...+.. .++.+...++++..++++|.|+.+|++.++++|+
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-------------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 378999999999999998887653221 2334567799999999999999999999999999
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeec-CCCCCchhh-H
Q 008177 149 FKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNK-SPRGSIFTP-I 226 (575)
Q Consensus 149 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~-~~~~~~~~~-~ 226 (575)
++++++++|.++|+++|++.|+|+.+++.+.+++.+++||.+.|+++.+.++++++.+...++++++. ++.+.+..+ .
T Consensus 62 ~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~ 141 (372)
T PF00854_consen 62 YDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI 141 (372)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence 99886777999999999999999999999999999999999999999999999999999888888776 556666555 3
Q ss_pred HHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCc-ccchhhHHH
Q 008177 227 AQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWK-LCTVTQVEQ 305 (575)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 305 (575)
..+.....+++....|....+..+...... ...... ............. ....|. .+..++++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 206 (372)
T PF00854_consen 142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYS----------ERSIFG--IIVFIRAAVIFFP---EIFFWALFCQVQRVEE 206 (372)
T ss_dssp HHHHHHHHHHHCCCH-HHHHHHHHHHHHHC----------CCCCCC--CCCHHHHHHHHCC---CHHHHTTTSSTTTHHH
T ss_pred HHHHHHHHHHhhcccccchHHHHHhhhhhh----------hhhhhh--hhhhccchhhhhh---hhhhcccCCccceeee
Confidence 334444444444333322222111100000 000000 0000000000000 000011 122344555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCc-cccChhhhccchhHHHHHHHHhhhHHHhhcccccccC
Q 008177 306 VKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNR-FQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKK 384 (575)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r 384 (575)
.+.+.+..+.+...+.++....+...+...+...++.... + +.+|+++++.++.+..++..|+.+++..|+.+ .
T Consensus 207 ~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~--- 281 (372)
T PF00854_consen 207 LKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-R--- 281 (372)
T ss_dssp CCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T---
T ss_pred eeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-h---
Confidence 6666677777777777777777777777777677766665 6 78999999999999999999999999988877 2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 008177 385 DSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSF 464 (575)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~ 464 (575)
+...+...++.+|+++..+++++....+.++.....++ +..+.+|..+.+++..+++.+..+...+..+|.+|++..+.
T Consensus 282 ~~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~ 360 (372)
T PF00854_consen 282 GIQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-GKVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSS 360 (372)
T ss_dssp ------HHHHHHH-HHHHHHHHTTTHHHH---HH-----TT--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSS
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHH
Confidence 22347889999999999999988887776444333332 33334677799999999999999988998888888888888
Q ss_pred HHHHHHHHHh
Q 008177 465 LTAMTYCSYS 474 (575)
Q Consensus 465 ~~g~~~~~~~ 474 (575)
.+|+.+..+.
T Consensus 361 m~~~~~~~~~ 370 (372)
T PF00854_consen 361 MMGIWFALSA 370 (372)
T ss_dssp STHHHHHHH-
T ss_pred HHHHHHHHhc
Confidence 8887766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=188.89 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=141.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-----cchHH-HHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYL-----GSFWT-MLI 74 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Grr~~-~~~ 74 (575)
||+.+.++.+.+......+...+.+|.+++ +.|.|.++++.+ +...... +..+++|+++|| + ||||. ++.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 567778888888888888888888999987 569999999987 3333333 688999999999 5 99986 557
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccch
Q 008177 75 FGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQES 154 (575)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 154 (575)
+.+...++..++++... ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 87 ~~i~~~~~~~~~a~~~~-------------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLEP-------------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE- 140 (491)
T ss_pred HHHHHHHHHHHHHHcCC-------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence 77777777777777532 1336678888999999999999999999999999555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHHHHHHHHHHHH
Q 008177 155 KKLSTYFNVAYFAFCMGQLIALTLLVWVQT-HSGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 155 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
|+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 47999999998876665544443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=212.59 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=127.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChh--hHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLS--KSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVE 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~--~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~ 79 (575)
+.++..+..+++..+...+....+..++..+++.+.. ..+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 4566677777777777766667777777766766543 468899999999999999999999997 9999999998876
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
+++.++..++... .+++.+++.|+++|++.+...+...++++|++|+++ |++
T Consensus 88 ~~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~ 139 (1146)
T PRK08633 88 VGLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN---LSR 139 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc---chh
Confidence 6666655543211 126779999999999999999999999999999655 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTH 185 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~ 185 (575)
++++...+.++|.++|+.+++++.+.
T Consensus 140 ~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 140 ANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998875
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=189.26 Aligned_cols=359 Identities=13% Similarity=0.083 Sum_probs=237.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.+..++..+++.+++......-++-++. ++.-|+...+++..+..+...+..+++|.++||+ .|||+++.+-++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 45666777777777777777777776665 5567899999999999999999999999999997 999999999998877
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
...++++..... ..+.+.+++.-++.|++.+...|+..+++.|..|+++ ..++.
T Consensus 88 ~~~~L~~l~~~~-----------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~---L~~A~ 141 (524)
T PF05977_consen 88 VALLLAVLAFFG-----------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED---LPAAN 141 (524)
T ss_pred HHHHHHHHHHhC-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh---HHHHH
Confidence 766666543211 1336778888899999999999999999999999555 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccC
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQIC 241 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (575)
++.....|+..++||.++|.+....|-.+.|.+.++..++.++.+...+++. +++..+.+...+.+...
T Consensus 142 al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G-------- 210 (524)
T PF05977_consen 142 ALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFSALREG-------- 210 (524)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHH--------
Confidence 9999999999999999999999888989999998877665544443332211 11111100000000000
Q ss_pred CCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHH-HhhHHHHHHHHH
Q 008177 242 PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKI-IMSVVPIFACTI 320 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 320 (575)
... .... +..+. +.+...+.+...
T Consensus 211 ----------------------------------------~ry--------------v~~~-~~l~~~l~~~~~~~l~~~ 235 (524)
T PF05977_consen 211 ----------------------------------------LRY--------------VRSS-PPLRSVLLRSFLFNLFAS 235 (524)
T ss_pred ----------------------------------------HHH--------------Hhcc-hHHHHHHHHHHHHHHhhh
Confidence 000 0000 00111 111111111111
Q ss_pred HHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHH
Q 008177 321 IFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFV 400 (575)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~ 400 (575)
..+. .++ .+.. ..++ +-....+.+.....++.+++..+..+ +.+|. +..+.+..+.++
T Consensus 236 a~~a---LlP-l~a~------~~l~-~~a~~yGll~a~~gvGai~Gal~~~~----l~~~~-------~~~~lv~~~~~~ 293 (524)
T PF05977_consen 236 AVWA---LLP-LFAR------DVLG-GGASGYGLLLAAFGVGAILGALLLPR----LRRRL-------SSRRLVLLASLL 293 (524)
T ss_pred HHHH---hhh-HHHH------HHhC-CcHHHHHHHHHHHHHHHHHHHHHHHH----hhccc-------CcchhhHHHHHH
Confidence 1111 111 1111 1110 00112234445555555555554432 22332 333446667777
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHH
Q 008177 401 ATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLS 480 (575)
Q Consensus 401 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg 480 (575)
.+++++.++... +.+...+..++.|++........++.+.+..|+++||+..+++.+....+..+|
T Consensus 294 ~a~~~~~lal~~--------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lG 359 (524)
T PF05977_consen 294 FALALLLLALSP--------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLG 359 (524)
T ss_pred HHHHHHHHhcch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 777776666552 455566677888999888888889999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 008177 481 SLLVSLVNKI 490 (575)
Q Consensus 481 ~~l~~~i~~~ 490 (575)
..+.|.+.+.
T Consensus 360 sll~G~la~~ 369 (524)
T PF05977_consen 360 SLLWGFLADH 369 (524)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=187.42 Aligned_cols=147 Identities=16% Similarity=0.085 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILL 86 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~ 86 (575)
+..+.+...+........+| .+++++|.|+.+.+++.+.+.+++.+++++.|+++||+ |||+++..+..++.++.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 31 LCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444 55899999999999999999999999999999999997 99999999999999999886
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
..... ..++..++++|+++|+|.|...+..++++.|+.|+++ |....++++.
T Consensus 109 ~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~---~~~~~s~~~~ 160 (438)
T PRK10133 109 WPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRLNLAQT 160 (438)
T ss_pred HHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh---HHHHHHHHHH
Confidence 42211 1227789999999999999999999999999866433 6666888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008177 167 AFCMGQLIALTLLVWVQ 183 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~ 183 (575)
...+|..+|+.+++.+.
T Consensus 161 ~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 161 FNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=182.83 Aligned_cols=157 Identities=10% Similarity=-0.059 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch----HHHHHHHHHHHHHHH
Q 008177 9 GLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSF----WTMLIFGFVELSGFI 84 (575)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr----~~~~~~~~~~~i~~~ 84 (575)
...++..++...+.+.+|.|++ ++|.|..++|++.+.+.++..++++++|.++||+ ||| +.+.+...+. ...
T Consensus 11 ~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~ 86 (382)
T PRK11128 11 LSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVA 86 (382)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHH
Confidence 3455666777888899999995 6899999999999999999999999999999997 984 3332222211 111
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
.+..+ .+.+.+++.|++.|++.+...|...++..++. ++ |++.++..
T Consensus 87 ~~~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~---~~~a~~~~ 133 (382)
T PRK11128 87 FWFGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ---IGLDYGKV 133 (382)
T ss_pred HHHhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh---ccCCcchH
Confidence 12222 22677888999999999999898888877762 22 77888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
....++|..+||.+++++.+++|||..|++.++..++.
T Consensus 134 ~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 134 RLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 88889999999999999999999999998877644433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-19 Score=210.56 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHH---H-HHHhhhccCCCh-hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNN---L-ITYVFNEMHFPL-SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGF 77 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~-~~yl~~~~~~s~-~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 77 (575)
.+..++..+++..+..+..... + ...+.+..+.+. ...++..+.+.+.+.+.++++|+++||+ |||+++.....
T Consensus 12 ~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~ 90 (1140)
T PRK06814 12 RFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKF 90 (1140)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHH
Confidence 3445556666655554332222 2 223333333333 4467888889999999999999999997 99998644222
Q ss_pred --HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchh
Q 008177 78 --VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESK 155 (575)
Q Consensus 78 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 155 (575)
+...+..+.++.. .+++.+++.|+++|++.+...|...+++.|++++++
T Consensus 91 ~~~~~~~~~~~~~~~---------------------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~-- 141 (1140)
T PRK06814 91 AEIGIAALAIYGFHL---------------------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE-- 141 (1140)
T ss_pred HHHHHHHHHHHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc--
Confidence 2222222222221 127789999999999999999999999999999655
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 156 KLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 156 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
|+++.++.+++.++|.++||.++|++.+..+|++.|+..++..+++++
T Consensus 142 -~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~ 189 (1140)
T PRK06814 142 -LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL 189 (1140)
T ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998554444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-18 Score=176.40 Aligned_cols=384 Identities=15% Similarity=0.064 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....+...++.+.+.+.+..++++++|+|+.|.+++++.-.+...+.+++-|.+.||+ |.|+...++.++..+-.+
T Consensus 16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~IP~~ 94 (417)
T COG2223 16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLLIPCL 94 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHHHHHH
Confidence 3444555666777788888888999999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
..+++.+.|+ .+.+++.+++.|++ |+..+...++++++||+++ ++.+.+++
T Consensus 95 ~~~~a~~~~~-------------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~---qG~AlGI~ 145 (417)
T COG2223 95 GLAFAVTYPS-------------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK---QGLALGIA 145 (417)
T ss_pred HHHHHccCCc-------------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh---hhHHHHHh
Confidence 9999876443 46788999999997 5556788899999999555 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccC
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSG---MDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQIC 241 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (575)
. +.|+|..+...++.++....| |+....+..+.+++..+..++.....+..+++.++..+ .+
T Consensus 146 g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-~~------------- 210 (417)
T COG2223 146 G-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-AQ------------- 210 (417)
T ss_pred c-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-hH-------------
Confidence 9 899999999999999998888 99988888887777666666554332221111111000 00
Q ss_pred CCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhH-HHHHHHhhHHHHHHHHH
Q 008177 242 PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQV-EQVKIIMSVVPIFACTI 320 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 320 (575)
.+.+ .+++.+.-.+..+....
T Consensus 211 ----------------------------------------------------------~~~v~~~~~~W~lsllY~~tFG 232 (417)
T COG2223 211 ----------------------------------------------------------LKAVFSNKDTWLLSLLYFATFG 232 (417)
T ss_pred ----------------------------------------------------------HHHHhcCcchHHHHHHHHHHHH
Confidence 0000 01122211221222112
Q ss_pred HHHHHHhhccceeeeeeccccccCCCccc-cChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHH
Q 008177 321 IFNTILAQLQTFSVQQGSAMDNKITNRFQ-IPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLF 399 (575)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~ 399 (575)
.+-....+.+.++..+ + |.. ...+......+....+.-|+.+++.||++ ..+.+.+.+.
T Consensus 233 ~Fvgfs~~l~~~~~~~-------f--g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~G-----------g~rv~~~~f~ 292 (417)
T COG2223 233 GFVGFSAYLPMYLVTQ-------F--GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIG-----------GRRVTLAVFV 292 (417)
T ss_pred HHHHHHHHHHHHHHHh-------c--CCChhhHHHHHHHHHHHHHHHHhccchhhhhcc-----------chhHHHHHHH
Confidence 2222222222222221 1 111 12335556666666666777766664443 2344555566
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHH
Q 008177 400 VATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYL 479 (575)
Q Consensus 400 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l 479 (575)
.+.++......... ... ...+.......++.+++..+..+...+-.+..++|+ +-|...|+....+.+|++.
T Consensus 293 ~~~~~~~~l~~~~~------~~~-~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~ 364 (417)
T COG2223 293 GMALAAALLSLFLT------GFG-HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF 364 (417)
T ss_pred HHHHHHHHHHcccc------ccc-cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence 66666555544310 000 012222333334555566666666666777777765 5688899999999999988
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 480 SSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWY 537 (575)
Q Consensus 480 g~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 537 (575)
-|...+...+.++. +...|+++..+.+++.+..+....++
T Consensus 365 lp~~~g~~~~~tg~------------------~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 365 LPLAFGVSLDLTGS------------------YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hhHHHHHHHHhccc------------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888887654442 34678888999998888887776543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=183.00 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=117.4
Q ss_pred HHHHHhhhccC--CChhhHHHHHHH--HHH---HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008177 24 NLITYVFNEMH--FPLSKSANIVTN--FIG---TVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLR 96 (575)
Q Consensus 24 ~~~~yl~~~~~--~s~~~~~~i~~~--~~~---~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (575)
....++.+++. .++++.+.+.+. +.. +..+++++.|+++||+ |||++++.+.++..++.++++++++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-- 90 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT-- 90 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh--
Confidence 34445555543 455666655543 222 3346889999999997 9999999999999999999998755221
Q ss_pred CCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHH
Q 008177 97 PSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIAL 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 176 (575)
........+++.|+++|++.+...+...+++.|++|+++ |++..++.+.+..+|..+++
T Consensus 91 ------------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~i~~ 149 (394)
T TIGR00883 91 ------------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK---RGFYGSFQQVGAPVGLLLAA 149 (394)
T ss_pred ------------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc---chHHHHHHHHHHHHHHHHHH
Confidence 001112457889999999999999999999999999655 99999999999999999999
Q ss_pred HHHHHHh--------hcccchhHHHHHHHHHHHHH
Q 008177 177 TLLVWVQ--------THSGMDIGFGVSAAAMAVGL 203 (575)
Q Consensus 177 ~~~~~l~--------~~~g~~~~f~~~~~~~~i~~ 203 (575)
.++..+. +.++||+.|++.++..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 150 LTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 8876654 35789999988776555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=181.27 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=121.5
Q ss_pred hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008177 21 VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPC 100 (575)
Q Consensus 21 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (575)
+.+.+| .+.+++|.|.++.+++.+.+.++..+++++.|+++||+ ||||+++++.++..++.+++ .+++
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~~--------- 86 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAPG--------- 86 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhcc---------
Confidence 444444 56779999999999999999999999999999999997 99999999998888887766 4332
Q ss_pred CCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008177 101 NMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLV 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 180 (575)
...+++.|++.|++.+...+..+.++.|.+| ++ |+++.++++...++|..+++.+++
T Consensus 87 -------------------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~g~~i~~~~~~ 143 (355)
T TIGR00896 87 -------------------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR---VGLMTGLYSMALMGGAALAAAATV 143 (355)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999888888888888876 33 899999999999999999999999
Q ss_pred HHhhcc--cchhHHHHHHHHHH
Q 008177 181 WVQTHS--GMDIGFGVSAAAMA 200 (575)
Q Consensus 181 ~l~~~~--g~~~~f~~~~~~~~ 200 (575)
.+.+.. +||+.|.+.++..+
T Consensus 144 ~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 144 PLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHhhhhhHHHHHHHHHHHHH
Confidence 887764 39988876655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=178.51 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
++.+....+...+.. ++...+.+.+++++|.|+.+.+++.+.+.+++.+++++.|++.||+ |||++++++.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 344444444455444 4554555677889999999999999999999999999999999997 99999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++..+.. ..+++.+++.|++.|+|.|...+...+++.+..|+++ |++..++
T Consensus 83 ~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~ 134 (410)
T TIGR00885 83 FLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST---ATRRLNL 134 (410)
T ss_pred HHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH---HHHHHHH
Confidence 88765432 1237778999999999999999999999999988544 8888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--------------------------ccchhHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTH--------------------------SGMDIGFGVSAAAMAVGL 203 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~--------------------------~g~~~~f~~~~~~~~i~~ 203 (575)
.+...++|..++|.+++.+... .+||++|.+.++..++..
T Consensus 135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877422 469999987776544443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=178.44 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=121.6
Q ss_pred hhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHhhccCC
Q 008177 20 AVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY----LGSFWTM-LIFGFVELSGFILLSVQAHLPQ 94 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Grr~~~-~~~~~~~~i~~~~~~~~~~~~~ 94 (575)
++.....+.+.+++|+|.++.+++... .+...+ .+++|.++||+ +||||.+ +.+.++..+...++++..+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 334444444556889999999999655 444444 88999999995 3899975 5666777777667766532
Q ss_pred CCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHH
Q 008177 95 LRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLI 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 174 (575)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.++
T Consensus 80 ----------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~~~~~G~~~ 134 (356)
T TIGR00901 80 ----------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE---LGYGSTIYIVGYRAGMLL 134 (356)
T ss_pred ----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh---hchHHHHHHHHHHHHHHH
Confidence 1224556666777788888888999999999999544 999999999999999999
Q ss_pred HHHHHHHHhhccc--------chhHHHHHHHHHHHHHHHHHH
Q 008177 175 ALTLLVWVQTHSG--------MDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 175 ~~~~~~~l~~~~g--------~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+++++.+..| ||..|++.++..++..+..++
T Consensus 135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888 999999988876665554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-24 Score=230.34 Aligned_cols=397 Identities=14% Similarity=0.088 Sum_probs=226.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccc
Q 008177 38 SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKG 117 (575)
Q Consensus 38 ~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
.+.+++.+...++..++++++|+++||+ |||++++++.++..++.++.+++++.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~------------------------- 99 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY------------------------- 99 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------
Confidence 4578899999999999999999999997 99999999999999999999998620
Q ss_pred hhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhHHHH
Q 008177 118 YKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH---SGMDIGFGV 194 (575)
Q Consensus 118 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~g~~~~f~~ 194 (575)
.++..+.++|+++|++.|+..+..+.++.|..|++. |++..++.+....+|..++..++-.+.+. .+||+.+++
T Consensus 100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~---R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~ 176 (451)
T PF00083_consen 100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH---RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIF 176 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 126779999999999999999999999999999554 99999999988899988887775444333 459999888
Q ss_pred HHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCccc
Q 008177 195 SAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTE 274 (575)
Q Consensus 195 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (575)
..+..++.++...+ .||+|+|+..+++.++|.+++++..+... +
T Consensus 177 ~~~~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~----~ 220 (451)
T PF00083_consen 177 GAIPSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEI----E 220 (451)
T ss_pred cccccccccccccc--------------------------------cccccceeccccccccccccccccccccc----c
Confidence 77655443332222 35666666666666666666653111100 0
Q ss_pred ccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH-HHHHHHHhhccceeeeeeccccccCCCccccChh
Q 008177 275 KFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT-IIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPA 353 (575)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 353 (575)
+.+..+....+......+..|+...+.+. .+++.+....+.... ...+.......... .... +.... .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i-------~~~~--~~~~~-~ 289 (451)
T PF00083_consen 221 DEEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSI-------FENA--GISNS-F 289 (451)
T ss_pred cccccccccccccccccceeeeecccccc-cccccccccccccccccccccccccccccc-------cccc--ccccc-c
Confidence 00000000000000000012222222111 112222211111111 00000000111101 1111 11111 1
Q ss_pred hhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHH
Q 008177 354 SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAP 433 (575)
Q Consensus 354 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 433 (575)
..+....+..++...+... +.+|++||+. +..+.++++++++.++..... .. +.+.......+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~----~~~~~GRr~~-------~i~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~i~~ 354 (451)
T PF00083_consen 290 LATLILGLVNFLGTLLAIF----LIDRFGRRKL-------LIIGLLLMAICSLILGIIFFL---GV-SSSSWWSILSIVF 354 (451)
T ss_pred ccccccccccccccccccc----cccccccccc-------ccccccccccccccccccccc---cc-cccccccccccee
Confidence 1122222222222222222 3466666643 455555555555444310000 00 0000011111121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhH
Q 008177 434 QFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLD 513 (575)
Q Consensus 434 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~ 513 (575)
..+..........+..+.+..|.+|++.|+++.++....+++++.+++.+.+.+.+..+ ..
T Consensus 355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-------------------~~ 415 (451)
T PF00083_consen 355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-------------------GW 415 (451)
T ss_pred eeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------cc
Confidence 22222223334456667888999999999999999999999999998887766532111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 008177 514 LFYWLLAALSLINFFNYLFWSRWYSYNPSLS 544 (575)
Q Consensus 514 ~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (575)
..++++++++++..++.+++.+++++++.+|
T Consensus 416 ~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 416 GVFLIFAGVCLIAIIFVYFFLPETKGKTLEE 446 (451)
T ss_pred ccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence 3567778888888877777888887766543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-16 Score=170.45 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=128.1
Q ss_pred HHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc----ccchH-HHHHHHHHHHHHHHH
Q 008177 11 QAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY----LGSFW-TMLIFGFVELSGFIL 85 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Grr~-~~~~~~~~~~i~~~~ 85 (575)
.+.....+.-...-+|.|++ +.|+|.+++|++...... .+..+++|+++||+ +|||| .++++.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 33444455556677889988 559999999999666654 68899999999994 17775 688878888888888
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 86 LSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
+++... ..+.+.+.+..++.++..+...+...+++.|++|+++ |+++.++..
T Consensus 85 l~~~~~-------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~---r~~~~~~~~ 136 (402)
T PRK11902 85 MAFCPP-------------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE---RGAGAAVKV 136 (402)
T ss_pred HHhcCc-------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhHHHHHHH
Confidence 777522 1235556666677788888889999999999999555 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTH-SGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~i~ 205 (575)
.+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 59999999887765554443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-17 Score=179.39 Aligned_cols=140 Identities=15% Similarity=0.029 Sum_probs=125.2
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 008177 31 NEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQ 110 (575)
Q Consensus 31 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (575)
+.++.+.....+..+.+.+|..++++++|.++||+ |||++++.++++.+++.++.+++++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~------------------- 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN------------------- 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 56677888999999999999999999999999995 9999999999999999999999876
Q ss_pred ccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 008177 111 NCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~ 190 (575)
+..+++.|++.|++.++...+...+++|++++++ |+.+.++ ......++.+++.+++++.. +||+
T Consensus 171 ---------~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~---R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~ 235 (521)
T KOG0255|consen 171 ---------YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ---RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRW 235 (521)
T ss_pred ---------HHHHHHHHHHHHhhccchhHHhHhhheeecCcch---hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHH
Confidence 7889999999999999999999999999999655 9999999 77778888889999888887 8999
Q ss_pred HHHHHHHHHHHHHHH
Q 008177 191 GFGVSAAAMAVGLIS 205 (575)
Q Consensus 191 ~f~~~~~~~~i~~i~ 205 (575)
.+++..+..++.++.
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 236 LFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877765555444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=167.36 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=137.8
Q ss_pred hhhHHHHHHhhhccCCChhh-HHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 20 AVGNNLITYVFNEMHFPLSK-SANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~s~~~-~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
...++..+|+.+++|+|+.| .|.+.+.+..++.+..+++|+++||+ |.|+++.++++..++..++.+++.+
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S------- 114 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS------- 114 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 35677888999999999999 99999999999999999999999996 9999999999999999999999866
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
...+.+.|++.|++.|... +...+++.++|++| |+++.++...+..+|.++++++
T Consensus 115 ---------------------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE---R~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 115 ---------------------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR---YQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999 99999999999555 9999999999999999999999
Q ss_pred HHHHhhcccchhHH---HHHHHHHHHHHHHHHHhc
Q 008177 179 LVWVQTHSGMDIGF---GVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 179 ~~~l~~~~g~~~~f---~~~~~~~~i~~i~~~~~~ 210 (575)
+++ ...+|||.-+ +++.....+++++.+++.
T Consensus 170 ~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 170 GQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999 4467888653 445555666666655543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-15 Score=163.21 Aligned_cols=438 Identities=11% Similarity=0.030 Sum_probs=241.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----hcccchHHHHHH-HH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSD----SYLGSFWTMLIF-GF 77 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~~~~~-~~ 77 (575)
+...+..+.+...+++-...+++++|+ +++|.+..+.+++..+..+...+.+|+.|+++| |+ ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 445566666667777777788888887 489999999999999999999999999999999 56 999998875 55
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 78 VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
...++..+++++.++..+ +.|.... .........+.++..+..++.....+...++++|.+|++++ ++
T Consensus 83 ~~~~~l~ll~~~~~~~~~-------~~~~~~~----~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~-~~ 150 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHL-------FGDNLDK----KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR-RT 150 (477)
T ss_pred HHHHHHHHHHhCchhhhh-------ccccccc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH-HH
Confidence 666777777776442110 0000000 00011123344444455667777888889999999997652 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--hhcc-------------cchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCc
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWV--QTHS-------------GMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSI 222 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l--~~~~-------------g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 222 (575)
+.+.++...+.++|.++|+.++++. .+.. +.+..|++.++..++..+...+..++.+..++++..
T Consensus 151 ~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~ 230 (477)
T TIGR01301 151 RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI 230 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence 6789999999999999999998875 2211 567889998887777766555544432111111000
Q ss_pred hhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhh
Q 008177 223 FTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQ 302 (575)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (575)
++ +..+.++.+ .+..+.+. + +.-
T Consensus 231 --------------------~~--~~~~~~~~~------------------~~~~~~~i-------------~----~~~ 253 (477)
T TIGR01301 231 --------------------NS--EAAPPSKHG------------------EEAFFGEL-------------F----GAF 253 (477)
T ss_pred --------------------hh--hcccccccc------------------hhhhHHHH-------------H----HHH
Confidence 00 000000000 00000000 0 000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeee-ccccccCCCccccChh-hhccchhHHHHHHHHhhhHHHhhcccc
Q 008177 303 VEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQG-SAMDNKITNRFQIPPA-SLQAIPYILLIFVVPLYEIVFVPVASK 380 (575)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~r 380 (575)
....+.+.+.+...++.-.-|..+..+.+.++.+. ..-+......+ ..+ -......+...+...+.+.+..++.+|
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y--~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY--DDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122222222222222222222222221110 00000000000 001 011111111122222334444455566
Q ss_pred cccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hccC-----CCccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 381 FTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTA-ALNS-----NQILS-IFWIAPQFLIFGLSEMFTAVGLIEFF 453 (575)
Q Consensus 381 ~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~-~~~~-----~~~~~-~~~l~i~~~l~g~~~~~~~~~~~~~~ 453 (575)
.++|+ ..-..+.++.++++....+......+. +.+. .+... .+.....+...|+.........++.+
T Consensus 332 ~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~ 405 (477)
T TIGR01301 332 WGAGK------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA 405 (477)
T ss_pred hccch------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 54321 223677777777776665543100000 0000 01111 24556667888888888888889999
Q ss_pred Hhhcchh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 008177 454 YKQSLEG--MQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYL 531 (575)
Q Consensus 454 ~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~ 531 (575)
.+..|++ -.|..+|+.|.+--+...+.....|.+.+..+++ ....+.+.++..+++.+..+
T Consensus 406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~-----------------~~~~~~~~gv~~~~aa~~~~ 468 (477)
T TIGR01301 406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG-----------------NLPAFVVGAVAAFVSGLLAL 468 (477)
T ss_pred HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------------CeeHHHHHHHHHHHHHHHHH
Confidence 9999954 4599999999999999999998877765544432 11245555556666666666
Q ss_pred Hhhcc
Q 008177 532 FWSRW 536 (575)
Q Consensus 532 ~~~~~ 536 (575)
+..++
T Consensus 469 ~~~~~ 473 (477)
T TIGR01301 469 ILLPR 473 (477)
T ss_pred HhCCC
Confidence 66554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-17 Score=161.14 Aligned_cols=122 Identities=17% Similarity=0.118 Sum_probs=108.4
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCC
Q 008177 30 FNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGT 109 (575)
Q Consensus 30 ~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (575)
.++.+.+..-.|.+-+.|.+.+.+.++.+|.++||| |||++++++.+..++.+.+.+.+.+
T Consensus 60 ~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~------------------ 120 (451)
T KOG2615|consen 60 GEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN------------------ 120 (451)
T ss_pred CCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 344455667788999999999999999999999998 9999999999999999999998865
Q ss_pred CccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 110 QNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 184 (575)
+..+.++|++.|+.-|-. ..+.++++|.+++++ |+.+++....+..+|.++||.+||++.+
T Consensus 121 ----------F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~---r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 121 ----------FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY---RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ----------HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh---ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 666788899999987765 567899999999666 9999999999999999999999999987
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=164.44 Aligned_cols=362 Identities=9% Similarity=-0.009 Sum_probs=204.5
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----hcccc-hHHHHHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSD----SYLGS-FWTMLIFGFVELSGFILL 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Gr-r~~~~~~~~~~~i~~~~~ 86 (575)
+..++....+.++++.|+++.+|+++..+|.+....-+.-.+..|+.|+++| |+ || |+-++.+....+++..++
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHHHH
Confidence 4456677777889999999999999999999999999999999999999999 65 99 555666777777776666
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
...++.+ +......+++..++.+++..+......++.+|..++ .++|.+..++...
T Consensus 95 f~~p~~~----------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~--~~eR~~l~~~~~~ 150 (473)
T PRK10429 95 FSAHLFE----------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD--KREREQLVPYPRF 150 (473)
T ss_pred HcCCCCC----------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC--HHHHHHHHHHHHH
Confidence 4322111 112234455555667788888888899999999843 3348898888777
Q ss_pred HHHHHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcc
Q 008177 167 AFCMGQLIALTLLVWVQTH-------SGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~-------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (575)
..++|+.+++.+...+... .+|+....+.++..++..+..++..++.. .+++.++
T Consensus 151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~----------------- 212 (473)
T PRK10429 151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVS----------------- 212 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Ccccccc-----------------
Confidence 7788766666554443221 24555555544444444433333222210 0000000
Q ss_pred cCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH
Q 008177 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT 319 (575)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (575)
++ .++..+.+... .....|.++..+...+..
T Consensus 213 ---~~----------------------------~~~~~~~~~~~------------------~~~~n~~~~~ll~~~~~~ 243 (473)
T PRK10429 213 ---AE----------------------------GSHLTLKDIVA------------------LIYKNDQLSCLLGMALAY 243 (473)
T ss_pred ---cc----------------------------ccCCCHHHHHH------------------HHhcCHHHHHHHHHHHHH
Confidence 00 00000000000 000112222221111111
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLF 399 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~ 399 (575)
............++..+.. .. ......+..+..+..+++.++..++. +|+++| +.+.++.+
T Consensus 244 ~~~~~~~~~~~~y~~~y~~--~~------~~~~~~~~~~~~i~~ii~~~~~~~l~----~r~gkk-------~~~~~~~~ 304 (473)
T PRK10429 244 NIASNIINGFAIYYFTYVI--GD------ADLFPYYLSYAGAANLVTLILFPRLV----KSLSRR-------ILWAGASI 304 (473)
T ss_pred HHHHHHHhhheeeEEEEEC--CC------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCcH-------HHHHHHHH
Confidence 1111121222222222211 11 00112233334445555556655444 555443 33455555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHHHHHHHHH
Q 008177 400 VATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSL-------EGMQSFLTAMTYCS 472 (575)
Q Consensus 400 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~ 472 (575)
+..++.+.+..... . ...+.+.+++..++.+++.+...+..++++.|..+ ++..|...|...+.
T Consensus 305 ~~~~~~~~~~~~~~--------~-~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~ 375 (473)
T PRK10429 305 FPVLSCGVLLLMGL--------A-APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMV 375 (473)
T ss_pred HHHHHHHHHHHHhc--------c-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHH
Confidence 54444433322100 0 11233444555677788888888888899999876 34467788999999
Q ss_pred HhHHHHHHHHHHHHHHhhccc
Q 008177 473 YSFGFYLSSLLVSLVNKITSR 493 (575)
Q Consensus 473 ~~lg~~lg~~l~~~i~~~~~~ 493 (575)
.-+|..+++.+.+.+.+..+.
T Consensus 376 ~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 376 VKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998876665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=165.56 Aligned_cols=170 Identities=16% Similarity=0.125 Sum_probs=130.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-----chHHHHHHHHHHH-H
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG-----SFWTMLIFGFVEL-S 81 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~~~~~~~~~-i 81 (575)
....+...+. +.....++.++++++|+|+++++.+.+...+...+-.+ +|.++||+ + ||+.++++.++.. +
T Consensus 32 ~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~~~~ 108 (468)
T TIGR00788 32 LQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLGSAI 108 (468)
T ss_pred HHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHHHHH
Confidence 3355667777 77888888999999999999999999999999888665 99999997 8 7888888876653 3
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+...++..++ ......+.+++.+++.+...+..-++..|..+ ++++.++...
T Consensus 109 ~~~~l~~~~~---------------------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~ 160 (468)
T TIGR00788 109 LYGLLPGKVS---------------------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLV 160 (468)
T ss_pred HHHhcccccc---------------------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCee
Confidence 3332222111 12333446788999999999999999999998 5544455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+...++|..+|+.++|++.+..+|+..|++.+...++..+...+
T Consensus 161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 77777788999999999999999999999999988776666443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-15 Score=158.71 Aligned_cols=172 Identities=12% Similarity=0.021 Sum_probs=122.0
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh----cccchH-HHHHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDS----YLGSFW-TMLIFGFVELSGFILL 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~----~~Grr~-~~~~~~~~~~i~~~~~ 86 (575)
+..+.....+..+++.|+++.+|+|+.++|.+.....+.-.+..|+.|+++|| + |||| .++.+.+...++..++
T Consensus 19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~l~ 97 (444)
T PRK09669 19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCLLT 97 (444)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHHHH
Confidence 34455566677889999999999999999999999999999999999999999 5 8754 4556667777776655
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
...++. ........+++..++.+.+..+......++.+|+.++ .++|.+..++...
