Citrus Sinensis ID: 008203

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDASDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
cHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEEccccccEEEEEEEccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
cHHHHHHcccccEEEcHHHHcccccccccEEEEEEcccccccccccccccccccccHHHHHHccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcHccccccccccccccccEEEEHHHHHHccccccccHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHcccccccccccHHHHHHHHcccccEEcccEEEEEEccccEEEEEEEEccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHcccccccccccccHHHHHHHHHHHHccccccccHcccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
MEEQAENRNkrklnidweevlpgrnddvpaelivkksgpptpaqksvpmsddpgsgeeldrqipdqELGVRIARMKDTYSkvrhclpdkgkKILATVTRLEKECERRrlagavpvcldidgcdkltqspssdasdcftqrtpspqiqskssFTSVFREKMEENRDCREANAFDKELSILAhcdrrkmrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqkdrasltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhietTEQADEFAECMIdakiyypsrvdpesveicytdinhlapaayltspIMNFYIRYLQlqasptnrairdchfFNTYFYSKLKEAvshkggdkdsFFIKFRRWWKgvnifqksyvlipihedvHWSLVIICipdkedesgpiilhldslklhcSLSIFSNIRSFLKEEWNYLkqevspsdlpIAERIWQHlprriddriipvpqqkndydcgLFVLFFMERFMEEAPERLKKKDLAMFgkrwfrpeeasGLRIKIRNLLKKQFQissaeccnsksltspggcsp
meeqaenrnkrklnidweevlpgrnDDVPAELIVKksgpptpaqksvpmsddpgsgeeldrqipdqeLGVRIARMKdtyskvrhclpdkgkkilATVTRLEKEcerrrlagavpvcLDIDGCDKLTQSPSSDASDCFTqrtpspqiqskssfTSVFREKMEENrdcreanafdkelsilahcdrrkmrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqKDRASltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhiETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEavshkggdkDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQevspsdlpIAERIWQHLPRRIDDriipvpqqkndyDCGLFVLFFMERFMEEAPERLKKKDLAMFGKrwfrpeeasglrIKIRNLLKKQFQissaeccnsksltspggcsp
MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDASDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
********************************************************************GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDK*****************************************************************************************************************************************************************************EFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAEC**************
*******************V**********************************************************************************************************************************************************************************************************************************************************************************************KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEA**********FFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLL*************************
**********RKLNIDWEEVLPGRNDDVPAELIVKKSG*********************DRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLT*************************FTSVFREKMEENRDCREANAFDKELSILAHCDRR**********************WPFHKGDKSF***************************PKKKESFEVLPSKNPRLRKEQNLVLLD******************IETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNS***********
*********KRKLNIDWEEVLPGRNDDVPAELIVKKS*******************EELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLA**********************************************************************************************************************************************************************************HIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQIS******************
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MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDASDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q2PS26584 Ubiquitin-like-specific p yes no 0.898 0.883 0.409 1e-111
Q8RWN0571 Ubiquitin-like-specific p no no 0.874 0.879 0.379 6e-93
Q8L7S0 931 Probable ubiquitin-like-s no no 0.426 0.263 0.287 2e-26
Q0WKV8 774 Probable ubiquitin-like-s no no 0.432 0.320 0.296 5e-25
O13769638 Ubiquitin-like-specific p yes no 0.381 0.343 0.273 5e-21
Q8WP32755 Sentrin-specific protease N/A no 0.303 0.230 0.304 4e-16
Q96HI0755 Sentrin-specific protease yes no 0.303 0.230 0.304 4e-16
Q6NXL6749 Sentrin-specific protease no no 0.303 0.232 0.309 5e-16
Q9HC62589 Sentrin-specific protease no no 0.310 0.302 0.296 1e-15
Q5R7K7589 Sentrin-specific protease no no 0.310 0.302 0.296 2e-15
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1 Back     alignment and function desciption
 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 244/596 (40%), Positives = 343/596 (57%), Gaps = 80/596 (13%)

Query: 10  KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELG 69
           K+   IDW   +  + D+VP EL +  +  PTP       SDD     +L   + D++L 
Sbjct: 16  KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPTPPPPPTFFSDDQTDSPKL---LTDRDLD 70