T Consensus 98 f~~p~~----------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~eR~~l~~~r~~ 153 (444)
T PRK09669 98 FYTPDF----------------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PRERHSLQSWRFA 153 (444)
T ss_pred HhCCCC----------------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHHHHHHHHHHHH
Confidence 443211 1123345556666666777777777888999998854 3448888888888
Q ss_pred HHHHHHHHHHHHHHHHhh-------cccchhHHHHHHHHHHHHHHHHHH
Q 008177 167 AFCMGQLIALTLLVWVQT-------HSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
..++|..+++.+...+.. ..||+..+.+.++..++..++.++
T Consensus 154 ~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 154 LSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888765544432 246777666666555544444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=153.90 Aligned_cols=175 Identities=16% Similarity=0.028 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHH--HHHHHHHHHHHhhhh-HHHhhhcccchHHHHHHHHHH-H
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANI--VTNFIGTVFLLSLFG-GFLSDSYLGSFWTMLIFGFVE-L 80 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i--~~~~~~~~~~~~~~~-G~laD~~~Grr~~~~~~~~~~-~ 80 (575)
..+..+.+...+.+....+.+|.|++ +.|.|+.++|.+ .+...+...+.+|+. ++.+||+ ||||..++...+. .
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHH
Confidence 44555666677777778899999987 569999999997 455677777777777 5579996 9999976665432 2
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
+....++... +. ......++....+.++..+...+...++..|..+ +++++.+
T Consensus 82 ~~~~~~~~~~--~~----------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~---~~~~~~~ 134 (390)
T TIGR02718 82 ACLASLALVG--PD----------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFN---GRTLAKG 134 (390)
T ss_pred HHHHHHHcCC--cc----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HhhhhHH
Confidence 2233333210 10 0112223334444556666666777777777766 3337777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..++
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 777877889999999999899999999999999988776655554444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=156.83 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=98.8
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHH-HHHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY---LGSFWTM-LIFGFVELSGFILLS 87 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~-~~~~~~~~i~~~~~~ 87 (575)
+..+++...+.++++.|+++.+|+++.++|.+.+...+...+..++.|+++||. +||||.. +.+.+...+...++.
T Consensus 18 ~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 97 (448)
T PRK09848 18 VANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF 97 (448)
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 345666666778888999999999999999999999999999999999999994 2777655 555554554444432
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
..+. .. .........++...+.+++.+...+...++..+..++ .++|.+..++..++
T Consensus 98 ~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~r~~~~~~r~~~ 154 (448)
T PRK09848 98 WVPT--DW-------------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ--PQSRARLGAARGIA 154 (448)
T ss_pred hCcC--CC-------------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC--HHHHHHHHHHHHHH
Confidence 2110 00 0111233344555677888888888888887877764 23377776665543
Q ss_pred -----HHHHHHHHHHHHHH
Q 008177 168 -----FCMGQLIALTLLVW 181 (575)
Q Consensus 168 -----~~lg~~~~~~~~~~ 181 (575)
.+++..++|.+.+.
T Consensus 155 ~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 155 ASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 34555566666543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-14 Score=154.11 Aligned_cols=385 Identities=10% Similarity=0.042 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.-..+....|+..+++-.+.++++.|++ +.|+|..|+|.+.+...+...+.++++|.++||+..+||.+.+..++.++.
T Consensus 3 ~~~rLs~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 3 LKFRLSLMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 3455666677777777778899999998 578999999999999999999999999999999744678887777766666
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+....++ ++.+++..++..+......|...++.-+...+ +.+-++
T Consensus 82 ~~~~~~~~~----------------------------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~-----~~~~YG 128 (400)
T PF03825_consen 82 LLLLAFSSS----------------------------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD-----RGKDYG 128 (400)
T ss_pred HHHHHHhcc----------------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc-----ccCCCC
Confidence 555555433 44455666667777777777777777776542 223344
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhccc---chhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhc
Q 008177 163 VAYFAFCMGQLIALTL-LVWVQTHSG---MDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRK 238 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~-~~~l~~~~g---~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (575)
-......+|..++... ++.+....+ ....+++.+...++..... +..|+.+ ++++..+
T Consensus 129 ~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~---~~~~~~~-------------- 190 (400)
T PF03825_consen 129 RIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTP---PKRSAKE-------------- 190 (400)
T ss_pred cchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCc---cccccCC--------------
Confidence 4344455666655433 233332222 2345555544332222211 2222221 1110000
Q ss_pred ccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHH-HHHH
Q 008177 239 QICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVV-PIFA 317 (575)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 317 (575)
+.+ +..+.+.. ++...++.+.+. ..+.
T Consensus 191 -----~~~----------------------------~~~~~~~~-------------------~llk~~~~~~Fll~~~l 218 (400)
T PF03825_consen 191 -----SVK----------------------------KLLGLDAL-------------------KLLKNPRFLVFLLAAFL 218 (400)
T ss_pred -----Ccc----------------------------cccchHHH-------------------HHhcCccHHHHHHHHHH
Confidence 000 00000000 000011111111 1111
Q ss_pred HHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHH
Q 008177 318 CTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVG 397 (575)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g 397 (575)
....+... ....+.+..+. . |+. .........+..+.=.++ -...+++.+|+ +....+.++
T Consensus 219 ~~~~~~~~-~~f~~~yl~~~---g-----g~~--~~~~g~~~~l~~~aEi~~-f~~~~~~~~r~-------g~~~ll~~a 279 (400)
T PF03825_consen 219 IGISHAAY-YTFFSIYLQEL---G-----GYS--GSTIGILWALGVVAEIPF-FFFSGRFLKRF-------GIKWLLLLA 279 (400)
T ss_pred HHHHHHHH-HHHHHHHHHHc---c-----cch--hhHHHHHHHHHHHHHHHH-HHHHHHHHHhc-------CHHHHHHHH
Confidence 11111111 11111111110 0 011 111111111222211111 12223333443 556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-
Q 008177 398 LFVATFSMVAAALIEKKRRTAALNSNQILSIFWI----APQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCS- 472 (575)
Q Consensus 398 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~- 472 (575)
.+..++-+.++.... .+.+.. .....+.|+..++.......|+.+.+|++.|++++++++..
T Consensus 280 ~~~~~vR~~l~a~~~-------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~ 346 (400)
T PF03825_consen 280 LVAYAVRWLLYAYFS-------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALS 346 (400)
T ss_pred HHHHHHHHHHHHHhc-------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 888888888777652 122222 22235689999999999999999999999999999998775
Q ss_pred HhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 473 YSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 473 ~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
+.+|..+|..+.|.+.+..+.+ ....+..+|.+.+++.++..+++++..|+
T Consensus 347 ~Glg~~iG~~igG~l~~~~g~~-------------~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 347 FGLGGAIGSLIGGWLYDAFGAR-------------GMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhcch-------------hhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5799999999999997755432 11223456666677777777777666553
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-15 Score=153.56 Aligned_cols=391 Identities=11% Similarity=0.050 Sum_probs=221.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH--
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVE-- 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~-- 79 (575)
++.|......++..++.-...++.+.+++++.|+|.+++|.+.+...+...+.+|+.|.++||+ |.||-++......
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3566666677777777777899999999988999999999999999999999999999999996 9777655443322
Q ss_pred HHHHHHH-HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 80 LSGFILL-SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 80 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
..+.... .+.+-+. .-++++.++.|+..+.......+.. |.+-++-+++.+
T Consensus 86 l~~pff~~v~~pll~---------------------------~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~sr~~~ 137 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------------SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVSRRNG 137 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------------TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHhc
Confidence 2222222 2211000 0023333333444343333332222 333322233344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhc
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRK 238 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (575)
-=+|-..+...+|.+++..++|.+.+ .+-+..||+.....++..++....++...++.+..+.
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~---------------- 200 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA---------------- 200 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT----------------
T ss_pred CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc----------------
Confidence 44555667788999999999999886 4567788877665544444434333211111000000
Q ss_pred ccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHH
Q 008177 239 QICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFAC 318 (575)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (575)
+. + ..++.+..|... ..++++.+ .+..+...
T Consensus 201 ----~~-----~---------------------~~~~~~~~~~~~------------------l~k~~~fw-~~~l~v~g 231 (412)
T PF01306_consen 201 ----LG-----A---------------------KKDKVSLKDVLS------------------LFKMRNFW-FFVLFVIG 231 (412)
T ss_dssp ----SS-----S---------------------------HHHHHH------------------HTTSHHHH-HHHHHHHH
T ss_pred ----cc-----c---------------------CCCCCcHHHHHH------------------HhcchhHH-HHHHHHHH
Confidence 00 0 000000000000 00112222 22222233
Q ss_pred HH-HHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHH
Q 008177 319 TI-IFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVG 397 (575)
Q Consensus 319 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g 397 (575)
.. .+...-+|.+.++..+ .+.. +..+..++....+..++=.+++ .+..++.+|+ +++..+.++
T Consensus 232 ~~~~Y~vfdqqf~~y~~~~---f~~~-----~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~ri-------g~k~~Llla 295 (412)
T PF01306_consen 232 VAAIYDVFDQQFPIYFASF---FQSA-----GQGNQMYGYLWSVQVFLEALMM-FFSPWLINRI-------GAKNLLLLA 295 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHT---SSSH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---hccc-----ccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhc-------ChHhHHHHH
Confidence 33 3333334443333211 1110 1123334444444433333222 3344555665 455567777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHhHH
Q 008177 398 LFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMT-YCSYSFG 476 (575)
Q Consensus 398 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg 476 (575)
..++++-....+... +.+++.+.-.+.++-..+...+..=|+.+.+|++..++...+. ++..++|
T Consensus 296 g~i~~iRi~~~~~~~--------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~ 361 (412)
T PF01306_consen 296 GVIMAIRIIGSGFAT--------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIG 361 (412)
T ss_dssp HHHHHHHHHHHHT----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHhhhc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 777888877777663 6677788889999988888888899999999999999999885 6888899
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 477 FYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 477 ~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
..+.+.+.|.+. ++.+++..|++++.+.++..++..+..++
T Consensus 362 ~~i~s~~~G~ly-------------------d~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 362 IIILSPLAGYLY-------------------DRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhhhHHhhH-------------------hhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999988874 44555667888888877766666665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=157.74 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=120.7
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
.....++.+++|- .....|+.+...++..+..++.|.|+|.| |||+.++.+.++..+|.++++.+++
T Consensus 64 a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~----------- 130 (599)
T PF06609_consen 64 ASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN----------- 130 (599)
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc-----------
Confidence 3445688889986 47788999999999999999999999997 9999999999999999999999876
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
...++.+..+.|+|.|.... ....++|..|. |.|..+..+...........++.++..+
T Consensus 131 -----------------~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~---k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 131 -----------------MNTFIAGMVLYGVGAGVQEL-AALAISELVPN---KWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred -----------------HHHHHHHHHHHHHhhHHHHH-HHHHHHHhccc---chhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 66689999999999877654 45568999994 4487777666655555555677777667
Q ss_pred hhcccchhHHHHHHHHHHHHHHHH
Q 008177 183 QTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 183 ~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
..+.+|||.|++..+...++++..
T Consensus 190 ~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 190 AAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHH
Confidence 667799999999988766655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.3e-15 Score=148.45 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=120.8
Q ss_pred hhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 19 AAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 19 ~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
......+.+.+++.++++..|++++...+..++.+++++.|++.+|+ |+|+.+++++.++++|..+..-+++
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~------- 100 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS------- 100 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 33445566778889999999999999999999999999999999997 9999999999999999999875544
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
...+..++++.++.+.|.+....+.+++++...|++. -..-+++.+....+|+.++|.+
T Consensus 101 ------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~---a~~rlnl~q~fn~lGa~~gp~~ 159 (422)
T COG0738 101 ------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES---AAFRLNLAQAFNGLGAILGPLL 159 (422)
T ss_pred ------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh---HHHHHHHHHHhhhhHHHHHHHH
Confidence 2348889999999999999999999999999999765 4555778888899999999999
Q ss_pred HHHHhh
Q 008177 179 LVWVQT 184 (575)
Q Consensus 179 ~~~l~~ 184 (575)
++++..
T Consensus 160 g~~lil 165 (422)
T COG0738 160 GSSLIL 165 (422)
T ss_pred HHHHHH
Confidence 999876
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=157.37 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=135.3
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 008177 32 EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQN 111 (575)
Q Consensus 32 ~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (575)
.++-.++++|++.+.+.+.+.+..++.|.+.||+ |+|-.+++|+.++...+++.++..+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s-------------------- 158 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS-------------------- 158 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch--------------------
Confidence 4566789999999999999999999999999995 9999999999999999999999766
Q ss_pred cccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 008177 112 CQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIG 191 (575)
Q Consensus 112 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~ 191 (575)
+++++++|.+||+|.++...+..++++|.||++. +|++++|+.-....+|-.+||.+||.+.+..|.+.+
T Consensus 159 --------y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~--er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 159 --------YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN--ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred --------hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch--hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 6789999999999999999999999999999754 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 008177 192 FGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 192 f~~~~~~~~i~~i~~~~~~~ 211 (575)
|.+.++.+++-....++..+
T Consensus 229 FlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHHHHHheeC
Confidence 99998887777666555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=163.88 Aligned_cols=141 Identities=15% Similarity=0.120 Sum_probs=105.6
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccc
Q 008177 35 FPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQE 114 (575)
Q Consensus 35 ~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (575)
.++...+.+..+..+|..+++++.|+++||+ |||+++-..+++.+++++++++... .+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~---------------------~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG---------------------TT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC---------------------CC
Confidence 6677888888889999999999999999997 9999999999999999998777533 12
Q ss_pred ccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH----HHHhhc-----
Q 008177 115 AKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL----VWVQTH----- 185 (575)
Q Consensus 115 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~----~~l~~~----- 185 (575)
....-...+...|++.|+|.|+-+|...++.+|... .++|+...+....+.+.|...|.+++ .-+...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an---~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~ 215 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN---KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPS 215 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh---hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCC
Confidence 222335668899999999999999999999999988 44488777665444455544444432 222111
Q ss_pred ------ccchhHHHHHHHHHH
Q 008177 186 ------SGMDIGFGVSAAAMA 200 (575)
Q Consensus 186 ------~g~~~~f~~~~~~~~ 200 (575)
.=||..|.++++..+
T Consensus 216 ~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 216 TYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 128888887766444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-15 Score=148.87 Aligned_cols=159 Identities=10% Similarity=-0.018 Sum_probs=127.8
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAH 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~ 91 (575)
..+........+.+.+-+....+.+..|..++......+..+++..+|.++|++ |||+...+.+....+.-.+.+.+++
T Consensus 87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~spn 165 (528)
T KOG0253|consen 87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASPN 165 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCCC
Confidence 334444445556666667788899999999999999999999999999999996 9999999999888888777777655
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHH
Q 008177 92 LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMG 171 (575)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 171 (575)
+..+++.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....+|
T Consensus 166 ----------------------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~---r~~~~V~~-~~waig 212 (528)
T KOG0253|consen 166 ----------------------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH---RWLLTVMS-FFWAIG 212 (528)
T ss_pred ----------------------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC---CCcchhHH-HHHHHH
Confidence 66699999999999999 8999999999999766 66665555 567889
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 172 QLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 172 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
.++...+.=.+..+.||||-.........+...
T Consensus 213 ~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 213 QVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR 245 (528)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Confidence 998888876677888999987776654333333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=158.03 Aligned_cols=359 Identities=13% Similarity=0.045 Sum_probs=225.2
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----hcccchHHHH-HHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSD----SYLGSFWTML-IFGFVELSGFILL 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~~~-~~~~~~~i~~~~~ 86 (575)
+...+.......++..|+++.+|+++..++.+.....+...+..|+.|.++| |+ ||||..+ ++.+...++..++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4455666667778999999999999999999999999999999999999999 76 9776555 5667788877777
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
.... |. +.........+.+..++..++.........++..|..+. .++|.+..++...
T Consensus 90 f~~~--p~------------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~--~~~R~~l~~~~~~ 147 (428)
T PF13347_consen 90 FSPP--PA------------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD--PDERTRLSSWRMI 147 (428)
T ss_pred hccc--cc------------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc--HhhhhhHHHHHHH
Confidence 7541 10 000011233456666777899999999999999999875 2348999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcc
Q 008177 167 AFCMGQLIALTLLVWVQTHS-------GMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQ 239 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (575)
...+|..+...+.+.+.... +|++...+.++..++..++..+..++...+.+++++.
T Consensus 148 ~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~---------------- 211 (428)
T PF13347_consen 148 FSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK---------------- 211 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc----------------
Confidence 88888876666666554322 5888777777666666655555444310000000000
Q ss_pred cCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH
Q 008177 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT 319 (575)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (575)
.++.+ .++.. .++ |.+..........
T Consensus 212 ------------------------------------~~~~~-------------~~~~~----~~n-r~~~~l~~~~~~~ 237 (428)
T PF13347_consen 212 ------------------------------------ISLRD-------------SLRSL----FRN-RPFRILLLAFFLQ 237 (428)
T ss_pred ------------------------------------ccccc-------------chhhh----ccc-chHHHHHHHHHHH
Confidence 00000 00000 001 1111111111111
Q ss_pred HHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHH
Q 008177 320 IIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLF 399 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~ 399 (575)
...+........++..+.. .. ....+.+.....+..++..++..++. +|+++|+ .+..+.+
T Consensus 238 ~~~~~~~~~~~~y~~~~vl--~~------~~~~~~~~~~~~~~~~v~~~~~~~l~----~r~gk~~-------~~~~~~~ 298 (428)
T PF13347_consen 238 WLAFALMNTFLPYYFTYVL--GN------EGLISIFMLIFFVASIVGSPLWGRLS----KRFGKKK-------VYIIGLL 298 (428)
T ss_pred HhhhhhhhhHHHHHHHHHh--cC------chhhHHHHHHHHHHHHHHHHHHHHHH----HHcccee-------ehhhhHH
Confidence 1111111111111111111 11 11123344455566666666666555 5655543 3677777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hhHHHHHHHHHHH
Q 008177 400 VATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLE-------GMQSFLTAMTYCS 472 (575)
Q Consensus 400 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~~~~ 472 (575)
+..++.+++.... ..+.++..+..++.+++.+......++...|..+. +..|...|+.++.
T Consensus 299 ~~~~~~~~~~~~~------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~ 366 (428)
T PF13347_consen 299 LAALGFLLLFFLG------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFF 366 (428)
T ss_pred HHHHHHHHHHHHH------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhh
Confidence 7777777766653 13566777888889999998888888888888874 4469999999999
Q ss_pred HhHHHHHHHHHHHHHHhhcccC
Q 008177 473 YSFGFYLSSLLVSLVNKITSRT 494 (575)
Q Consensus 473 ~~lg~~lg~~l~~~i~~~~~~~ 494 (575)
..++..+++.+.+.+.+..+..
T Consensus 367 ~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 367 IKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999888776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-16 Score=173.25 Aligned_cols=199 Identities=18% Similarity=0.162 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~ 85 (575)
..+...++......++.+...+.+.++++++.++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.+++++|.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHHHHHHH
Confidence 344444555566678888888889999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHhhccCCCC----------------CCCCC-----CCCCCCCCCcccccc--chhHHHHHHHHHHHHHcccccccchh
Q 008177 86 LSVQAHLPQLR----------------PSPCN-----MLTDTDGTQNCQEAK--GYKALILYLALYLVALGSGCLKPNII 142 (575)
Q Consensus 86 ~~~~~~~~~~~----------------~~~~~-----~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~g~g~~~~~~~ 142 (575)
+++.+.+-.-. +.-|. +...++-...|.+.+ ...+..++++|+++|+|.+...+...
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 98865211100 00110 000000001232222 22466788999999999999999999
Q ss_pred hhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------cchhHHHHHHHHHH
Q 008177 143 SHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHS----------------------GMDIGFGVSAAAMA 200 (575)
Q Consensus 143 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~----------------------g~~~~f~~~~~~~~ 200 (575)
+++.|++|+++ |+.++++++.+..+|.++|+++++++.+.+ +|+..|++.++..+
T Consensus 195 ~~i~d~~~~~~---~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 195 SYIDDFAKSKN---SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred hhhhccCCccc---cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999655 999999999999999999999999887532 27777887776655
Q ss_pred HHHHHHHH
Q 008177 201 VGLISLIF 208 (575)
Q Consensus 201 i~~i~~~~ 208 (575)
+..+.+++
T Consensus 272 l~~v~l~~ 279 (633)
T TIGR00805 272 LTSIPFFF 279 (633)
T ss_pred HHHHHHHh
Confidence 55444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-13 Score=149.73 Aligned_cols=157 Identities=14% Similarity=0.001 Sum_probs=120.3
Q ss_pred hhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 008177 17 AIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLR 96 (575)
Q Consensus 17 ~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (575)
..|++. .....+++++|+|..+.+++.+.. ....++.+++|+++||+ |||++++++.+++.+++++++++.+-.
T Consensus 42 ~~y~fs-v~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~--- 115 (591)
T PTZ00207 42 FMYAFN-LISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEV--- 115 (591)
T ss_pred HHHHHH-HHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 344444 444567889999999999998774 34456777899999997 999999999999999999999863200
Q ss_pred CCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHH-H
Q 008177 97 PSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLI-A 175 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~ 175 (575)
-..+.+.+++.|++.|+|.+...+.....+.++|| ++ |+++.++...+.++|+++ +
T Consensus 116 -------------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---RG~a~Gi~~~~~gLGsaI~~ 172 (591)
T PTZ00207 116 -------------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---RGAVVAIMKTFTGLGSAILG 172 (591)
T ss_pred -------------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh---hHHHHHHHHHHHHHHHHHHH
Confidence 01247889999999999999888888899999997 33 899999999999999975 5
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 176 LTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 176 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
++..+++. .+|+..|++.++..++..+
T Consensus 173 ~l~~~l~~--~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 173 SIQLAFFS--DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence 55555554 3577767666554443333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=157.79 Aligned_cols=418 Identities=14% Similarity=0.098 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHhhhhhhHH---HHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNN---LITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.+.+..|+.+...|++... +-..+.++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.+++.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 34444555555555555433 44556789999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHH-HHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLA-LYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
|.++.+++.+ .+.+++. =++.|+|.|........+++.+|+ ++ |+.+
T Consensus 124 g~~lssF~~~----------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~---kk-R~lA 171 (509)
T KOG2504|consen 124 GLLLSSFATS----------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE---KK-RALA 171 (509)
T ss_pred HHHHHHHHhh----------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhH---HH-HHHH
Confidence 9999999876 4444444 556899999999999999998776 33 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhccc
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQI 240 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (575)
.++...+..+|..+=|.+..++.+.+|||..+++.+...+-..+.....+|.....++.+ . .+... ....
T Consensus 172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~-~-~~~~~--------~~~~ 241 (509)
T KOG2504|consen 172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE-E-KDLRN--------SAAS 241 (509)
T ss_pred HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh-h-hhhcc--------cccc
Confidence 999999999999999999999999999999998877766555555555555332222220 0 00000 0000
Q ss_pred CCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCc---------ccchhhHHHHHHHhh
Q 008177 241 CPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWK---------LCTVTQVEQVKIIMS 311 (575)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~ 311 (575)
.+........ ... .......+.....+ ....+ ....++ ..+.+...+...+..
T Consensus 242 ~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~ 303 (509)
T KOG2504|consen 242 VESTPKPVEL-RIS-------ERDSGLKKLSLSNL------ATLKR----GPDKWRNSPLQAFLSMLDLSLLKDPKFLLL 303 (509)
T ss_pred cccccccccc-ccc-------cCCCCCCcccccch------hhhhh----CCccccccchhhhhhhhhHHHHcCchHHHH
Confidence 0000000000 000 00000000000000 00000 000000 000111111111111
Q ss_pred HHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCch
Q 008177 312 VVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPL 391 (575)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~ 391 (575)
.....+....+......++.+.. +..+. ....+.+..+..+..+++-++.+.+.|+.. ++..
T Consensus 304 ~~~~~~~~~g~~~p~~~l~~~~~------~~g~~---~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~ 365 (509)
T KOG2504|consen 304 ALSNLFAYLGFNVPFVYLPSYAK------SLGLS---SNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRAL 365 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hcCCC---hhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchH
Confidence 11111111111111111111111 11110 122344555666666667777766554222 1233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 008177 392 QRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYC 471 (575)
Q Consensus 392 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 471 (575)
....+++++.+++.++.... .+.+.+....+++|+..+.........+.+.++.+.-..+.|+..+
T Consensus 366 ~~~~~~ll~~gl~~~~~p~~--------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 366 VLFLLTLLIAGLARLFLPFA--------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 44566666666666544443 2444556666788888888777766788999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 008177 472 SYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFW 533 (575)
Q Consensus 472 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~ 533 (575)
.+.++..+|+.+.+.+.+.++ +|+..|+..+...+++.+..+..
T Consensus 432 ~~gi~~l~gpPiag~~~d~tg------------------~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDITG------------------NYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HhHHHHHcCcccceeeeeccC------------------CeeeehhhcChHHHHHHHHHHHh
Confidence 999999999999886654322 13345666666666655444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=142.25 Aligned_cols=173 Identities=12% Similarity=0.055 Sum_probs=123.3
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHHH-HHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY---LGSFWTML-IFGFVELSGFILLS 87 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~-~~~~~~~i~~~~~~ 87 (575)
+..++.+..+..++..|+++.+|+++..+|.+....-+.-.+.-|+.|+++||. +||||..+ ++.+...++.+++.
T Consensus 19 ~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf 98 (460)
T PRK11462 19 AASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY 98 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH
Confidence 344566666778899999999999999999999999999999999999999972 49876665 45567777776655
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
..++.+ .......+.+.-.+..++..+......++.+|+.+. .++|++..++....
T Consensus 99 ~~p~~s----------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~eRt~l~s~r~~~ 154 (460)
T PRK11462 99 STPDLS----------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQRISLQSWRFVL 154 (460)
T ss_pred hCCCCC----------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence 432110 112234455556667888888888889999999875 45599999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHH
Q 008177 168 FCMGQLIALTLLVWVQTHS-------GMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.++|..+++.+...+.... +|+....+.++..+++..+++.
T Consensus 155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888877765544332 4555554444444444433333
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-14 Score=149.76 Aligned_cols=151 Identities=14% Similarity=0.050 Sum_probs=129.0
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 008177 29 VFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDG 108 (575)
Q Consensus 29 l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (575)
++++++....+.+.+.++|.+++.++.+++|.|.||+ +-.+.+....++..+-.++.+..+|
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~s----------------- 133 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVHS----------------- 133 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence 4478889999999999999999999999999999997 9777777777777666666666655
Q ss_pred CCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----
Q 008177 109 TQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQ----- 183 (575)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~----- 183 (575)
++.+++.|++.|+..++..|....+++.++.++| |+.-+++++...++|.++|.++...+.
T Consensus 134 -----------~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e---~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 134 -----------FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE---RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred -----------hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh---hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 6679999999999999999999999999999666 999999999999999999999987753
Q ss_pred -hcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 184 -THSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 184 -~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
...||||.|++.+++.++..++.++..|
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 3468999999999877766666655544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-13 Score=133.80 Aligned_cols=334 Identities=15% Similarity=0.172 Sum_probs=225.0
Q ss_pred HHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccC
Q 008177 14 EMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLP 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 93 (575)
.+.++-++-+.+. -+++++|+|.+.+|++.+.-.+...+.+++..+++.|+ |.++.+..++++.++|..+=....
T Consensus 24 LR~~itsvgPLL~-~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~~--- 98 (395)
T COG2807 24 LRPAITSVGPLLD-EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLGG--- 98 (395)
T ss_pred cchhhhhhhhhHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccc---
Confidence 5566666655554 66889999999999999999999999999999999996 999999999999999998877641
Q ss_pred CCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHH
Q 008177 94 QLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQL 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 173 (575)
...++.+-.+.|.|.+..++..++.+-+.||+ + .+..+++|....++|+.
T Consensus 99 --------------------------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk---~-~~~mtglYs~sl~~~aa 148 (395)
T COG2807 99 --------------------------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK---R-VGLMTGLYSTSLGAGAA 148 (395)
T ss_pred --------------------------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc---c-hhhHHhHHHHHHHHHHH
Confidence 45688888999999999999999999999983 3 58899999999999999
Q ss_pred HHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccc
Q 008177 174 IALTLLVWVQTHS-GMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQ 252 (575)
Q Consensus 174 ~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (575)
+++.+...+.++. |||..+.+-+...++++++.+.-..+. +.+..+.. ..
T Consensus 149 Laa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~--~~~~~~~~-------------------~~-------- 199 (395)
T COG2807 149 LAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALRE--QAASIATK-------------------LV-------- 199 (395)
T ss_pred HHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccc--cccccccc-------------------cc--------
Confidence 9999999998887 799998888887777777665432111 11110000 00
Q ss_pred cccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccce
Q 008177 253 NNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTF 332 (575)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (575)
. ..+-|+ +...+...+.+-..+..+|..+.+++..
T Consensus 200 --------------~-----------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~i 234 (395)
T COG2807 200 --------------S-----------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAI 234 (395)
T ss_pred --------------c-----------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 000111 1122223344556667888888888887
Q ss_pred eeeeeccccccCCCccccChhhhccchh---HHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008177 333 SVQQGSAMDNKITNRFQIPPASLQAIPY---ILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAA 409 (575)
Q Consensus 333 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~ 409 (575)
+.++.. +.. ....+-.+.. +..-+..|.. . +|.+ +.+........++.++..-+.
T Consensus 235 li~~G~--sa~-------~aG~llsl~~l~~~~~~ll~P~l---a----~R~~------n~r~~~~~~~~~~l~G~~G~~ 292 (395)
T COG2807 235 LIDRGL--SAA-------EAGSLLSLMQLAQLPTALLIPLL---A----RRSK------NQRPLVVLALLLMLVGLVGLL 292 (395)
T ss_pred HHHcCC--CHH-------HhhhHHHHHHHHHHHHHHHHHHH---H----HHhc------ccchHHHHHHHHHHHHHHHHH
Confidence 765422 111 1121222222 2222333333 2 3321 112223444444444544444
Q ss_pred HHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008177 410 LIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLE-GMQSFLTAMTYCSYSFGFYLSSLLVSLVN 488 (575)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~~~~lg~~lg~~l~~~i~ 488 (575)
+.+ .+..++| .+++|+|.+..+|.....+....++ +.-+.-.|+.+..+.+-...||.+.|.+.
T Consensus 293 ~~P-----------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh 357 (395)
T COG2807 293 LAP-----------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH 357 (395)
T ss_pred Hhh-----------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence 442 1122333 3778999998888888877755544 45566777888888888999999999998
Q ss_pred hhccc
Q 008177 489 KITSR 493 (575)
Q Consensus 489 ~~~~~ 493 (575)
|.+++
T Consensus 358 Da~gs 362 (395)
T COG2807 358 DATGS 362 (395)
T ss_pred HhcCC
Confidence 76553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=137.12 Aligned_cols=357 Identities=12% Similarity=0.074 Sum_probs=223.4
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHH-HHHHHHHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY---LGSFWT-MLIFGFVELSGFILLS 87 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~-~~~~~~~~~i~~~~~~ 87 (575)
+..++.+-.+..++..|.++.+|+++..+|.+....-+.=++.-|+.|.+.||. +||+|- ++.+.+.+++.+.++-
T Consensus 22 ~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F 101 (467)
T COG2211 22 FASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF 101 (467)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH
Confidence 344566667788999999999999999999999999999999999999999974 377655 5555577888888887
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
.+++... +.+....++.-.+.+++.........++.+|+.+. .++|.+..++....
T Consensus 102 ~~p~~~~----------------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER~~l~s~R~~~ 157 (467)
T COG2211 102 ITPDFSM----------------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQERASLTSWRMVF 157 (467)
T ss_pred cCCCccc----------------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHHHHHHHHHHHH
Confidence 7643111 12345566677788999999999999999999875 55699999999999
Q ss_pred HHHHHHHHHHHHHHHhh-------cccchhHHHHHHHHHHHHHHHHHHhcceeee-cCCCCCchhhHHHHHHHHHhhhcc
Q 008177 168 FCMGQLIALTLLVWVQT-------HSGMDIGFGVSAAAMAVGLISLIFGIFVYRN-KSPRGSIFTPIAQVFVAAITKRKQ 239 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (575)
.++|..+...+...+.. ..||+..-.+.++..++.++.+++..++... ..+.++.
T Consensus 158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~----------------- 220 (467)
T COG2211 158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG----------------- 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc-----------------
Confidence 99997777666555543 3456666555555555555555554332211 1100000
Q ss_pred cCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHH
Q 008177 240 ICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACT 319 (575)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (575)
.+..+.+.... ....|.++..+.. .
T Consensus 221 ----------------------------------~~~~~~~~~~~------------------~~~Nrp~~~~l~~---~ 245 (467)
T COG2211 221 ----------------------------------VKLKLKDSFLL------------------IFKNRPLLLLLLM---N 245 (467)
T ss_pred ----------------------------------ccccHHHHHHH------------------HHccchHHHHHHH---H
Confidence 00000000000 0011122222212 2
Q ss_pred HHHHHHHhhccc---eeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHH
Q 008177 320 IIFNTILAQLQT---FSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGV 396 (575)
Q Consensus 320 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~ 396 (575)
.+.+...+...+ ++..+. ++.. ...+...........+++.++.. ++.+|++|| +....
T Consensus 246 l~~~~~~~i~~s~~~yy~~y~--lg~~-----~l~~~~~~~~~~~~~l~~~~~~p----~L~~~~gkk-------~~~~~ 307 (467)
T COG2211 246 LLLFIAFNIRGSIMVYYVTYV--LGDP-----ELFAYLLLLASGAGLLIGLILWP----RLVKKFGKK-------KLFLI 307 (467)
T ss_pred HHHHHHHHHHhhhhheeEEEE--cCCh-----HHHHHHHHHHHHHHHHHHHHhHH----HHHHHhchH-------HHHHH
Confidence 222333333322 333321 1111 11122222333333333344443 334555444 44777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hhHHHHHHHH
Q 008177 397 GLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLE-------GMQSFLTAMT 469 (575)
Q Consensus 397 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~g~~ 469 (575)
+.++..++.+.+.+.. ..+.+.+++..++.+++.+...+..++.+.|.... +..|...|..
T Consensus 308 ~~~~~~i~~~~~~f~~------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~ 375 (467)
T COG2211 308 GLLLLAVGYLLLYFTP------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM 375 (467)
T ss_pred HHHHHHHHHHHHHhhc------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence 7888878777766652 23455556666888899999988888888776654 4568888888
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcccC
Q 008177 470 YCSYSFGFYLSSLLVSLVNKITSRT 494 (575)
Q Consensus 470 ~~~~~lg~~lg~~l~~~i~~~~~~~ 494 (575)
++..=+|.+++..+.+++....+..
T Consensus 376 tF~~K~g~ala~~~~g~~L~~~Gyv 400 (467)
T COG2211 376 TFFRKLGLALAGFIPGWILGAIGYV 400 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998877664
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=148.37 Aligned_cols=172 Identities=13% Similarity=0.160 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILL 86 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~ 86 (575)
.+...++..+.+|++..++|.|+++++|++..+.+++.....++..++.+++|+++||+ |||++++.+.+...++...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~ 333 (490)
T PRK10642 255 CIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIPA 333 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 33444556788999999999999989999999888888888899999999999999996 99999988876544433332
Q ss_pred -HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 87 -SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
....+ .+...+++++++.|++.+...+....++.|.+|++. |+++.++.+
T Consensus 334 ~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~---Rg~~~g~~~ 384 (490)
T PRK10642 334 FILINS--------------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI---RYSALAAAF 384 (490)
T ss_pred HHHHhC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc---chHHHHHHH
Confidence 22111 124556778888888777777777888899999555 999999855
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTHS-GMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
....+++.++|.+.+++.+.. +|+.++++..+..+++++..++
T Consensus 385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 556677788999999988754 4777766655555555554444
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-10 Score=116.59 Aligned_cols=379 Identities=13% Similarity=0.107 Sum_probs=218.8
Q ss_pred hhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-----chHHH-HHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 008177 30 FNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG-----SFWTM-LIFGFVELSGFILLSVQAHLPQLRPSPCNML 103 (575)
Q Consensus 30 ~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 103 (575)
..|++++..-.+.+++...+.+. .++..|+.||+. + ||..+ ..+.+++..+..+.+++.-+-.
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------- 75 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------- 75 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 35889988888888888766555 689999999997 7 66544 4555566666666666532110
Q ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008177 104 TDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQ 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 183 (575)
+.+.++ +.+.........++-.+.|+|.+.......++++|..|+++ |+++.++.+.+.-+|.+++..+.+.+.
T Consensus 76 --~~~~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~---R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 76 --ESGQQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER---RPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred --cccccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000111 22333334455556667899999999999999999999655 999999999999999999999999887
Q ss_pred hcccchh----HHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhh
Q 008177 184 THSGMDI----GFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNR 259 (575)
Q Consensus 184 ~~~g~~~----~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (575)
+.++-.- .-..+.+..++.++..+-..++..+..+..+
T Consensus 150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~-------------------------------------- 191 (403)
T PF03209_consen 150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE-------------------------------------- 191 (403)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC--------------------------------------
Confidence 7665322 2222222333333333332222111110000
Q ss_pred hhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeecc
Q 008177 260 VLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSA 339 (575)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (575)
+++..+.+..... ..+ .+-++++.+ +++....+++.-.-+ =++-...
T Consensus 192 -------------~~~~~f~~a~~~~-------------~~~--~~a~~f~~f--l~l~t~a~~~QD~iL---EPygg~V 238 (403)
T PF03209_consen 192 -------------RPRPPFREAWRQV-------------WAS--PQARRFFVF--LFLGTLAFFMQDVIL---EPYGGEV 238 (403)
T ss_pred -------------CCCccHHHHHHHH-------------HhC--CChhHHHHH--HHHHHHHHHhhHHHc---CCchhHH
Confidence 0000011000000 000 011222111 111222122111101 1111011
Q ss_pred ccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 340 MDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTA 418 (575)
Q Consensus 340 ~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 418 (575)
. |+.. ....++.....+.+++..+.+++.. +|. ++.+....|...+.+++.......
T Consensus 239 f------gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~------ 296 (403)
T PF03209_consen 239 F------GMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAG------ 296 (403)
T ss_pred c------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHH------
Confidence 1 2222 1334666666777777666665542 222 333445667777777765544432
Q ss_pred hccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCC
Q 008177 419 ALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSA 498 (575)
Q Consensus 419 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 498 (575)
...+.+.+.+..+++|++.+.......+.+.+..+++..|..+|.+...+.++..++..+.+.+.|....
T Consensus 297 -----~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~----- 366 (403)
T PF03209_consen 297 -----PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA----- 366 (403)
T ss_pred -----hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1224556677889999999999999999999999999999999999999999999999999988776543
Q ss_pred CCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 499 HGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLF 532 (575)
Q Consensus 499 ~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~ 532 (575)
+... -....|..+|.+=+...++++.+...
T Consensus 367 --~~~~--~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 367 --LFGN--SPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred --hccC--CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 01124445555555555555444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=141.13 Aligned_cols=177 Identities=16% Similarity=0.056 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.+|......++....+++...++|.|+++++|+|..++++..+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 467777777788888888899999999999999999999999999999999999999999996 9998877665544444
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..++.+..+ .+.....+.+++.|+...+..........|.+|++. |+++.+
T Consensus 338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~---~g~a~g 388 (467)
T PRK09556 338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA---IGVANG 388 (467)
T ss_pred HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh---HHHHHH
Confidence 333332211 113345566777775443333333456679999544 999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhh------------cccchhHHHHHHHHHHHHHHHHHHh
Q 008177 163 VAYFAFCM-GQLIALTLLVWVQT------------HSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 163 ~~~~~~~l-g~~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
+.+...++ |..++|.+.|++.+ ..||+..|++..+..+++.+..++.
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 99988886 77999999999998 5789999988877777765555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-10 Score=120.62 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCC
Q 008177 427 SIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDND 506 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 506 (575)
+.+...+..++.|+..+...+..-++..|+.|++..+...|++.+.+.....+||.+.+.+.+.++..
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~------------ 446 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ------------ 446 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------------
Confidence 33445556678899999999999999999999999999999999999999999999999998766531
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHh
Q 008177 507 LNKDRLDLFYWLLAALSLINFFNYLFW 533 (575)
Q Consensus 507 l~~~~~~~~f~i~~~~~~~~~~~~~~~ 533 (575)
...+..+..+.++++++.+.+
T Consensus 447 ------r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 447 ------RYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred ------hhHHHHHHHHHHHHHHHHhhc
Confidence 123455566666666655444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-12 Score=133.96 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.+..+...+.....++.+..++|.|+++++|+++.+.+++.+...+...++.+++|+++||+ |||+.+..+.....+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~ 296 (393)
T PRK15011 218 TLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFY 296 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444444455556667899999999999999999998887788888999999999996 99998887766555544
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
..+...++ ...+++.+++.+++.|...+....+..|.+|+ + |+++.++
T Consensus 297 ~~~~~~~~----------------------------~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~---~g~~~~~ 344 (393)
T PRK15011 297 AGMLMAHS----------------------------PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q---AGSATTL 344 (393)
T ss_pred HHHHHHhh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C---cchHHHH
Confidence 44433322 44456677777777676666677788888873 2 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++...++|..++|.++|++.++.||+..|++..+..+++++..++
T Consensus 345 ~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 345 YTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999888777776665554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=129.15 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=153.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchH-HHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFW-TMLIFGFVEL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~~~~ 80 (575)
|..+......++..........+.+.|+.+.+|.++.+.+++.+...++..++.++.|+++||+ |||+ .+..+.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 3456677777888888888999999999988899999999999999999999999999999997 9999 9999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+....++ ...+.+..++.|++.+...+...+++.|..|+++ |++.
T Consensus 254 i~~~~~~~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 302 (352)
T cd06174 254 LGLLLLALAPS----------------------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEA---RGTA 302 (352)
T ss_pred HHHHHHHHhcc----------------------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH---HHHH
Confidence 99888887543 5667888999999999999999999999999544 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
+++.+...++|..+++.+.+.+.+..+|+..|++.++..+++.+..
T Consensus 303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 303 SGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998999999999888777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=131.15 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=133.5
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAH 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~ 91 (575)
.+..++++.+..+++.|+.+ .|. .+.++..+.+.++..++.++.|+++||+ |||+.+..+.++..++..+..+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666777888888864 465 4556777788888999999999999996 9999999998888888877776543
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHH
Q 008177 92 LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMG 171 (575)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 171 (575)
...+++.+++.|++.+...+.......|..|++ .|+++.++++...++|
T Consensus 302 ----------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g 350 (399)
T PRK05122 302 ----------------------------PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ---NRGAALGAYSVFLDLS 350 (399)
T ss_pred ----------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHH
Confidence 445677788999999988888888888988844 4999999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 172 QLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 172 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
..+++.+.|++.++.||+..|++.++..+++++......+
T Consensus 351 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 351 LGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888777777666555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=120.48 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=114.0
Q ss_pred HHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 008177 25 LITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLT 104 (575)
Q Consensus 25 ~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 104 (575)
+..+.+.+.+++.++..++.+.|+.-..+.+.++|++.||.+|-|..-++-++...+|-++.+..--
T Consensus 66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi------------- 132 (459)
T KOG4686|consen 66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI------------- 132 (459)
T ss_pred hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence 5677788888888999999999999999999999999999889888777777777777776664321
Q ss_pred CCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 105 DTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 184 (575)
...++.+..+|++.|+|.-...++...+...+|+.+| .+.++|+......+|...-..+-+++.+
T Consensus 133 ------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE---Ln~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 133 ------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE---LNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred ------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc---ccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 2347889999999999998888999999999999666 9999999999999999888888888776
Q ss_pred ccc
Q 008177 185 HSG 187 (575)
Q Consensus 185 ~~g 187 (575)
..+
T Consensus 198 ~~~ 200 (459)
T KOG4686|consen 198 TMG 200 (459)
T ss_pred HHH
Confidence 544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=129.51 Aligned_cols=169 Identities=15% Similarity=0.010 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.+......++..+.........+.|. +++|.++.+.+++.+.+.++..+++++.|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 44444445555555555666677775 57899999999999999999999999999999996 99999999999888888
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++.+.++ .+...+....++.+++.|...+..+++..|.+|+++ |++..++
T Consensus 285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~ 335 (377)
T TIGR00890 285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN---SAANYGF 335 (377)
T ss_pred HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh---hhhHhHH
Confidence 87776532 112334456677888888888888899999999554 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGL 203 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 203 (575)
++...++|..++|.+.+.+.++.||++.|.+.++..++++
T Consensus 336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988877655543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=139.26 Aligned_cols=133 Identities=12% Similarity=-0.008 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHH
Q 008177 43 IVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALI 122 (575)
Q Consensus 43 i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (575)
......++..++.+++|+++||+ |||++++++.++.+++.++++++.+ ...
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s----------------------------~~~ 650 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS----------------------------ESA 650 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc----------------------------HHH
Confidence 34456678899999999999996 9999999999999999888887644 344
Q ss_pred HHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 123 LYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 123 l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
+++.+++.+++.++..+...++++|++|+ +.|++++++.+....+|+++||.+++++... +...+|++.++..+++
T Consensus 651 ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt---~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 651 MIALLCLFGGLSIAAWNALDVLTVELYPS---DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 66667777877777888899999999995 4499999999999999999999999988763 4667788777766666
Q ss_pred HHHHHH
Q 008177 203 LISLIF 208 (575)
Q Consensus 203 ~i~~~~ 208 (575)
.++..+
T Consensus 727 ~ll~~~ 732 (742)
T TIGR01299 727 GLLALK 732 (742)
T ss_pred HHHHHh
Confidence 555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=130.66 Aligned_cols=178 Identities=8% Similarity=-0.031 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCC--------hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFP--------LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFG 76 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 76 (575)
+..+...++..........+++.|+. +.|.+ .++.+.+.+...++..++.++.|+++||+ |||+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 34445555555555556677788876 45544 46778999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhh
Q 008177 77 FVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKK 156 (575)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 156 (575)
++..++..+.....+. ......+++.+++.|++.+...+....+++|++|+ +.
T Consensus 289 ~~~~v~~~l~~~~~~~------------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~---~~ 341 (418)
T TIGR00889 289 VAWALRFGFFAYGDPE------------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV---HI 341 (418)
T ss_pred HHHHHHHHHHHHcCcc------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HH
Confidence 9998887777663210 01245567788999999998889999999999994 44
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 157 LSTYFNVAY-FAFCMGQLIALTLLVWVQTH------SGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 157 r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
|++++++.+ ...++|..+||.++|++.++ +||+..|.+.++..+++.+.+.+..+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987 56789999999999999887 46999998887766655555544433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=127.89 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+......++.....+.....++.|+.+++|.++.+.+++.+.......++.+++|+++||+ |||+.+.++.+...+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 280 (375)
T TIGR00899 202 RLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYT 280 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHH
Confidence 3334444444444555667788999899999999999988887777888899999999997 999999888776665555
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+....++ .+.+.+.+++.|++.|...+....+..|..|+ + ++++.+++
T Consensus 281 ~~~~~~~----------------------------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~---~~~~~~~~ 328 (375)
T TIGR00899 281 GLAADNS----------------------------LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R---AGAATTLY 328 (375)
T ss_pred HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h---hhHHHHHH
Confidence 4444322 45566777888888888888888888898773 2 56999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
+...++|..++|.++|++.+..||+..|++.++..+++.+...
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988877766665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=130.90 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
++......++...+.+++..++|.|+++++|+|+.+.+++.+.+.++..++++++|+++||+ |||+.+.....+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHH
Confidence 44555556667777888999999999999999999999999999999999999999999996 99999988877766665
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.+....++ ...+.+..++.|++.+...+...++..|..|.+ +++..+.
T Consensus 286 ~~~~~~~~----------------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~----~~~~~g~ 333 (394)
T PRK03699 286 YLFVNTDD----------------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA----SPKLVNF 333 (394)
T ss_pred HHHHHcCC----------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CHHHHHH
Confidence 55554432 233445566788877777788777777776532 4566777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.....++|..++|.+.|++.+..|++..|+..++..+++++.+..
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 778889999999999999999999999998877766666544433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=128.16 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=142.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc-hHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFN-EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGS-FWTMLIFGFV 78 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~~ 78 (575)
||.+++....+++..+.++.+.+..-+|+++ +.+.+++..|+++++..++..+..+..|+.+-|. |+ |+.++.+.++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIVSFLI 111 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHHHHHH
Confidence 8999999999999999999999999999985 4788899999999999999999999999999996 76 8889999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 79 ELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.++|.++.......|+ ....+++++|++.|+|.|.. ...-+|+++....++ |.
T Consensus 112 ~~~g~llY~~l~~~~~-----------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d---R~ 164 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVPN-----------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED---RP 164 (488)
T ss_pred HHHHHHHHHHHHhccc-----------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc---hH
Confidence 9999999854444443 24677999999999987765 566789999888666 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh----c---------ccchhHHHHHHHHHHHHHHHHHHh
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQT----H---------SGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~----~---------~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
++++....+..+|..+||.+...+.. . .-+..+-|+.++..++..+...+.
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 99988777777888888877655432 1 013445566666555555444443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=127.16 Aligned_cols=178 Identities=17% Similarity=0.117 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cchHHHHHHHH-HH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYL-GSFWTMLIFGF-VE 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~~~~~~~~-~~ 79 (575)
|-+|.+....++..+.=|++..+.|.|++|+.|+|..++++..+.|=.+...++++.|++|||++ |||..+-+.+. ..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999987 88865544443 44
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
+++.+..-.+++ .+..+..+..+++|+..-+-.-.+.....|..| ++.-++
T Consensus 332 ~~~~~~~w~~~~--------------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~p---K~AaGt 382 (448)
T COG2271 332 TASLVLYWLAPN--------------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVP---KKAAGT 382 (448)
T ss_pred HHHHHHHHcCCC--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc---Hhhccc
Confidence 444444444332 246677777888888777777777788889999 556999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 160 YFNVAYFAFCM-GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 160 ~~~~~~~~~~l-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+.|+...+..+ |+..+....+++.+.+||...|.+..+..+++.+.+..
T Consensus 383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 383 ATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999988888 99999999999999999999998877766666555544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.1e-11 Score=125.54 Aligned_cols=173 Identities=16% Similarity=0.024 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
++......++.....++..++++.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ |||+.. .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 34445555666667777778888999888999999999999999999999999999999996 988654 4444444443
Q ss_pred HHH-HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 84 ILL-SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.+. .... +...+.+..++.|++.+...+...+.+.+..| ++ |+++.+
T Consensus 285 ~~l~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~---~~~~~g 332 (390)
T PRK03545 285 LLLLPAAN----------------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA---TDVAMA 332 (390)
T ss_pred HHHHHHhc----------------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc---HHHHHH
Confidence 333 2222 14556677778888888777777888888765 33 789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
++....++|..+||.++|++.++.|++..|++.+...+++++.+....
T Consensus 333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 998889999999999999999999999999998887777777665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-12 Score=111.80 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHH
Q 008177 44 VTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALIL 123 (575)
Q Consensus 44 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (575)
.+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++....+ .+.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~ 54 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSSN----------------------------ITVL 54 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcc----------------------------HHHH
Confidence 3456678889999999999996 9999999999998888888777543 5667
Q ss_pred HHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008177 124 YLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGL 203 (575)
Q Consensus 124 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 203 (575)
.+.+++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.+...++..
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEE---RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhh---hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999555 99999999999999999999999999988999999988777665555
Q ss_pred HHHHH
Q 008177 204 ISLIF 208 (575)
Q Consensus 204 i~~~~ 208 (575)
+...+
T Consensus 132 ~~~~~ 136 (141)
T TIGR00880 132 ILLAF 136 (141)
T ss_pred HHHhh
Confidence 54443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-11 Score=125.23 Aligned_cols=176 Identities=11% Similarity=-0.061 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
..+.+....++...+++++..++|.|+.+ +|++..+++.+.+.+.++..+++++.|+++||+ |||+.+..+..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 34555555666778888999999999975 899999999999999999999999999999996 9999999988877777
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+....+. . ...+ ..++.|++.+...+.......+.+++ ++.+++.++
T Consensus 284 ~~~~~~~~~--------------------------~-~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~--~~~~g~~~g 332 (393)
T PRK09705 284 FCGFIWLPL--------------------------Q-LPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ--PAIAGKLVA 332 (393)
T ss_pred HHHHHHccc--------------------------h-HHHH--HHHHHHHhccchHHHHHHHHHhhcCC--HHHHHHHHH
Confidence 665553221 0 1111 22456888888888877777787753 234899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcc
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
+.+...+++..++|.+.|++.++.| |+..|.+.++..++.++......+
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876 788888877766666555554444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-11 Score=126.07 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=131.1
Q ss_pred HHHHHHhhhhhhHHHHHHhhhccCCChh---hHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008177 11 QAFEMTAIAAVGNNLITYVFNEMHFPLS---KSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLS 87 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~yl~~~~~~s~~---~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~ 87 (575)
.++.......+.+.++.|+.+..+-... ..+.+.+...++..++.+..|+++||+ |||+.+..+..+..++.++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence 3444455556667788888764432221 245556666778888999999999996 999999999888777777666
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
+.++ .+.+++.+++.|++.+...+...+++.+..|+++ +++.+++++..
T Consensus 307 ~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~ 355 (408)
T PRK09874 307 FVQT----------------------------PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI---AGRIFSYNQSF 355 (408)
T ss_pred Hhcc----------------------------HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc---ceeeehHHHHH
Confidence 5433 4557788889999999999999999988888555 89999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008177 168 FCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
.++|..+||.++|++.++.||+..|++.++..+++.+..++.
T Consensus 356 ~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 356 RDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888777776655543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.2e-11 Score=126.14 Aligned_cols=159 Identities=14% Similarity=-0.014 Sum_probs=130.7
Q ss_pred hhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 008177 18 IAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRP 97 (575)
Q Consensus 18 ~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 97 (575)
.+++..++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++||. ++++.+..+..+..++.++..+.++
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~------ 311 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMPM------ 311 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccch------
Confidence 456777889999988999999999999999999999999999999995 8888888888888888777766433
Q ss_pred CCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHH
Q 008177 98 SPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALT 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 177 (575)
.....+..++.|++.+...+...+++.|..|+ +.|++++++++...++|..+||.
T Consensus 312 ----------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---~~~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 312 ----------------------WILAVLCLALFGYLSAISSLLQYTLLQTQTPD---EMLGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHhhhHhHHHH
Confidence 45566777788888887777778899999994 44999999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 178 LLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 178 ~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+.|++.+..|++..+...+...++..++...
T Consensus 367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 367 LLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887766554444333333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-11 Score=125.59 Aligned_cols=168 Identities=15% Similarity=0.007 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLS 87 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~ 87 (575)
....++.....+.+..++|.|++ +.|+++.+.+.+.+.+.++..++.++.|+++||+ |||+.+..+.+...++..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 303 (406)
T PRK11551 226 WISYFFTLIVLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALA 303 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777888898887 4799999999999999999999999999999996 999999887776666666555
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
..++ ...+.+..++.|++.++..+...++..|.+|+++ |++..++.+..
T Consensus 304 ~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~ 352 (406)
T PRK11551 304 AAPS----------------------------FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV---RGTGVGAAVAV 352 (406)
T ss_pred hcCc----------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh---hhhhhhHHHHh
Confidence 5332 3345556667788777778888899999999655 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 008177 168 FCMGQLIALTLLVWVQTHS-GMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 168 ~~lg~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
..+|..++|.+.|++.++. +|...++......+++.+..+.
T Consensus 353 ~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 353 GRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 4555666655555555444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=123.35 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=143.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|+++......++...+.+.+.++.+.|++ ++|.++.+++.+.+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 34566777777788888889999999997 5999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
...+.+++++ .+.+++...++|+..|...+....++.+. |+++ |+++.
T Consensus 283 ~~~~~~~~~~----------------------------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~---~~~~q 330 (382)
T TIGR00902 283 RWAIIGAIEA----------------------------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE---IAKLQ 330 (382)
T ss_pred HHHHHHhHhh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh---HHHHH
Confidence 9999888654 66688889999999999999999999987 7544 88888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008177 162 NVAY-FAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 162 ~~~~-~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~ 205 (575)
++++ ....+|..+++.++|++.++.|+ ..|++.+...+++++.
T Consensus 331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 331 ALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8876 46789999999999999999986 5566666655555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=130.17 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=128.8
Q ss_pred HHHHhhhhhhHHHHHHhhhcc---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008177 13 FEMTAIAAVGNNLITYVFNEM---HFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQ 89 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~yl~~~~---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~ 89 (575)
+....+......++.|+.+.+ +.+..+.+++.+...++..++.+++|+++||+ |||+.+..+.++..++..+.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 234 GVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc
Confidence 333334444455677766443 66778889999999999999999999999996 99999999999999988888876
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH-HHHHH
Q 008177 90 AHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV-AYFAF 168 (575)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 168 (575)
.+ .+.+++.+++.|++.+...+....++.|.+|++. +++..+. +++..
T Consensus 313 ~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~ 361 (420)
T PRK09528 313 TG----------------------------PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL---SATIYLVGFQFAK 361 (420)
T ss_pred cc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---eeeeeeehHHHHH
Confidence 44 4556777888998888877778889999998544 7777655 66778
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 169 CMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 169 ~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++|..++|.+.|++.+..||+..|.+.++..++..+..++
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877765555444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=125.06 Aligned_cols=174 Identities=12% Similarity=0.040 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLS 87 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~ 87 (575)
....++..+.+|+..++++.|+++++|++......+.....+...++.+++|+++||+ |||++++.+.++..++...+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999988766666666677788899999999996 999999888776555443333
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH-
Q 008177 88 VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF- 166 (575)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~- 166 (575)
..... ......+.+..++.+++.+...+...++++|.+|.+. |+++.++.+.
T Consensus 335 ~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~---r~tg~g~~~~~ 387 (438)
T PRK09952 335 MALEA------------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY---RYSGAGVGYQV 387 (438)
T ss_pred HHHHc------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch---hHHHHhHHHHH
Confidence 32110 0113333445566678878878888999999999544 9888888544
Q ss_pred HHHHHHHHHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHHHHHh
Q 008177 167 AFCMGQLIALTLLVWVQTHS--GMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
+..+|+.++|.+.+++.+.. +|+.++...++..+++.+..+..
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 45589999999999997743 48888887777777776665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=125.64 Aligned_cols=167 Identities=17% Similarity=0.056 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
++......++.....+...+++|.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+.....+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 56666677777888888899999999989999999999999999999999999999999996 99998876655444333
Q ss_pred -HHHH-HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 84 -ILLS-VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 84 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
.+.. ...+ .+...+.+..++.|++.+...+...+++.|.+|+++ |+++.
T Consensus 300 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~~~~~ 350 (394)
T TIGR00883 300 VPLLMALLDS--------------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---RYTGA 350 (394)
T ss_pred HHHHHHHhcC--------------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc---eeeEe
Confidence 2222 2111 124456667778888888888999999999999655 88888
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHH
Q 008177 162 NV-AYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMA 200 (575)
Q Consensus 162 ~~-~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~ 200 (575)
++ +.....+|..++|.++|++.++.| |+..++...+..+
T Consensus 351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 87 455567899999999999999888 8877766655433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=122.31 Aligned_cols=157 Identities=13% Similarity=0.176 Sum_probs=123.8
Q ss_pred HHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 13 FEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHL 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~ 92 (575)
+....+.....++|.|+++ .|.++.+++++.+.+.++..+++++.|+++||+ |||+++..+.++..++......
T Consensus 211 ~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~~---- 284 (381)
T PRK03633 211 ISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAMLS---- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHhh----
Confidence 3334445556778888874 699999999999999999999999999999997 9999998888877776654431
Q ss_pred CCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHH
Q 008177 93 PQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQ 172 (575)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 172 (575)
.......+++.|++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 ---------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ---------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE---LVAMNQALLLSYTVGS 334 (381)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH---HHHHHHHHHHHHHHHH
Confidence 1123445667777777778999999999988544 7777888788889999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008177 173 LIALTLLVWVQTHSGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 173 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~ 205 (575)
.+||.++|++.++.||++.|.+.+...++..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877766555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=127.75 Aligned_cols=177 Identities=16% Similarity=0.088 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cchHHH-HHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYL-GSFWTM-LIFGFVEL 80 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~~~-~~~~~~~~ 80 (575)
.+|......++.....|+...++|.|++++.|++..+++++...+.++..++.+++|+++||+. |||+.. .....+..
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 3566667777777888899999999999999999999999999999999999999999999951 344432 22233333
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.++..+... .+....++..++.|.+..........+..|.+|++. |+++
T Consensus 334 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~ 384 (452)
T PRK11273 334 IATIVYWLNPA--------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA---AGTA 384 (452)
T ss_pred HHHHHHHHhcc--------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh---hhhH
Confidence 33333322111 112233344444554333322333456679999555 9999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLI-ALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 161 ~~~~~~~~~lg~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.++.+...++|+.+ +|.+.|++.++.||+..|++.+...+++.+....
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99998888888654 7999999999999999998877766666555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=122.45 Aligned_cols=176 Identities=14% Similarity=0.026 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-HHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTML-IFGFVELS 81 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~~~~i 81 (575)
.++......++....+++...++|.|++ ++|++..+.+++.+...++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3456666677778888999999999986 5899999999999999999999999999999996 9988764 33333333
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+...+....... ..+.....+..++.|++.+...+. .+.+.|..| ++ |++++
T Consensus 301 ~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~---~g~~~ 352 (402)
T TIGR00897 301 FTLALYYIPQHF-----------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH---KGAAM 352 (402)
T ss_pred HHHHHHHHHHcc-----------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch---hHHHH
Confidence 333333221100 012444566777778877766543 456667544 33 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+...++|..++|.+++.+.+..||...|++.++..+++.+...+
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888776665554444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=125.05 Aligned_cols=176 Identities=15% Similarity=-0.007 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG--SFWTMLIFGFVELS 81 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~~~~i 81 (575)
++.+....++....++++..++|.|+.+++|++..++++..+.+.++..++.+++|+++||+.+ ||+......+...+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence 4555555666667777888899999988999999999999999999999999999999999622 22322222222222
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+......... .+.....+..+..|++............+|.+|+++ |+++.
T Consensus 325 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 375 (434)
T PRK11663 325 SVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA---AGAAT 375 (434)
T ss_pred HHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh---HHhHH
Confidence 2222111111 012222233333444332222233456789888444 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+...++|..++|.+.|++.++.||+..|+..++..+++.+....
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888776666554444
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=124.44 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH-H
Q 008177 8 LGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL-L 86 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~-~ 86 (575)
....++.....++...++|.|+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..+.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~ 322 (405)
T TIGR00891 244 VVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVF 322 (405)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHH
Confidence 3334445566667778899999999999999999999999999999999999999996 9999998887765333222 2
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
.... +...+.+..++.++..+...+..++++.|.+|+++ |++++++.+.
T Consensus 323 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~ 371 (405)
T TIGR00891 323 AIGA----------------------------NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ---RAAGLGFTYQ 371 (405)
T ss_pred HhCC----------------------------chHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch---hHHHhhHHHH
Confidence 2211 13445566667777777777888899999999655 9999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhHHHHH
Q 008177 167 AFCMGQLIALTLLVWVQTHSG-MDIGFGVS 195 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~ 195 (575)
..++|..++|.+.|++.++.| |+..+...
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 999999999999999999988 87766543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=121.99 Aligned_cols=176 Identities=13% Similarity=0.001 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-HHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWT-MLIFGFVELS 81 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~~~~i 81 (575)
.++......++.....+.+..+++.|+++++|.+..+.+++.+...++..++.+++|+++||+ |||+. +........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 456667777788888888999999999999999999999999999999999999999999996 99861 1111111112
Q ss_pred HHH---HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 82 GFI---LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 82 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
+.+ +.....+. ............+.+.+.+ ..+...++++|.+|+++ |+
T Consensus 295 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~g 346 (399)
T TIGR00893 295 AGLVLSLLMFATNY------------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI---AG 346 (399)
T ss_pred HHHHHHHHHHHhcc------------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH---HH
Confidence 111 11111100 0112222223333334434 78899999999999555 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHH
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~ 207 (575)
++.++.+...++|..++|.+.+++.+..| |+..|++.++..+++.+..+
T Consensus 347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888 99999888777666655443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=127.13 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=115.9
Q ss_pred hhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008177 20 AVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSP 99 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 99 (575)
....++|.|+++++|+++.+++++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++.....+
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999889999999999999999999999999999999996 9999998887766665544433211
Q ss_pred CCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 100 CNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
.+.+.+.+..++.+....+..+..++++.|.+|+++ |++.+++++...++|..+||.++
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~lgp~l~ 422 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ---RAAGLGFTYNVGALGGALAPILG 422 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH---hhcccchhhhhhhHHHHHHHHHH
Confidence 113333344444443333445677788999999554 99999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHH
Q 008177 180 VWVQTHSGMDIGFGVSAA 197 (575)
Q Consensus 180 ~~l~~~~g~~~~f~~~~~ 197 (575)
|++.++.||+..+...+.
T Consensus 423 g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 423 ALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHhccCChHHHHHHHHH
Confidence 999999999988765544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=123.19 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=130.5
Q ss_pred HHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 13 FEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHL 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~ 92 (575)
+....+..+..+.+.|+++ .|++ +.++....+.++..+++++.|++.||+ ||||.+..+..+..++..+..+.++
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~- 301 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAPT- 301 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHccc-
Confidence 3445555666777888864 5654 456666777888889999999999996 9999999999988888887776533
Q ss_pred CCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHH
Q 008177 93 PQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQ 172 (575)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 172 (575)
...+++..++.|++.+...+...+.+.|.+|++ +|+++.++++...++|.
T Consensus 302 ---------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 302 ---------------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ---VRGTALGGYAAFQDIAY 351 (392)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHH
Confidence 455677888899998888888888899999844 49999999999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 173 LIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 173 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.++|.+.+++.++.||+..|.+.+...+++.+....
T Consensus 352 ~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 352 GVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988777766665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=129.75 Aligned_cols=172 Identities=12% Similarity=0.029 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc-ccchHHHHHHH--HHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY-LGSFWTMLIFG--FVE 79 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~-~Grr~~~~~~~--~~~ 79 (575)
.++......++..+.+++...+++.|++ ++|.++.+++++.+...++..++++++|+++||. .++|+..+++. ++.
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 3555566667777888888899999986 5799999999999999999999999999999983 13444444333 333
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
.++.+++...++ .+.+++.+++.|++.+...+...+++.|.+|+++ +++
T Consensus 321 ~l~~ll~~~~~~----------------------------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~---~g~ 369 (455)
T TIGR00892 321 GLTHLLCALAGD----------------------------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR---FSS 369 (455)
T ss_pred HHHHHHHHHhch----------------------------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH---Hhh
Confidence 344444444332 5567788999999999999999999999999554 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTHS-GMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~i~~ 206 (575)
.+++++...++|..+||.++|++.+.. +|++.|++.++..+++.+..
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999999999999998877 59999999887666665543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=116.91 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=108.0
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
.....|..+.+| +...+-|..-+|.+.+....+++-|+.||+ |-|.+++++..+..+|..+=..+.. |.+-
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~------ 135 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVP------ 135 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cccc------
Confidence 345566677778 777888999999999999999999999997 9999999999999999988777643 3110
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
+.....+.+.+..+.+...-.+...-+-+-+-||+++| |..+..+-.++..+|.++|.++...+
T Consensus 136 -------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q---ra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 136 -------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ---RAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred -------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch---hhhhhhHHHhcchHHHHHHhhcccee
Confidence 11123467788888888877777777778888999766 99999888888888988888887666
Q ss_pred hhc
Q 008177 183 QTH 185 (575)
Q Consensus 183 ~~~ 185 (575)
..+
T Consensus 200 V~~ 202 (480)
T KOG2563|consen 200 VPS 202 (480)
T ss_pred cCC
Confidence 543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=123.22 Aligned_cols=167 Identities=15% Similarity=0.072 Sum_probs=119.3
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 23 NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 23 ~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
....+++.+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.+++++......
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 374 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-------- 374 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--------
Confidence 3334455567899998899999999999999999999999996 9999999998888888777764211000
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
. +..+..+...+....+..+....+..+....+..|.+|+++ |+++.++.+...++|.+++|.+.+++
T Consensus 375 ---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 375 ---T------GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL---RPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred ---C------CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000122222222222222223334667778899999554 99999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 183 QTHSGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 183 ~~~~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
.++.+|++.|++.++..+++.+...+..
T Consensus 443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~~ 470 (481)
T TIGR00879 443 LESIGVGGVFIFFGGLNVLGLIFVYFFL 470 (481)
T ss_pred HHhcCccceehhHHHHHHHHHHHHheec
Confidence 9989999999888777666666555433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=108.34 Aligned_cols=81 Identities=14% Similarity=0.014 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc------------
Q 008177 118 YKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH------------ 185 (575)
Q Consensus 118 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~------------ 185 (575)
.++..++++.++.|.|.+...+..+++++++.++++ +++.+++.+....+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~---~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET---AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch---HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 347889999999999999999999999999999655 88899999999999999999999987732
Q ss_pred ----ccchhHHHHHHHHHHH
Q 008177 186 ----SGMDIGFGVSAAAMAV 201 (575)
Q Consensus 186 ----~g~~~~f~~~~~~~~i 201 (575)
..|+++|++.+...++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 4689998855554333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-09 Score=111.04 Aligned_cols=356 Identities=14% Similarity=0.082 Sum_probs=208.4
Q ss_pred HHHHHHHHHHhhhhhh---HHHHHHhhhccCCChhh-HHHHHHHH----HHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVG---NNLITYVFNEMHFPLSK-SANIVTNF----IGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV 78 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~---~~~~~yl~~~~~~s~~~-~~~i~~~~----~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~ 78 (575)
+....+++.++.+... .....+.....+.+... .+...... .+...+.++..|.++||| |||..+.+..+.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence 4445555555555554 55666666555544332 23333333 567889999999999997 999999999998
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHc--ccccccchhhhhcccCCccchhh
Q 008177 79 ELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALG--SGCLKPNIISHGADQFKKQESKK 156 (575)
Q Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g--~g~~~~~~~~~~~~~~~~~~~~~ 156 (575)
..+..+...+.. ++.+. +.++. .++......++++|...+++
T Consensus 102 ~~l~~~~~~~~~-----------------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~--- 145 (463)
T KOG2816|consen 102 TILPALCLLFQG-----------------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE--- 145 (463)
T ss_pred HHHhHHHHHHHH-----------------------------HHHhh----hcccccchhhhhhhhhhheeeccchhH---
Confidence 888888777742 22222 43432 35566788899999999665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCC-chhhHHHHHHHHHh
Q 008177 157 LSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGS-IFTPIAQVFVAAIT 235 (575)
Q Consensus 157 r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 235 (575)
|...+++...+...+..++|.+++++....|....|.++.+..++..+...+..|+....+.+.. +.