Query: 70  VRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDID--------- 120
            ++ R K   + +   LPDKG+KI   +  LE+E +RR L G+    +++D         
Sbjct: 71  EQLERKKAILT-LGPGLPDKGEKIRLKIADLEEEKQRRVLEGSK---MEVDRSSKVVSST 126

Query: 121 -----------GCDKLTQSPSSDASDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREA 169
                         K T   ++D+ D   Q     +  S+S+F++VF +      D +  
Sbjct: 127 SSGSDVLPQGNAVSKDTSRGNADSKDTSRQGNADSKEVSRSTFSAVFSKP---KTDSQSK 183

Query: 170 NAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--------------PFHKGDK 215
            AF KEL  L  C+RRK ++       GR+ V   S  W               F  G K
Sbjct: 184 KAFGKELEDLG-CERRKHKA-------GRKPVTRLSNGWRLLPDVGKAEHSAKQFDSGLK 235

Query: 216 SFNSNGSQKDRASLTCPSHQSG---------------ENSSSCLPKKKESFEVLPSKNPR 260
               N   K+      P   S                 ++S     ++ S+E  PS++ R
Sbjct: 236 ESKGNKKSKEPYGKKRPMESSTYSLIDDDDDDDDDDDNDTSGHETPREWSWEKSPSQSSR 295

Query: 261 LRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVE 320
            RK+    +++ DE       EE++ S      EQA E  E + +  I YP+R DP  V+
Sbjct: 296 RRKKSEDTVINVDE-------EEAQPST---VAEQAAELPEGLQE-DICYPTRDDPHFVQ 344

Query: 321 ICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKG 380
           +C  D+  LAP  YLTSP+MNFY+R+LQ Q S +N+   DCHFFNTYFY KL +AV++KG
Sbjct: 345 VCLKDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFYKKLSDAVTYKG 404

Query: 381 GDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLK 440
            DKD+FF++FRRWWKG+++F+K+Y+ IPIHED+HWSLVI+CIPDK+DESG  ILHLDSL 
Sbjct: 405 NDKDAFFVRFRRWWKGIDLFRKAYIFIPIHEDLHWSLVIVCIPDKKDESGLTILHLDSLG 464

Query: 441 LHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYD 500
           LH   SI  N++ FLK+EWNYL Q+    DLPI+E++W++LPRRI + ++ VPQQKND+D
Sbjct: 465 LHSRKSIVENVKRFLKDEWNYLNQDDYSLDLPISEKVWKNLPRRISEAVVQVPQQKNDFD 524

Query: 501 CGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQIS 556
           CG FVLFF++RF+EEAP+RLK+KDL MF K+WFRP+EAS LRIKIRN L + F++S
Sbjct: 525 CGPFVLFFIKRFIEEAPQRLKRKDLGMFDKKWFRPDEASALRIKIRNTLIELFRVS 580
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1C.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1 Back     alignment and function description
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3 Back     alignment and function description
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2 Back     alignment and function description
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2 Back     alignment and function description
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2 SV=1 Back     alignment and function description
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3 Back     alignment and function description
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1 Back     alignment and function description
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3 Back     alignment and function description
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
356524061594 PREDICTED: LOW QUALITY PROTEIN: ubiquiti 0.944 0.912 0.478 1e-126
255568770283 sentrin/sumo-specific protease, putative 0.489 0.992 0.747 1e-124
356565950586 PREDICTED: ubiquitin-like-specific prote 0.876 0.858 0.499 1e-121
145336892584 ubiquitin-like-specific protease 1D [Ara 0.898 0.883 0.409 1e-109
297840529593 cysteine-type peptidase [Arabidopsis lyr 0.914 0.885 0.399 1e-104
296086553221 unnamed protein product [Vitis vinifera] 0.372 0.968 0.757 3e-94
359473447304 PREDICTED: ubiquitin-like-specific prote 0.374 0.707 0.748 4e-94
3249071547 Contains similarity to protein-tyrosine 0.862 0.904 0.391 1e-93
297843874569 Ulp1 protease family protein [Arabidopsi 0.878 0.885 0.380 1e-91
42571423570 ubiquitin-like-specific protease 1C [Ara 0.872 0.878 0.381 3e-91
>gi|356524061|ref|XP_003530651.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like-specific protease 1D-like [Glycine max] Back     alignment and taxonomy information
 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/575 (47%), Positives = 359/575 (62%), Gaps = 33/575 (5%)