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~------------ 213 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL------------ 213 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc------------
Confidence 99999999999999999999999999999999999999999888887776665554322221110 00
Q ss_pred hhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHH
Q 008177 236 KRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPI 315 (575)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (575)
...+.......+. . ..++...+ ....|..+...
T Consensus 214 --------~~~~~~~~~~~~~-------------------~----------------~~~~~~~~--~~~~r~~l~l~-- 246 (463)
T KOG2816|consen 214 --------RELTPGSLDSSHV-------------------A----------------DAFQSLTK--VGPDRLLLLLL-- 246 (463)
T ss_pred --------cccCCCcccchhh-------------------h----------------hhhhhhcc--cCCCccchHHH--
Confidence 0000000000000 0 00000000 00111111111
Q ss_pred HHHHHHHHHHHhhccceeeeeeccccccCCCcccc-Chhhhc----cchhHHHHHHHHhhhHHHhhcccccccCCCCCCc
Q 008177 316 FACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQ----AIPYILLIFVVPLYEIVFVPVASKFTKKDSGISP 390 (575)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~ 390 (575)
+...........+..... . .+....+ +++. ..+.+. ....+..++..|... +.++.|
T Consensus 247 l~~~~~~~~~~~~~~~~~-~--~yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~-------~~l~~~------ 308 (463)
T KOG2816|consen 247 LVAFLSSLPEAGGASDVL-L--LYLKAKF--GWNKKEFSDLLSLVSILGIISQLLLLPLLS-------SILGEK------ 308 (463)
T ss_pred HHHHHHHHHHhcCceeEE-E--EEEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh------
Confidence 111111111111111011 1 1112111 2221 112122 222233333333332 222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 008177 391 LQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTY 470 (575)
Q Consensus 391 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 470 (575)
..+..|++.-.+..+++++.. ..|.+. ..........+..|...+++...+.++.+|+.+++..
T Consensus 309 -~~i~lGl~~~~~~~~~~af~~--------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is 372 (463)
T KOG2816|consen 309 -RLISLGLLSEFLQLLLFAFAT--------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS 372 (463)
T ss_pred -hHhhHHHHHHHHHHHHHHHhc--------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence 257888888888888888763 333333 3344555666778888999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhcc
Q 008177 471 CSYSFGFYLSSLLVSLVNKITS 492 (575)
Q Consensus 471 ~~~~lg~~lg~~l~~~i~~~~~ 492 (575)
....+.+.+++.+.+.+...+.
T Consensus 373 ~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred HHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999887765443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=119.97 Aligned_cols=203 Identities=20% Similarity=0.208 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++.++....+......++++..++-+.+.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-++.+++++|
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLG 175 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHH
Confidence 345566666666666778999999999999999999999999999999999999999999995 6667888889999999
Q ss_pred HHHHHHhhccCCCCCCCCCCC-----------------------C--CCCCCCccc---cccchhHHHHHHHHHHHHHcc
Q 008177 83 FILLSVQAHLPQLRPSPCNML-----------------------T--DTDGTQNCQ---EAKGYKALILYLALYLVALGS 134 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-----------------------~--~~~~~~~~~---~~~~~~~~~l~~~~~l~g~g~ 134 (575)
.+++++= ++..+|-++. . --+..++|. +.+..-+.+++++.++.|+|.
T Consensus 176 sll~alP----Hf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~ 251 (735)
T KOG3626|consen 176 SLLFALP----HFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA 251 (735)
T ss_pred HHHHhCh----HHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence 9998863 2222111100 0 011223332 223335668889999999999
Q ss_pred cccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc------------------c-cchhHHHHH
Q 008177 135 GCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH------------------S-GMDIGFGVS 195 (575)
Q Consensus 135 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~------------------~-g~~~~f~~~ 195 (575)
....+...+|+=|...+++ -..++++.+.+..+|.++|.++++++... . .|+..|.+.
T Consensus 252 Tpi~tlGisYiDDnvk~~~---SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 252 TPIFTLGISYIDDNVKKKN---SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred CCCccCCCccccccccccC---CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999999998554 88999999999999999999999986521 1 377788888
Q ss_pred HHHHHHHHHHHHHhccee
Q 008177 196 AAAMAVGLISLIFGIFVY 213 (575)
Q Consensus 196 ~~~~~i~~i~~~~~~~~~ 213 (575)
+.+.++..+.++++.+..
T Consensus 329 g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 877777766666655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-10 Score=121.38 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHH-HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVT-NFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~-~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.|......++.....+....+.++|+.+++|+++.+.+++.. ...++..++.+++|+++||+ |||+.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 444555555666666777788889988889999999999975 45678999999999999996 9999888776655554
Q ss_pred HHHHHH-hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 83 FILLSV-QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
..+... +.. ..+...+.+..++..+..|...+...++..+..+++. +++.+
T Consensus 303 ~l~~~~l~~~-------------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~---~~t~~ 354 (491)
T PRK11010 303 NAGYWLLSIT-------------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF---SATQF 354 (491)
T ss_pred HHHHHHHHhc-------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---cHHHH
Confidence 433322 111 0113334444555454445555666788888888544 78889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
++.+...++|..+++.+.|++.+..||+..|.+.++..+++++.....++
T Consensus 355 gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 355 ALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998999999989999999999999999999888887777776665543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-09 Score=111.88 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=121.8
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc--cc--chHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008177 24 NLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY--LG--SFWTMLIFGFVELSGFILLSVQAHLPQLRPSP 99 (575)
Q Consensus 24 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~--~G--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 99 (575)
....|+++++|+++.+.+.+.+...+.-.+- ++.|.++|.+ .| ||+-++++.++..++...++..+..
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 3456788999999999999888877766655 6789999996 23 5556666666666656656553220
Q ss_pred CCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 100 CNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
..+.....+..++..+|........-+++.|....++.. ++...+..+....+|.+++..++
T Consensus 83 -----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~ 144 (433)
T PF03092_consen 83 -----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLS 144 (433)
T ss_pred -----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhh
Confidence 112344556667788888999999999999998766544 88889998999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 180 ~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
|.+.+..+++..|.+.+...++..+..++..+
T Consensus 145 G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 145 GPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999999888766666555544444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-09 Score=107.17 Aligned_cols=345 Identities=14% Similarity=0.059 Sum_probs=187.4
Q ss_pred hhhHHHHHHhhhccCC---Chhh----HHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH-HHHHHHHHHHHHhhc
Q 008177 20 AVGNNLITYVFNEMHF---PLSK----SANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFG-FVELSGFILLSVQAH 91 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~---s~~~----~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~-~~~~i~~~~~~~~~~ 91 (575)
.+..++|+|+++..+- ++.+ .+...++..+..++..|+-|.++|+. |+||-.+..+ .+..+..+++.++++
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 4567789999876654 4433 33455566778888999999999996 8776555444 455666666666532
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHH
Q 008177 92 LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMG 171 (575)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg 171 (575)
+.++....+...+..++..+..+...+++.+..++++ .++.-++-+-...+|
T Consensus 112 -------------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~---~~riS~lg~~~gylg 163 (438)
T COG2270 112 -------------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN---MGRISGLGWALGYLG 163 (438)
T ss_pred -------------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc---cCccccccccccccc
Confidence 2346666677778889999999999999999998665 444444444455666
Q ss_pred HHHHHHHHHH---Hh---------------hcccchhHHHHHHHHHHHHHHHHHHhcceeeecC-CCCCchhhHHHHHHH
Q 008177 172 QLIALTLLVW---VQ---------------THSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKS-PRGSIFTPIAQVFVA 232 (575)
Q Consensus 172 ~~~~~~~~~~---l~---------------~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 232 (575)
..+..++.-. .. +...-|..+.++++-.++..+=+++..++..+.. +..+.+..-.+.+..
T Consensus 164 s~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~ 243 (438)
T COG2270 164 SVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKS 243 (438)
T ss_pred chHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHH
Confidence 6655544311 11 1223455555555544444333333333221111 110000000000000
Q ss_pred HHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhH
Q 008177 233 AITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSV 312 (575)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (575)
.++ +...++.+..+
T Consensus 244 t~k------------------------------------------------------------------~i~~~~~i~~F 257 (438)
T COG2270 244 TFK------------------------------------------------------------------EIRGRKNLVLF 257 (438)
T ss_pred HHH------------------------------------------------------------------HHhcccchHHH
Confidence 000 00011111111
Q ss_pred HHH-HHHHHHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCc
Q 008177 313 VPI-FACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISP 390 (575)
Q Consensus 313 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~ 390 (575)
+.. ++..-.....+... +.+-.. +. |++. ....+.....+..++++.+.+++- +|++.|
T Consensus 258 LiA~~~~~DGv~til~~~-~~fg~~----~~----gls~~~lll~g~~~~vvA~lg~ii~g~Ld----~rfg~k------ 318 (438)
T COG2270 258 LIARFFYIDGVNTILAMG-GVFGAA----DL----GLSSTELLLIGIALSVVAALGAIIAGFLD----ERFGSK------ 318 (438)
T ss_pred HHHHHHHHhhHHHHHHHH-HHHHHH----Hc----CccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCc------
Confidence 110 00000000110000 001000 00 1111 112233333344444454444433 555433
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 008177 391 LQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTY 470 (575)
Q Consensus 391 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 470 (575)
+.+..++++..+..+...... .. ....+.-++.|+..+......-+|..+.+|++..++..|+++
T Consensus 319 -~vl~~~lvi~~~~~~~~~~~~-------------~~-~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglya 383 (438)
T COG2270 319 -PVLMIGLVILSIAALYLIFLE-------------GE-LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYA 383 (438)
T ss_pred -eeehHHHHHHHHHHHHHHHcc-------------cc-HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhh
Confidence 335666666655544433332 11 122334467788888888889999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhhccc
Q 008177 471 CSYSFGFYLSSLLVSLVNKITSR 493 (575)
Q Consensus 471 ~~~~lg~~lg~~l~~~i~~~~~~ 493 (575)
..+..+..+||.+++.+.+.++.
T Consensus 384 ltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887665
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-12 Score=140.20 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+..+....+......++.....+-+.++++++.+++|++.+.+-++..+..++..++++|. .|-|.+-++.++.++|.+
T Consensus 5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHH
Confidence 3333444444488888889999999999999999999999999999999999999999994 666788888889999999
Q ss_pred HHHHhhccCCCCCCCCCCCC----------------------CCCCCCcc----ccccchhHHHHHHHHHHHHHcccccc
Q 008177 85 LLSVQAHLPQLRPSPCNMLT----------------------DTDGTQNC----QEAKGYKALILYLALYLVALGSGCLK 138 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~----~~~~~~~~~~l~~~~~l~g~g~g~~~ 138 (575)
++++ |++..++=+... ..+..+.| ++.....+.+++++.++.|+|.....
T Consensus 84 l~~l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~ 159 (539)
T PF03137_consen 84 LFAL----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLY 159 (539)
T ss_dssp ------------------------------------------------------------------------SSS-----
T ss_pred HHhc----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCc
Confidence 9885 444433210000 00011111 22223346788899999999999999
Q ss_pred cchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------c-cchhHHHHHH
Q 008177 139 PNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH---------------------S-GMDIGFGVSA 196 (575)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---------------------~-g~~~~f~~~~ 196 (575)
+...+|+=|..+++. -+.++|+.+.+..+|.++|..+++.+... . .|+..|.+.+
T Consensus 160 tLG~tYiDDnv~~~~---splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g 236 (539)
T PF03137_consen 160 TLGITYIDDNVSKKN---SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICG 236 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeecccccccc---CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 999999999999554 88999999999999999999998865421 1 3777787777
Q ss_pred HHHHHHHHHHHHhcceee
Q 008177 197 AAMAVGLISLIFGIFVYR 214 (575)
Q Consensus 197 ~~~~i~~i~~~~~~~~~~ 214 (575)
+..++..+-++++.++.+
T Consensus 237 ~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 237 ILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHcCCccCC
Confidence 766655555555444443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-10 Score=118.92 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=109.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH-HHHH
Q 008177 10 LQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI-LLSV 88 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~-~~~~ 88 (575)
..++....++++..++|.|+++.+|++..+.+++...+.++..++.+++|+++||+ |||+.++.+..+..+... ....
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~ 324 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSW 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788889999999988999999999998888899999999999999996 999998876554433221 1111
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHH
Q 008177 89 QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAF 168 (575)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 168 (575)
..+-+ +.....+..++.+++.+...+...++..|.+|++. |++++++.+...
T Consensus 325 ~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~---rg~~~g~~~~~~ 376 (434)
T PRK15075 325 LVAAP-------------------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV---RTAGFSLAYSLA 376 (434)
T ss_pred HHcCC-------------------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc---cchheeHHHHHH
Confidence 11101 12223334455566666666777788999999655 999999854444
Q ss_pred H-HHHHHHHHHHHHHhhcccch
Q 008177 169 C-MGQLIALTLLVWVQTHSGMD 189 (575)
Q Consensus 169 ~-lg~~~~~~~~~~l~~~~g~~ 189 (575)
+ +++.++|.+.+++.++.|++
T Consensus 377 ~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 377 TAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHhhhHHHHHHHHHHhcCCc
Confidence 4 45778999999999988864
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-09 Score=111.65 Aligned_cols=177 Identities=16% Similarity=0.107 Sum_probs=145.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+.++..+...++...+.|+.++++-+++++..|+|.+.++++.-.|.++..++..++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999999999999999999999 899999988888888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
....+.+..+ +.....+..++.|+..+........-+++..| +.++.+.
T Consensus 289 ~~l~l~~~~~---------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p----~~~~~a~ 337 (394)
T COG2814 289 ALLALTFTGA---------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP----DAADLAG 337 (394)
T ss_pred HHHHHHHhcc---------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC----CchHHHH
Confidence 8777776543 13344455555666655555555555555322 3378999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
+++..+.|+|..+|..++|.+.+++|+....+.+++..+++++..+...+
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988888777665443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=117.04 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=109.8
Q ss_pred HHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH-hhc
Q 008177 13 FEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSV-QAH 91 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~-~~~ 91 (575)
+....+|++..++|.|+.+++|++..+.++..+...+...++.++.|+++||+ |||+.++++.++..+....... ..+
T Consensus 254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~ 332 (432)
T PRK10406 254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQN 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678899999999999989999999999988888888888999999999996 9999887766654333322211 111
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHH-
Q 008177 92 LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCM- 170 (575)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l- 170 (575)
. .+....+....+...+.+...+....+.+|.+|++. |+++.++.+...++
T Consensus 333 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~---r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 333 V-------------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV---RALGVGLSYAVANAL 384 (432)
T ss_pred C-------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc---cchhhhHHHHHHHHH
Confidence 0 001111111122222333334556788999999555 99999997766554
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 171 GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 171 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++...|.+.+.+.....|...++..++..+++++..++
T Consensus 385 ~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457887776644333666666665555555555444
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=120.44 Aligned_cols=178 Identities=17% Similarity=0.048 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.+|......++.....|++..++|.|+++..|+++.+++++...+.++..++.+++|+++||+ |+++....+.....+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 355666666777778889999999999998999999999999999999999999999999996 7654323333222221
Q ss_pred ---HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 83 ---FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
..++..... .+.....+..++.|++..+..........|.+|+++ |++
T Consensus 331 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~ 381 (438)
T TIGR00712 331 TIAVIVYWMNPA--------------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGT 381 (438)
T ss_pred HHHHHHHHhcCC--------------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh---eee
Confidence 111111110 012223334444554433322233346778889544 999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 160 YFNVAYFAFCMG-QLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 160 ~~~~~~~~~~lg-~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
+.++.+...++| .+++|.+.|.+.++.||+..|++.+...+++.+..++..
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877 468999999999999999998877766555555554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=114.23 Aligned_cols=168 Identities=14% Similarity=-0.014 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......++....+.+..+.++.|+. +.|.++.+.+.+.+...++..+..++.|++.||+ |+|+.+..+.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 4555666666667777778888899995 5899999999999988889999999999999997 9999999999988888
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+.+.+++ .+.+++..++.|++.+...+....++.+. ++++ ++++.+
T Consensus 284 ~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~---~~~~~~ 331 (382)
T PRK11128 284 WGLMGSTTA----------------------------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE---VIRLQA 331 (382)
T ss_pred HHHHHhhhh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh---hHHHHH
Confidence 877776543 56677888899999888888888888886 4322 678888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008177 163 VAY-FAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 163 ~~~-~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~ 205 (575)
++. ...++|..+||.++|.+.+..|+. .|+..++..++++++
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence 765 556788899999999999998874 566655555544443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=116.20 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=146.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch--HHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSF--WTMLIFGFVE 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~~~ 79 (575)
|.+..-+...++.+-+...+......|.++++|++..+...+.-...+...++++++|++.||+ |.| +++++++++.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW 359 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence 3455566667777888889999999999999999999999999999999999999999999996 999 8888888776
Q ss_pred HHHHHHHHH--hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 80 LSGFILLSV--QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 80 ~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
.+..+.-.+ ..+... -.+.+.+++.-++.|+..|..++..-++.+|+.|+++ .
T Consensus 360 ~~i~~~g~~G~~~~~~g----------------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---e 414 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSFFG----------------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---E 414 (477)
T ss_pred HHHHHHHHHHhhhcccC----------------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch---h
Confidence 433332222 111000 1224557888889999999999999999999999655 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHH
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+..||++.+..-..+.+||.+.|.+.+..| .|+.+....++.+++++++..
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998876 888888777777777776654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=117.82 Aligned_cols=157 Identities=8% Similarity=-0.051 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++..+...++..+++.......|.|++..+|.++.+++++...+.++..++.++.|+++||+ |||+++..+..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 345556666677777666666788888878999999999999999899999999999999997 9999999998888877
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..++.+... ..+...+.+..++.|++.+...+....+..+..|+++ ++.+.+
T Consensus 341 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~~ 392 (471)
T PRK10504 341 SLLFMLVAL-------------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL---ASSGNS 392 (471)
T ss_pred HHHHHhccc-------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh---ccchHH
Confidence 776665321 0113334455667788888888888899999999554 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
++++...+|..+|+.++|.+.+..|+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988766555
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=112.86 Aligned_cols=171 Identities=11% Similarity=-0.065 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
++......++.....++.....|.|+.+++|.++.+.++......++..++.++.|+++||+ |+|+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444444555566666677788898889999999999988888888899999999999997 99999999988888888
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.+..+....+ ..+...+.+..++.|+|.+...+......... ++++ |++..++
T Consensus 296 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~---~g~~~~~ 348 (406)
T PRK15402 296 LLAALATVIS-----------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS---KGTVSAA 348 (406)
T ss_pred HHHHHHHHcc-----------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc---ccHHHHH
Confidence 8777643111 11244466777888888888776665554433 3233 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
+++...+|..+|+.+.+++.+..++....+..++..++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999988877766555544443333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=113.38 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHHhhhhhh-HHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVG-NNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
.++......++.....++.. ...|.|.++.+|.++.+.+++.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence 34455555566666666666 7778888777999999999999999999999999999999996 999999888777777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+..+.++ +.+.+.+..++.|++.+...+...+++.|..|+++ |+++.
T Consensus 290 ~~~~~~~~~~---------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~ 339 (365)
T TIGR00900 290 AILVVGLTPP---------------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL---LGRVF 339 (365)
T ss_pred HHHHHHhhch---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHHH
Confidence 7766665421 14557778889999999999999999999999544 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSG 187 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g 187 (575)
++++...++|..++|.++|++.+..|
T Consensus 340 ~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 340 GAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999987654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=110.54 Aligned_cols=183 Identities=14% Similarity=0.021 Sum_probs=139.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
++.|.+....+..-=++-++...+|.|+++++++++.+++.+...+.+...+.++.+|+||||+ |.+|+++......++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 4678888888877778888999999999999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+.+...+.. ....+...+...-+..++..|.-+.....++...+|+ +-+...
T Consensus 297 ~~~~l~~~~~~~---------------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~----~~G~v~ 351 (417)
T COG2223 297 AAALLSLFLTGF---------------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK----ETGAVT 351 (417)
T ss_pred HHHHHHcccccc---------------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh----hhhHHH
Confidence 988888753200 0011122233333333444444444445666666653 268889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
++.....++|+..-|...+...+..| ++..|++.....+++........
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999989988888888777 88888888777777766655543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=115.65 Aligned_cols=163 Identities=11% Similarity=0.012 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhh-ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-HHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFN-EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWT-MLIFGFVELS 81 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~~~~i 81 (575)
+|......++....++++..++|.|+++ ..|+++.+++++.....++..++.+++|+++||+ |||+. +....++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~ 322 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAA 322 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHH
Confidence 4555666677788889999999999986 3578889999999999999999999999999996 97775 3444444444
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+ ....+ . ....+.+..+.++|.....+.......|.+|+++ |++++
T Consensus 323 ~~~~-~~~~~-------------------------~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~a~ 371 (412)
T TIGR02332 323 GWLL-ASATD-------------------------H--NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA---RAIAI 371 (412)
T ss_pred HHHH-HHhcC-------------------------C--HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH---HHHHH
Confidence 3322 22111 0 1111112222233333333444455567788444 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAA 198 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~ 198 (575)
++.+...++|+.++|.+.+.+.+..| |++.|++.++.
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 99999999999999999999998775 99998876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=116.77 Aligned_cols=173 Identities=11% Similarity=0.099 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchH-------HHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFW-------TMLIFG 76 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-------~~~~~~ 76 (575)
+|.+....++.....+++.+++|.|+.+++|++..+++.+.+.+.++..++++++|+++||+ |||+ .+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444444455566778899999989999999999999999999999999999999996 8762 222222
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhh
Q 008177 77 FVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKK 156 (575)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 156 (575)
++..++..+.+... +.....+..++.+++.+...+...++..+..| +.
T Consensus 333 ~l~~i~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~ 380 (476)
T PLN00028 333 TLGGVFCIWLGRAN----------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR----RS 380 (476)
T ss_pred HHHHHHHHHhcccc----------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh----hh
Confidence 22222222222221 12333444455555554444555566666544 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 157 LSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 157 r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
++...++.+.+.++|+.+++.+.+ .....+|+..|++.++..+++.+..++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 889999877777777777766543 22345699999998887777766665543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=116.33 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++..+...++...+.+......+.|.+..++ ++.+.+++.+...++..++.+++|+++||+ |||+++..+.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45556666777777777666666666666666 566778888888899999999999999997 9999999999888888
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhhh
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKLS 158 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r~ 158 (575)
.++..+..+ +...+++..++.|++.+...+...++++|..+.++ .+.++
T Consensus 301 ~~~~~~~~~---------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAGS---------------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcch---------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 777665321 13445667778899999989999999999877433 34478
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMD 189 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~ 189 (575)
.+++++++...+|..+++.+.|++.+..||+
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.1e-09 Score=110.83 Aligned_cols=176 Identities=16% Similarity=0.057 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIG-TVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
.++..+...++...+......+.+.|+.+ .|+++++++++...... ...++.+++|++.||+ |+|+.+..+.++..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34555666677777777788888899975 79999999999888764 6667789999999996 999999887776534
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
.........+... ......++....+.+++.|...+...+...+..++ ++.+++.+
T Consensus 287 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~g~~~ 342 (390)
T TIGR02718 287 LALLWFAQAAFWL----------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD--GDQAGTDV 342 (390)
T ss_pred HHHHHHHHHHccc----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccchHHHH
Confidence 3332222111000 01122334444455666777777777777776664 13389999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
++.+...++|..++|.++|++.+..||+..|.+.++..+++.+
T Consensus 343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-09 Score=110.01 Aligned_cols=173 Identities=14% Similarity=0.081 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.+..+...++.....+.+..++++|+.+.+|+++.+.+++.+.+.++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34444444444455556667778888888999999999999999999999999999999996 99999999988888887
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++.....+ +.+...+..++.+++.++..+.......+..++ .+.++.. .
T Consensus 280 ~~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~--~ 328 (382)
T PRK10091 280 LMLFFFGG---------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKG--GELLGAA--G 328 (382)
T ss_pred HHHHHHHh---------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc--chHHHHH--H
Confidence 66554221 123344444455555544444333333333332 1224433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTH-SGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+...++|..+||.++|++.+. .+|+..+.+.++..++.......
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999885 68999999887765555444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=103.41 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=133.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH-HHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFG-FVEL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~-~~~~ 80 (575)
..+|.+.++.++...+.+-....-+.+.++.+|+|+.+++.+.+.......+.+|+.|.++||+ ||+-....+. +...
T Consensus 264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTL 342 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHH
Confidence 3578888999998888888888889999999999999999999999999999999999999997 9986655544 4566
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
.+-.++.+.. +.-+.+..+.|+..........+.++...|+++ .+++
T Consensus 343 ~~H~~l~Ft~------------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q---LGTa 389 (459)
T KOG4686|consen 343 LGHSGLFFTF------------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ---LGTA 389 (459)
T ss_pred HHhhhHHhhh------------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---hcch
Confidence 6677777652 223566677888887777778899999999777 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSG---MDIGFGVSAA 197 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g---~~~~f~~~~~ 197 (575)
++..+...|+|-.+.|+++|.+.++.| |--.|++...
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 999999999999999999999998765 4344555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-09 Score=111.51 Aligned_cols=147 Identities=15% Similarity=0.034 Sum_probs=108.5
Q ss_pred HhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 008177 16 TAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQL 95 (575)
Q Consensus 16 ~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 95 (575)
...+++..++|.|+++ .|.++.+.+.+.+.+.++..++.+++|+++||+ |||+.+..+.++..++..+.....+
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 318 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ---- 318 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 3444567788988875 699999999999999999999999999999996 9999998888776665554443221
Q ss_pred CCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHH
Q 008177 96 RPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIA 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 175 (575)
.....+.+..+..+.+..+..+..+.++.|.+|++ .|+++.++.+...++|..++
T Consensus 319 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 319 ----------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE---VRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred ----------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH---HHhhhhhHHHHHHhHHHHHH
Confidence 01121222222233333344566778889999944 49999999999999999999
Q ss_pred HHHHHHHhhcccchhHHH
Q 008177 176 LTLLVWVQTHSGMDIGFG 193 (575)
Q Consensus 176 ~~~~~~l~~~~g~~~~f~ 193 (575)
|.+.+++.++.|+....+
T Consensus 374 p~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 374 SMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 999999999888665433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=111.76 Aligned_cols=171 Identities=13% Similarity=0.008 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhcc---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEM---HFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
++......++....+.......+.|+.+.+ +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++..
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence 344444444444444455566788887655 56667788888888888899999999999996 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+.+.+.+ .+.+++.+++.|++.+........+..+..++ +.+++.
T Consensus 296 l~~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~~~at~ 344 (396)
T TIGR00882 296 VRIIGSSFATT----------------------------ALEVVILKMLHAFEVPFLLVGCFKYITSQFDV---RLSATI 344 (396)
T ss_pred HHHHHHHhcCC----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---ceEEEe
Confidence 88877666543 44567778888888766555555566666663 336666
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008177 161 FNV-AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 161 ~~~-~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
.+. ++....+|..+++.++|++.+..||+..|.+.++..++..++.
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 665 6678899999999999999999999999998877665554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=106.58 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhh--ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFN--EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
.++.....|+..-+--++..+++.|+.+ .+|+++.+.++..+.+..+..++++++++++||+ |+||.+.++..+.++
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 4444455555555666788899999985 4799999999999999999999999999999996 999999888887777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+....++ .. ...+.++.|++.+...|...+...+..|++. +.+.
T Consensus 221 ~~~l~~~~~~----------------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----~~as 267 (310)
T TIGR01272 221 LSIGAALTHG----------------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT----SQGS 267 (310)
T ss_pred HHHHHHHcCC----------------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhH
Confidence 7655544321 11 2234557899999999999999999887432 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAA 198 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~ 198 (575)
++. .+..+|+.++|.+.|.+.+..|.+..|++..+.
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 443 467799999999999999999999988865543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=109.92 Aligned_cols=154 Identities=8% Similarity=-0.022 Sum_probs=110.8
Q ss_pred HhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC
Q 008177 28 YVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTD 107 (575)
Q Consensus 28 yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (575)
++.+++|++..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------------- 360 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------------- 360 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC--------------
Confidence 44457899888888877778888999999999999996 999999999999999888876542100
Q ss_pred CCCccccccchhHHHHHHHHHHHHHcccc-cccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-----
Q 008177 108 GTQNCQEAKGYKALILYLALYLVALGSGC-LKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVW----- 181 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~----- 181 (575)
.... ......++.+.+.+. ..|...++++|.+|+++ |+++.++.+...++|..+++.+.+.
T Consensus 361 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 361 ---------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI---RGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred ---------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 0111 222333344443333 34778899999999544 9999999998888898888665543
Q ss_pred -HhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008177 182 -VQTHSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 182 -l~~~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
+.++.+|++.|++.++..+++.+..++.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 4457889888888776655555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=111.28 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH--HH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV--EL 80 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~--~~ 80 (575)
.++.+....++.....+++..+++.|+.+++|+++.+.+++.+.+.++..++.++.|+++||..+||+..+..... ..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4556666677777778888899999999999999999999999999999999999999999852334333222211 11
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++....... + ..+.....+..++.|+...+..+....+..|.+|+++ |+++
T Consensus 297 ~~~~~~~~~---~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~ 347 (379)
T TIGR00881 297 VSLLVYWLN---P-----------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA---AGTA 347 (379)
T ss_pred HHHHHHhcC---c-----------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch---hHHH
Confidence 111111110 0 0113334455566676555555666778899999555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGF 192 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f 192 (575)
.++++...++|..++|.+.|.+.++.||+..|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998754
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-09 Score=112.55 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILL 86 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~ 86 (575)
++...++..+....+...+|.+.++++|.++...|++.+++.+|..++.++.+++.+|+ ++++.+..+.++++++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33444444555555667788899999999999999999999999999999999999996 99999999999999988888
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
+++++ .+..++..++.|++.........+.+-+..|+ +.|++.++++++
T Consensus 302 al~~~----------------------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~---~~~GRv~si~~~ 350 (524)
T PF05977_consen 302 ALSPS----------------------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPD---WVRGRVFSIYQM 350 (524)
T ss_pred hcchH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHhHHHHHHHH
Confidence 88754 56677788889998888888888999999994 449999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 008177 167 AFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
....+..+|..+.|.+.++.|-+..+.++++.++++.++..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888776665555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-09 Score=111.35 Aligned_cols=174 Identities=13% Similarity=0.017 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhh--ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFN--EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
.++......++..+.+..+....+.|+.. +.+.+....+++...+.+.....+++.|++.||+ |+|+.+..++++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 44555666666666665565666777643 4566677778888888777777788999999996 99999999998888
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+..+..+ +.+.+.++.++.++|.+...|...+++.+..|++. |+++
T Consensus 286 ~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~---~~~~ 335 (395)
T PRK10054 286 IGLVGFIFSGN---------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM---KASY 335 (395)
T ss_pred HHHHHHHHcch---------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc---ceeh
Confidence 88877765321 14445667788999988888888889999998544 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++... ...+|..+||.++|++.++.|....|++.+....++.+..++
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 88654 566899999999999999999988888776666666555553
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.7e-09 Score=107.48 Aligned_cols=155 Identities=10% Similarity=-0.022 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
..+......++....++++..++|.|+++ .|.+..+.+.+.+.+.++..+++++.|+++||+-+||+.+.++.++.+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34555555566677888888999999974 79999999999999999999999999999999524566777777778887
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.+++.+..+ .... ...++.|++.|...+...+.+.+..++ +++++...+
T Consensus 277 ~~~~~~~~~----------------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~~~g~~~~ 325 (355)
T TIGR00896 277 LCGLLFAPM----------------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQ--AAQAAALSA 325 (355)
T ss_pred HHHHHHhhh----------------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccC--HHHHHHHHH
Confidence 777766432 1111 234578999999888877777665543 333788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-ch
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSG-MD 189 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g-~~ 189 (575)
+.+...++|..++|.+.|++.++.| |.
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 8888889999999999999998776 44
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=113.84 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......++..+.+++...++|.|+++.+|.++.+++++.....++..++.++.|++.||+ |||+.+.++..+..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 345556667777888888899999999999999999999999999999999999999999996 9999999999888888
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+..+..+ + +.+...+....++.|+|.+...+.......+..|+++ |+++.+
T Consensus 335 ~~~~~~~~~-~-----------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~---~g~~~~ 387 (485)
T TIGR00711 335 FYWRAFTFT-P-----------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK---IARGSS 387 (485)
T ss_pred HHHHhccCC-C-----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HhHHHH
Confidence 877763211 1 1124445666778899998887777777778888544 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHS 186 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~ 186 (575)
+++...++|..+|+.+.+.+.++.
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.3e-09 Score=113.87 Aligned_cols=152 Identities=7% Similarity=-0.031 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+.......++...++++...++|.|+++.+|.|+.+++.....+.++..++.++.|++.||+ |||+.+..+.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34455566677778888888999999999999999999999999999999999999999997 99999999988888888
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++..... ..+.+...+..++.|+|.|...+.......+..|+++ ++.+.++
T Consensus 340 ~~l~~~~~-------------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---~g~~~~~ 391 (495)
T PRK14995 340 YGLAMTDF-------------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK---AAAAGAI 391 (495)
T ss_pred HHHHHhcC-------------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh---cchHHHH
Confidence 77665321 0113345567788899999988888888889888554 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008177 164 AYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~ 184 (575)
+++..++|..+|+.+.+.+.+
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888764
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-09 Score=109.63 Aligned_cols=145 Identities=18% Similarity=0.066 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+......++....++.+..++| ++.+++|.++.+.+++.+...++..++.+++|+++||+ |||+.+....+....+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 330 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVL 330 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence 3444455566677777777787 66678999999999999999999999999999999997 999554444433333333
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+.....+ ...+++..++.|++.+...+...+++.|.+|+++ |++++++.
T Consensus 331 ~~~~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~ 379 (398)
T TIGR00895 331 VGSTLFS----------------------------PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI---RATGVGWA 379 (398)
T ss_pred HHHHhhC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---HHHHHHHH
Confidence 2221211 3446677788899999999999999999999544 99999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l 182 (575)
+....+|..+||.++|++
T Consensus 380 ~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 380 IGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHhHHhc
Confidence 999999999999998875
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-07 Score=98.47 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=94.5
Q ss_pred ccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHH
Q 008177 356 QAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQF 435 (575)
Q Consensus 356 ~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 435 (575)
.....++-++.-++..+ +.+|.+ ....+..|+.+..+-++.+.... +.|.+++.-
T Consensus 412 ~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~--------------n~W~vLPie 466 (618)
T KOG3762|consen 412 SALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ--------------NPWMVLPIE 466 (618)
T ss_pred hhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc--------------CchheeeHH
Confidence 33444444444444443 345643 34457777777777777777664 677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHH
Q 008177 436 LIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSY-SFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDL 514 (575)
Q Consensus 436 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~ 514 (575)
++.|+..+.......+|+...+|++.|.+++++..... .+|-.+|+.+.|.+....+ .-.