Query: 1   MEEQAENRNKRK--LNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEE 58
           MEEQ   + K K  L IDW      ++D  P +  +       PA  S    D       
Sbjct: 1   MEEQQRQQQKPKSPLPIDWSRQF--QSDSPPRDYDI------LPASSSADQDDLSA---- 48

Query: 59  LDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLD 118
               IPD +L   I   K T       LPDKG K+ AT+ R ++E   R     +    D
Sbjct: 49  ----IPDHKLRESIQSKKRTLDVTGKNLPDKGTKLRATIDRYQQELTHREQQKRLRQEDD 104

Query: 119 IDGCDKLTQSPSSDA-----SDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFD 173
            D   +  Q+ S+DA     S+   +     Q QS+S+FTS F ++ME+N +C  ++AF 
Sbjct: 105 KDRKPQPGQASSTDAVTEGVSNDLREENLLSQAQSQSTFTSCFVKQMEDNTNCTASDAFR 164

Query: 174 KELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--PFHKGDKSFNSNGSQKDRASLTC 231
           KE+S+  H D +K++  G+  +R R    S   ++  P     ++  S+G +  RA+ + 
Sbjct: 165 KEMSLFKHSDYQKIQDKGEPRRRKRHRSSSRQLQFQCPSKLSKRNTFSDG-KTCRATSSF 223

Query: 232 PSHQSGENSSSCLPK---KKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSL 288
               +G N   C PK   +K++F+ +     R RK   +VL  +D+   ++  E  +   
Sbjct: 224 GLRNNGRNLPRCYPKVHGRKDAFQAIQLDGSRSRKGLPIVLDVDDDDGGDNNDEYDDDEA 283

Query: 289 HI-ETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYL 347
           HI E TE  ++F E + +AKIY+PSR DPE VEIC+TD N LAP  YLTS IMNFYI+YL
Sbjct: 284 HIVEKTE--NKFPEYLKEAKIYFPSRDDPECVEICFTDTNCLAPEGYLTSTIMNFYIQYL 341

Query: 348 QLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLI 407
           Q QA  TNR++   HFFNTYFY KLKEAVS+K  D +  F KFRRWWKGVNIFQK+YVLI
Sbjct: 342 QQQALLTNRSLSAYHFFNTYFYKKLKEAVSYKQSDXE-IFAKFRRWWKGVNIFQKAYVLI 400

Query: 408 PIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVS 467
           PIHED+HWSL+IICIPDKEDESGPIILHLDSL LH S S+F NI+S+L EE NY+ +E  
Sbjct: 401 PIHEDLHWSLIIICIPDKEDESGPIILHLDSLGLHSSKSVFDNIKSYLIEEKNYMDREDM 460

Query: 468 PSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAM 527
            SD+ IA+RIW+ LPRRI+ +II VPQQKNDYDCGLFVL+F+ERFMEEAPERLK KDL M
Sbjct: 461 ASDVSIADRIWKCLPRRIESQIIQVPQQKNDYDCGLFVLYFIERFMEEAPERLKMKDLDM 520

Query: 528 FGKRWFRPEEASGLRIKIRNLLKKQFQISSAECCN 562
           FG+RWF+P+EAS LR+KIR LL ++ Q S  + CN
Sbjct: 521 FGRRWFKPQEASNLRVKIRKLLVEKLQNSVTDNCN 555

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568770|ref|XP_002525356.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223535319|gb|EEF36994.1| sentrin/sumo-specific protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356565950|ref|XP_003551198.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Glycine max] Back     alignment and taxonomy information
>gi|145336892|ref|NP_176228.3| ubiquitin-like-specific protease 1D [Arabidopsis thaliana] gi|122202545|sp|Q2PS26.1|ULP1D_ARATH RecName: Full=Ubiquitin-like-specific protease 1D; AltName: Full=Protein OVERLY TOLERANT TO SALT 1 gi|83316254|gb|ABC02400.1| SUMO isopeptidase [Arabidopsis thaliana] gi|332195546|gb|AEE33667.1| ubiquitin-like-specific protease 1D [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840529|ref|XP_002888146.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297333987|gb|EFH64405.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|296086553|emb|CBI32142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473447|ref|XP_003631300.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|3249071|gb|AAC24055.1| Contains similarity to protein-tyrosine phosphatase 2 gb|L15420 from Dictyostelium discoideum. EST gb|N38718 comes from this g [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297843874|ref|XP_002889818.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297335660|gb|EFH66077.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42571423|ref|NP_973802.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] gi|332190475|gb|AEE28596.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2PS26ULP1D_ARATH3, ., 4, ., 2, 2, ., 6, 80.40930.89890.8835yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ULP1D
ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase; Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity- it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP-OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S-OTS1 increases salt tolerance and reduce [...] (584 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G60190
Ulp1 protease family protein; Encodes a protein that can cleave residues from the C-terminus of [...] (226 aa)
      • 0.867
SUMO2
SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2); protein binding / protein tag; Encodes a small ubiquit [...] (116 aa)
      • 0.790
SUMO1
SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag; Encodes a small ubiquit [...] (100 aa)
      • 0.790
SUMO3
SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3); protein binding / protein tag; Encodes a small ubiquit [...] (111 aa)
      • 0.784
SUMO5
SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5); protein tag; Encodes a small ubiquitin-like modifier [...] (108 aa)
      • 0.784
SIZ1
SIZ1; DNA binding / SUMO ligase; Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase [...] (885 aa)
      • 0.679
SCE1
SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase; Encodes a SUMO liagse that directs the attachmen [...] (160 aa)
      • 0.657
AT4G25600
ShTK domain-containing protein; ShTK domain-containing protein; FUNCTIONS IN- oxidoreductase ac [...] (291 aa)
      • 0.623
AT2G12100
transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT5G28480.1) [...] (1224 aa)
      • 0.591
SAE2
SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme; Encodes one of the two subunits of the [...] (700 aa)
      • 0.534

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 3e-38
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 4e-28
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 1e-12
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information 
 Score =  139 bits (352), Expect = 3e-38
 Identities = 63/224 (28%), Positives = 91/224 (40%), Gaps = 40/224 (17%)

Query: 334 YLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV----------SHKGGDK 383
           +L   +++FY++ L  +    +      HF N++FYSKL +            S K G K
Sbjct: 2   WLNDTVIDFYLKLLAHRLESEDYKNERVHFLNSFFYSKLTKLFPDFKKCKSKKSFKWGKK 61

Query: 384 DSFFIKFRRWWKGVN---IFQKSYVLIPIHED-VHWSLVIICIPDKEDESGPIILHLDSL 439
             F+   RRW + VN   +F    + IPI+ D  HW L+II +P K       I  LDSL
Sbjct: 62  KDFYNGVRRWTRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKT------ITILDSL 115

Query: 440 KLH------CSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVP 493
                      +    N+  +L  E    +Q+               L      R+  VP
Sbjct: 116 ISLHTEAVKKRIRPIDNMLPYLMSEALKKEQDDP------------DLTPFEIKRLTKVP 163

Query: 494 QQKNDYDCGLFVLFFMERFMEEAPERL--KKKDLAMFGKRWFRP 535
           QQ N  DCG +VL F+E   E  P       KD+  F K+    
Sbjct: 164 QQPNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVD 207

This domain contains the catalytic triad Cys-His-Asn. Length = 216
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.97
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.96
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.96
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 96.99
PRK14848317 deubiquitinase SseL; Provisional 95.19
PRK11836403 deubiquitinase; Provisional 94.57
PF15328223 GCOM2: Putative GRINL1B complex locus protein 2 90.19
PRK15371287 effector protein YopJ; Provisional 90.17
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 87.78
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 87.61
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-46  Score=400.28  Aligned_cols=212  Identities=28%  Similarity=0.521  Sum_probs=177.3