T Consensus 467 ilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-------------------~~t 527 (618)
T KOG3762|consen 467 ILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-------------------ART 527 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-------------------hHH
Confidence 99999999999999999999999999999999876554 6788888888777644322 224
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 008177 515 FYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 515 ~f~i~~~~~~~~~~~~~~~~ 534 (575)
.|++++..+++.++++...-
T Consensus 528 tf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 528 TFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 57777777776666555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-08 Score=105.35 Aligned_cols=165 Identities=7% Similarity=-0.018 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH-
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG- 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~- 82 (575)
++..+...++.....++...++++++.+++|+++.+.+.+...+.++..++.++.|++.||. +| +.++.+.++..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHHHHH
Confidence 44444555555566666667765555568899999999999999999999999999999994 54 4444444443333
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+....++ .+.+.+..++.|++.+...+...+++.+..|+ + +++..+
T Consensus 296 ~~l~~~~~~----------------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 343 (394)
T PRK10213 296 LVLTLWGSD----------------------------KIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q---AEKAGS 343 (394)
T ss_pred HHHHHHhhh----------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c---HHHHHH
Confidence 333333222 44566777888999999999888888888773 2 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVG 202 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~ 202 (575)
+.....++|..+|+.++|++.+..|++..+...++..++.
T Consensus 344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 6677788999999999999999999998888877654433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=109.43 Aligned_cols=176 Identities=15% Similarity=-0.001 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH--------H
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTM--------L 73 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~--------~ 73 (575)
+.+|......++....++....++|.|+.+.+|++..+.+++.+...++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4567788888888899999999999999999999999999999999999999999999999995 654211 1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc
Q 008177 74 IFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE 153 (575)
Q Consensus 74 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 153 (575)
.+......+..+...... . .+....++...+.+.+.++..+.......|..|
T Consensus 340 ~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 391 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYL-S------------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP--- 391 (465)
T ss_pred HHHHHHHHHHHHHHHHHc-C------------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh---
Confidence 111111111111111110 0 012223333444445455555555555556655
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHH
Q 008177 154 SKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH---SGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 154 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
+ .++...++.+...++|+.++|.+.+++.+. .+|+..|.+.++..+++.+...
T Consensus 392 ~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 392 R-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 3 489999999999999999999999988764 3488888888777666655443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=108.17 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHh-hhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYV-FNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl-~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+......++.....++...+++.|+ ++.+|+++.++++....+.++..++++++|++.||+ |||+++..+.++..++.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~ 339 (438)
T PRK10133 261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 4444555666677777778888886 567899999999999999999999999999999996 99999988877776665
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.+..+..+ .. .+....+.|++.+...|...+...|.++++ .+.+.++
T Consensus 340 ~~~~~~~~----------------------------~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~----~~~as~l 386 (438)
T PRK10133 340 LISAFAGG----------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----TKYGSSF 386 (438)
T ss_pred HHHHHcCC----------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh----hccchhH
Confidence 55444321 11 234556789999999999999999988743 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~ 205 (575)
..+ ..+|+.++|.+.|++.+..| -+..|++..+..+...+.
T Consensus 387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 433 34678888899999999887 788888766654444433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=104.21 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.+.......+.....++.....|.|+++++|.++.+.+++.+...++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444445555566677777888899889999999999999999999999999999999996 99999999888888877
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++......+ ......+.+...+.|++.+...+.......|..| ++ ++++.++
T Consensus 287 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~---~g~~~~~ 339 (385)
T TIGR00710 287 VLLEITAILG-----------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV---AGTASAL 339 (385)
T ss_pred HHHHHHHHhc-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc---chHHHHH
Confidence 7766543211 0123445555667888888888888888888776 33 7888888
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhcccchhHHHHH
Q 008177 164 AYFAFCM-GQLIALTLLVWVQTHSGMDIGFGVS 195 (575)
Q Consensus 164 ~~~~~~l-g~~~~~~~~~~l~~~~g~~~~f~~~ 195 (575)
++..... |...++.+ +.+.+..+|...+...
T Consensus 340 ~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHHH-HhccccChHHHHHHHH
Confidence 7766654 55555554 5555544555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.3e-08 Score=104.29 Aligned_cols=173 Identities=15% Similarity=0.150 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFI-GTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
++..+...++...+........+.|+.+++|+++.+.+++.+... ++..++.+++|++.||+ |||+.+..+.++..+.
T Consensus 211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~ 289 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS 289 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444444444443333345556777889999999999987654 46889999999999996 9999988777766655
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHH----HHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLAL----YLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.+.+......+ .+.+.+++.- +..|++.+...+....++.+.+|.++ +
T Consensus 290 ~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~- 341 (402)
T PRK11902 290 NLGYWVLAVTP------------------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ---Y- 341 (402)
T ss_pred HHHHHHHHhcC------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---H-
Confidence 44332211101 0123333333 34566677777778888888877332 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+++....++|..+++.++|++.++.||+..|.+.++..+++++....
T Consensus 342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777767778999999999999999988877666555433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-08 Score=121.89 Aligned_cols=163 Identities=12% Similarity=0.036 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChh-hHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLS-KSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~-~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
++..+...++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++.+.++.++.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 34444455555566667788899999999999999 999999999999999999999999996 9999999888888888
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.+++.+..+ ...+++..++.|++.+...+...+++.+..|++. |+++++
T Consensus 313 ~~~~~~~~~----------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---rg~~~~ 361 (1146)
T PRK08633 313 LFLLPTAPS----------------------------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE---LGKVLA 361 (1146)
T ss_pred HHHHHHhhh----------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc---hhhhhH
Confidence 777776533 5556777888999999988889999999999555 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHHH
Q 008177 163 VAYFAFCMGQLIALTLLVWVQT-HSGMDIGFGVSAAA 198 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~-~~g~~~~f~~~~~~ 198 (575)
+.++..++|.++++.+++.+.. .+++...|++.+..
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999888888776654 23455555554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-08 Score=106.96 Aligned_cols=154 Identities=11% Similarity=0.028 Sum_probs=113.3
Q ss_pred hhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008177 20 AVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSP 99 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 99 (575)
....++|.|+++..+ ++.+.+++.+...++...+..+.+++.||..+.++.+..+.++..++..+++.+++
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 296 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN-------- 296 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--------
Confidence 345677888876655 77888988888777666555555666655337677778888888888777776543
Q ss_pred CCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 100 CNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
...+.+...+.+++.+...|...+++.|..|+++ |++++++++...++|..+||.++
T Consensus 297 --------------------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 297 --------------------LQQLFTLICLFYIGSIIAEPARETLSASLADARA---RGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc---chhhhhHHHHHHHHHHHhcccch
Confidence 3445566677888888888899999999999655 99999999999999999999999
Q ss_pred HHHhhcc---c-chhHHHHHHHHHHHHHHH
Q 008177 180 VWVQTHS---G-MDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 180 ~~l~~~~---g-~~~~f~~~~~~~~i~~i~ 205 (575)
|++.++. + .+..|++.++..+++.+.
T Consensus 354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 354 GWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9998764 2 345565555554444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=108.63 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=125.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++......++...+++......+.|+++.+|.++...++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3455566666677777777777778888888998776666655555677888999999999996 999999999998888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhh
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKL 157 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r 157 (575)
+.+++.+... .+.+.+++..++.|+|.+...+...++.+|..|.+| .+.+
T Consensus 307 ~~~~~~~~~~--------------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~ 360 (448)
T PRK09848 307 GYLLFFWVSV--------------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE 360 (448)
T ss_pred HHHHHHHcCc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccch
Confidence 8877765321 224556677788999999999999999999988654 2345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
+.+.+++.+...+|..+|+.+.+.+.+..|+
T Consensus 361 G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 361 GLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999999887665555
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=108.86 Aligned_cols=167 Identities=14% Similarity=0.020 Sum_probs=109.3
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhccCCChhhHHH------------HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008177 10 LQAFEMTAIAAVGNNLITYVFNEMHFPLSKSAN------------IVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGF 77 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~------------i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 77 (575)
..++..+.+|++..+.|.+++ +.|+++.+.+. ......++..++.+++++++||+ |||+.++++..
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 344456788888888888885 67887653321 12233445666788899999996 99999999888
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 78 VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
+.+++..+.++..+.. .. ...+...-+...++..+..+....+.+|.+|+ +.|
T Consensus 374 ~~~~~~~~l~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~---~~R 426 (502)
T TIGR00887 374 ILTVLFFVLGFAYNHL-----------------------ST-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPT---RYR 426 (502)
T ss_pred HHHHHHHHHHHHHHhc-----------------------ch-hHHHHHHHHHHHHHhcCCCchhhhhhhccCch---hHH
Confidence 8777776666542100 00 11111111112222223345667778999995 449
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHHHHHHHHHHH
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTH----------SGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~i~ 205 (575)
+++.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988773 33455666666555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=120.20 Aligned_cols=180 Identities=9% Similarity=-0.085 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......++..+..+++..++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 345555666666777778888999999999999999999999999999999999999999986 7777666666665555
Q ss_pred HHHHHHhh-c-cCCCCCCCCCCCCCCCCCCccc-cccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 83 FILLSVQA-H-LPQLRPSPCNMLTDTDGTQNCQ-EAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 83 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
.+.+++.. + .+. ........ .....+.+.++++.++.|++.+...+...+++.+.+|++. |++
T Consensus 305 ~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~G~ 370 (1140)
T PRK06814 305 GLDLAFASSSVPAE-----------PAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH---RAR 370 (1140)
T ss_pred HHHHHhcccccccc-----------cccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc---cee
Confidence 55444420 0 000 00000000 0000124556778888999999999999999999999665 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHH
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQT-HSGMDIGFGVSAA 197 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~-~~g~~~~f~~~~~ 197 (575)
+++.+++...+|..+++.+.+.+.. ..++...|++.+.
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999999999998863 4566666655444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.4e-08 Score=101.45 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=120.7
Q ss_pred HHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccC
Q 008177 14 EMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLP 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 93 (575)
...........++.|+++.+|.++.+.|++.+...++..+++++.+++.||+ ++|+.+..+.. ..+...+.++.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~-- 292 (393)
T PRK11195 217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQHS-- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHhH--
Confidence 3444555666777888889999999999999999999999999999999996 99988877753 3333334444322
Q ss_pred CCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHH
Q 008177 94 QLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQL 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 173 (575)
.+...+..++.|++.+...+...+.+.+..|+ + ..++++.++.+...++|..
T Consensus 293 --------------------------~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~-~~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 293 --------------------------LLPAYPLLILIGALGGFFVVPMNALLQHRGHV-L-VGAGHSIAVQNFNENLAML 344 (393)
T ss_pred --------------------------HHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-c-ccchhHHHHHhHHHHHHHH
Confidence 44455667788999888888888888886442 2 1268999999999999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 174 IALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 174 ~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++..+.+.+ +..|-+..+.+..+..++.+.....
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998855 5678777777766655555444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=103.67 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFI-GTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.+.+....++..++++.+.+.++.|+++ +|+++.+.+.+.+... ++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 5666666777788999999999999986 9999999998888766 57789999999999996 9999999988888777
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..+..+..+.. ++-+ .+..+.+.+....++.+++.+...+...+++.|.+|+++ |++.++
T Consensus 289 ~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g 348 (356)
T TIGR00901 289 NAGFVWLASNG----------------HHDG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF---GATQMA 348 (356)
T ss_pred HHHHHHHHhcC----------------cccc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc---cHHHHH
Confidence 76655532100 0000 001224556777888899999999999999999999666 999999
Q ss_pred HHHHHHH
Q 008177 163 VAYFAFC 169 (575)
Q Consensus 163 ~~~~~~~ 169 (575)
+++...+
T Consensus 349 ~~~~~~~ 355 (356)
T TIGR00901 349 LLSSLSA 355 (356)
T ss_pred HHHHHHh
Confidence 9877654
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-06 Score=87.37 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=106.2
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 008177 31 NEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQ 110 (575)
Q Consensus 31 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (575)
+++|++..|++.+.........+..++.|.++||+ |||+.-++..++.+++.+.--.
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~---------------------- 118 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS---------------------- 118 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc----------------------
Confidence 57999999999999999999999999999999997 9999998888888777754322
Q ss_pred ccccccchhHHHHHHHHHHHHHcccccccchhhhh-cccCCcc-chhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhccc
Q 008177 111 NCQEAKGYKALILYLALYLVALGSGCLKPNIISHG-ADQFKKQ-ESKKLSTYFNVAY-FAFCMGQLIALTLLVWVQTHSG 187 (575)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~-~~~~r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~~g 187 (575)
.++..++++|++-|++......+.-+.. .|.-+.. +++..+.-++... +.+.+-++.+..++-++.+..+
T Consensus 119 -------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 119 -------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred -------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 2277899999999999988877666544 3332111 0222455555443 3344455566666667776665
Q ss_pred c--hhHHHHHHHHHHHHHHHHHH
Q 008177 188 M--DIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 188 ~--~~~f~~~~~~~~i~~i~~~~ 208 (575)
. ..+|..+.+...++.+....
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHh
Confidence 4 78899888877766655443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-08 Score=102.91 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|....+++..++..++........+.|.+..+|.+ ...+++.....++..++.+++++++||+ |+|+++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 45667778888888888888888888888888876 6677888889999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhh
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKL 157 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r 157 (575)
+.++..+... .+.+.+++.-++.|++.+...+...++++|..+.+| +++.
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 9999888641 236778888899999999999999999999998655 3446
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
+..++.+.+...+|..+++.+.+.+.+..|+
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8888999999999999999999888766554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-07 Score=99.64 Aligned_cols=182 Identities=11% Similarity=-0.011 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+..|.+..+.++..-.+.+...++|.|++++++ ............+...+.+|++|+++||+ |+||+++++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 456777777777666667777799999988663 33333333445677889999999999996 999999999987777
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCc------c---
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKK------Q--- 152 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~------~--- 152 (575)
+....... +|. ....+...+.+..+...++.|.-+.....++.+.+|+ +
T Consensus 329 ~~~~~~l~--lp~--------------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~ 386 (462)
T PRK15034 329 FSALLFLT--LPG--------------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKG 386 (462)
T ss_pred HHHHHHHH--hcc--------------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccc
Confidence 76443332 121 0012344455555454555555556666666666663 0
Q ss_pred ---------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 008177 153 ---------ESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHS-GMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 153 ---------~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+++-+...|+......+|+.+.|.+-+...+.. ++...|+...+..+++..+.+.
T Consensus 387 ~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 387 GSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred cchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 0124678888888888999999997777766554 4777888777766666555544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=98.05 Aligned_cols=166 Identities=9% Similarity=-0.025 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch---HHHHH-HHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSF---WTMLI-FGF 77 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr---~~~~~-~~~ 77 (575)
+.+|.+....++....+|++.+++|.|++ +.|++.. .+.......+...++ .++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 45677888888999999999999999996 4678764 555555544444444 57888885 553 33232 333
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 78 VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
+.+++..+.+...+ .....+...+.+++.....+...++.+|.+|++. |
T Consensus 266 ~~a~~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---r 314 (368)
T TIGR00903 266 LIAAFFLALAFELN----------------------------RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---H 314 (368)
T ss_pred HHHHHHHHHHHccc----------------------------cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh---c
Confidence 33333333333221 1123334445666667777778899999999555 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
+++.++.+...++|+..+|.+.+.+.. |.+..|.+.+...+++.+..
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887773 66666776666655555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=98.00 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
++-++..++..=..-+.......|-.+++|++..+..++....++...++++++|+|.||+ |.|+++.+++++..+..+
T Consensus 255 ~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 255 VLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIAAL 333 (438)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHHHH
Confidence 3334444444444445667777888999999999999999999999999999999999996 999999999998888777
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
..-+... ...+++.-++.|...|+.++..-++.++..|+++ -++.||+|
T Consensus 334 ~~~~~~~----------------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k---~~~fFgly 382 (438)
T COG2270 334 YLIFLEG----------------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK---EGRFFGLY 382 (438)
T ss_pred HHHHccc----------------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc---ccceeehh
Confidence 6666432 2335666678899999999999999999999665 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~ 207 (575)
......+...||.+.+.+.+..| -|..+..-.++..++++++.
T Consensus 383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 99999999999999998877655 56666655555666655443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=100.40 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCC-hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFP-LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s-~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
|..+...++..+.++....+++.|+.+++|.+ ..+.+++.+...+...++.++.|+++||+ |+|+.+........++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 33445555566677788999999999999999 89999999999999999999999999996 99988888888877777
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
..+.+... ..+....++..++.|++.+...+...+++.|..|+++ |+++.++
T Consensus 288 ~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~ 339 (352)
T PF07690_consen 288 LGLLLLPF-------------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY---RGTAFGL 339 (352)
T ss_dssp HHHCCSHH-------------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH---HHHHHHH
T ss_pred HHHHHHHH-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH---HHHHHHH
Confidence 77665432 1124456667778999999999999999999999555 9999999
Q ss_pred HHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIAL 176 (575)
Q Consensus 164 ~~~~~~lg~~~~~ 176 (575)
.+...++|..+||
T Consensus 340 ~~~~~~~~~~igP 352 (352)
T PF07690_consen 340 FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=103.42 Aligned_cols=142 Identities=12% Similarity=-0.015 Sum_probs=101.1
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 008177 32 EMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQN 111 (575)
Q Consensus 32 ~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (575)
.++.+.... .....+...++.++.++++||+ |||+.+.++.++..++.+++.+..+
T Consensus 352 ~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-------------------- 407 (505)
T TIGR00898 352 NLGGNIYLD---LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-------------------- 407 (505)
T ss_pred ccCCChHHH---HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------
Confidence 455543322 2344556777888999999996 9999999999988888877776532
Q ss_pred cccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 008177 112 CQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIG 191 (575)
Q Consensus 112 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~ 191 (575)
.......+..++.+++.+...+....+.+|.+|+ +.|+++.++.+....+|++++|.+.+ +. ..++..+
T Consensus 408 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~ 476 (505)
T TIGR00898 408 ------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT---VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLP 476 (505)
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH---HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhH
Confidence 1112333444555666666777888999999995 44999999999999999999999988 43 3556667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008177 192 FGVSAAAMAVGLISLIF 208 (575)
Q Consensus 192 f~~~~~~~~i~~i~~~~ 208 (575)
+++.++..+++.+..++
T Consensus 477 ~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 477 LVLFGGLALLAGILTLF 493 (505)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 77766655555444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-07 Score=91.44 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.|.+....=+.++.+|.++.++|.++. +.|+|..++|++.+...+.+....+..-.+++|...+|+.......++.+|.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 566666666789999999999999997 7899999999999999999999999999999987789999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
+.+.+.+. +...+. .++.|+|.|+.+|....++.+..+. +++-++.-++
T Consensus 289 ~G~~~~P~---------------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~--a~~Aa~LSgm 337 (395)
T COG2807 289 VGLLLAPG---------------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSD--AAIAAALSGM 337 (395)
T ss_pred HHHHHhhh---------------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCC--hHHHHHHHHH
Confidence 99988642 112222 4789999999999999999998775 3445666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAA 198 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~ 198 (575)
.+-...+=+..||.+.|++.|..| |+.+...-+..
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~ 373 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALA 373 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHH
Confidence 777777778889999999988754 88776654443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-08 Score=105.01 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG--SFWTMLIFGFVEL 80 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~~~~ 80 (575)
.++....-..+..++++.....++.|.. .++++..+++.+.++..+...+++++.|+++|+. . ++.+..++++...
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~g 376 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAG 376 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHH
Confidence 4555666666788888888888998887 8999999999999999999999999999999996 6 4456666666677
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++...++++.+ +..++..-++.|+..|......+..+.|..+.++ ...+
T Consensus 377 l~~~~~p~~~~----------------------------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~---l~~a 425 (509)
T KOG2504|consen 377 LARLFLPFATT----------------------------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK---LSNA 425 (509)
T ss_pred HHHHHHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh---cchH
Confidence 77767777654 6678888888999999999998899999999555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhc
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
+|+......++.++||.++|++.+..| |...|+..++..+++....++..
T Consensus 426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999998887 99999999888777776555544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=97.89 Aligned_cols=162 Identities=14% Similarity=0.008 Sum_probs=119.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++.+++..++...+.+......+.|.+..++ +....+++.+...++..++.++.++++||+ |+|+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 345566667777777777776766655554444 566677777777788899999999999997 999999988887776
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhh
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKL 157 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r 157 (575)
+.+...+..-.+ ..+.+.+++.-++.|++.+...+...++++|..+.+| ++..
T Consensus 309 ~~~~~~~~~~~~-----------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLAA-----------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhccC-----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 665554321000 1224556666778889999999999999999977543 3334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 158 STYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 158 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
+..++...+...+|..+++.+.|++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5688889999999999999999998776665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-07 Score=96.07 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=97.8
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008177 10 LQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQ 89 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~ 89 (575)
...+............+.|+.+++|+++.+.+.+.....++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 211 ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555667788889999999999999999999999999999999996 99999999999888888877765
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHH
Q 008177 90 AHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFC 169 (575)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 169 (575)
.+ .....+....+..|++.+. +. ....+..|.++ |+ +.......
T Consensus 290 ~~--------------------------~~~~~~~~~l~~~g~~~~~--~~--~~~~~~~~~~~---~~---g~~~~~~~ 333 (392)
T PRK10473 290 PS--------------------------HAVSLFGITLICAGFSVGF--GV--AMSQALGPFSL---RA---GVASSTLG 333 (392)
T ss_pred HH--------------------------HHHHHHHHHHHHHHHHHHh--HH--HHHHHhccCcc---cc---cHHHHHHH
Confidence 32 1112222223333443332 22 22233344322 33 22233456
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHH
Q 008177 170 MGQLIALTLLVWVQTHSGMDIGFGVSAA 197 (575)
Q Consensus 170 lg~~~~~~~~~~l~~~~g~~~~f~~~~~ 197 (575)
++..+++.+++++.++.|+.....+.+.
T Consensus 334 ~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 334 IAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 7777788888888877787654444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-07 Score=98.01 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++.++...++...+........+.|.+..++ ++...+.+.....+...++.+++++++||+ |+|+.+..+.+..+++
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL 307 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence 34445555555545554444434434343343 233444555666677888889999999997 9999999888766654
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhhh
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKLS 158 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r~ 158 (575)
.....+.. ..+...+++..++.|++.+...+...++++|..+.+| ++..+
T Consensus 308 ~~~~~~~~--------------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g 361 (444)
T PRK09669 308 SALIFFIP--------------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDG 361 (444)
T ss_pred HHHHHHhC--------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcch
Confidence 44333321 1224556777788999999999999999999987544 23346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
..++.+.+...+|..+|+.++|++.+..|+
T Consensus 362 ~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 362 LVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 678889999999999999999998877666
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=92.50 Aligned_cols=150 Identities=10% Similarity=-0.025 Sum_probs=107.3
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008177 10 LQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQ 89 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~ 89 (575)
...+....++.+..+.|.|++ ++|+++.+.++....+.++..++.++.+++.||+ |+|+.+....+..+++.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666777888875 5899999999988888888999999999999996 99998766666555554443322
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHH
Q 008177 90 AHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFC 169 (575)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 169 (575)
...+ ......+++...+.|++.+...+...+...|..| ++ ++++.++.+....
T Consensus 289 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~g~~~g~~~~~~~ 341 (401)
T PRK11043 289 SLLS-----------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA---TGKAAALQNTLQL 341 (401)
T ss_pred HHhc-----------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc---ChHHHHHHHHHHH
Confidence 1100 0113334555667788888888888888777765 23 8999999888878
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 008177 170 MGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 170 lg~~~~~~~~~~l~~~~g~ 188 (575)
.++..++.+.+.+.+....
T Consensus 342 ~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 342 GLCFLASLLVSALISTPLL 360 (401)
T ss_pred HHHHHHHHHHHHccCCChh
Confidence 8888888888888764333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-06 Score=90.99 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+......++.....+.+....+.++.+++|+++.+.+++.+...++..++.+++|+++||+ |||+.+.++..+..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666777788888999999999999999999999999999999996 999999988876544333
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
........+ .+.+.+.++..+.+.+.+...+.....+.|..| +. ++++.++.
T Consensus 276 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~g~~~~~~ 327 (377)
T PRK11102 276 WLVVSALLD------------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM---AGTASSLA 327 (377)
T ss_pred HHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc---chHHHHHH
Confidence 222211000 112333334444444445555555666777655 33 77778775
Q ss_pred HHH-HHHHHHHHHHHHH
Q 008177 165 YFA-FCMGQLIALTLLV 180 (575)
Q Consensus 165 ~~~-~~lg~~~~~~~~~ 180 (575)
... ..+|+.+++.+++
T Consensus 328 ~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 328 GTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 443 3566666666543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-06 Score=83.97 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILL 86 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~ 86 (575)
.+.++.+.. ..|.+ +.....+++.+|+|.+|.+.+...-.+|..++ ++.|.+.|++ |.+.+++++.+...+|+.++
T Consensus 8 ~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~ 83 (250)
T PF06813_consen 8 SIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLL 83 (250)
T ss_pred HHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHH
Confidence 333443333 34444 44555778999999999999999999999875 8889999997 99999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH
Q 008177 87 SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF 166 (575)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 166 (575)
..+.+- .....+.+.+.+..++.|.+.+.........-.+.||+ + |+++.++.-.
T Consensus 84 ~l~~~~---------------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~---RG~vvgilk~ 138 (250)
T PF06813_consen 84 WLAVSG---------------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S---RGTVVGILKG 138 (250)
T ss_pred HHHHhC---------------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c---cCceehhhhH
Confidence 876431 11123467777777777777666555555555577873 4 8999999777
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 167 AFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 167 ~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
...+++.+=..+...+.+...-+..+.++....+++++..++.++
T Consensus 139 ~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 139 FFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 777777766555544544433445555555555556655555443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-06 Score=90.93 Aligned_cols=185 Identities=18% Similarity=0.071 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.....+.+.+...+.--.........+-++-|++..++.++.........+.++.+.++.||+ |||+.++++..+..+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence 345566666666666655666666677778999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHH--HHHHHHHHHHHccc-ccccchhhhhcccCCccchhhhhh
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKAL--ILYLALYLVALGSG-CLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
.+++.....+.. -.+ .+. ..+++.++..++.+ +..|...-+.+|.+|++. |..
T Consensus 349 ~~~~~~~~~l~~--------------------~~~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~---R~a 404 (485)
T KOG0569|consen 349 LLLMSIALFLSN--------------------SFG-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA---RSA 404 (485)
T ss_pred HHHHHHHHHHHH--------------------Hhh-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc---hHH
Confidence 888877643111 000 111 12333333333322 235788889999999666 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhccee
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVY 213 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 213 (575)
+.++......+..++....-..+.+..|- +.|.+..+..++..+..++..|+.
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 99987777777776666666667666665 556666666666666666655544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=89.59 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
+++..+...++...+.-....+...|+++.-+.+....+.+.+...+.-.+.-.+.+++-.|+ |.|++++++.+..++=
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR 286 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344455555666667777778888999854447888888887777788888888999999997 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
+.+.+...+ |. ...+....+...++|+..|........++.+..|++. |+++.+
T Consensus 287 ~~l~a~~~~-~~----------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~---~at~Q~ 340 (400)
T PF03825_consen 287 WLLYAYFSD-PW----------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL---RATAQG 340 (400)
T ss_pred HHHHHHhcC-Cc----------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc---hHHHHH
Confidence 999888632 10 0112223344567999999999999999999999555 999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhhcccchhH
Q 008177 163 VAYFA-FCMGQLIALTLLVWVQTHSGMDIG 191 (575)
Q Consensus 163 ~~~~~-~~lg~~~~~~~~~~l~~~~g~~~~ 191 (575)
++... ..+|..+|..++|++.+++|-+..
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 97765 589999999999999998775543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-07 Score=94.16 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
..+......++.....+++..+++.|+++.+|+++.+++++.+.+.+...++.+++|+++||+ |||+.+..+......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 345555555666667778889999999999999999999999999999999999999999996 9999888887777776
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
..++.+.... ..+...+.+...+.+++.|...+...++++|..| ++ ++++.+
T Consensus 305 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~---~g~~~g 356 (366)
T TIGR00886 305 AFLVVLGLVS------------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA---TGAVSG 356 (366)
T ss_pred HHHHHhcCCC------------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh---cccHHH
Confidence 6666553210 0024444445555555666666667778888876 23 899999
Q ss_pred HHHHHHHHH
Q 008177 163 VAYFAFCMG 171 (575)
Q Consensus 163 ~~~~~~~lg 171 (575)
+.+...++|
T Consensus 357 ~~~~~~~~g 365 (366)
T TIGR00886 357 LVGAIGNLG 365 (366)
T ss_pred HHHHhccCC
Confidence 877766655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=88.03 Aligned_cols=171 Identities=9% Similarity=-0.043 Sum_probs=113.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhc--cCC----ChhhHHH-------------HHHHHHHHHHHHhhhhHHHh
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNE--MHF----PLSKSAN-------------IVTNFIGTVFLLSLFGGFLS 62 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~~~----s~~~~~~-------------i~~~~~~~~~~~~~~~G~la 62 (575)
|..+.++.+.|.+.+++||+.-......+.. .+. .+.+.-. =.-+..+.-+.|.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 4456778888999999999876554433321 111 1111111 11223456778899999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchh
Q 008177 63 DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNII 142 (575)
Q Consensus 63 D~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 142 (575)
||+ |||++|...++++.+..+++....+ .. .-..++..+|+.+..+. .+..
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~-----------------------rn-~~tvllf~arafisg~f----qvaY 456 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-----------------------RN-AYTVLLFTARAFISGAF----QVAY 456 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC-----------------------cc-hhHHHHHHHHHHHhchh----eEEE
Confidence 995 9999999999999999888876532 11 11345667787775443 4456
Q ss_pred hhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008177 143 SHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 143 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
.|--|.+| .+.|+.+.|.-..+..+|+++.|.++ ...+ ..-..+..+.....+++.+..
T Consensus 457 vYtPEVyP---TavRatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 457 VYTPEVYP---TAVRATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred EecCcccc---hhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHh
Confidence 88899999 56699999999999999999999998 3332 333333344444444444433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-06 Score=73.23 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=90.3
Q ss_pred cchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHH
Q 008177 357 AIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFL 436 (575)
Q Consensus 357 ~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 436 (575)
....+..++..++.+++.| |.++| +.+..+..+..++.+..... .+.+......+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d----~~g~~-------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 59 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTD----RFGRK-------PVLLVGLFIFVLSTAMFALS--------------SNITVLIIARF 59 (141)
T ss_pred EeehhHHHHHHhhHHHHHh----hcchh-------HHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHH
Confidence 3344556666677766654 44333 23555555665555554433 13455566678
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHH
Q 008177 437 IFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFY 516 (575)
Q Consensus 437 l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f 516 (575)
+.+++.+...+....++.|.+|++.|++++++.++.+.+|..+++.+.+.+.+. .++...|
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~~~ 120 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-------------------LGWRAPF 120 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-------------------cchHHHH
Confidence 888888888888899999999999999999999999999999999998877421 1223456
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008177 517 WLLAALSLINFFNYLFW 533 (575)
Q Consensus 517 ~i~~~~~~~~~~~~~~~ 533 (575)
++.+...++..+..+++
T Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 121 LFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666666655555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.4e-07 Score=95.19 Aligned_cols=177 Identities=15% Similarity=0.076 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-------chHHH-H
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG-------SFWTM-L 73 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-------rr~~~-~ 73 (575)
..+|.++...++++.+++.+..++|.|+.+.+|++..+.|++.+.-.+...+..+++|.++||..- +||.+ .
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 357889999999999999999999999999999999999999999999999999999999999622 11222 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc
Q 008177 74 IFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE 153 (575)
Q Consensus 74 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 153 (575)
++....++..+.+++..+- ........+.++..+.|+..++. ..-..|..|
T Consensus 338 i~~~~~ai~l~~l~~~~~~----------------------~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~ap--- 388 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDE----------------------HRLLAVILLTIAIGLSGFNISGF----YKNHQDIAP--- 388 (466)
T ss_pred HHHHHHHHHHHeeeecCCC----------------------cchHHHHHHHHHHHHcccchhhh----Hhhhhhccc---
Confidence 2222333333433433210 00011222222222333333332 222223233
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHH
Q 008177 154 SKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH---SGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 154 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+.-+..+++.+...++.+.++|.+.+.+.+. ..|+..|++.+...+++-+.+.+
T Consensus 389 -q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 389 -QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 2258889999999999999999999998842 46999999999888777655544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00011 Score=78.07 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHH
Q 008177 44 VTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALIL 123 (575)
Q Consensus 44 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (575)
.++......+.+++++.+.|+. |.|+.+.++...+..-....-.- |-..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------------N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------------NSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------------chHHH
Confidence 4555667788899999999995 99999999999877766555542 24568
Q ss_pred HHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 124 YLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 124 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
+++-.+.|+|.+........+++|..++ +++.+..++.....+.+.++|..+
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~---~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTR---ETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCCh---hhHHHHHHHHHHHHHHHHHhhhHh
Confidence 8999999999999999999999999884 447777777666666666666554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-06 Score=88.33 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccC---CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMH---FPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV 78 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~---~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~ 78 (575)
|++|............+++.-.-++.|.+..++ .++...|.+.+...+.-.+.-.+..++-+|+ |.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 456665555555555555555567777765443 3445677777888888888889999999996 999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 79 ELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.++=..+++++++ .+.+.+.+.+.++-.+..-..+.-|+++.+|+ +..+
T Consensus 299 ~~iRi~~~~~~~~----------------------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~---rlsA 347 (412)
T PF01306_consen 299 MAIRIIGSGFATN----------------------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDK---RLSA 347 (412)
T ss_dssp HHHHHHHHHT--S----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G---GGHH
T ss_pred HHHHHHHHhhhcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---hHHH
Confidence 9999999999765 67789999999999999999999999999994 4366
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 159 TYFNV-AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 159 ~~~~~-~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
+...+ ++.+..+|..+.+.++|++.|+.|.+..|++.+...++..++..+..+
T Consensus 348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 77776 577889999999999999999999999988777666655555555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-06 Score=89.83 Aligned_cols=162 Identities=11% Similarity=0.052 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhc-cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNE-MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
++......++......+..++++.|+.+. .+.+....+...+.+..+..++++++|+++||+ ++|+++.+..+..++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 44445556665555557778899998653 255556666677777788899999999999996 9999998888888887
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.++..+..+ .. ......+.|++.+.+.|.+.++..+..+++. +.....
T Consensus 313 ~ll~~~~~~----------------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~---~~~s~~ 360 (410)
T TIGR00885 313 CLGSIFAGG----------------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT---KYGAAG 360 (410)
T ss_pred HHHHHHcCC----------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHH
Confidence 777776432 12 3455667788888889999999999988432 322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc------cchhHHHHHHHHHH
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHS------GMDIGFGVSAAAMA 200 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~------g~~~~f~~~~~~~~ 200 (575)
+ . +..+|+.+.|.+.|++.|.. +.+..|.++.+..+
T Consensus 361 l-~-~~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 361 L-V-MAIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred H-H-HHHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 2 2 33499999999999999954 47788887665433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-05 Score=84.69 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.....++..++...+.....+.+..|.+..+|-++....+.......+..++.++..++.+|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 344455556666666666667777788888888888888888888888888899999999996 9999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhhh
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKLS 158 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r~ 158 (575)
.++..+.+. .+..++++..++.++|.+...+...++++|..+-.| .++-|
T Consensus 316 ~~~~~f~~~--------------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTPA--------------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhcC--------------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 999998642 346778888899999999999999999999987665 33346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
-.++.+.+..=+|.+++..+.|++-...|+
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667778888888888888888877655543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.3e-06 Score=81.45 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=117.6
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPL--SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQ 89 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~ 89 (575)
+.............+.+.. +++.+. .+.+++.+.+.++..++.++.|.++||+ |||+.+..+.....++.+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhC
Confidence 3333333334444554444 555555 5889999999999999999999999997 99998888887766666666664
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHH-HH
Q 008177 90 AHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYF-AF 168 (575)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~ 168 (575)
.+ .....+.+.|+.+|++.+...+...+++.|.+|+ . +.|+...+.... ..