Q ss_pred             cCCCCccchHhHHHHHHhhcc---CeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCce
Q 008203          285 EGSLHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC  361 (574)
Q Consensus       285 ~~~~~~~~~e~~~e~~~~~~~---~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~  361 (574)
                      +..+++++.+...++.+.+.+   ..+-.    ..+++.||.+||.||.+++||||+||||||++|.++...... ++++
T Consensus       285 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~-yp~~  359 (511)
T KOG0778|consen  285 EDSFPPLTEEREAQVQRAFSSRNSTEILV----THFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSK-YPKV  359 (511)
T ss_pred             ccccccccHHHHHHHHHHhccCCccccee----hhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCC-CceE
Confidence            445667776666777766542   11111    246799999999999999999999999999999999876544 7899


Q ss_pred             EEEchhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCcEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEecCCCC
Q 008203          362 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL  441 (574)
Q Consensus       362 ~~fnTfFy~kL~~~~~~kg~d~~~~~~~vkrWtk~~nifekd~IfIPIn~~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~  441 (574)
                      |+||||||++|...          +|.+|+|||+++|||++|+||||||.+.||+|+||++..+      +|.|||||++
T Consensus       360 h~FnTFFy~kL~~~----------gy~~VkRWTk~v~if~~d~i~vPIH~~vHW~l~vid~r~k------~i~y~DS~~~  423 (511)
T KOG0778|consen  360 HAFNTFFYTKLVGR----------GYAGVKRWTKKVDIFDKDIIFVPIHLGVHWCLAVIDLREK------TIEYYDSLGG  423 (511)
T ss_pred             EEEechhhhhhhhc----------chHHHHhHhhccCccccceeEeeeecCceEEEEEEEcccc------eEEEeeccCC
Confidence            99999999999862          5899999999999999999999999999999999999999      9999999997


Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccc
Q 008203          442 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK  521 (574)
Q Consensus       442 ~~~k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ft  521 (574)
                      ..++ ++..|..||..|+..+.+.    |  |+...|+..      ...++|||.||+|||||+|+|++++.++.|..|+
T Consensus       424 ~~nr-~~~aL~~Yl~~E~~~k~~~----~--~d~s~w~~~------~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ft  490 (511)
T KOG0778|consen  424 GPNR-ICDALAKYLQDESRDKSKK----D--FDVSGWTIE------FVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFT  490 (511)
T ss_pred             CCcc-hHHHHHHHHHHHHhhhhcC----C--CCccchhhh------hhhccccccCCCccceEEeeechhhccCCCcccC
Confidence            6544 5599999999999775432    2  233568753      2458999999999999999999999999999999


Q ss_pred             hhhhhcccc
Q 008203          522 KKDLAMFGK  530 (574)
Q Consensus       522 q~dm~~f~~  530 (574)
                      |+|||+||+
T Consensus       491 q~dmp~fR~  499 (511)
T KOG0778|consen  491 QQDMPYFRK  499 (511)
T ss_pred             hhhhHHHHH
Confidence            999987543

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF15328 GCOM2: Putative GRINL1B complex locus protein 2 Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
1tgz_A226 Structure Of Human Senp2 In Complex With Sumo-1 Len 1e-14
2io0_A232 Crystal Structure Of Human Senp2 In Complex With Pr 1e-13
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 3e-12
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 6e-12
3eay_A323 Crystal Structure Of The Human Senp7 Catalytic Doma 8e-12
2iyc_A226 Senp1 Native Structure Length = 226 1e-11
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 2e-11
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 1e-10
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 3e-10
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 1e-07
2hkp_A221 Sumo Protease Ulp1 With The Catalytic Cysteine Oxid 2e-06
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 319 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 374
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 375 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 434
                GG     +   +RW KGVN+F++  +L+PIH  VHWSLV+I      D     + 
Sbjct: 86  -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------DLRKKCLK 129
Query: 435 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPV 492
           +LDS+  K H    I   +  +L++E     +    SDL + E  W H   +  +    +
Sbjct: 130 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----I 176
Query: 493 PQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 531
           PQQ N  DCG+F   + +    + P    +  + +F K+
Sbjct: 177 PQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKK 215
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232 Back     alignment and structure
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To A Sulfenic Acid Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 1e-35
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 2e-35
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 1e-31
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 1e-29
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 4e-27
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 7e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
 Score =  132 bits (334), Expect = 1e-35
 Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 30/256 (11%)

Query: 276 PVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYL 335
            + D   +SE      T E   E      +         +   + I   DI  L    +L
Sbjct: 2   AMADIGSDSEDEFPEITEEMEKEIKNVFRNGNQDEV-LSEAFRLTITRKDIQTLNHLNWL 60

Query: 336 TSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK 395
              I+NFY+  L  ++          H FNT+F++KLK A           +   +RW K
Sbjct: 61  NDEIINFYMNMLMERSKEKGL--PSVHAFNTFFFTKLKTA----------GYQAVKRWTK 108

Query: 396 GVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFL 455
            V++F    +L+PIH  VHW L ++    K       I + DS+    +      +  +L
Sbjct: 109 KVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDSMGGINN-EACRILLQYL 161

Query: 456 KEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEE 515
           K+E    K++            WQ   ++  +     PQQ N  DCG+F   + +   ++
Sbjct: 162 KQESIDKKRK------EFDTNGWQLFSKKSQEI----PQQMNGSDCGMFACKYADCITKD 211

Query: 516 APERLKKKDLAMFGKR 531
            P    ++ +  F KR
Sbjct: 212 RPINFTQQHMPYFRKR 227
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 100.0
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 91.18
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.2e-49  Score=410.23  Aligned_cols=238  Identities=27%  Similarity=0.544  Sum_probs=194.9

Q ss_pred             cCeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEchhhHHHHHHhhhcC--CCC
Q 008203          305 DAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHK--GGD  382 (574)
Q Consensus       305 ~~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~fnTfFy~kL~~~~~~k--g~d  382 (574)
                      ...|+||+++++++++|+.+||.||.+++||||+|||||++||..+... .....++|+||||||++|.......  +..
T Consensus        19 ~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~   97 (323)
T 3eay_A           19 QKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNP   97 (323)
T ss_dssp             CEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------C
T ss_pred             ceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhcccccccccc
Confidence            3679999999999999999999999999999999999999999755432 1234689999999999998632110  000


Q ss_pred             ----chhhhHHHHhhhccccCCCCcEEEEEeecCCceEEEEEEcCCCCC-------------------------------
Q 008203          383 ----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED-------------------------------  427 (574)
Q Consensus       383 ----~~~~~~~vkrWtk~~nifekd~IfIPIn~~~HWsLlVI~~~~k~~-------------------------------  427 (574)
                          ...+|.+|+|||+++|||++++||||||.+.||+|+|||+|.++.                               
T Consensus        98 ~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  177 (323)
T 3eay_A           98 NLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR  177 (323)
T ss_dssp             CSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------------
T ss_pred             cchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence                124689999999999999999999999999999999999996420                               


Q ss_pred             -------------------------CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCC
Q 008203          428 -------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLP  482 (574)
Q Consensus       428 -------------------------~~~p~I~~lDSL~~~~~k~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p  482 (574)
                                               .+.|+|+|||||++++...++..|+.||..||+.+.+..    ..|+...|.   
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~---  250 (323)
T 3eay_A          178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMV---  250 (323)
T ss_dssp             ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSC---
T ss_pred             cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHce---
Confidence                                     135799999999998778899999999999999875432    223333443   


Q ss_pred             ccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcccchhhhhcccccCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 008203          483 RRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISS  557 (574)
Q Consensus       483 ~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~ftq~dm~~f~~~wf~p~~i~~~R~~I~~lIl~L~~~~~  557 (574)
                          ...+.+|||.|++|||||||+||++|+.+.|.+|++   ++....||++++|..+|..|++||++|...+.
T Consensus       251 ----~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~  318 (323)
T 3eay_A          251 ----DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQ  318 (323)
T ss_dssp             ----EECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             ----eccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence                235679999999999999999999999998888864   45567899999999999999999999987764
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 3e-31
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 9e-31
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 4e-26
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 2e-24
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 3e-31
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 29/218 (13%)

Query: 314 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 373
            +   + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++K  
Sbjct: 27  SEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTK-- 82

Query: 374 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPII 433
                    K + +   +RW K V++F    +L+PIH  VHW L ++            I
Sbjct: 83  --------LKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRK------KNI 128

Query: 434 LHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVP 493
            + DS+    +      +  +LK+E    K++            WQ   ++  +     P
Sbjct: 129 TYYDSMG-GINNEACRILLQYLKQESIDKKRK------EFDTNGWQLFSKKSQEI----P 177