T Consensus 90 ~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 141 (338)
T COG0477 90 PN--------------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-TERGLAVGLVTLGAG 141 (338)
T ss_pred cc--------------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-hHHHHHHHHHHHHHH
Confidence 32 2367788999999999999999999999999985 1 448888888777 57
Q ss_pred HHHHHHHHHHHHHHhhc--ccchhHHHHHHHHH
Q 008177 169 CMGQLIALTLLVWVQTH--SGMDIGFGVSAAAM 199 (575)
Q Consensus 169 ~lg~~~~~~~~~~l~~~--~g~~~~f~~~~~~~ 199 (575)
.+|..+++.+++.+... .+|+..|.......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 142 ALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888898777776654 57888666555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.2e-06 Score=86.37 Aligned_cols=140 Identities=13% Similarity=0.035 Sum_probs=98.1
Q ss_pred hhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 008177 20 AVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSP 99 (575)
Q Consensus 20 ~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 99 (575)
......+.|+++.+|.++.+.+++......+..++.++.+++.||+ |++... ......++.+.........
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~------ 295 (394)
T PRK11652 225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG------ 295 (394)
T ss_pred HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc------
Confidence 3344566788878999999999998888888889999999999996 743332 2222222222211110000
Q ss_pred CCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 100 CNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
..+.+.+.+...+.++|.+...|...++..|.+|+ + +++..++.+...++|..+++.++
T Consensus 296 -----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 296 -----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L---AGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred -----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c---chHHHHHHHHHHHHHHHHHHHHH
Confidence 01234566777888999999999999999998862 3 68888898888899999999999
Q ss_pred HHHhhcccch
Q 008177 180 VWVQTHSGMD 189 (575)
Q Consensus 180 ~~l~~~~g~~ 189 (575)
+.+.+...+.
T Consensus 355 ~~~~~~~~~~ 364 (394)
T PRK11652 355 AMLPQTGQFS 364 (394)
T ss_pred HHccCCchHH
Confidence 8887654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.2e-06 Score=89.82 Aligned_cols=178 Identities=12% Similarity=0.034 Sum_probs=125.3
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhh----HHHHHHHHHHHHHHHhhhhH----HHhhhcccchHHH--HHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSK----SANIVTNFIGTVFLLSLFGG----FLSDSYLGSFWTM--LIFGFVELS 81 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~----~~~i~~~~~~~~~~~~~~~G----~laD~~~Grr~~~--~~~~~~~~i 81 (575)
.+....+.-..+.++.|..+..+.+... .+++.+...+...+.+++.. ++.||-.+.+... .+++++.++
T Consensus 282 ~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~ 361 (475)
T TIGR00924 282 VVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGA 361 (475)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 3444455455666777877665544322 66777777777777766644 5555521334433 778888888
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+...++++.+. .+.....+++.+.+..++.++|.....|...+++++..|+ +.|++++
T Consensus 362 ~~~~~~~~~~~-------------------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~---~~~g~~~ 419 (475)
T TIGR00924 362 SFLTFAASIWF-------------------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ---RLMGQML 419 (475)
T ss_pred HHHHHHHHHhh-------------------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH---HHHHHHH
Confidence 88887764220 0111124577789999999999999999999999999994 4499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
+++.....+|..+++.+........+|...|...++.+++..+++.+..|
T Consensus 420 g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 420 GMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887777678888887777666666555555444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=84.47 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
.+.++...++...+..........|.+..+|. +...+++...+.++..++.+++++++||+ |+|+++..+..+..+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 33444444555555544444555444444443 34456677778888899999999999996 99998876655444433
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc----hhhhhh
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE----SKKLST 159 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~----~~~r~~ 159 (575)
.+..+.++ .+...+++.-++.|++.+...+...++++|..+.+| ++.-+.
T Consensus 308 ~~~~~~~~--------------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~ 361 (460)
T PRK11462 308 LAMFFVPM--------------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGI 361 (460)
T ss_pred HHHHHhch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHH
Confidence 33333211 112233444556777777777777888998877443 222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTHSGM 188 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~~g~ 188 (575)
.++...+...+|..+++.++|++....|+
T Consensus 362 ~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 362 SFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46777788999999999998887655555
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00041 Score=72.76 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=116.3
Q ss_pred hhHHHHHHhhhc-cCCChhhHHH-HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 21 VGNNLITYVFNE-MHFPLSKSAN-IVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 21 ~~~~~~~yl~~~-~~~s~~~~~~-i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
.-|++..|+.+. .|++..|... +.-...-.+....++...+.|.. |-|++++++.+...+...++-+.++
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s------- 93 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS------- 93 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc-------
Confidence 457788999987 8999999874 33334456667778889999985 9999999999999999999888765
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
...+.+.-+.-|++.++ ..+..+++-...|+++ =.++.+....+.-+|-.++..+
T Consensus 94 ---------------------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~---yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 94 ---------------------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH---YQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred ---------------------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 66688888888888776 4566677766667443 6677777777777887877777
Q ss_pred HHHHhh--cccchhHHHHHHHHHHHHHHHHHHh
Q 008177 179 LVWVQT--HSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 179 ~~~l~~--~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
+-.+.. ..+++..++++.....+++++.++.
T Consensus 149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 149 GQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 555544 3446667777777767776665554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-05 Score=84.43 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......++....++++....|.|+++.+|+++.+.++.......+..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 345555555666677777778889999999999999999998888888888888888876553 4555544444444455
Q ss_pred HHHHHHhhc-cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 83 FILLSVQAH-LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
.+++....- .+ .++...+++.++.++|.+...|+..+..-...+ .+ ++++.
T Consensus 298 ~~l~~~~~~~~~------------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~-~~---~G~a~ 349 (413)
T PRK15403 298 LALLIVGNLLWP------------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN-LP---KGTVS 349 (413)
T ss_pred HHHHHHHHHHcc------------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC-CC---CcHHH
Confidence 444443210 01 113335667778888888888887753322211 12 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMA 200 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 200 (575)
+++......+...++.+++++..+ +-+++|....+...
T Consensus 350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 777777777788888888888664 66667766555433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-05 Score=72.63 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=98.5
Q ss_pred HHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 008177 27 TYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDT 106 (575)
Q Consensus 27 ~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (575)
.|+-+.+++...+++.+.-+-.....+...+.|-|+||- |||+. +..+.+.++++.+..+-|+
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKra----cvtycitYiLsCiTKhSpq------------ 123 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRA----CVTYCITYILSCITKHSPQ------------ 123 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccc----eeeehHHHHHHHHhhcCCc------------
Confidence 456678899999999877766666667777889999995 99996 4556677777777766555
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHcccccccchhh-hhcccCCccc--hhhhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q 008177 107 DGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIIS-HGADQFKKQE--SKKLSTYFNV-AYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~--~~~r~~~~~~-~~~~~~lg~~~~~~~~~~l 182 (575)
+-.++++|.+-|+..+....+.-+ +++|...++. .+-...-++- ..+...+-++++.+.+..+
T Consensus 124 -------------YkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~l 190 (454)
T KOG4332|consen 124 -------------YKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL 190 (454)
T ss_pred -------------eEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 556999999999988887666544 4566553322 0001111221 1123444555566666666
Q ss_pred hhcc--cchhHHHHHHHHHHHHHHHHH
Q 008177 183 QTHS--GMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 183 ~~~~--g~~~~f~~~~~~~~i~~i~~~ 207 (575)
.+.. |--.+|-.+++...++..+.+
T Consensus 191 vd~~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 191 VDTFSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred HHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 6654 456678777776666654443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0052 Score=66.25 Aligned_cols=166 Identities=7% Similarity=-0.034 Sum_probs=103.4
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCC-----ChhhHHHHHHHHHHHHHHH-hhhhHHHhhhcccchHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHF-----PLSKSANIVTNFIGTVFLL-SLFGGFLSDSYLGSFWTMLIF 75 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~-----s~~~~~~i~~~~~~~~~~~-~~~~G~laD~~~Grr~~~~~~ 75 (575)
++++......||..+.++.+-+ +++.+.. +.....++-+...+...+. .++.+++++|+ +|++.+-+.
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~~ 80 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYTV 80 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHHH
Confidence 4566666666777777655543 4666655 3457788888776766655 88899999996 999999888
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC-CCccccccch---------hHHHHHHHHHHHHHccccccc-chhhh
Q 008177 76 GFVELSGFILLSVQAHLPQLRPSPCNMLTDTDG-TQNCQEAKGY---------KALILYLALYLVALGSGCLKP-NIISH 144 (575)
Q Consensus 76 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~l~~~~~l~g~g~g~~~~-~~~~~ 144 (575)
...+..-+.+.++.-- | .++....+. ..+.....+. +.|...+.-+...+-...... ...++
T Consensus 81 ~~~F~~~f~lF~~vl~-p------~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~f 153 (472)
T TIGR00769 81 ISPFLGFFALFAFVIY-P------LSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGF 153 (472)
T ss_pred HHHHHHHHHHHHHHHh-c------chhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777776521 1 011100000 0000000000 111111222222232233333 67889
Q ss_pred hcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008177 145 GADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQ 183 (575)
Q Consensus 145 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 183 (575)
..|.++.+| -.|.++++..+.|+|..+++.+..++.
T Consensus 154 andi~t~~q---akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 154 ANQITTIDE---AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999666 778999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=86.78 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=121.1
Q ss_pred HhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHHHHHHHHHHHHHHHHHHhhccC
Q 008177 16 TAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLG--SFWTMLIFGFVELSGFILLSVQAHLP 93 (575)
Q Consensus 16 ~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~~~~i~~~~~~~~~~~~ 93 (575)
.+.-..-+.++++..+.+..+..+.|...--..+.+.++..+.|.++||+ + |-..-+.+++...+......++++
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~~-- 360 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFATS-- 360 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhhh--
Confidence 33334556677888888885555889888888899999999999999997 9 544555555555555555555544
Q ss_pred CCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchh---hhhhHHHHHHHHHHH
Q 008177 94 QLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESK---KLSTYFNVAYFAFCM 170 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~l 170 (575)
+..+++-+...+++.+.......+...++.+..+.. .-+...++...+..+
T Consensus 361 --------------------------~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl 414 (464)
T KOG3764|consen 361 --------------------------IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL 414 (464)
T ss_pred --------------------------HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH
Confidence 566888888888888888888888888887765533 567888899999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 008177 171 GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGL 203 (575)
Q Consensus 171 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 203 (575)
|..+||.++|.+.+..|++|...+.+..-++-.
T Consensus 415 a~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 415 AYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred hhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766665544333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-05 Score=83.29 Aligned_cols=178 Identities=11% Similarity=-0.038 Sum_probs=114.6
Q ss_pred HHHHHhhhhhhHHHHHHhhh--ccCCCh------hhHHHHHHHHHHHHHHHhhhh----HHHhhhcccchHHHHHHHHHH
Q 008177 12 AFEMTAIAAVGNNLITYVFN--EMHFPL------SKSANIVTNFIGTVFLLSLFG----GFLSDSYLGSFWTMLIFGFVE 79 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~--~~~~s~------~~~~~i~~~~~~~~~~~~~~~----G~laD~~~Grr~~~~~~~~~~ 79 (575)
++....+|.+..-.+.++.. ..+.+. ...+++.+...+...+..++. +++.||+ +..+.+.+++++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34555666666666666442 111111 124455555554555555555 7777775 7888999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
++++..++.+.+.+. +....+.+.+.+..++.|+|.++..|...+++.+..| ++.|++
T Consensus 361 ~l~f~~l~~~~~~~~-------------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP---~~~rg~ 418 (500)
T PRK09584 361 SGAFLVLPLGAKFAN-------------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP---QRLMGF 418 (500)
T ss_pred HHHHHHHHHHHHhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc---HHHHHH
Confidence 999999888754211 0012335568889999999999999999999999999 455999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----------cccchhHHHHHHHHHHHHHHHHHHhcce
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQT----------HSGMDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
++|++.....+|..++..+.+.... ..++...|...++..++..++++...++
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~ 481 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPK 481 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777777777666543221 1135566666555444444444443443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=87.96 Aligned_cols=137 Identities=7% Similarity=-0.194 Sum_probs=107.4
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 008177 29 VFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDG 108 (575)
Q Consensus 29 l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (575)
..+.+|+++.++|.+.+...++..++....+++.+|+ +.|+++.++.++..++........+-..+
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~------------- 344 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL------------- 344 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc-------------
Confidence 3467999999999999999999999999999999996 99999999999988887665422110000
Q ss_pred CCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 109 TQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSG 187 (575)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g 187 (575)
... ..........-++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 345 ----~~g-i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~---egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 345 ----AFG-ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC---ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ----ccC-CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc---eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000 0011234445567788888888888999999999665 9999999999999999999999999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=74.76 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFIL 85 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~ 85 (575)
..+...++.++++..=-..+-+|--+.+|+|..|...+.+....+..++-...|++..|-.++|+.-.+++....+++.+
T Consensus 212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34444555666666666677788888999999999999999999999999999999885569999999999999999888
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHH
Q 008177 86 LSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAY 165 (575)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 165 (575)
..++.... +.+.+..+.++.|++.|.......+..-|..++++ .+.++|.+.
T Consensus 292 ii~a~~~~-------------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~---aG~~mG~WG 343 (403)
T PF03209_consen 292 IILAGPLG-------------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR---AGLFMGAWG 343 (403)
T ss_pred HHHHHhcc-------------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc---hhHHHHHHH
Confidence 88775422 26778999999999999999999999999998655 788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHHHHHHHHHHHHH
Q 008177 166 FAFCMGQLIALTLLVWVQTH----------SGMDIGFGVSAAAMAVGLISLI 207 (575)
Q Consensus 166 ~~~~lg~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~i~~~ 207 (575)
.+..+...+|..++|.+.|- .+|...|.+-++.+++++++..
T Consensus 344 aaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 344 AAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888876542 3466677777776666655543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=62.51 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVE 79 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~ 79 (575)
+-...++...+...+.++++.|++ +.|+|+.++|.+.++..+...++++++|.++||+ ||++.++....++
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 344556666677778899999998 6999999999999999999999999999999997 9998887776654
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.7e-05 Score=81.49 Aligned_cols=176 Identities=10% Similarity=0.013 Sum_probs=114.0
Q ss_pred HHHhhhhhhHHHHHHhhhccCCCh----hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-------HHHHHHHHHHH
Q 008177 14 EMTAIAAVGNNLITYVFNEMHFPL----SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWT-------MLIFGFVELSG 82 (575)
Q Consensus 14 ~~~~~~~~~~~~~~yl~~~~~~s~----~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-------~~~~~~~~~i~ 82 (575)
....+......++.|.++..+-+. -..+++.+...+...+..|+.|++.||+ |||+. +.+++++.+++
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~ 359 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG 359 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence 444555555777778775333211 1234444555566778888899999996 99973 77787877777
Q ss_pred HHHHHHhhc-cCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 83 FILLSVQAH-LPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
.+..+.... ... . ....+.+.+....++.|+|.++..|...+++.+..| ++.++.+.
T Consensus 360 ~~~~~~~~~~~~~-----------~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP---~~~~g~~~ 417 (489)
T PRK10207 360 FLTAAAAGMWFAD-----------A--------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP---QHLMGFIL 417 (489)
T ss_pred HHHHHHHHHhhcC-----------C--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh---HHHHHHHH
Confidence 665432210 000 0 001234556778889999999999999999999999 44499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------c-cchhHHHHHHHHHHHHHHHHHHhcce
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTH---------S-GMDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~---------~-g~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
++++...++|..+|..++...... . .+.+.|...+...++..++++...++
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~ 478 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPW 478 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887655310 1 13445555555444444444444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0045 Score=64.96 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhhhccC------C-----------------ChhhHHHHHHHHHHHHHHHhhhhHHHhh
Q 008177 7 VLGLQAFEMTAIAAVGNNLITYVFNEMH------F-----------------PLSKSANIVTNFIGTVFLLSLFGGFLSD 63 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~------~-----------------s~~~~~~i~~~~~~~~~~~~~~~G~laD 63 (575)
-+....++++.|-.+.+-...-+.++.+ . +....+.+.-+-.+-..+.-+..-++.+
T Consensus 5 fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~ 84 (402)
T PF02487_consen 5 FWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFIH 84 (402)
T ss_pred HHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhhh
Confidence 3445567777776666655555542111 0 1122334555566677777788888899
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhh
Q 008177 64 SYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIIS 143 (575)
Q Consensus 64 ~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~ 143 (575)
|. .-+.=+.+..++.++|.++.+++.+ .+.-+++..+.+++.|.......+
T Consensus 85 ~v-~y~~Ri~~~~~l~~~g~l~va~~~~----------------------------v~~~l~Gv~las~ssg~GE~tfL~ 135 (402)
T PF02487_consen 85 RV-PYWIRILICVALSAAGMLLVAFSPS----------------------------VWVRLLGVVLASLSSGLGEVTFLS 135 (402)
T ss_pred hc-cchHHHHHHHHHHHHHHhheeeccc----------------------------hhHHHHHHHHHhhhhhhhHHHHHH
Confidence 85 6444455556677888888888654 555678888899999998888888
Q ss_pred hhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhc
Q 008177 144 HGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGM--DIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 144 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~--~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
+.+ .+++ ...+-+..+.+.++++|...=-.+.+ .|+ |..+.+..+.-++-++.+++..
T Consensus 136 lt~-~y~~-------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L 195 (402)
T PF02487_consen 136 LTH-FYGK-------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLL 195 (402)
T ss_pred HHH-hcCc-------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 744 4552 12344444666666666665434444 444 6566665554443444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0001 Score=76.00 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
..+.-...+|+..-+--..-++++.|+.+..|++..+++...+.+..+.++++.++-++-.|+ -..|.+.+..+...+-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344555566666555566778899999988999999999999999999999999999999996 8888888777665555
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHH
Q 008177 83 FILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFN 162 (575)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~ 162 (575)
.+..++..+ ..-+.+.++.|+..+.+.|++.+...+..|++. +..|
T Consensus 316 ~~~~~l~~g-----------------------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s 361 (422)
T COG0738 316 LLAVALIGG-----------------------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGS 361 (422)
T ss_pred HHHHHHhcC-----------------------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccc
Confidence 555555432 224455678899999999999999999999332 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 008177 163 VAYFAFCMGQLIALTLLVWVQTHSGMDIGFG 193 (575)
Q Consensus 163 ~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~ 193 (575)
-.-.+..+|+++.|.+-|++.|+.|-...+.
T Consensus 362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred eeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 3333667899999999999999999877766
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=83.37 Aligned_cols=163 Identities=13% Similarity=0.011 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh----cccchHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDS----YLGSFWTMLIFGFV 78 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~----~~Grr~~~~~~~~~ 78 (575)
.+|......++.....|+...++|.|+++..|+|..+++.+...+.++..++.++.|+++|| . .+|........+
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL 352 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 56888889999999999999999999998778999999999999999999999999999999 4 666666665555
Q ss_pred HH-HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh
Q 008177 79 EL-SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL 157 (575)
Q Consensus 79 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r 157 (575)
+. +|.+.+..... ......+-+....+.+...+....-..+...++. + |
T Consensus 353 ~~~~g~~~l~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-k-~ 402 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV----------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-K-A 402 (495)
T ss_pred HHHHHHHHHHhhcc----------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-H-h
Confidence 43 33344443321 1112222222333334444455555555554332 2 3
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHhhcccchhHHHHHH
Q 008177 158 STYFNVAYFAFC-MGQLIALTLLVWVQTHSGMDIGFGVSA 196 (575)
Q Consensus 158 ~~~~~~~~~~~~-lg~~~~~~~~~~l~~~~g~~~~f~~~~ 196 (575)
-+..+.+..+.+ .|.+.+++.-+.....++|...|.+..
T Consensus 403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 444444444443 344444444445556678888885443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-06 Score=86.09 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=109.2
Q ss_pred hhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHH
Q 008177 353 ASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIA 432 (575)
Q Consensus 353 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (575)
..++....++..+..|+.+.+.+ |..|| ..+.+|..++.++.+..+... ..|-+.
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLad----ryNR~-------~v~~vG~~iW~~Av~~~~fs~--------------~Fwq~~ 125 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLAD----RYNRK-------RVIAVGIFIWTLAVFASGFSN--------------HFWQVL 125 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh----hcCcc-------eEEeeHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 45666777778888899988774 54333 448889999998888877663 455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhh
Q 008177 433 PQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRL 512 (575)
Q Consensus 433 i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~ 512 (575)
+.-.+.|+|+....|...+++.+.+|.+.|++..+++++....|..+|......+.+. .+| +
T Consensus 126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~--------~~~----------W 187 (493)
T KOG1330|consen 126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL--------TFW----------W 187 (493)
T ss_pred HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC--------ccc----------e
Confidence 7779999999999999999999999999999999999999999988887766665432 121 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 513 DLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 513 ~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
.+.|+..++++++..++..++.++..
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 34577888888888777776665443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00032 Score=75.83 Aligned_cols=204 Identities=9% Similarity=-0.116 Sum_probs=142.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhh-ccCCChh------hH---H-HHHHHHHHHHHHHhhhhHHHhhhcccc-
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFN-EMHFPLS------KS---A-NIVTNFIGTVFLLSLFGGFLSDSYLGS- 68 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~~~s~~------~~---~-~i~~~~~~~~~~~~~~~G~laD~~~Gr- 68 (575)
+|.++.++.++++..++++.+..+...|+.+ .++-++. +. | +....+.+...+.+++--++.+|+ |+
T Consensus 257 P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-g~~ 335 (477)
T TIGR01301 257 PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-GAG 335 (477)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 3678899999999999999999999999875 3443321 11 2 333345555567777778889996 95
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhccc
Q 008177 69 FWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQ 148 (575)
Q Consensus 69 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 148 (575)
|++..++.++.+++.....+.+++++. ..+.|+-|..-.+........++.-.+.|+..+.....-.+++++.
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~ 408 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKN-------SRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR 408 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhc-------cccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 777799989888888888765532210 0001111111122222234455666788999999999999999999
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhccee
Q 008177 149 FKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSG--MDIGFGVSAAAMAVGLISLIFGIFVY 213 (575)
Q Consensus 149 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~i~~i~~~~~~~~~ 213 (575)
.++++ ++.|.++|+++.+..+.+.+..+..|.+.+..| -.+.+.++++.++++.+..++..|+.
T Consensus 409 ~~~~~-~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 409 SSNLG-AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred ccccC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88543 337999999999999999999988887655554 45678888888888888777766643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.047 Score=58.26 Aligned_cols=188 Identities=11% Similarity=-0.081 Sum_probs=103.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+|..+.+....++....--++-...++|+.+-+.-+.--.+..--.-.+...+..+..|.+.||. .|.+++..+.+..-
T Consensus 1 ~~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn 79 (432)
T PF06963_consen 1 KRALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQN 79 (432)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHH
Confidence 35566677777777777777777788888766543444444444444566777888899999996 99999988887644
Q ss_pred HHHHHHHHh----hccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCc---cc
Q 008177 81 SGFILLSVQ----AHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKK---QE 153 (575)
Q Consensus 81 i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~---~~ 153 (575)
++..+.+.. ...+. ...+ ........+.+..++..+..=+......+.=-||... ++
T Consensus 80 ~sv~~s~~~~~~l~~~~~------------~~~~----~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~ 143 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPS------------SSSQ----SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGD 143 (432)
T ss_pred HHHHHHHHHHHHHHhCCc------------cccc----cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCC
Confidence 443333321 11110 0000 0111222222222222222222223333333455431 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 008177 154 SKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLIS 205 (575)
Q Consensus 154 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~ 205 (575)
+..+.+..+...=.=-+--+++|++.|.+....+.....++.+...++++..
T Consensus 144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 3335554444333334567889999999988888877666655555555444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=82.18 Aligned_cols=156 Identities=14% Similarity=0.009 Sum_probs=123.8
Q ss_pred hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 008177 21 VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPC 100 (575)
Q Consensus 21 ~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (575)
+.+++--+++ +++-.+.--|-....-..+-.+.-++.+++..|+ |+-+++.+++..+.+=++..+...|
T Consensus 390 v~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~n--------- 458 (618)
T KOG3762|consen 390 VFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQN--------- 458 (618)
T ss_pred HHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhcC---------
Confidence 4444444444 5665555555444444556677788889999996 9999999999999999999998765
Q ss_pred CCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH-HHHHHHHHHHHH
Q 008177 101 NMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA-FCMGQLIALTLL 179 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lg~~~~~~~~ 179 (575)
+|+.+..-+++|+..+.+..++.+|+++..|++- |.++-++.+.. ..+|-.+|.+++
T Consensus 459 -------------------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l---~at~Q~l~~g~f~GlG~g~GslIG 516 (618)
T KOG3762|consen 459 -------------------PWMVLPIEILQGITHALIWAAIISYASHVAPPGL---RATAQGLLQGIFHGLGKGLGSLIG 516 (618)
T ss_pred -------------------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc---hHHHHHHHHHHhcccCcchhhhhh
Confidence 7778888999999999999999999999999544 88888886554 488899999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008177 180 VWVQTHSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 180 ~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
|.+.+.+|-|..|.+.++.+++.++.+...
T Consensus 517 G~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 517 GFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred hhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888777766655543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00033 Score=77.10 Aligned_cols=147 Identities=15% Similarity=0.008 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|+..+.+.++.+..++.+....+....+.+..|.+... .+..........++..++.++.||+ |||+.++.+.+.+.+
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~ 371 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSI 371 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHH
Confidence 34455566666666665555555555556677776554 4444555666777778889999996 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++....... ++.+......+..+....+.+.....+..|....+.+|.+| .+.|+++.
T Consensus 372 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp---~~~r~~~~ 433 (513)
T KOG0254|consen 372 CLVILAVVGVFAL---------------YYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFP---LRLRSKGA 433 (513)
T ss_pred HHHHHHHHHHHhc---------------cCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCc---HhHHhhhH
Confidence 9999887643111 00001111122222222223333334445566678899999 55588888
Q ss_pred HHHHHHH
Q 008177 162 NVAYFAF 168 (575)
Q Consensus 162 ~~~~~~~ 168 (575)
++.....
T Consensus 434 s~~~~~n 440 (513)
T KOG0254|consen 434 SLAVAVN 440 (513)
T ss_pred HHHHHHH
Confidence 8844433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=76.49 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=72.5
Q ss_pred hccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHH
Q 008177 355 LQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQ 434 (575)
Q Consensus 355 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 434 (575)
+.........+..++.+++.||+. ++| +.+.+|.++..++.+++.... .....+.+.
T Consensus 50 i~~~~~~~~~l~~ligG~LaDRil---Grr-------r~iliG~il~~lg~lll~~~~-------------~~~~~~~l~ 106 (493)
T PRK15462 50 LFSAYCSLVYVTPILGGFLADKVL---GNR-------MAVMLGALLMAIGHVVLGASE-------------IHPSFLYLS 106 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---CcH-------HHHHHHHHHHHHHHHHHHHhh-------------cchhHHHHH
Confidence 333444444555666666665441 322 346777777777765543221 111223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008177 435 FLIFGLSEMFTAVGLIEFFYKQSLEG--MQSFLTAMTYCSYSFGFYLSSLLVSLVN 488 (575)
Q Consensus 435 ~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~l~~~i~ 488 (575)
..+..++.+...+...+++.|.+|++ .|.++.++.+...++|+.++|.+.+.+.
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666676778899999986 7999999999989999999999998874
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.8e-05 Score=77.80 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHHHHHH-HHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSY---LGSFWTMLIFG-FVEL 80 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~~~~-~~~~ 80 (575)
..+..+.+...+.+-.=.+++++|++ ++|.+-+..+.+-...-+...+.+|+-|..+||. +||||.++... +..+
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 34444444555555555788889987 8999999999888888888999999999999984 58877665554 4577
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.+++.+++++.... |.+.+ +..+.....+++++-.+.=+..-..+..+-++.+|...++++++| +
T Consensus 114 ~~l~Lig~aaDig~~l---gd~~~--------~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--A 180 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLL---GDNER--------KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--A 180 (498)
T ss_pred HHHhhhhhHhhhhHHh---cCCcc--------cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--c
Confidence 8888888887643321 11111 013334456666666666677778888899999999987665544 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVW 181 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~ 181 (575)
.+++.....+|..+|...+++
T Consensus 181 ns~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 181 NSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred chhHHHHHHhcceeeeecccc
Confidence 888888999999999888774
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.7e-05 Score=80.15 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHH----HHH----HHH-HHHHHHhhhhHHHhhhcccchHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSAN----IVT----NFI-GTVFLLSLFGGFLSDSYLGSFWTML 73 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~----i~~----~~~-~~~~~~~~~~G~laD~~~Grr~~~~ 73 (575)
..+.....+|..++++|+...+...-++ .+++.+.+... -++ ... .++..+-.+..++.|+. |||++.+
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq~ 382 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQL 382 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHHH
Confidence 4455677788899999998777665554 55655544443 111 111 12233566777889995 9999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccc
Q 008177 74 IFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQE 153 (575)
Q Consensus 74 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 153 (575)
.+++++++..+.++..-+- .+ +. ...+...-+.+-++.-+-..+...+-+|.||
T Consensus 383 ~GF~~~~i~~~~~~~~y~~--------------------~~-~~--~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FP--- 436 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYNQ--------------------LE-NT--IGFVVLYSLTFFFGNFGPNATTFIVPAEIFP--- 436 (538)
T ss_pred hhHHHHHHHHHHHcCCccc--------------------cc-cc--CceeehHHHHHHHHhcCCCceeEEeehhhch---
Confidence 9999999988888875330 01 11 1111122222334444455566777889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----cccchhHHHHHHHHHHHHHHHHHH
Q 008177 154 SKKLSTYFNVAYFAFCMGQLIALTLLVWVQT-----HSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 154 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~-----~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
.+.|+...++...+.-+|+++|.....++.+ ..|.+..|++.+..++++.+..++
T Consensus 437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 6679999999999999999999999999998 678899999998888877665444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00044 Score=77.95 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhccc--chHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIG-TVFLLSLFGGFLSDSYLG--SFWTMLIFGFVE 79 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~G--rr~~~~~~~~~~ 79 (575)
.++......++....++++..++|.|+++++|+++.+++++.+...+ +..++.+++|+++||+ + .|+++..++++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 46677778888999999999999999999999999999999988776 6789999999999996 7 457777777777
Q ss_pred HHHHHHHHHhh------------ccC------CCCCC-CCCCC-------C----CCC----------------------
Q 008177 80 LSGFILLSVQA------------HLP------QLRPS-PCNML-------T----DTD---------------------- 107 (575)
Q Consensus 80 ~i~~~~~~~~~------------~~~------~~~~~-~~~~~-------~----~~~---------------------- 107 (575)
.++.++..... +.| ..... +||.- | ++|
T Consensus 410 ~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~ 489 (633)
T TIGR00805 410 TLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNM 489 (633)
T ss_pred HHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcc
Confidence 77655533100 000 00111 34432 1 111
Q ss_pred CCCcc----------------ccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHH-HH
Q 008177 108 GTQNC----------------QEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAF-CM 170 (575)
Q Consensus 108 ~~~~~----------------~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~l 170 (575)
.+++| ...=......+++..++..+..+.........+-...|+++ |+-+.|+..+.. -+
T Consensus 490 ~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~---rs~alg~~~~~~rll 566 (633)
T TIGR00805 490 VYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE---KSLAIGLQWLCMRVF 566 (633)
T ss_pred eecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc---chHHhhHHHHHHHHh
Confidence 13343 11111123344444444445445545555567778889777 999999955554 67
Q ss_pred HHHHHHHHHHHHhhc
Q 008177 171 GQLIALTLLVWVQTH 185 (575)
Q Consensus 171 g~~~~~~~~~~l~~~ 185 (575)
|.+-+|++-|++.|.
T Consensus 567 g~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 567 ATIPAPILFGLLIDV 581 (633)
T ss_pred cCCChhHHHhhhhhc
Confidence 888899998888774
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=68.84 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=82.5
Q ss_pred cchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHH
Q 008177 357 AIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFL 436 (575)
Q Consensus 357 ~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 436 (575)
......-.+.....+.+.| |+ +.++.+.++++..++..++.++.. +...+.+.-+
T Consensus 69 s~F~ysYal~qIp~GlLaD----rl-------G~K~vL~l~~l~Wsl~t~L~~fa~--------------Sl~~L~i~R~ 123 (511)
T TIGR00806 69 PVLPYSHLAVLVPVFLLTD----YL-------RYKPVLVLQALSFVCVWLLLLLGT--------------SVWHMQLMEV 123 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH----Hh-------CchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 3333444455555555554 43 233557888888888888777763 5667788889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008177 437 IFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLV 487 (575)
Q Consensus 437 l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i 487 (575)
++|++++... ....++++.+|+++|++++|..+....+|..+++.+.+.+
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 8899999999999999999999999999999999999884
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.4e-07 Score=98.71 Aligned_cols=183 Identities=17% Similarity=0.058 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
...+.+..+..+..+....+...++.+..+.++. -.......+...++.+++.++.||+ |||+.++.+.++.+++.+
T Consensus 255 ~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~ 331 (451)
T PF00083_consen 255 LIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSL 331 (451)
T ss_pred cccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 3334444444455545555556666677777776 2222233455666777778999996 999999999998888877
Q ss_pred HHH-HhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 85 LLS-VQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++ .....+. ..+..+...+............+..+....+.+|.+|.+. |+++.++
T Consensus 332 ~~~~~~~~~~~-------------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~---R~~~~~~ 389 (451)
T PF00083_consen 332 ILGIIFFLGVS-------------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV---RSTGIGL 389 (451)
T ss_pred ccccccccccc-------------------cccccccccceeeeeccccccccccccccccccccccccc---ccccccc
Confidence 775 1110000 0000011111111111112222445666788899999554 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcce
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
.+....+++.+++.+...+.+..+-...|.+.+...++..+...+..|+
T Consensus 390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 8888889999888887777776662334555444444455444444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0005 Score=70.30 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=82.0
Q ss_pred hhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHH
Q 008177 353 ASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIA 432 (575)
Q Consensus 353 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 432 (575)
+.+++...+...+..++.+.+.|++ +||+ .+.++.+..+++.++.+... +....+
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~y----GRkp-------vll~c~~~va~s~ll~~~S~--------------~F~afv 125 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRY----GRKP-------VLLACLIGVALSYLLWALSR--------------NFAAFV 125 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhh----CchH-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 3455666667777778887776544 4443 36667777777777666542 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008177 433 PQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNK 489 (575)
Q Consensus 433 i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~ 489 (575)
..-++.|+.-+-..+. .++++|.+++++|+.+++..++..++|..+||++.+++..
T Consensus 126 ~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3467888888877765 8999999999999999999999999999999999998765
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=70.86 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 008177 392 QRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYC 471 (575)
Q Consensus 392 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~ 471 (575)
..+.+|.++.+++.++.+.... .....+.+.+.+..++.|++.+...+.....+.+.+| +.||++.|+...
T Consensus 92 ~vllig~ll~~iG~ll~ala~~--------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~ 162 (591)
T PTZ00207 92 PIFVLSMTVFCLGTLLFALTFQ--------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKT 162 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHH
Confidence 5588888999888887776520 0011356666777788999998888888888899997 679999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 008177 472 SYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSR 535 (575)
Q Consensus 472 ~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 535 (575)
...+|+.+.+.+...+.. .+...+|++++.+.++..++.+.+.+
T Consensus 163 ~~gLGsaI~~~l~~~l~~--------------------~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 163 FTGLGSAILGSIQLAFFS--------------------DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHHHH--------------------HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999865555443321 11234567777777666555555544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=72.34 Aligned_cols=139 Identities=9% Similarity=0.167 Sum_probs=92.8
Q ss_pred ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHH
Q 008177 351 PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFW 430 (575)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (575)
...++.....+......|+.+++.|.++||. .+..|.++..++.++.+... +...
T Consensus 79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA~--------------~~~~ 133 (599)
T PF06609_consen 79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATAQ--------------NMNT 133 (599)
T ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcCC--------------cHHH
Confidence 3456777777888888888888886666553 26777778888887766542 4445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchh
Q 008177 431 IAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKD 510 (575)
Q Consensus 431 l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~ 510 (575)
++....+.|+|.+.... ....+.|..|.+.|+.+.++...........++.+...+. .+.+|
T Consensus 134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~--------~~~~W--------- 195 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA--------AHSGW--------- 195 (599)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc--------cCCCc---------
Confidence 56677888888766554 3556899999999998888766555555555665554432 12235
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 511 RLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 511 ~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
-+.|++.+.+..++++...++.
T Consensus 196 --Rw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 196 --RWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred --chHHHHHHHHHHHHHHHHHHHh
Confidence 3566776776666666555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0034 Score=67.29 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=104.8
Q ss_pred hhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHH
Q 008177 354 SLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAP 433 (575)
Q Consensus 354 ~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 433 (575)
+..+...++..+..+.++.+- .|.+ +.++.+.+|.+++.++-+++...+.. ++...+++.+
T Consensus 75 ~viaa~slg~~i~~liF~~Ws----~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~---------~~~~~y~mL~ 135 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWS----NKTG------SVKKPLIVSFLIAIIGNLLYLALAYV---------PNGVKYLMLV 135 (488)
T ss_pred HHHHHHHHHHHhcchhhcccc----cccC------CcccCHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHH
Confidence 344445566666777766543 2322 12334899999999999888655410 1125667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhH
Q 008177 434 QFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLD 513 (575)
Q Consensus 434 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~ 513 (575)
..++.|+|.+-... .-.|++...-.+.|.++++..+....+|..+||.+-..+......+ ..|.++-.+| .+.
T Consensus 136 ~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G----~~i~~~~~~n--~YT 208 (488)
T KOG2325|consen 136 ARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG----FMILPGLIFN--MYT 208 (488)
T ss_pred HHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc----eEEcCcceEE--ecc
Confidence 88999998776554 5888888777888888888887777788888887776665554433 2233311123 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 008177 514 LFYWLLAALSLINFFNYLFWSRWYSYN 540 (575)
Q Consensus 514 ~~f~i~~~~~~~~~~~~~~~~~~~~~~ 540 (575)
..-|+.+.+.++.+++..++.++..++
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhheeecccC
Confidence 445777888888888877777665443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0065 Score=55.37 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHH
Q 008177 44 VTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALIL 123 (575)
Q Consensus 44 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (575)
.++......+.+++.+.+.+++ |.|+.++++.+.+.+-....-. .+...+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~~~l 92 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNSYTL 92 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhHHHH
Confidence 3444555667777888889995 9999999999987754433322 225678
Q ss_pred HHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 124 YLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 124 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
+++-.+.|++.+........++.+..+++ .|++..+++....+.+.++|.++.-.+
T Consensus 93 ~~~s~l~G~~~a~lW~aqg~ylt~~s~~~---~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 93 YPASALLGFGAALLWTAQGTYLTSYSTEE---TIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHhhhhHHhhHhhhHHHHHcCCHH---HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988844 488888888777788888777664443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=51.22 Aligned_cols=73 Identities=8% Similarity=-0.063 Sum_probs=62.9
Q ss_pred HHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008177 14 EMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAH 91 (575)
Q Consensus 14 ~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~ 91 (575)
.+|+| ++.+| .++++.++|.++.+++.+...+|+.++.+...++.++. .+++.+..++++..+....+++.++
T Consensus 7 gRFay---TplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 7 GRFAY---TPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHH---HhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45554 45555 56679999999999999999999999999999999995 8899999999999999999998754
|
Note that many members are hypothetical proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.34 Score=50.11 Aligned_cols=56 Identities=7% Similarity=-0.014 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008177 434 QFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNK 489 (575)
Q Consensus 434 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~ 489 (575)
.+.+.+......+...+++.++++|+...|+.|.+.|+.+++|+.--..+...+.|
T Consensus 375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 45666666666777888999999999999999999999999987665555555544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.073 Score=58.63 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=82.2
Q ss_pred hccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCC
Q 008177 31 NEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQ 110 (575)
Q Consensus 31 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (575)
..+|.+..-...+.+. .........+.+-|++ |||.....+.++..++.+..++...-.
T Consensus 346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 404 (521)
T KOG0255|consen 346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDDL----------------- 404 (521)
T ss_pred hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhccc-----------------
Confidence 3455544444433333 4444555558999996 999999999999999999998864311
Q ss_pred ccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 111 NCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 184 (575)
......+...+...+.+...-....+.+|.+|. ..|..+.+.......+|.+++|.+......
T Consensus 405 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt---~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 405 --------GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT---VVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 101222223333333444445558889999994 449999999999999999999998654443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=61.45 Aligned_cols=183 Identities=13% Similarity=0.033 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGF 83 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~ 83 (575)
+.+++....+.-..+|+....+-.-+. .-|.+...+|++.....++.++++.+.|.++||.-.-|.++++......++.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444444455555555555543333 4466678899999999999999999999999997444566666666655553
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
..+....+.+. . .+.++..-.+.|...-+..|...-+..|..-|.. -+.-.|+
T Consensus 347 ~~l~~~t~~~~-----------------------~-~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~---E~tSsGl 399 (480)
T KOG2563|consen 347 LMLLTCTLFLG-----------------------D-SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA---EGTSSGL 399 (480)
T ss_pred HHHHHhhccCC-----------------------c-eEehhhhHHHHHHhhcCCCCcceeeeeeeccccC---Cccccee
Confidence 22222111111 1 2234555566787778888888888888764432 2344555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc----chhHHHHHHHHHHHHHHHHHHhcceee
Q 008177 164 AYFAFCMGQLIALTLLVWVQTHSG----MDIGFGVSAAAMAVGLISLIFGIFVYR 214 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~~~g----~~~~f~~~~~~~~i~~i~~~~~~~~~~ 214 (575)
.....++-+.+-..+-+...+..+ |...-+.....+++++++..+.++.++
T Consensus 400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 444444444444455555555554 332333333344445555555555543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=62.63 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=106.6
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhH-HHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 008177 24 NLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGG-FLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNM 102 (575)
Q Consensus 24 ~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G-~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (575)
.+..|+...+++++++.+...+.......+++.+.. .+.-. +|-|+++.+|+....+.....+++.+
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~~----------- 330 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFATE----------- 330 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhcc-----------
Confidence 557889999999999999999999999999988888 56666 59999999999999999999999865
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008177 103 LTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWV 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 182 (575)
.++++....+.++ .+...|...+.++.+.+++| +++.+++....-++...++|.+-+.+
T Consensus 331 -----------------~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e---~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 331 -----------------TWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE---QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred -----------------chhhhHHHHHHHh-hcchhHHHHhHHHhhccccc---ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 4556666555444 56778999999999999666 99999999999999999998886665
Q ss_pred h
Q 008177 183 Q 183 (575)
Q Consensus 183 ~ 183 (575)
.
T Consensus 390 ~ 390 (463)
T KOG2816|consen 390 F 390 (463)
T ss_pred H
Confidence 3
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.14 Score=56.35 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH-HHH-HHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIF-GFV-ELSGF 83 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~-~~~-~~i~~ 83 (575)
.+....|+..++.-++-......++.-+|-+..+.+.+++.+.++..+|+.++|+++++- -|+....-. ..+ ..++.
T Consensus 18 ~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~ 96 (521)
T PRK03612 18 LLLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 445555666677666777777777878899999999999999999999999999887553 333222111 111 11111
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
.++.....+. ......++...++.++-.|+..|....+..+... ++-++..|-
T Consensus 97 ~ll~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~----~~~g~~~g~ 149 (521)
T PRK03612 97 LILYAAFAFQ-----------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD----QHLGHNVAT 149 (521)
T ss_pred HHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhh
Confidence 1111111000 0011223333445667777777776666554322 113556777
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cccc-hhHHHHHHHHHHHHHHHHHH
Q 008177 164 AYFAFCMGQLIALTLLVWVQT-HSGM-DIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~~-~~g~-~~~f~~~~~~~~i~~i~~~~ 208 (575)
.|....+|+++|.++.+++.- ..|- +..+.++.+..+++++.++.
T Consensus 150 ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~ 196 (521)
T PRK03612 150 VLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL 196 (521)
T ss_pred hHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999887643 5674 44444444444445444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.22 Score=56.06 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhc-ccchHHHHHHHHHHHH
Q 008177 4 AVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIG-TVFLLSLFGGFLSDSY-LGSFWTMLIFGFVELS 81 (575)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~-~Grr~~~~~~~~~~~i 81 (575)
+...+....++..++-|+.+++|.||.++++.+++.++.+.+...+ +..++..++|++..|+ +..|.+..+.++...+
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999988766 5678999999999987 4456666666655555
Q ss_pred HHHHHHHh-----------------hccCCCCCCC-----CC-------CCC----CCCC--------------------
Q 008177 82 GFILLSVQ-----------------AHLPQLRPSP-----CN-------MLT----DTDG-------------------- 108 (575)
Q Consensus 82 ~~~~~~~~-----------------~~~~~~~~~~-----~~-------~~~----~~~~-------------------- 108 (575)
..+....- .+.|...... || +.| +++|
T Consensus 474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~ 553 (735)
T KOG3626|consen 474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG 553 (735)
T ss_pred HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence 44442110 0112222212 43 222 1221
Q ss_pred ---CCcccccc------------------chhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHH
Q 008177 109 ---TQNCQEAK------------------GYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFA 167 (575)
Q Consensus 109 ---~~~~~~~~------------------~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 167 (575)
++||+=.. ......+++..++..+-.+...+....++-...++++ |+-++|+..+.
T Consensus 554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~---ks~AlG~~~~~ 630 (735)
T KOG3626|consen 554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE---KSFALGFQWML 630 (735)
T ss_pred ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh---chhhhHHHHHH
Confidence 22442111 1123334343444444444555666777888889777 99999995555
Q ss_pred -HHHHHHHHHHHHHHHhhc
Q 008177 168 -FCMGQLIALTLLVWVQTH 185 (575)
Q Consensus 168 -~~lg~~~~~~~~~~l~~~ 185 (575)
.-+|.+=+|++-|++.|.
T Consensus 631 irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 631 IRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHhcCCchHhhhhhHhh
Confidence 478888899999998864
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.19 Score=49.60 Aligned_cols=91 Identities=8% Similarity=0.030 Sum_probs=64.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 008177 389 SPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM 468 (575)
Q Consensus 389 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~ 468 (575)
++...+.+|.+...+++......... .-...+.|.+.+..++.+.+....+........+.+|. .||++.|+
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~-------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgi 135 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSG-------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGI 135 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC-------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehh
Confidence 45556788888888888776554311 11124556666555666677777666666777799985 79999999
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 008177 469 TYCSYSFGFYLSSLLVSLV 487 (575)
Q Consensus 469 ~~~~~~lg~~lg~~l~~~i 487 (575)
.-....+++.+-+.+...+
T Consensus 136 lk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 136 LKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred hhHHHHhHHHHHHHHHHHH
Confidence 9999999988888776555
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.075 Score=60.02 Aligned_cols=64 Identities=27% Similarity=0.473 Sum_probs=58.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008177 423 NQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSL 486 (575)
Q Consensus 423 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~ 486 (575)
....+.+|.++++++.++++.+......++.++++|+++|+.+++++.+...+|+.+...+...
T Consensus 560 ~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~ 623 (654)
T TIGR00926 560 VNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF 623 (654)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999999999999999999999999999999988876543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.16 Score=53.31 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---hHHHHHHHH
Q 008177 393 RVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEG---MQSFLTAMT 469 (575)
Q Consensus 393 ~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~---~rg~~~g~~ 469 (575)
.+.+|.++..++.+++..... +...+.......+.+.+.+.++|.++.-|...++..++++++ .|......+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~-----~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~f 77 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI-----PPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWF 77 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT-----SSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHh-----cchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHH
Confidence 467777888888777554420 001112223455677888899999999999999999999987 455566666
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008177 470 YCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYS 538 (575)
Q Consensus 470 ~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~ 538 (575)
...-++|..++....+++.+ +.++...|++.++..+++.+.++.-.++++
T Consensus 78 Y~~in~G~~~~~~~~~~i~~-------------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~ 127 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQ-------------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYR 127 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHH-------------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT-
T ss_pred HHHHhhhhHhhcccchhhcc-------------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCc
Confidence 77778888888887777632 233445676766666666665554433333
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.0068 Score=66.89 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhc-ccchHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIG-TVFLLSLFGGFLSDSY-LGSFWTMLIFGFVELSG 82 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~-~Grr~~~~~~~~~~~i~ 82 (575)
........++.+..-|+.+++|.|++.+|+.++++++++.+...+ +..++.+++|++..|+ ++.|+++....+...++
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 344555667888899999999999999999999999999988766 6779999999999997 34566666666655555
Q ss_pred HHHHHHh-----hccC-----------------CCCCCCCCCCCCC----CCCCccccccchhHHHHHHHHHHHHHcccc
Q 008177 83 FILLSVQ-----AHLP-----------------QLRPSPCNMLTDT----DGTQNCQEAKGYKALILYLALYLVALGSGC 136 (575)
Q Consensus 83 ~~~~~~~-----~~~~-----------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~ 136 (575)
.++.... ++.| ......||.-... ...-.|...-..+...+++..++..+..+.
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 4441110 0000 0111122220000 011122111112345555555555555555
Q ss_pred cccchhhhhcccCCccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 008177 137 LKPNIISHGADQFKKQESKKLSTYFNVAYFA-FCMGQLIALTLLVWVQTH 185 (575)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~lg~~~~~~~~~~l~~~ 185 (575)
.........-...++++ |+-+.|+.... --+|.+=||++-|.+.|+
T Consensus 468 ~~~p~~~i~LR~V~~~~---rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQ---RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------
T ss_pred cccchheeeeccCChhh---cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 55555566668888666 99999985544 467888899998888764
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.91 Score=48.60 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=108.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008177 9 GLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSV 88 (575)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~ 88 (575)
....+..+..-+.-..+..|+..+ |+++..+|..-+.-.+....+.....++.+|+ |..|+=++++....+...++..
T Consensus 265 ~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~ 342 (432)
T PF06963_consen 265 FALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVV 342 (432)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHH
Confidence 333344444555677888999876 99999999999999999999999999999996 9999999999987777776665
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHH
Q 008177 89 QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAF 168 (575)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 168 (575)
+-..|.- ..+..+...++.+..+-=+|.=+.-....-++-|..|+++ |+...+.-....
T Consensus 343 ~~~~~~~------------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~---Rg~v~gvq~sl~ 401 (432)
T PF06963_consen 343 SFWAPGS------------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE---RGAVSGVQNSLQ 401 (432)
T ss_pred HHhcCCC------------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH---hhHHHHHHHHHH
Confidence 5332320 0012334444444444335555666777888999999666 999999988888
Q ss_pred HHHHHHHHHHHH
Q 008177 169 CMGQLIALTLLV 180 (575)
Q Consensus 169 ~lg~~~~~~~~~ 180 (575)
++--.+-..++-
T Consensus 402 ~lf~ll~~~~~i 413 (432)
T PF06963_consen 402 SLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHh
Confidence 888877766643
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.59 Score=50.15 Aligned_cols=151 Identities=15% Similarity=-0.010 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhhcccch-------HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCc
Q 008177 39 KSANIVTNFIGTVFLLSLFGGFLSDSYLGSF-------WTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQN 111 (575)
Q Consensus 39 ~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (575)
..+|.-+.-.+...+.+|+..++--+. +++ .-+-+++++...+++++..... +.
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~------------------~~ 385 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGI------------------WF 385 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH------------------hh
Confidence 344555555566666666666666663 443 2344555566666666655411 00
Q ss_pred cccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH------Hhhc
Q 008177 112 CQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVW------VQTH 185 (575)
Q Consensus 112 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~------l~~~ 185 (575)
-++....+.+.++...+++++|.=+..|...++++...| +.-.+..++.+......|..++..+.+. ..+.
T Consensus 386 ~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP---~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~ 462 (498)
T COG3104 386 GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP---PALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTA 462 (498)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhh
Confidence 111223457778899999999999999999999999999 5558899999888888888888777663 2233
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcc
Q 008177 186 SGMDIGFGVSAAAMAVGLISLIFGIF 211 (575)
Q Consensus 186 ~g~~~~f~~~~~~~~i~~i~~~~~~~ 211 (575)
......|+..+...++..+.++...|
T Consensus 463 ~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 463 FIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 34555666666655544444444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.86 Score=49.03 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 008177 366 VVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFT 445 (575)
Q Consensus 366 ~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~ 445 (575)
.-|+.+.+.|.+--+ +. +++..+.++.++..++...++.... ...+........++..+|..+.
T Consensus 40 ~Kp~~g~lsD~~pi~-G~-----rr~~Y~~i~~~~~~~~~~~~~~~~~----------~~~s~~~~~~~l~la~~g~a~~ 103 (433)
T PF03092_consen 40 IKPLYGLLSDSFPIF-GY-----RRKPYMIIGWLLGAVSALVLALLPA----------SESSAAIAVVLLFLASFGYAFA 103 (433)
T ss_pred HhhhHHhhccccccc-CC-----cchHHHHHHHHHHHHHHHHHHhccc----------ccchhhhHHHHHHHHHHHHHHH
Confidence 455666666543211 11 1223466677777666665555431 1122333444556677788887
Q ss_pred HHHHHHHHHhhc---chhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHH
Q 008177 446 AVGLIEFFYKQS---LEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAAL 522 (575)
Q Consensus 446 ~~~~~~~~~~~~---P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~ 522 (575)
....-+...|.. |.+ ||..++.......+|+.++..+.|...+..+. ...|.+.+.+
T Consensus 104 DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~-------------------~~~f~i~~~~ 163 (433)
T PF03092_consen 104 DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP-------------------QGVFLISAAL 163 (433)
T ss_pred HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC-------------------eEEehHHHHH
Confidence 777777777665 444 88889998889999999999888877542221 1245666666
Q ss_pred HHHHHHHHHHhhcc
Q 008177 523 SLINFFNYLFWSRW 536 (575)
Q Consensus 523 ~~~~~~~~~~~~~~ 536 (575)
.++..+..+++.++
T Consensus 164 ~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 164 PLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHhhhh
Confidence 66665555555544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.64 E-value=2.3 Score=38.70 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008177 427 SIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLV 487 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i 487 (575)
+.+.+++.-++.|++.+....+.-.++.+..+++.|++-.++.......+..+|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999888889999999999999999999888888877777655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.54 E-value=14 Score=40.47 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCC-----C-
Q 008177 36 PLSKSANIVTNFIG-TVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTD-----G- 108 (575)
Q Consensus 36 s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 108 (575)
.+..+..+-....+ ...+...+-.+++|++ +|.+++-+....+..-+.+.++.- .|. ++.+.... -
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vl-yP~-----~~~lhp~~~~~~~~~ 128 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVL-YPN-----RDILHPDAFADKLLA 128 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH-hhc-----hhhcCCCHHHHHhhh
Confidence 44555555554444 4455577889999996 999998888877777777777642 111 11111000 0
Q ss_pred --CCccccc-cchhHHHHHHHHHHHHHcccc-cccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 109 --TQNCQEA-KGYKALILYLALYLVALGSGC-LKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQT 184 (575)
Q Consensus 109 --~~~~~~~-~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 184 (575)
..+.+.. .-.+.|.+.+.-+..-+-... ..-....+..|.++.+| -.+.++++..+.|+|.+++..+..++.+
T Consensus 129 ~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e---AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 129 ILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE---AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000112121222222221112 22245788899999666 6788999999999999999998888877
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.22 E-value=3 Score=44.83 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=76.7
Q ss_pred HHHHHHHhhhhHHHh---hhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHH
Q 008177 48 IGTVFLLSLFGGFLS---DSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILY 124 (575)
Q Consensus 48 ~~~~~~~~~~~G~la---D~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (575)
..+..++..+.+.++ +++ ||++++.++..+..++.++.-+.. |. |-- ...|+......+++..+..
T Consensus 289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~~--p~-------dap-~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLSF--PN-------DAP-LRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhccc--cc-------cCC-CCCCcccccccccchhHHH
Confidence 344555556666665 455 999999999999888888877652 21 110 1112222222333455666
Q ss_pred HHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 125 LALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 125 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
+.-++.|++-++.......++++.+| ++ |..+++++-+-..++..++...
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~-~~---~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYP-DD---RAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhc-Cc---hHHHHHHHHHHHHHHHHHHhhh
Confidence 77788999999999999999999994 34 6777887666666666655444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.81 E-value=1.3 Score=46.80 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH--HHHHHH
Q 008177 6 FVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGF--VELSGF 83 (575)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~--~~~i~~ 83 (575)
.+..+.++|.+...|+.+-+.. ..+..-...+-.+....|.+|.++++--.-.+ |+ |+..+.+.+ +..+..
T Consensus 251 PL~lVY~aEY~InqGv~~tl~f--p~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri---r~lwils~LQ~~nl~~~ 323 (402)
T PF02487_consen 251 PLFLVYFAEYFINQGVAPTLLF--PNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI---RRLWILSLLQVINLVFL 323 (402)
T ss_pred HHHHHHHHHHHHHhchHHHhcC--CccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh---hhHHHHHHHHHHHHHHH
Confidence 4555666676666666554431 22233334667778888888888876543322 32 444444333 333333
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHH
Q 008177 84 ILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNV 163 (575)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 163 (575)
++.+.-..+| +.+..++..+..|+-.|+.+++....+.|..|+++ |.-.++.
T Consensus 324 ~l~s~~~fip-------------------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~---REFslg~ 375 (402)
T PF02487_consen 324 LLQSWYRFIP-------------------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED---REFSLGA 375 (402)
T ss_pred HHHHHHHHhh-------------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH---HHHHHHH
Confidence 3333332222 25666677778999999999999999999888555 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008177 164 AYFAFCMGQLIALTLLVWVQ 183 (575)
Q Consensus 164 ~~~~~~lg~~~~~~~~~~l~ 183 (575)
..++-.+|..++..++-++.
T Consensus 376 vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 376 VSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888999988888765543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.4 Score=46.85 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=82.3
Q ss_pred hhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc----ccH
Q 008177 353 ASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQI----LSI 428 (575)
Q Consensus 353 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~ 428 (575)
+......++..++.+|+.+...|+--.|++||. |. +..+.+...+++.++++....-. .-.++... -++
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR----Pf--I~~~s~~i~~~l~Lig~aaDig~-~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR----PF--ILAGSLLIAVSLFLIGYAADIGL-LLGDNERKPVKPRAI 142 (498)
T ss_pred cccccccccccceeccccccccccccccccccc----ch--HHHhhHHHHHHHhhhhhHhhhhH-HhcCCcccccchHHH
Confidence 445667778888999999999998888888773 22 45555556666666655532111 00011111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH-HHHHHHHHHhHHHHHHHHHHHH
Q 008177 429 FWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSF-LTAMTYCSYSFGFYLSSLLVSL 486 (575)
Q Consensus 429 ~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~-~~g~~~~~~~lg~~lg~~l~~~ 486 (575)
...++.+.++=+..-....+.-++..+.+-.+.+-+ +++.+.++-.+|+.+|-.+.++
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 222233344455555556667889999988888888 9999999999999998876653
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.78 E-value=4.7 Score=41.49 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHhh-hccCCChhhHHH---HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008177 23 NNLITYVF-NEMHFPLSKSAN---IVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPS 98 (575)
Q Consensus 23 ~~~~~yl~-~~~~~s~~~~~~---i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 98 (575)
+++.+|+. .+.+++..|... -+..| .+.+.-.+.=.+.|-. =-|+++++-.+...+...++-+.++
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTY--SYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~s------- 94 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTY--SYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPS------- 94 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhH--HHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCC-------
Confidence 45556665 455676666552 12223 3333334444567864 5577877777777788888877655
Q ss_pred CCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHH
Q 008177 99 PCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 178 (575)
.+.+.+.-+..|...+. ..+..+++-+..+ ++...+..+....+.-.|-..|..+
T Consensus 95 ---------------------V~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd---~~~Yqrvt~y~RaA~L~g~~~g~vl 149 (433)
T KOG3810|consen 95 ---------------------VKAMQVLEFFYGPATAA-EIAYYSYIYSKVD---PEMYKRVTGYCRAAFLVGKFVGSVL 149 (433)
T ss_pred ---------------------chheeeehhhcChHHHH-HHhhhheeeeecC---HHHHHHHHHHhHHHHHHHhHHHhHH
Confidence 33344444444443333 3444555555566 4447888888777888888888777
Q ss_pred HHHHhhc--ccchhHHHHHHHHHHHHHHHHHH
Q 008177 179 LVWVQTH--SGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 179 ~~~l~~~--~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
+-.+... .++...=.++.....++.+...+
T Consensus 150 aQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f 181 (433)
T KOG3810|consen 150 AQLLVSLETLSYTTLNYISLAEVTIAVLLALF 181 (433)
T ss_pred HHHHhhhcccchhhhchhhHHHHHHHHHHHhh
Confidence 6555433 33444444565555555555444
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.26 E-value=21 Score=37.88 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008177 427 SIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVN 488 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~ 488 (575)
+++++-+..++.|++... -..-++|++..+|++.--++++......-.|..++..+...+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777888887776 4556889999999999889988888877788888887776554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=89.07 E-value=38 Score=36.86 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008177 433 PQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKI 490 (575)
Q Consensus 433 i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~ 490 (575)
...++..+.....+.+..++-.+++.+..-|++|.+.|+.+++|+.--..++-.+.|.
T Consensus 410 ~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 410 IQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 3456667777777888999999999999999999999999999987777766666554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=86.02 E-value=58 Score=35.64 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008177 446 AVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNK 489 (575)
Q Consensus 446 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~ 489 (575)
+..-|.++.|..+.++-.+..++.....++|..+++.+...+..
T Consensus 162 SlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 162 SLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568899999999999999999999999999999988887765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.21 E-value=9.2 Score=38.00 Aligned_cols=166 Identities=17% Similarity=0.084 Sum_probs=97.8
Q ss_pred HHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch--HHHHHHHHHHHHHHHHHHHh
Q 008177 12 AFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSF--WTMLIFGFVELSGFILLSVQ 89 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~~~~i~~~~~~~~ 89 (575)
.+|...+--++-+.|..=-++-+ .--|.+.+.|.++.++++-+..++..|- ..| ..+.+.+++.+....+-.+.
T Consensus 259 LFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt 334 (454)
T KOG4332|consen 259 LFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILT 334 (454)
T ss_pred HHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHH
Confidence 34554444444444432222222 2347788889999988888887777663 222 45666666555554443332
Q ss_pred hcc-CCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHH
Q 008177 90 AHL-PQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAF 168 (575)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 168 (575)
.+. |. ..+...-+++-.++-...|...|.+.-+=....|+++ |++.++++..-.
T Consensus 335 ~~vsP~----------------------kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea---rstimNfFRvPL 389 (454)
T KOG4332|consen 335 SSVSPS----------------------KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA---RSTIMNFFRVPL 389 (454)
T ss_pred hccCCC----------------------cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH---Hhhhhhheechh
Confidence 210 11 1122223455555666778889999999999999666 999999988877
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 008177 169 CMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISL 206 (575)
Q Consensus 169 ~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~ 206 (575)
|+-..++-...-.=....+-|..|.++.+.+.++.+..
T Consensus 390 nifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 390 NIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred hHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence 76655432210000011345678988888777776554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.11 E-value=56 Score=33.97 Aligned_cols=72 Identities=7% Similarity=-0.071 Sum_probs=38.0
Q ss_pred hhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHH
Q 008177 352 PASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWI 431 (575)
Q Consensus 352 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 431 (575)
.+.+.....+...+.+++.+.+.|+++ ||+ ...+-.++.+++++... ..+.+.+
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~G----rk~-------~cl~~cily~~scl~k~---------------~~~~~~L 124 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYG----RKK-------ACLLFCILYSLSCLTKH---------------SSNYPVL 124 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC----chH-------HHHHHHHHHHHHHHHHh---------------ccccHHH
Confidence 344555555666677777777665444 432 12222222333332211 2345556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008177 432 APQFLIFGLSEMFTAVGL 449 (575)
Q Consensus 432 ~i~~~l~g~~~~~~~~~~ 449 (575)
.+.-++.|++..+.+...
T Consensus 125 ~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAF 142 (354)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677788888877766543
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.58 E-value=16 Score=37.50 Aligned_cols=139 Identities=16% Similarity=0.095 Sum_probs=77.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++++-...++...++-| ..++.+.+..++ .....+.+- +.....+++.+.+..++ |-|+++.++...+..
T Consensus 29 knv~i~s~~fl~~f~a~~g-l~nlq~~vn~~l--g~~sl~~~y----~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y~l 100 (390)
T KOG3097|consen 29 KNVLILSIAFLLTFTAYLG-LQNLQTSVNYDL--GTVSLGALY----LSLIDSSMFMPLLIRFL-GTKWTMVLAVFPYAL 100 (390)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHHhcCc--ccchhhhhh----HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 3444444444444344333 345555554333 233333333 23334444455777775 999999888775543
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhh----
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKL---- 157 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r---- 157 (575)
-. +.++ .+.+..++.+-...|+|.+.....-.+|+++.-.... +.|
T Consensus 101 yi-----A~Nl------------------------~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya-~~~~~q~ 150 (390)
T KOG3097|consen 101 YI-----AANL------------------------EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA-NQRGEQA 150 (390)
T ss_pred HH-----Hhhc------------------------chhHHhhccHHHhhccccccccccCcceecHHHHHHH-Hhhhhhc
Confidence 22 2221 1235668888889999999999988888888765332 223
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHH
Q 008177 158 -----STYFNVAYFAFCMGQLIALTL 178 (575)
Q Consensus 158 -----~~~~~~~~~~~~lg~~~~~~~ 178 (575)
.+.++.+......+..+|..+
T Consensus 151 ~~~~~~~ffg~Ffii~~~~qv~gn~i 176 (390)
T KOG3097|consen 151 GDGMKVRFFGEFFIIFQCAQVWGNLI 176 (390)
T ss_pred cCceeeeehhHHHHHHHHHHHHHHHH
Confidence 345555555555554444433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.08 E-value=19 Score=39.07 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=21.3
Q ss_pred HHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008177 452 FFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLV 487 (575)
Q Consensus 452 ~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i 487 (575)
.+..+..++.++-|..+.......|.+++-.+.-.+
T Consensus 142 WALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 142 WALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred hhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 334455566677777666555566666665554443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.02 E-value=15 Score=39.51 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008177 121 LILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLL 179 (575)
Q Consensus 121 ~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 179 (575)
+..++..++.|+..|........+..+..+++| |..+-.+..++.++|..+|..++
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e---~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE---REVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666888999999999999999999888655 77777777777888888776663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 575 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-110
Identities = 97/550 (17%), Positives = 196/550 (35%), Gaps = 72/550 (13%)
Query: 24 NLITYVFNEMHFPL------SKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGF 77
L ++ + + + + ++ +F+ V+ L GG+++D + G + T+L
Sbjct: 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL 93
Query: 78 VELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCL 137
+ G L++ H Q Y L+L+ALGSG +
Sbjct: 94 IYCVGHAFLAIFEHSVQG---------------------------FYTGLFLIALGSGGI 126
Query: 138 KPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAA 197
KP + S DQF + F++ YF G A + + + G + FG+
Sbjct: 127 KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGV 186
Query: 198 AMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIAT 257
M V + G Y + P V +A+ + + + +L A
Sbjct: 187 LMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVL-------AL 239
Query: 258 NRVLAISPNNRNLLHTEKFRFLDKACIKV-------QDGANESPWKLCTVTQVEQVKIIM 310
++ + N+ L A + V E K V+ V+ ++
Sbjct: 240 IGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVL 299
Query: 311 SVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLY 370
++ +FA F ++ Q + + Q + M PA +QA+ +L++ ++P
Sbjct: 300 RILVLFALVTPFWSLFDQKASTWILQANDM----VKPQWFEPAMMQALNPLLVMLLIPFN 355
Query: 371 EIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFW 430
V P + K ++ L+++G G+ + S + I+ + LSIFW
Sbjct: 356 NFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DGGSALSIFW 407
Query: 431 IAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKI 490
+ + E+ + +EF Y Q+ + M+ + + S + G L V
Sbjct: 408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467
Query: 491 TSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPTTTPH 550
T + ++ +F++ A +++ + ++R Y T
Sbjct: 468 T-----VTEQIVQTG-MSVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYRQATG-- 517
Query: 551 ESHGEDLENQ 560
E+L Q
Sbjct: 518 ---SENLYFQ 524
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 85/461 (18%), Positives = 172/461 (37%), Gaps = 62/461 (13%)
Query: 33 MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHL 92
+H + +A+I+ + V+L GGF++D +G+ + G + + G I+L++
Sbjct: 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA 108
Query: 93 PQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQ 152
L+ ++ L+ +G+G LKPN+ + + +
Sbjct: 109 S----------------------------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEH 140
Query: 153 ESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFV 212
+ ++ F++ F +G IA ++ Q +G + F ++A M +GL+ FG
Sbjct: 141 DRRR-DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199
Query: 213 YRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLH 272
+ + + K I+ + N V S L
Sbjct: 200 TLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAII------VVMNLVGWNSLPAYINLL 253
Query: 273 TEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTF 332
T + S VT E ++++ S +P+F ++F I + Q
Sbjct: 254 T---IVAIAIPVFYFAWMISSVK----VTSTEHLRVV-SYIPLFIAAVLFWAI--EEQGS 303
Query: 333 SVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKF--TKKDSGISP 390
V A + + P + Q++ PL+ +++ P + K + S
Sbjct: 304 VVLATFAAER--VDSSWFPVSWFQSLN--------PLFIMLYTPFFAWLWTAWKKNQPSS 353
Query: 391 LQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLI 450
+ VGL A S + A+ A ++ +S W+ + + L EM + +
Sbjct: 354 PTKFAVGLMFAGLSFLLMAIP-----GALYGTSGKVSPLWLVGSWALVILGEMLISPVGL 408
Query: 451 EFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKIT 491
K + + S + +M + S S G L++ LV+L N +
Sbjct: 409 SVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 74/528 (14%), Positives = 142/528 (26%), Gaps = 189/528 (35%)
Query: 206 LIFGIFVYRNKSPRGSIFTPIAQVFV------------AAITKRKQICPSNTYILHGSQN 253
+F + + + + Q FV + I ++ PS ++ Q
Sbjct: 66 RLFWTLLSKQEE--------MVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQR 116
Query: 254 NIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPW----------KLCTVTQV 303
+ N + N+ + + L +A ++++ K V
Sbjct: 117 DRLYNDNQVFAK--YNVSRLQPYLKLRQALLELRPA----KNVLIDGVLGSGKTWVALDV 170
Query: 304 ---EQVKIIMSVVPIF-----ACTIIFNTILAQLQTFSVQ----QGSAMDNKITNRFQIP 351
+V+ M IF C T+L LQ Q S D+ + +I
Sbjct: 171 CLSYKVQCKMDF-KIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 352 PAS------LQAIPYI--LLI------------------------------FVVPL--YE 371
L++ PY LL+ F+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 372 IVFVPVASKFTKKDS--------GIS----PLQRVGVGLFVATFSMVAAAL--------- 410
I + T + P + + S++A ++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATWDN 346
Query: 411 -----IEKKRRT-----AALNSNQI------LSIF----WIAPQFL-IFGLSEMFTAVGL 449
+K L + LS+F I L + + + V +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 450 I-EFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSD---- 504
+ +K SL Q + S+ + L K+ + + H + D
Sbjct: 407 VVNKLHKYSLVEKQ---------PKESTISIPSIYLELKVKLENEY--ALHRSIVDHYNI 455
Query: 505 ------NDLNKDRLDL-FYWLLAA-LSLIN-----------FFNYLF-----------WS 534
+DL LD FY + L I F ++ F W+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 535 RWYSYNPSLS------PTTTPHESHGEDLENQSLNN--NISKHILRAD 574
S +L P ++ E L N L+ I ++++ +
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 54/413 (13%), Positives = 98/413 (23%), Gaps = 142/413 (34%)
Query: 181 WVQTHSGMDIGFGVSA-AAMAVGLISLI----FGIF---VYRNKSPRGSIFTPIAQVFVA 232
V G+ +G G + A + F IF + SP ++ + ++
Sbjct: 152 NVLID-GV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQ 208
Query: 233 AITKRKQIC-PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGAN 291
S+ L R+L P LL L VQ+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLN----VQN--- 255
Query: 292 ESPWKLCTVTQVEQVKIIMSVVPIFA--CTIIFNTILAQLQTFSVQQGSAMDNKITNRFQ 349
F C I+ T ++T+
Sbjct: 256 --AK----------------AWNAFNLSCKILLTT---------------RFKQVTD--- 279
Query: 350 IPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDS--------GIS----PLQRVGVG 397
L A I + T + P + +
Sbjct: 280 ----FLSAATT---------THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 398 LFVATFSMVAAAL--------------IEKKRRT-----AALNSNQI------LSIF--- 429
S++A ++ +K L + LS+F
Sbjct: 327 PRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 430 -WIAPQFL-IFGLSEMFTAVGLI-EFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSL 486
I L + + + V ++ +K SL Q + S+ + L
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP---------KESTISIPSIYLEL 435
Query: 487 VNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWYSY 539
K+ + + H + D+ D L Y +YS+
Sbjct: 436 KVKLENEYA--LHRSIVDHYNIPKTFDSDD-----LIPPYLDQY-----FYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 9e-07
Identities = 60/343 (17%), Positives = 106/343 (30%), Gaps = 91/343 (26%)
Query: 267 NRNLLHT--EKF-RFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTIIFN 323
+++L + F D C VQD P + + +++ IIMS + +F
Sbjct: 18 YKDILSVFEDAFVDNFD--CKDVQD----MPKSILSKEEID--HIIMSKDAVSGTLRLFW 69
Query: 324 TILAQLQTFSVQQ--GSAMD-------NKITNRFQIPPASLQAIPYI----LLIFVVPLY 370
T+L++ Q VQ+ + + I + P S+ YI L ++
Sbjct: 70 TLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYNDNQVF 126
Query: 371 EIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSM-------VAAALIEKKRRTAALNSN 423
V + K + L+ V + VA + + ++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 424 QILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLL 483
IFW+ L + ++E L LL
Sbjct: 184 ----IFWL-------NLKNCNSPETVLEM--------------------------LQKLL 206
Query: 484 VSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSL-----------INFFNY-- 530
+ TSR+ S++ L + + + L L N FN
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 531 --LFWSRWYSYNPSLSPTTTPHESHGEDLENQSLNNNISKHIL 571
L +R+ LS TT H S D + +L + K +L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLL 307
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.91 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.33 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.28 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.09 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.08 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.79 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.2 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-30 Score=278.98 Aligned_cols=439 Identities=19% Similarity=0.278 Sum_probs=290.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhHHHHHHhhhc-----cCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh-cccchHHHHH
Q 008177 1 MTAAVFVLGLQAFEMTAIAAVGNNLITYVFNE-----MHFPLSKSANIVTNFIGTVFLLSLFGGFLSDS-YLGSFWTMLI 74 (575)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr~~~~~ 74 (575)
+|.++.+....+++.+++|++.++++.|++++ +|++..+.+++.+.+.++..++++++|+++|| + |||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~ 90 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFW 90 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHH
Confidence 35678888999999999999999999999988 99999999999999999999999999999999 7 99999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccch
Q 008177 75 FGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQES 154 (575)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 154 (575)
+.++..++.++++++++ .+.++++|+++|++.|...+...++++|++|++++
T Consensus 91 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFG----------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHSCCS----------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHhhh----------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 99999999999998755 45688999999999999999999999999996543
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecC---CCCC-chhhHHHHH
Q 008177 155 KKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKS---PRGS-IFTPIAQVF 230 (575)
Q Consensus 155 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~~~~-~~~~~~~~~ 230 (575)
.|++++++++.+.++|..++|.+++++.++.|||++|++.++..+++.+...+..++....+ ++++ ..++..+..
T Consensus 143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 37888999999999999999999999999999999999988777766666554443322111 1111 111111100
Q ss_pred HH-------------HHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcc
Q 008177 231 VA-------------AITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKL 297 (575)
Q Consensus 231 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (575)
.. .....+. .+ .++....................|+.
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~----------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGW----------------------------NS--LPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSS----------------------------CC--TTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhccC----------------------------cc--cccchhhhhHHHHHHHHHHHHHHhhc
Confidence 00 0000000 00 00000000000000000000000000
Q ss_pred cchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeecc-ccccCCCccccChhhhccchhHHHHHHHHhhhHHHhh
Q 008177 298 CTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSA-MDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVP 376 (575)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 376 (575)
... ....+++......++.....++..+.+.......+... .+.. ....+.......+..++..++.+++.+|
T Consensus 272 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 272 VKV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 000 01122333334445555555666665554432221111 1111 1335566677777777788888777654
Q ss_pred cccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008177 377 VASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQ 456 (575)
Q Consensus 377 ~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~ 456 (575)
+ +||+ ......+..++++.+++++++...... ...+...+.++..+.+++.+++.+...+..++++.|.
T Consensus 346 ~----~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 414 (491)
T 4aps_A 346 W----KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-----YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414 (491)
T ss_dssp T----TTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred H----hccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4 4443 244566778888888887776654311 1112234566677788889999999899999999999
Q ss_pred cchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 457 SLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 457 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
+|++.||+++|+.++.+.+|..+++.+.+.+.+ .++...|+++++++++..++.+.+.++
T Consensus 415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766532 112245777777777776666665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=281.28 Aligned_cols=478 Identities=19% Similarity=0.350 Sum_probs=283.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMH------FPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIF 75 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 75 (575)
|.++.+....++..+++|++.++++.|+++++| +++.+++++.+.+.++..++++++|+++||++|||++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 567888999999999999999999999999999 99999999999999999999999999999933999999999
Q ss_pred HHHHHHHHHHHHHhh-ccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccch
Q 008177 76 GFVELSGFILLSVQA-HLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQES 154 (575)
Q Consensus 76 ~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 154 (575)
.++..++.+++++++ + .+.+++.|+++|++.+...+...++++|++|++++
T Consensus 92 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 143 (524)
T 2xut_A 92 SLIYCVGHAFLAIFEHS----------------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHHHHHHHHHTSSC----------------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred HHHHHHHHHHHHHhccc----------------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence 999999999999875 4 67789999999999999999999999999997663
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHH
Q 008177 155 KKLSTYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAI 234 (575)
Q Consensus 155 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (575)
.++...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.+...+..++.++.++++++..+..+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 33355666699999999999999999999889999999998887666665555444333222222221111111111111
Q ss_pred hhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhh---cccCCCCCCC-------cccchhhHH
Q 008177 235 TKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIK---VQDGANESPW-------KLCTVTQVE 304 (575)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~ 304 (575)
++++... +......+.. ........ ..+.++.......... ..+.....+| +........
T Consensus 224 ~~~~~~~-~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (524)
T 2xut_A 224 LTKVEGK-GNIGLVLALI--GGVSAAYA-------LVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVD 293 (524)
T ss_dssp ---CTTH-HHHHHHHHHH--HHHHHHHT-------GGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSST
T ss_pred hhhhccc-Cccchhhhhh--hhhhhhhh-------hcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHH
Confidence 1100000 0000000000 00000000 0000000000000000 0000000000 000000111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHhhcccccccC
Q 008177 305 QVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKK 384 (575)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r 384 (575)
+.++.......+.....++..+.+....+..+...++.. .+ .+.+.+...+.+..++..++.+++..+..+|.++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 223333333334444444444444444333322222211 10 24566667777777778888776654443444333
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 008177 385 DSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSF 464 (575)
Q Consensus 385 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~ 464 (575)
....+.+.+|+++.+++++++..... ..+.+...+.+++++.+++.+++.+...+..++++.|.+|++.||+
T Consensus 370 ---~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 370 ---LTALRKMGAGIAITGLSWIVVGTIQL-----MMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTT-----TTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 24556677888888777766554310 0000112355667778899999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 008177 465 LTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRWY 537 (575)
Q Consensus 465 ~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 537 (575)
++|+.++.+++|+.+++.+.+.+.+..+. +|.+++.++. ....|++.+++++++.++++++.+++
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTVT------EQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHHH------HHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc------cccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887542211 1311000111 12236777777777776666555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=262.55 Aligned_cols=412 Identities=11% Similarity=0.005 Sum_probs=228.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCcccccc
Q 008177 37 LSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAK 116 (575)
Q Consensus 37 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
+.+.+++.+++.+|..++++++|+++||+ |||++++++.+++.++.++++++....... .........-
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~----------~~~~~~~~~~ 122 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSI----------NPDNTVPVYL 122 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCS----------SSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------cchhHHHHHH
Confidence 45678999999999999999999999997 999999999999999999999743200000 0000000011
Q ss_pred chhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccc
Q 008177 117 GYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVAYFAFCMGQLIALTLLVWVQTH--------SGM 188 (575)
Q Consensus 117 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~--------~g~ 188 (575)
..++..++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 3458889999999999999999999999999999555 99999999999999999998887766543 346
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCc
Q 008177 189 DIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNR 268 (575)
Q Consensus 189 ~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (575)
|+.+.+..+..++.++..++ .||+++++..+++.+++.+.+.+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 66666555544433332222 1223333322222222222222100000
Q ss_pred ccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhh-HHHHHHHHHH-HHHHHhhccceeeeeeccccccCCC
Q 008177 269 NLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMS-VVPIFACTII-FNTILAQLQTFSVQQGSAMDNKITN 346 (575)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (575)
... .+..+..+......+. . .+......++... ....+..... .+...... .... ...+
T Consensus 248 ~~~-~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~- 308 (491)
T 4gc0_A 248 LAT-QAVQEIKHSLDHGRKT-----G----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYA-PEVF-------KTLG- 308 (491)
T ss_dssp HHH-HHHHHHHHHHHHHHHH-----T----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHH-HHHH-------HHSS-
T ss_pred hhH-HHHHHHHHHHHhhhhh-----h----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcc-hHHH-------HhcC-
Confidence 000 0000000000000000 0 0000000011111 1100000000 00000000 0000 0000
Q ss_pred ccccChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 008177 347 RFQIPPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQIL 426 (575)
Q Consensus 347 g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 426 (575)
..............+..++...+...+.| |++|| +.+..+...+.++++.++..... ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------~~~ 368 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------QAP 368 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------TCC
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCc-------chhccchHHHHHHHHHHHHHHhc---------ccc
Confidence 00111222333444444555555555554 44433 33556666666666555443210 111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCCCCCCccCCC
Q 008177 427 SIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSRTSSSAHGWLSDND 506 (575)
Q Consensus 427 ~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~ 506 (575)
....+....++.........|..+.+..|.+|++.|++++|+.+..+++++.+++.+.+.+.+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~------------- 435 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL------------- 435 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 1111222222222223334567788999999999999999999999999999999988876432110
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC
Q 008177 507 LNKDRLDLFYWLLAALSLINFFNYLFWSRWYSYNPSLSPT 546 (575)
Q Consensus 507 l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (575)
....+....|++++++++++.++.+++.||+|+++.||.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 0112223568889999999999998999999887766543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=249.25 Aligned_cols=397 Identities=9% Similarity=-0.064 Sum_probs=250.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008177 3 AAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSG 82 (575)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~ 82 (575)
.++......+...+..+.+.+.++.+. +++ .++.+.+++.+.+.++..++++++|+++||+ |||++++++.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHH
Confidence 344555556666666666666666555 577 9999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHH----hhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 83 FILLSV----QAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 83 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
.+++++ +++ ++.++++|+++|++.+...+...++++|++|+++ |+
T Consensus 106 ~~~~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---r~ 154 (451)
T 1pw4_A 106 MLFMGFVPWATSS----------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RG 154 (451)
T ss_dssp HHHHHHCHHHHSS----------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HH
T ss_pred HHHHHhhhhcccc----------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh---hh
Confidence 999998 655 4558899999999999999999999999999555 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhh
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKR 237 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (575)
+++++.+.+.++|..++|.+++++.+..| ||+.|++.++..++..+...+..++.+......+. +
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------- 220 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------
Confidence 99999999999999999999999888888 99999998877665555444433322111100000 0
Q ss_pred cccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCccc-chhhHHHHHHHhhHHHHH
Q 008177 238 KQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLC-TVTQVEQVKIIMSVVPIF 316 (575)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 316 (575)
+.... .+.+.+++ ..++ ..++.. .+....+++........+
T Consensus 221 -----~~~~~-~~~~~~~~---------------~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (451)
T 1pw4_A 221 -----EYKND-YPDDYNEK---------------AEQE-----------------LTAKQIFMQYVLPNKLLWYIAIANV 262 (451)
T ss_dssp -----TTCCC----------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred -----hhccc-ccccchhh---------------hhcc-----------------cccccchHHHHHcCHHHHHHHHHHH
Confidence 00000 00000000 0000 000000 000000111111111122
Q ss_pred HHHHHHHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHH
Q 008177 317 ACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVG 395 (575)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~ 395 (575)
+.....+......+.+.. ... |++. ..+.+.....+..+++.++.+++.+|+.+ ++| +.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~-------~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--~~~-------~~~~ 324 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLK-------EVK--HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR--GNR-------GATG 324 (451)
T ss_dssp HHHHHHHHHHHHHHHHBT-------TBS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--TCH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------Hhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCc-------hhHH
Confidence 222222222222222111 111 1111 12344555556666666666666544300 222 2234
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHh
Q 008177 396 VGLFVAT-FSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMTYCSYS 474 (575)
Q Consensus 396 ~g~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 474 (575)
++.++.. ++++++... ...+.+...+..++.|++.+...+..++++.|.+|++.||+++|+.++...
T Consensus 325 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 392 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 392 (451)
T ss_dssp HHHHHHHHHHHHHTTSC------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 4444333 444333221 112445555666777888777788888999999999999999999999999
Q ss_pred H-HHHHHHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 008177 475 F-GFYLSSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWS 534 (575)
Q Consensus 475 l-g~~lg~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~ 534 (575)
+ |..+++.+.+.+.+.. ++...|++.+++.+++.+..+...
T Consensus 393 ~~g~~~~~~~~g~l~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 393 LGGSVAASAIVGYTVDFF-------------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHSS-------------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999886422 223567777777777766655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=229.80 Aligned_cols=352 Identities=11% Similarity=0.035 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....+...+..+...+.+| ++.+++|+++.+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHH
Confidence 3344444455555555545555 57789999999999999999999999999999999997 999999999999999999
Q ss_pred HH---HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 85 LL---SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 85 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
++ +++++ ++.++++|++.|++.|...+...++++|++|+++ |++++
T Consensus 107 ~~~~~~~~~~----------------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~ 155 (438)
T 3o7q_A 107 LFWPAAEIMN----------------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---GHFRL 155 (438)
T ss_dssp HHHHHHHTTC----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---HHHHH
T ss_pred HHHhcccccc----------------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---HHHHH
Confidence 99 55443 7789999999999999999999999999999655 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------chhHHHHHHHHHHHHHHHHHHhcceeee
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQ-THSG-------------------------MDIGFGVSAAAMAVGLISLIFGIFVYRN 215 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 215 (575)
++.+.+.++|..++|.+++++. +..+ ||+.|++.+...++..+..++... ++
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~ 233 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Cc
Confidence 9999999999999999999988 5544 999998766655444443333211 01
Q ss_pred cCCCCCchhhHHHHHHHHHhhhcccCCCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCC
Q 008177 216 KSPRGSIFTPIAQVFVAAITKRKQICPSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPW 295 (575)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (575)
.+++.+. ++ + .+ ..+..+.+
T Consensus 234 ~~~~~~~--------------------~~-----~-~~-------------------~~~~~~~~--------------- 253 (438)
T 3o7q_A 234 LQSDNHS--------------------DA-----K-QG-------------------SFSASLSR--------------- 253 (438)
T ss_dssp CTTTCCC--------------------CS-----S-TT-------------------SHHHHHHH---------------
T ss_pred ccccccc--------------------cc-----c-cc-------------------chhhhHHH---------------
Confidence 0000000 00 0 00 00000000
Q ss_pred cccchhhHHHHHHHhhHHHHHHHHHHHHHHHhhccceeeeeeccccccCCCccccChhhhccchhHHHHHHHHhhhHHHh
Q 008177 296 KLCTVTQVEQVKIIMSVVPIFACTIIFNTILAQLQTFSVQQGSAMDNKITNRFQIPPASLQAIPYILLIFVVPLYEIVFV 375 (575)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 375 (575)
...+++........++..........+.+.+...+....+ ......+.....+..+++.++.+++.|
T Consensus 254 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~~ 320 (438)
T 3o7q_A 254 ------LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT-------AGFAANYLTGTMVCFFIGRFTGTWLIS 320 (438)
T ss_dssp ------HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111111111122222222222222222111110111 111334445555566666666666664
Q ss_pred hcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008177 376 PVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYK 455 (575)
Q Consensus 376 ~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~ 455 (575)
|+++ .+.+..+.++..++++++... +..+.....++.+++.+...|..+++..|
T Consensus 321 ----r~~~-------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 321 ----RFAP-------HKVLAAYALIAMALCLISAFA---------------GGHVGLIALTLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp ----HSCH-------HHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred ----Hhcc-------hHHHHHHHHHHHHHHHHHHHc---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4322 234566666666665554433 11233444577788888888899999999
Q ss_pred hcchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 008177 456 QSLEGMQSFLTAMTYCSYSFGFYLSSLLVSLVNKITS 492 (575)
Q Consensus 456 ~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~ 492 (575)
.+|++ ++++.++.. .+.+|+.+++.+.+.+.+..+
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 99977 999999877 678999999999998876543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=217.10 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
+.+....++..+....+.+.++.+ .+++|.|+.+.+++.+.+.++..+++++.|+++||+ |||++++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566667777777777777765 568999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
+++++++ .+.+++.|++.|++.+...+...+++.|++|+++ |++++++.
T Consensus 81 ~~~~~~~----------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 129 (375)
T 2gfp_A 81 VAVTTSS----------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ---LRHANSLL 129 (375)
T ss_dssp HHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---CCSHHHHH
T ss_pred HHHHhcc----------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---HHHHHHHH
Confidence 9998765 7779999999999999999999999999999655 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 008177 165 YFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLI 204 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i 204 (575)
+...++|..++|.+++++.++.|||+.|++.++..++..+
T Consensus 130 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 130 NMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988999999987766554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=218.55 Aligned_cols=168 Identities=15% Similarity=0.038 Sum_probs=120.5
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|..+......++...++..+.++++.|+++++|+|+.+++++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666777777777778889999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 82 GFILL---SVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
+...+ +++... ...+...+.+.+++.|...+...+...++.++. .++++
T Consensus 86 ~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 137 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL---------------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRRSN 137 (417)
T ss_dssp CHHHHHHHTHHHHH---------------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhhcc
Confidence 32211 221110 001233455555555544444444444444322 23366
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 008177 159 TYFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAM 199 (575)
Q Consensus 159 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 199 (575)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 66777777788999999999999886 58999998766543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=140.12 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=150.2
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc--cchHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYL--GSFWTMLIFGFVE 79 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~~~ 79 (575)
+.++......++..+..+++..+++.|+++.+|+++.+++++.+.+.++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456777778888889999999999999998899999999999999999999999999999999 7 9999988887776
Q ss_pred H-HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhh
Q 008177 80 L-SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLS 158 (575)
Q Consensus 80 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~ 158 (575)
. ++.+++.+..+ .+.+.+.+..++.|++.+...+...+++.|.+|+++ |+
T Consensus 331 ~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~g 381 (451)
T 1pw4_A 331 VTIATIVYWMNPA--------------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AG 381 (451)
T ss_dssp HHHHHHHTTSCCT--------------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HH
T ss_pred HHHHHHHHHHhcc--------------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---hh
Confidence 6 56555554321 125557777788899888888888999999999555 99
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 008177 159 TYFNVAYFAFCM-GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFG 209 (575)
Q Consensus 159 ~~~~~~~~~~~l-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~ 209 (575)
++.++++...++ |..++|.+.+++.+..||+..|++.++..+++.+..+..
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999998887776666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=128.30 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=137.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHH-hhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITY-VFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVEL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~ 80 (575)
+.++......++.....+++..+++.| +++.+|+++.+++++.+.+.++..++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456777777788888888999999999 8888899999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++.+++.+.++ .. ..+..++.|++.+...+...++..|.+|++ ++.+
T Consensus 337 ~~~~~~~~~~~----------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~ 383 (438)
T 3o7q_A 337 ALCLISAFAGG----------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----TKYG 383 (438)
T ss_dssp HHHHHHHHCCH----------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG----HHHH
T ss_pred HHHHHHHHcCC----------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccch
Confidence 88888777533 22 233447788889999999999999998843 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSG-MDIGFGVSAAAMAVGL 203 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~i~~ 203 (575)
.++.. ...+|..++|.+.|++.+..| ++..|++.++..++..
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 66555 566999999999999999988 9999987665544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=129.66 Aligned_cols=172 Identities=12% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHF---PLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~---s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+......++....++.....+|.|+.+.++. +..+.+++.+...++..++.++.|+++||+ |||+++..+.++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~ 301 (417)
T 2cfq_A 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHH
Confidence 3333333444445555556788888766653 244557777777778888999999999996 999999988888887
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..+.++.++ ...+.+..++.+++.+...+....+.+|.+|+ +.|+++.
T Consensus 302 ~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~~~g~~~ 350 (417)
T 2cfq_A 302 RIIGSSFATS----------------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEV---RFSATIY 350 (417)
T ss_dssp HHHHHTTCCS----------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH---HHHHHHH
T ss_pred HHHHHHHhcc----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHH
Confidence 7766655422 44455666667777666666778899999994 4499998
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NV-AYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~-~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++ ++....+|..++|.++|++.++.|++..|.+.++..+++.+..+.
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 88 577788999999999999998888988888877776666655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=121.57 Aligned_cols=184 Identities=14% Similarity=0.026 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-----HHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTML-----IFGFVE 79 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~~~ 79 (575)
+.+....++....++.....++.|+++.++.+..+.+++.+...++..++.++.|+++||+ |||+... .+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 4444455566677777888899999988998888889999999999999999999999996 9987655 677777
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhh
Q 008177 80 LSGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLST 159 (575)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~ 159 (575)
+++..++++...... .....+...+.+..++.|++.+...+...+++.|.+|++. |++
T Consensus 365 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---~g~ 422 (491)
T 4aps_A 365 GLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---NSQ 422 (491)
T ss_dssp HHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC---SSS
T ss_pred HHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH---HHH
Confidence 777766665431000 0001124556677788999999999999999999999655 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcce
Q 008177 160 YFNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFV 212 (575)
Q Consensus 160 ~~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~ 212 (575)
+.++++...++|..+++.+.+++.+ .++...|.+.+...+++.+..++..++
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888765 467777777766666665555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-09 Score=113.41 Aligned_cols=182 Identities=10% Similarity=-0.011 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFI 84 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~ 84 (575)
.......++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3344444444444444445555566678888888888888888889999999999999996 999999999998888887
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH
Q 008177 85 LLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA 164 (575)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 164 (575)
.++....... ........+..+..+++ .+..+....+.+|.+|.+. |+++.++.
T Consensus 358 ~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~---R~~~~g~~ 411 (491)
T 4gc0_A 358 SLGTAFYTQA----------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI---RGKALAIA 411 (491)
T ss_dssp HHHHHHHTTC----------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT---HHHHHHHH
T ss_pred HHHHHHhccc----------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH---HHHHHHHH
Confidence 7765432111 11112222222222332 2344677789999999554 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh------cccchhHHHHHHHHHHHHHHHHHHhccee
Q 008177 165 YFAFCMGQLIALTLLVWVQT------HSGMDIGFGVSAAAMAVGLISLIFGIFVY 213 (575)
Q Consensus 165 ~~~~~lg~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 213 (575)
.....+|..+++.+.+.+.+ ..++.+.|++.++..+++.+..++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999999998887666543 34566678777777777776666666544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-09 Score=112.61 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=127.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH-HH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFV-EL 80 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~-~~ 80 (575)
|.++......++.....+++..++|.|+++++|.++.+.+++.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3456667777788888888999999999988999999999999999999999999999999996 872 2333322 22
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhH
Q 008177 81 SGFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTY 160 (575)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~ 160 (575)
++..+...... ...+.+.+.+..++.|++.+...+...++..|.+| ++ |+++
T Consensus 276 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~---~g~~ 327 (375)
T 2gfp_A 276 AGLLMWIPDWF------------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL---AGTA 327 (375)
T ss_dssp TSSSSSHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH---HHHH
T ss_pred HHHHHHHHhhh------------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc---cchH
Confidence 22221111110 01134556677788899999999999999999987 44 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 008177 161 FNVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAA 197 (575)
Q Consensus 161 ~~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~ 197 (575)
.++.+...++|..++|.+.+.+.+..+|+..+.+.++
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999887788877776543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=86.92 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=82.2
Q ss_pred hhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccHHHH
Q 008177 352 PASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFVATFSMVAAALIEKKRRTAALNSNQILSIFWI 431 (575)
Q Consensus 352 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 431 (575)
.+++.....+...++.++.+++.||+. ++| +.+.++.++.+++.++.... ..+.+.+
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~---g~r-------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 112 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFF---GKY-------NTILWLSLIYCVGHAFLAIF-------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSS---CSH-------HHHHHHHHHHHHHHHHHHHT-------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---cch-------HHHHHHHHHHHHHHHHHHHh-------------cccHHHH
Confidence 344555566666667777776664440 333 34667777777776665543 1145566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Q 008177 432 APQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAM---TYCSYSFGFYLSSLLVSLVN 488 (575)
Q Consensus 432 ~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~l~~~i~ 488 (575)
.+..++.|++.+...+...+++.|.+|++.|+++.+. .+....+|..+++.+.+.+.
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778889999999999999999999999999877666 88888899999998877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.92 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.3 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.27 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-26 Score=242.53 Aligned_cols=177 Identities=11% Similarity=0.000 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhhhh---hhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 5 VFVLGLQAFEMTAIAA---VGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|.++...++..+..|. ..+.+.++++ ++|+|++|.+++.+.+.++..++++++|+++||+ |||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444444444444432 3455666776 6899999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+.++++++.... .+...+++.|++.|++.|...+...++++|++|+++ |++++
T Consensus 102 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---r~~~~ 154 (447)
T d1pw4a_ 102 VMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---RGGIV 154 (447)
T ss_dssp HHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---HHHHH
T ss_pred HHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc---ccccc
Confidence 999998764211 124568999999999999999999999999999555 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTH-SGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
++.+.+.++|..+++.+++.+... .+||+.|++.+...++..+..+...
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 155 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred cccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence 999999999999999998876654 4799999888776655555444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.7e-23 Score=214.71 Aligned_cols=394 Identities=11% Similarity=0.027 Sum_probs=232.1
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
|++|.+....++..++...+.+.++.|+++++|+|+.++|++.+.+.++..++++++|+++||+ ||||+++++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 6788888889998888888999999999999999999999999999999999999999999997 999999999999988
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
+..++.+..+.+. .....++.+.+.+.+.+...........+..+++ .+++....
T Consensus 86 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 140 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV-SRRSNFEF 140 (417)
T ss_dssp THHHHHHHTHHHH------------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH-HHHHSCCH
T ss_pred HHHHHHHhhhhhh------------------------HHHHHHHHHHHhhhcccccccchhhcccccccch-hhhhHHHH
Confidence 8888887643111 1112334444444444444444433333333322 23355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhcceeeecCCCCCchhhHHHHHHHHHhhhcccC
Q 008177 162 NVAYFAFCMGQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIFGIFVYRNKSPRGSIFTPIAQVFVAAITKRKQIC 241 (575)
Q Consensus 162 ~~~~~~~~lg~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (575)
+........+..+++.+++.+.+. +|+..+........+..+...+..++.+..+++++. + ..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~--- 203 (417)
T d1pv7a_ 141 GRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA--V-----------GA--- 203 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH--H-----------HS---
T ss_pred HHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh--h-----------hh---
Confidence 777778889999999999888764 455555554444333333333332221111111000 0 00
Q ss_pred CCCcccccccccccchhhhhhcCCCCcccCcccccchhhhhhhhcccCCCCCCCcccchhhHHHHHHHhhHHHHHHHHHH
Q 008177 242 PSNTYILHGSQNNIATNRVLAISPNNRNLLHTEKFRFLDKACIKVQDGANESPWKLCTVTQVEQVKIIMSVVPIFACTII 321 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (575)
+. ++.......... ... ......... ......
T Consensus 204 -~~-----------------------------~~~~~~~~~~~~-------------~~~--~~~~~~~~~---~~~~~~ 235 (417)
T d1pv7a_ 204 -NH-----------------------------SAFSLKLALELF-------------RQP--KLWFLSLYV---IGVSCT 235 (417)
T ss_dssp -CC-----------------------------CCCCHHHHHHHT-------------TSS--HHHHHHHHH---HHHHHH
T ss_pred -hc-----------------------------cccccccccccc-------------ccc--cccchhhhh---HHHHHH
Confidence 00 000000000000 000 000111111 111111
Q ss_pred HHHHHhhccceeeeeeccccccCCCcccc-ChhhhccchhHHHHHHHHhhhHHHhhcccccccCCCCCCchhHHHHHHHH
Q 008177 322 FNTILAQLQTFSVQQGSAMDNKITNRFQI-PPASLQAIPYILLIFVVPLYEIVFVPVASKFTKKDSGISPLQRVGVGLFV 400 (575)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~r~~~~~~~~~~~~g~~~ 400 (575)
.............. ..... +... ..........+...+...+.+++ .+|. ++.+.+..+.++
T Consensus 236 ~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~-------~~~~~~~~~~~~ 298 (417)
T d1pv7a_ 236 YDVFDQQFANFFTS---FFATG---EQGTRVFGYVTTMGELLNASIMFFAPLI----INRI-------GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHTT---SSSCH---HHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHH-------CHHHHHHHHHHH
T ss_pred HHhhhccccccccc---ccccc---ccchhhhcccccccccccccchhhhhhh----hccc-------ccccchhhhHHH
Confidence 11111111110000 00000 0000 11122233333333444444433 3454 233456677777
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHhHHHHH
Q 008177 401 ATFSMVAAALIEKKRRTAALNSNQILSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEGMQSFLTAMT-YCSYSFGFYL 479 (575)
Q Consensus 401 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~l 479 (575)
.+++++.+... .+.+.+.+..++.+++.+...+...+++.|.+|++.|+++.++. ++.+.+|..+
T Consensus 299 ~~~~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 364 (417)
T d1pv7a_ 299 MSVRIIGSSFA--------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp HHHHHHHHHTC--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred HHHhhhccccc--------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 76766665543 35566677778889999999999999999999999999999975 5667899999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008177 480 SSLLVSLVNKITSRTSSSAHGWLSDNDLNKDRLDLFYWLLAALSLINFFNYLFWSRW 536 (575)
Q Consensus 480 g~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 536 (575)
++.+.|.+.+. .++...|++.++++++..++..+..++
T Consensus 365 ~~~~~G~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 365 MSVLAGNMYES-------------------IGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHH-------------------HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHH-------------------HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999988543 334456788888887777776666543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.7e-11 Score=126.47 Aligned_cols=180 Identities=17% Similarity=0.029 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008177 2 TAAVFVLGLQAFEMTAIAAVGNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELS 81 (575)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i 81 (575)
+.++......++.....++...+++.|+.+.++.+..+.++..+.+.++..++.+++|+++||+ +||+..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4556777777888888999999999999999999999999999999999999999999999996 887655444443333
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHH
Q 008177 82 GFILLSVQAHLPQLRPSPCNMLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYF 161 (575)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 161 (575)
...........+ ..+.....+..++.|++.++..+....+..|.+|++. |+++.
T Consensus 328 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---~g~~~ 381 (447)
T d1pw4a_ 328 VTIATIVYWMNP-----------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---AGTAA 381 (447)
T ss_dssp HHHHHHHTTSCC-----------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---HHHHH
T ss_pred HHHHHHHHHhcc-----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH---HHHHH
Confidence 333322211101 1235556677778888888888899999999999554 99999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 008177 162 NVAYFAFCM-GQLIALTLLVWVQTHSGMDIGFGVSAAAMAVGLISLIF 208 (575)
Q Consensus 162 ~~~~~~~~l-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~i~~i~~~~ 208 (575)
++.+...++ |.+++|.+.|++.++.||+..|++.+...+++.+.+..
T Consensus 382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 998887777 56778999999999999999988877665555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=8.2e-12 Score=126.22 Aligned_cols=157 Identities=15% Similarity=0.028 Sum_probs=128.8
Q ss_pred hHHHHHHhhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 008177 22 GNNLITYVFNEMHFPLSKSANIVTNFIGTVFLLSLFGGFLSDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPSPCN 101 (575)
Q Consensus 22 ~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 101 (575)
......+..++.+.+....+.......++..++..+.|++.||+ |||+.+.++.++..++.++.++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~---------- 311 (417)
T d1pv7a_ 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATS---------- 311 (417)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCCC----------
T ss_pred ccccccccccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccccc----------
Confidence 33334444445556667778888888899999999999999996 9999999999999999988888654
Q ss_pred CCCCCCCCCccccccchhHHHHHHHHHHHHHcccccccchhhhhcccCCccchhhhhhHHHHH-HHHHHHHHHHHHHHHH
Q 008177 102 MLTDTDGTQNCQEAKGYKALILYLALYLVALGSGCLKPNIISHGADQFKKQESKKLSTYFNVA-YFAFCMGQLIALTLLV 180 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~~~~~~~~ 180 (575)
.+.+++..++.|++.+...+...+++.|.+|++. |++..++. .....+|..++|.+.|
T Consensus 312 ------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~i~~~~~G 370 (417)
T d1pv7a_ 312 ------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF---SATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred ------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788889999999999999999999999555 99999975 4567799999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHhc
Q 008177 181 WVQTHSGMDIGFGVSAAAMAVGLISLIFGI 210 (575)
Q Consensus 181 ~l~~~~g~~~~f~~~~~~~~i~~i~~~~~~ 210 (575)
++.++.|++..|++.++..++..++..+..
T Consensus 371 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 371 NMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888777666655555543
|