Query: 494 QQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKR 531
           QQ N  D G+F   + +   ++ P    ++ +  F KR
Sbjct: 178 QQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKR 215
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 100.0
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 84.33
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-36  Score=296.49  Aligned_cols=204  Identities=26%  Similarity=0.457  Sum_probs=160.0

Q ss_pred             CccchHhHHHHHHhhcc---CeeecCCCCCCCceEEecchhcccCCCCccCHHHHHHHHHHHHHhcCCCCCCCCceEEEc
Q 008203          289 HIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN  365 (574)
Q Consensus       289 ~~~~~e~~~e~~~~~~~---~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfYl~~L~~~~~~~~~~~~~~~~fn  365 (574)
                      |+.+.+...++.+.+..   ..+.     ..++++||.+|+.+|.+++||||.|||||++||.+..       +++++|+
T Consensus         5 ~~lt~~~~~~~~~~l~~~~~~~~~-----~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~-------~~~~~~~   72 (221)
T d1euva_           5 PELNEKDDDQVQKALASRENTQLM-----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFN   72 (221)
T ss_dssp             CCCCHHHHHHHHHHHTCSSCCEEE-----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECC
T ss_pred             CCCCHHHHHHHHHHHcCCCCceee-----ecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcC-------CCeEEec
Confidence            34566667777766642   1221     2468999999999999999999999999999998764       4689999


Q ss_pred             hhhHHHHHHhhhcCCCCchhhhHHHHhhh--ccccCCCCcEEEEEeec-CCceEEEEEEcCCCCCCCCCeEEEecCCCCC
Q 008203          366 TYFYSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKLH  442 (574)
Q Consensus       366 TfFy~kL~~~~~~kg~d~~~~~~~vkrWt--k~~nifekd~IfIPIn~-~~HWsLlVI~~~~k~~~~~p~I~~lDSL~~~  442 (574)
                      ||||+.|.+.          .|..+++|+  ++.+++.+++||||||. +.||+|+||+++.+      +|+|||||++.
T Consensus        73 s~f~~~l~~~----------~~~~~~~w~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~~  136 (221)
T d1euva_          73 SFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSNG  136 (221)
T ss_dssp             THHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCCS
T ss_pred             cHHHHhHhhh----------chHHHHHHHHhcccchhhcceeEeeEecccceEEEEEeecccc------ceeeeccccCC
Confidence            9999999873          366789998  56799999999999996 58999999999988      99999999886


Q ss_pred             CcH---HHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChhHHHHHHHHHHHhcCCcc
Q 008203          443 CSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPER  519 (574)
Q Consensus       443 ~~k---~i~~~L~~yL~~e~~~~~~~~~~~d~~~~~~~W~~~p~~i~~~~~~vPqQ~Ng~DCGVFVL~f~e~~~~~~p~~  519 (574)
                      ...   .++..|..||..++....           ...|.       ....++|||.||+|||||||+||++++.+.|..
T Consensus       137 ~~~~~~~i~~~l~~~l~~~~~~~~-----------~~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~~~~~~~~~  198 (221)
T d1euva_         137 PNAMSFAILTDLQKYVMEESKHTI-----------GEDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLD  198 (221)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSS-----------CTTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhc-----------CCCCe-------eeeccCCCCCCCCChHHHHHHHHHHHhCCCCCc
Confidence            543   456667777766543211           11232       234579999999999999999999999998776


Q ss_pred             cchhhhhcccccCCCHHHHHHHHHHHHHHHHH
Q 008203          520 LKKKDLAMFGKRWFRPEEASGLRIKIRNLLKK  551 (574)
Q Consensus       520 ftq~dm~~f~~~wf~p~~i~~~R~~I~~lIl~  551 (574)
                      |+++             ++..+|+.|...|+.
T Consensus       199 ~~q~-------------d~~~~R~~i~~~il~  217 (221)
T d1euva_         199 FDYK-------------DAIRMRRFIAHLILT  217 (221)
T ss_dssp             CCHH-------------HHHHHHHHHHHHHHT
T ss_pred             cCHH-------------HHHHHHHHHHHHHHH
Confidence            6654             556788888887764
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure